Query psy2947
Match_columns 441
No_of_seqs 509 out of 4783
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:38:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 6.7E-21 1.5E-25 154.8 16.0 145 257-436 11-157 (160)
2 KOG0027|consensus 99.8 4.6E-20 1E-24 154.1 15.9 142 261-436 3-150 (151)
3 KOG0028|consensus 99.8 3E-19 6.5E-24 141.1 15.2 147 256-436 23-171 (172)
4 KOG0031|consensus 99.8 5.1E-17 1.1E-21 127.5 15.1 148 252-437 18-167 (171)
5 KOG0617|consensus 99.7 4E-20 8.7E-25 149.3 -4.6 157 60-230 32-194 (264)
6 PTZ00183 centrin; Provisional 99.7 2.1E-16 4.5E-21 133.8 17.2 126 309-435 29-154 (158)
7 PLN00113 leucine-rich repeat r 99.7 3.6E-18 7.9E-23 185.5 7.5 196 6-218 27-271 (968)
8 PTZ00184 calmodulin; Provision 99.7 2.6E-16 5.6E-21 131.8 16.8 127 308-435 22-148 (149)
9 KOG0617|consensus 99.7 5.1E-18 1.1E-22 137.2 1.2 159 76-246 28-187 (264)
10 KOG0030|consensus 99.6 7.1E-15 1.5E-19 113.5 13.4 139 260-435 5-151 (152)
11 KOG0044|consensus 99.6 6.4E-15 1.4E-19 124.5 14.4 124 310-434 40-174 (193)
12 KOG0444|consensus 99.6 1E-16 2.2E-21 153.4 2.2 161 59-221 76-259 (1255)
13 KOG0037|consensus 99.6 1.2E-14 2.6E-19 121.9 14.0 154 264-432 55-217 (221)
14 PTZ00183 centrin; Provisional 99.6 2.2E-14 4.7E-19 121.3 15.9 140 258-399 9-154 (158)
15 KOG4194|consensus 99.6 1.2E-15 2.5E-20 145.2 7.1 177 35-221 42-235 (873)
16 KOG0037|consensus 99.6 1.4E-13 3E-18 115.6 16.9 120 308-434 68-187 (221)
17 PTZ00184 calmodulin; Provision 99.6 1.1E-13 2.4E-18 115.7 15.5 138 259-398 4-147 (149)
18 KOG0444|consensus 99.6 3.8E-16 8.3E-21 149.6 0.4 136 74-219 215-351 (1255)
19 PLN00113 leucine-rich repeat r 99.6 4.5E-15 9.7E-20 161.4 8.7 160 59-219 138-320 (968)
20 KOG0034|consensus 99.6 1.6E-13 3.4E-18 116.2 16.1 101 336-436 68-176 (187)
21 KOG0034|consensus 99.5 2.4E-13 5.2E-18 115.1 13.8 140 258-399 25-175 (187)
22 PLN03150 hypothetical protein; 99.5 3.8E-14 8.3E-19 144.9 9.2 154 4-166 368-529 (623)
23 COG5126 FRQ1 Ca2+-binding prot 99.5 5.8E-13 1.3E-17 108.6 12.3 117 266-399 40-156 (160)
24 KOG4237|consensus 99.5 9.3E-15 2E-19 133.1 1.0 171 36-232 34-213 (498)
25 KOG0472|consensus 99.5 2.5E-14 5.3E-19 130.6 3.3 160 58-230 249-526 (565)
26 KOG0044|consensus 99.5 8.8E-13 1.9E-17 111.6 12.5 139 259-399 22-175 (193)
27 KOG0036|consensus 99.4 1.9E-12 4.1E-17 118.2 14.4 118 311-434 28-145 (463)
28 KOG0027|consensus 99.4 1.8E-12 4E-17 108.2 11.7 103 333-436 7-114 (151)
29 KOG4194|consensus 99.4 7E-14 1.5E-18 133.3 0.4 154 59-220 267-429 (873)
30 KOG0472|consensus 99.4 2E-14 4.4E-19 131.1 -3.5 167 60-230 113-296 (565)
31 KOG0028|consensus 99.3 1.4E-11 3.1E-16 97.9 11.4 119 268-399 52-170 (172)
32 KOG4223|consensus 99.3 2.2E-11 4.8E-16 108.4 11.8 164 267-431 114-301 (325)
33 PF14580 LRR_9: Leucine-rich r 99.3 4E-12 8.6E-17 107.3 5.4 102 60-164 18-125 (175)
34 cd05022 S-100A13 S-100A13: S-1 99.3 1.2E-11 2.6E-16 91.8 7.1 65 371-435 8-75 (89)
35 PF13499 EF-hand_7: EF-hand do 99.3 2.7E-11 5.8E-16 85.8 7.8 61 373-433 2-66 (66)
36 KOG0532|consensus 99.2 6.2E-13 1.3E-17 126.6 -3.0 158 60-220 74-247 (722)
37 KOG0532|consensus 99.2 3E-13 6.6E-18 128.7 -5.1 133 59-205 119-255 (722)
38 PRK15387 E3 ubiquitin-protein 99.2 5.7E-11 1.2E-15 122.0 10.2 41 187-228 424-465 (788)
39 KOG0618|consensus 99.2 3.1E-12 6.7E-17 128.3 -0.3 93 125-228 379-473 (1081)
40 KOG4223|consensus 99.1 3.6E-10 7.8E-15 100.8 10.8 129 308-437 88-230 (325)
41 PLN02964 phosphatidylserine de 99.1 4E-10 8.6E-15 112.6 12.4 100 333-436 142-244 (644)
42 PRK15370 E3 ubiquitin-protein 99.1 2.1E-10 4.5E-15 118.5 10.7 147 61-227 199-364 (754)
43 cd05027 S-100B S-100B: S-100B 99.1 2.6E-10 5.6E-15 84.9 8.2 65 371-435 8-79 (88)
44 KOG0036|consensus 99.1 1.7E-09 3.6E-14 99.3 14.5 159 260-431 8-179 (463)
45 PRK15370 E3 ubiquitin-protein 99.1 3.3E-10 7.1E-15 117.0 10.4 35 187-221 390-429 (754)
46 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 99.5 4.6 111 77-221 15-127 (175)
47 KOG0618|consensus 99.1 1.2E-11 2.7E-16 124.1 -0.8 152 60-225 240-446 (1081)
48 PRK15387 E3 ubiquitin-protein 99.1 1.8E-10 3.8E-15 118.4 7.3 15 57-71 238-252 (788)
49 KOG0038|consensus 99.1 8.7E-10 1.9E-14 86.0 8.8 108 291-398 64-176 (189)
50 KOG1259|consensus 99.1 3.6E-11 7.9E-16 106.2 1.3 143 77-235 280-425 (490)
51 KOG4237|consensus 99.1 1E-11 2.2E-16 113.5 -2.4 111 125-246 270-383 (498)
52 PF13499 EF-hand_7: EF-hand do 99.1 3.2E-10 6.9E-15 80.3 5.6 63 335-397 1-66 (66)
53 cd05029 S-100A6 S-100A6: S-100 99.1 7.3E-10 1.6E-14 82.5 7.7 64 372-435 11-79 (88)
54 KOG1259|consensus 99.0 5.2E-11 1.1E-15 105.3 0.4 106 101-220 281-387 (490)
55 cd05026 S-100Z S-100Z: S-100Z 99.0 1.9E-09 4E-14 81.6 8.0 63 372-434 11-80 (93)
56 KOG0038|consensus 99.0 2.2E-09 4.7E-14 83.8 8.4 100 337-436 74-178 (189)
57 PLN02964 phosphatidylserine de 99.0 5.8E-09 1.3E-13 104.4 13.4 121 259-413 136-271 (644)
58 cd05031 S-100A10_like S-100A10 99.0 2.6E-09 5.7E-14 81.2 7.7 64 371-434 8-78 (94)
59 cd05025 S-100A1 S-100A1: S-100 98.9 3.4E-09 7.5E-14 80.2 8.0 65 371-435 9-80 (92)
60 PF13833 EF-hand_8: EF-hand do 98.9 2.5E-09 5.4E-14 72.2 6.5 52 384-435 1-53 (54)
61 PLN03150 hypothetical protein; 98.9 1.9E-09 4.1E-14 110.6 8.6 82 82-164 419-502 (623)
62 cd05022 S-100A13 S-100A13: S-1 98.9 4.2E-09 9.2E-14 78.2 7.9 67 334-400 8-76 (89)
63 cd05023 S-100A11 S-100A11: S-1 98.9 6.6E-09 1.4E-13 77.5 7.9 65 371-435 9-80 (89)
64 PLN03210 Resistant to P. syrin 98.9 7.6E-09 1.7E-13 113.8 12.0 101 60-163 610-715 (1153)
65 COG4886 Leucine-rich repeat (L 98.9 5.6E-10 1.2E-14 109.1 2.9 147 61-219 116-267 (394)
66 cd00052 EH Eps15 homology doma 98.9 7E-09 1.5E-13 73.6 7.4 59 374-434 2-60 (67)
67 PLN03210 Resistant to P. syrin 98.9 6.2E-09 1.3E-13 114.5 10.4 110 105-229 779-890 (1153)
68 smart00027 EH Eps15 homology d 98.9 1.1E-08 2.4E-13 78.1 8.1 61 371-433 10-70 (96)
69 COG4886 Leucine-rich repeat (L 98.9 7.1E-10 1.5E-14 108.4 1.7 146 62-220 141-290 (394)
70 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 75.2 2.9 57 82-140 2-60 (61)
71 cd00051 EFh EF-hand, calcium b 98.8 2.5E-08 5.4E-13 69.3 8.2 61 373-433 2-62 (63)
72 cd00213 S-100 S-100: S-100 dom 98.8 1.5E-08 3.2E-13 76.1 7.3 65 371-435 8-79 (88)
73 KOG2643|consensus 98.8 1.6E-08 3.6E-13 93.4 8.5 165 266-437 288-455 (489)
74 cd05026 S-100Z S-100Z: S-100Z 98.8 2.9E-08 6.3E-13 75.0 8.4 68 334-401 10-83 (93)
75 cd05027 S-100B S-100B: S-100B 98.8 3.5E-08 7.6E-13 73.5 8.5 67 334-400 8-80 (88)
76 PF13855 LRR_8: Leucine rich r 98.8 5.3E-09 1.1E-13 72.6 3.1 59 104-164 1-61 (61)
77 KOG4251|consensus 98.7 6.1E-08 1.3E-12 82.7 9.4 167 264-431 99-341 (362)
78 cd05029 S-100A6 S-100A6: S-100 98.7 9E-08 2E-12 71.3 8.5 67 334-400 10-80 (88)
79 PF14658 EF-hand_9: EF-hand do 98.7 8.1E-08 1.8E-12 65.6 6.8 63 375-437 2-66 (66)
80 KOG0377|consensus 98.7 3.8E-07 8.2E-12 84.4 12.8 129 302-433 469-613 (631)
81 cd00116 LRR_RI Leucine-rich re 98.7 8.1E-09 1.8E-13 97.8 2.1 104 60-164 80-205 (319)
82 cd00252 SPARC_EC SPARC_EC; ext 98.7 1.1E-07 2.5E-12 74.3 7.8 60 371-434 48-107 (116)
83 cd05031 S-100A10_like S-100A10 98.6 7.7E-08 1.7E-12 73.1 6.5 69 333-401 7-81 (94)
84 KOG4579|consensus 98.6 4.2E-09 9.1E-14 82.7 -0.5 101 62-164 28-135 (177)
85 cd05030 calgranulins Calgranul 98.6 1.1E-07 2.4E-12 71.1 6.8 65 372-436 9-80 (88)
86 cd05025 S-100A1 S-100A1: S-100 98.6 2.3E-07 4.9E-12 70.2 8.6 68 333-400 8-81 (92)
87 cd00052 EH Eps15 homology doma 98.6 2E-07 4.4E-12 66.0 7.2 61 337-400 2-62 (67)
88 cd05023 S-100A11 S-100A11: S-1 98.6 3.1E-07 6.7E-12 68.5 8.4 67 334-400 9-81 (89)
89 cd00252 SPARC_EC SPARC_EC; ext 98.6 2.6E-07 5.6E-12 72.3 7.8 61 333-398 47-107 (116)
90 cd00116 LRR_RI Leucine-rich re 98.6 1.2E-08 2.7E-13 96.6 0.4 105 60-164 50-177 (319)
91 KOG0031|consensus 98.6 1.4E-06 3E-11 69.3 11.7 99 333-436 31-130 (171)
92 cd00213 S-100 S-100: S-100 dom 98.6 2.9E-07 6.4E-12 69.1 7.7 67 334-400 8-80 (88)
93 KOG3207|consensus 98.6 1.1E-08 2.4E-13 95.1 -0.3 155 58-220 143-314 (505)
94 smart00027 EH Eps15 homology d 98.6 4.5E-07 9.7E-12 69.2 8.6 63 334-399 10-72 (96)
95 KOG0030|consensus 98.5 1.1E-06 2.3E-11 68.7 10.3 104 331-435 8-116 (152)
96 PF13833 EF-hand_8: EF-hand do 98.5 4.2E-07 9.1E-12 61.2 6.4 51 348-399 2-53 (54)
97 cd00051 EFh EF-hand, calcium b 98.5 1E-06 2.2E-11 61.0 7.7 61 336-397 2-62 (63)
98 PF00036 EF-hand_1: EF hand; 98.4 3E-07 6.5E-12 52.5 3.7 27 373-399 2-28 (29)
99 KOG2643|consensus 98.4 9.6E-07 2.1E-11 82.0 7.9 117 310-433 212-344 (489)
100 KOG0041|consensus 98.4 1.3E-06 2.8E-11 72.5 7.6 99 333-432 98-200 (244)
101 KOG4666|consensus 98.4 3.6E-07 7.7E-12 81.4 4.2 120 309-435 239-359 (412)
102 PF12799 LRR_4: Leucine Rich r 98.3 4E-07 8.6E-12 58.0 3.1 39 105-145 2-40 (44)
103 PF12799 LRR_4: Leucine Rich r 98.3 6.2E-07 1.3E-11 57.1 3.8 36 82-117 2-37 (44)
104 KOG4579|consensus 98.3 3.4E-08 7.4E-13 77.6 -2.4 127 82-220 28-159 (177)
105 cd05030 calgranulins Calgranul 98.3 2.5E-06 5.5E-11 63.7 7.3 67 334-400 8-80 (88)
106 PF00036 EF-hand_1: EF hand; 98.3 8.7E-07 1.9E-11 50.6 3.6 28 335-362 1-28 (29)
107 KOG3207|consensus 98.3 1E-07 2.2E-12 88.9 -0.5 159 59-227 119-291 (505)
108 cd05024 S-100A10 S-100A10: A s 98.3 4.7E-06 1E-10 61.4 8.2 60 373-433 10-74 (91)
109 KOG1859|consensus 98.3 2.3E-08 5.1E-13 98.5 -5.1 83 76-163 182-265 (1096)
110 KOG0531|consensus 98.3 3.3E-07 7.1E-12 90.0 2.7 104 60-167 94-201 (414)
111 KOG1859|consensus 98.3 5E-08 1.1E-12 96.3 -3.5 125 82-221 165-293 (1096)
112 KOG4251|consensus 98.3 1.2E-06 2.6E-11 75.0 4.7 131 308-438 112-267 (362)
113 PF14658 EF-hand_9: EF-hand do 98.2 7.1E-06 1.5E-10 56.1 6.8 61 339-399 3-64 (66)
114 KOG0531|consensus 98.2 7.5E-07 1.6E-11 87.4 2.3 105 60-168 71-178 (414)
115 KOG0751|consensus 98.2 1.5E-05 3.2E-10 75.2 10.4 98 262-363 29-137 (694)
116 KOG0377|consensus 98.1 2.6E-05 5.6E-10 72.6 11.2 135 265-400 463-616 (631)
117 PRK12309 transaldolase/EF-hand 98.1 1.2E-05 2.6E-10 76.7 9.0 90 332-437 297-387 (391)
118 PF13405 EF-hand_6: EF-hand do 98.1 5.7E-06 1.2E-10 48.3 3.7 29 373-401 2-31 (31)
119 KOG0041|consensus 98.0 6.7E-05 1.5E-09 62.5 10.7 63 371-433 99-161 (244)
120 KOG4658|consensus 98.0 4.6E-06 1E-10 88.1 3.7 100 62-163 546-653 (889)
121 KOG4658|consensus 98.0 3E-06 6.6E-11 89.5 1.9 102 57-159 567-675 (889)
122 PRK15386 type III secretion pr 97.9 1.9E-05 4.1E-10 75.3 6.7 71 60-140 51-123 (426)
123 PRK12309 transaldolase/EF-hand 97.9 3.6E-05 7.9E-10 73.5 8.3 57 329-399 329-385 (391)
124 cd05024 S-100A10 S-100A10: A s 97.9 0.00011 2.3E-09 54.3 8.4 66 334-400 8-77 (91)
125 PF13202 EF-hand_5: EF hand; P 97.9 1.9E-05 4E-10 43.4 3.1 21 375-395 3-23 (25)
126 KOG1644|consensus 97.8 3.1E-05 6.7E-10 65.4 5.2 81 81-164 42-125 (233)
127 PF12763 EF-hand_4: Cytoskelet 97.8 0.00013 2.8E-09 55.9 7.5 60 371-433 10-69 (104)
128 PF14788 EF-hand_10: EF hand; 97.8 9.2E-05 2E-09 47.6 5.4 47 388-434 2-48 (51)
129 KOG1644|consensus 97.7 5.4E-05 1.2E-09 64.0 5.5 100 61-162 42-150 (233)
130 PF13202 EF-hand_5: EF hand; P 97.7 5.2E-05 1.1E-09 41.6 3.1 25 336-360 1-25 (25)
131 KOG0040|consensus 97.6 0.0011 2.3E-08 70.8 12.8 119 308-434 2264-2397(2399)
132 PF13405 EF-hand_6: EF-hand do 97.5 0.00011 2.4E-09 42.8 3.4 27 335-361 1-27 (31)
133 KOG0040|consensus 97.5 0.00025 5.5E-09 75.2 7.8 101 334-435 2253-2361(2399)
134 PRK15386 type III secretion pr 97.5 0.0004 8.6E-09 66.4 8.0 109 55-186 66-184 (426)
135 KOG2562|consensus 97.5 0.001 2.2E-08 63.0 10.1 126 265-395 277-420 (493)
136 KOG1909|consensus 97.4 4.2E-05 9.1E-10 69.9 0.8 156 60-221 29-227 (382)
137 KOG2982|consensus 97.4 6.3E-05 1.4E-09 67.3 1.5 81 80-162 70-156 (418)
138 PF14788 EF-hand_10: EF hand; 97.3 0.00082 1.8E-08 43.3 5.7 49 351-400 2-50 (51)
139 PF12763 EF-hand_4: Cytoskelet 97.3 0.0011 2.4E-08 50.8 7.4 62 333-398 9-70 (104)
140 KOG1909|consensus 97.3 6.4E-05 1.4E-09 68.7 0.3 134 79-219 90-253 (382)
141 KOG2562|consensus 97.3 0.00093 2E-08 63.2 7.9 121 306-431 287-420 (493)
142 KOG2982|consensus 97.3 4.9E-05 1.1E-09 68.0 -0.7 105 59-163 69-184 (418)
143 KOG2739|consensus 97.2 0.00024 5.1E-09 62.7 2.5 79 77-158 61-149 (260)
144 PF08263 LRRNT_2: Leucine rich 97.1 3.6E-05 7.7E-10 48.8 -2.1 42 7-52 2-43 (43)
145 KOG2739|consensus 97.1 0.00035 7.7E-09 61.6 3.3 84 78-163 40-127 (260)
146 PF09279 EF-hand_like: Phospho 97.0 0.002 4.4E-08 47.5 6.1 66 372-438 1-72 (83)
147 KOG0751|consensus 97.0 0.01 2.3E-07 56.6 11.8 136 297-435 29-175 (694)
148 COG5238 RNA1 Ran GTPase-activa 97.0 0.00019 4.2E-09 63.5 0.4 154 60-221 29-228 (388)
149 KOG3665|consensus 97.0 0.00027 5.9E-09 73.0 1.5 61 79-140 171-231 (699)
150 PF10591 SPARC_Ca_bdg: Secrete 97.0 0.00034 7.4E-09 54.7 1.6 59 371-431 54-112 (113)
151 KOG3665|consensus 96.9 0.00073 1.6E-08 69.9 4.0 100 61-163 122-231 (699)
152 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.00053 1.1E-08 53.6 2.2 60 333-395 53-112 (113)
153 KOG4666|consensus 96.8 0.0009 2E-08 60.2 2.8 92 308-401 270-361 (412)
154 KOG0473|consensus 96.8 3.7E-05 8E-10 66.3 -5.8 87 76-164 37-123 (326)
155 KOG2123|consensus 96.6 0.00012 2.7E-09 64.9 -3.6 77 61-140 19-99 (388)
156 KOG0046|consensus 96.6 0.0064 1.4E-07 58.5 7.0 59 373-432 21-82 (627)
157 smart00054 EFh EF-hand, calciu 96.5 0.0032 6.8E-08 35.1 3.1 25 374-398 3-27 (29)
158 PF00560 LRR_1: Leucine Rich R 96.5 0.00095 2.1E-08 35.3 0.5 18 83-100 2-19 (22)
159 PF00560 LRR_1: Leucine Rich R 96.3 0.0015 3.2E-08 34.5 0.5 16 131-146 2-17 (22)
160 KOG4065|consensus 96.2 0.011 2.5E-07 44.7 5.0 56 377-432 73-142 (144)
161 smart00054 EFh EF-hand, calciu 96.0 0.0087 1.9E-07 33.2 3.0 27 336-362 2-28 (29)
162 PF09279 EF-hand_like: Phospho 96.0 0.016 3.5E-07 42.6 5.1 64 335-399 1-69 (83)
163 KOG2123|consensus 95.9 0.00046 1E-08 61.3 -4.0 80 80-163 18-99 (388)
164 KOG0169|consensus 95.9 0.14 2.9E-06 52.2 12.4 123 308-436 147-275 (746)
165 KOG1029|consensus 95.8 0.1 2.2E-06 52.8 10.9 60 372-433 196-255 (1118)
166 KOG2120|consensus 95.7 0.00072 1.6E-08 60.7 -3.8 134 82-218 186-324 (419)
167 PF13504 LRR_7: Leucine rich r 95.5 0.0087 1.9E-07 29.3 1.4 15 82-96 2-16 (17)
168 COG5238 RNA1 Ran GTPase-activa 95.4 0.0065 1.4E-07 54.1 1.2 103 60-164 57-197 (388)
169 KOG0473|consensus 95.4 0.00036 7.9E-09 60.4 -6.4 82 59-142 40-124 (326)
170 KOG2120|consensus 95.2 0.0013 2.8E-08 59.1 -3.6 79 61-141 185-272 (419)
171 PF13504 LRR_7: Leucine rich r 95.2 0.012 2.6E-07 28.8 1.4 12 106-117 3-14 (17)
172 PF13306 LRR_5: Leucine rich r 95.1 0.066 1.4E-06 42.8 6.4 95 61-161 12-112 (129)
173 PF05042 Caleosin: Caleosin re 94.9 0.41 9E-06 39.8 10.2 62 370-432 95-163 (174)
174 KOG0046|consensus 94.9 0.097 2.1E-06 50.7 7.4 65 335-400 20-86 (627)
175 KOG0169|consensus 94.7 0.22 4.7E-06 50.8 9.7 97 333-434 135-231 (746)
176 KOG3555|consensus 94.7 0.071 1.5E-06 48.8 5.7 63 334-401 250-312 (434)
177 PLN02952 phosphoinositide phos 94.5 0.34 7.4E-06 49.1 10.7 57 309-366 12-69 (599)
178 KOG4065|consensus 94.2 0.052 1.1E-06 41.3 3.1 59 338-396 71-142 (144)
179 KOG3555|consensus 93.8 0.27 5.9E-06 45.1 7.5 64 370-437 249-312 (434)
180 PF13306 LRR_5: Leucine rich r 93.8 0.18 3.9E-06 40.2 5.9 82 76-162 7-91 (129)
181 PLN02952 phosphoinositide phos 93.7 0.62 1.3E-05 47.3 10.6 88 347-435 13-110 (599)
182 smart00370 LRR Leucine-rich re 93.3 0.085 1.8E-06 28.9 2.2 17 129-145 2-18 (26)
183 smart00369 LRR_TYP Leucine-ric 93.3 0.085 1.8E-06 28.9 2.2 17 129-145 2-18 (26)
184 KOG4578|consensus 93.0 0.068 1.5E-06 48.5 2.4 65 335-399 334-398 (421)
185 KOG2243|consensus 92.7 0.17 3.8E-06 54.1 5.2 60 376-436 4062-4121(5019)
186 smart00369 LRR_TYP Leucine-ric 92.5 0.13 2.7E-06 28.2 2.3 20 103-124 1-20 (26)
187 smart00370 LRR Leucine-rich re 92.5 0.13 2.7E-06 28.2 2.3 20 103-124 1-20 (26)
188 KOG4347|consensus 91.7 0.69 1.5E-05 46.4 7.7 78 314-393 535-612 (671)
189 TIGR00864 PCC polycystin catio 90.8 0.13 2.7E-06 60.1 1.9 43 135-177 1-44 (2740)
190 PF05517 p25-alpha: p25-alpha 90.6 1.4 3E-05 36.6 7.5 56 344-399 12-69 (154)
191 KOG3866|consensus 90.5 0.6 1.3E-05 42.2 5.5 84 352-435 225-324 (442)
192 KOG0035|consensus 90.0 0.67 1.4E-05 48.6 6.1 68 371-438 747-819 (890)
193 PF08726 EFhand_Ca_insen: Ca2+ 89.3 0.17 3.8E-06 35.3 1.0 57 369-433 4-67 (69)
194 smart00364 LRR_BAC Leucine-ric 89.1 0.27 5.8E-06 26.9 1.4 17 82-98 3-19 (26)
195 PF05042 Caleosin: Caleosin re 88.9 2.2 4.8E-05 35.6 7.2 132 265-398 6-165 (174)
196 KOG0042|consensus 88.5 0.9 2E-05 44.9 5.5 63 373-435 595-657 (680)
197 KOG1707|consensus 87.2 3.2 7E-05 41.5 8.4 166 258-431 187-373 (625)
198 KOG3866|consensus 87.2 1.8 4E-05 39.2 6.2 84 315-398 225-323 (442)
199 KOG1265|consensus 86.2 7.6 0.00016 40.8 10.6 66 370-435 220-299 (1189)
200 KOG4578|consensus 85.8 0.94 2E-05 41.4 3.7 62 373-436 335-399 (421)
201 KOG4347|consensus 84.3 1.6 3.4E-05 44.0 4.8 78 351-429 535-612 (671)
202 KOG1955|consensus 84.0 2.6 5.6E-05 40.9 5.9 60 336-398 233-292 (737)
203 smart00365 LRR_SD22 Leucine-ri 83.5 0.98 2.1E-05 24.8 1.8 16 129-144 2-17 (26)
204 KOG1955|consensus 82.9 2.9 6.4E-05 40.5 5.8 61 371-433 231-291 (737)
205 PF09069 EF-hand_3: EF-hand; 82.9 9.7 0.00021 28.2 7.3 28 334-362 3-30 (90)
206 PF09069 EF-hand_3: EF-hand; 79.5 18 0.0004 26.8 7.8 64 370-436 2-76 (90)
207 KOG1029|consensus 79.4 3 6.4E-05 42.8 4.7 63 333-398 194-256 (1118)
208 PF14513 DAG_kinase_N: Diacylg 79.4 6 0.00013 32.0 5.7 35 348-382 46-80 (138)
209 KOG4403|consensus 79.3 7.1 0.00015 37.3 6.9 86 310-399 41-129 (575)
210 KOG2243|consensus 78.7 3.1 6.8E-05 45.3 4.8 60 338-399 4061-4120(5019)
211 KOG0035|consensus 77.6 9.1 0.0002 40.6 7.8 98 333-431 746-848 (890)
212 PLN02222 phosphoinositide phos 77.1 11 0.00024 38.4 8.1 64 333-398 24-89 (581)
213 PLN02228 Phosphoinositide phos 75.1 16 0.00035 37.1 8.6 66 331-398 21-91 (567)
214 PF13516 LRR_6: Leucine Rich r 75.0 1.5 3.2E-05 23.3 0.8 14 104-117 2-15 (24)
215 PF14513 DAG_kinase_N: Diacylg 74.8 9.3 0.0002 30.9 5.6 35 385-419 46-81 (138)
216 PLN02230 phosphoinositide phos 72.6 19 0.0004 37.0 8.4 30 334-364 29-58 (598)
217 KOG4308|consensus 70.2 0.097 2.1E-06 52.1 -8.2 156 60-220 114-303 (478)
218 KOG1265|consensus 69.7 38 0.00082 36.0 9.7 82 314-399 205-299 (1189)
219 smart00368 LRR_RI Leucine rich 69.5 4.1 8.8E-05 22.7 1.8 13 130-142 3-15 (28)
220 PF05517 p25-alpha: p25-alpha 69.4 28 0.0006 28.9 7.5 52 311-362 16-69 (154)
221 KOG3763|consensus 69.3 2 4.4E-05 42.6 0.8 59 103-164 217-282 (585)
222 smart00013 LRRNT Leucine rich 68.9 4.4 9.6E-05 23.6 1.9 18 38-55 1-19 (33)
223 PF01462 LRRNT: Leucine rich r 66.1 3.1 6.7E-05 23.3 0.8 19 38-56 1-20 (28)
224 PLN02223 phosphoinositide phos 65.6 27 0.00058 35.2 7.7 65 370-435 15-92 (537)
225 PF12174 RST: RCD1-SRO-TAF4 (R 65.1 19 0.00042 25.3 4.8 59 351-416 9-67 (70)
226 KOG0042|consensus 62.5 15 0.00033 36.7 5.3 64 336-400 595-658 (680)
227 cd07313 terB_like_2 tellurium 62.4 25 0.00055 26.6 5.7 11 351-361 54-64 (104)
228 PLN02228 Phosphoinositide phos 61.1 41 0.00088 34.4 8.1 64 297-360 20-90 (567)
229 KOG0039|consensus 61.1 18 0.00039 37.9 5.9 30 330-360 14-43 (646)
230 KOG3449|consensus 61.1 45 0.00098 25.5 6.4 55 375-434 5-59 (112)
231 KOG4308|consensus 60.4 0.24 5.1E-06 49.4 -7.6 131 61-196 144-302 (478)
232 KOG1947|consensus 59.9 4 8.6E-05 40.7 0.9 104 60-164 187-307 (482)
233 TIGR01848 PHA_reg_PhaR polyhyd 59.2 59 0.0013 24.8 6.7 23 341-363 10-32 (107)
234 PF12174 RST: RCD1-SRO-TAF4 (R 57.5 15 0.00032 25.8 3.2 49 313-365 8-56 (70)
235 KOG0998|consensus 55.6 5 0.00011 43.1 0.8 60 372-433 284-343 (847)
236 PF09068 EF-hand_2: EF hand; 55.4 57 0.0012 26.0 6.6 68 332-399 39-125 (127)
237 KOG3763|consensus 55.0 6.9 0.00015 39.0 1.6 61 79-142 216-283 (585)
238 PF07308 DUF1456: Protein of u 54.4 40 0.00086 23.5 4.9 26 391-416 17-42 (68)
239 PF02761 Cbl_N2: CBL proto-onc 52.9 68 0.0015 23.4 6.0 46 386-431 21-66 (85)
240 PLN02222 phosphoinositide phos 52.6 54 0.0012 33.6 7.4 64 299-362 23-90 (581)
241 KOG0039|consensus 52.0 29 0.00062 36.3 5.6 78 348-433 2-87 (646)
242 PF08976 DUF1880: Domain of un 51.8 14 0.0003 28.6 2.5 31 404-434 4-34 (118)
243 cd07313 terB_like_2 tellurium 51.5 43 0.00094 25.3 5.3 79 348-428 13-93 (104)
244 KOG3864|consensus 49.7 3.8 8.2E-05 35.4 -1.0 16 151-166 150-165 (221)
245 PF00404 Dockerin_1: Dockerin 49.4 28 0.00061 18.0 2.6 12 382-393 2-13 (21)
246 PF11116 DUF2624: Protein of u 47.6 40 0.00087 24.6 4.1 32 386-417 13-44 (85)
247 KOG2871|consensus 46.8 19 0.00041 34.0 2.9 67 331-397 306-372 (449)
248 PLN02230 phosphoinositide phos 46.2 88 0.0019 32.3 7.8 29 299-327 27-58 (598)
249 PF07879 PHB_acc_N: PHB/PHA ac 45.3 13 0.00029 25.3 1.3 46 341-397 10-55 (64)
250 KOG1947|consensus 45.3 6.3 0.00014 39.3 -0.4 103 59-161 212-330 (482)
251 cd07316 terB_like_DjlA N-termi 44.0 94 0.002 23.4 6.2 19 373-393 77-95 (106)
252 PF07499 RuvA_C: RuvA, C-termi 43.9 75 0.0016 20.1 4.6 43 390-436 3-45 (47)
253 TIGR00864 PCC polycystin catio 43.8 15 0.00032 44.1 2.2 31 87-117 1-32 (2740)
254 KOG4403|consensus 43.0 36 0.00078 32.8 4.2 54 346-399 40-96 (575)
255 PF08726 EFhand_Ca_insen: Ca2+ 42.1 34 0.00073 24.0 3.0 30 331-361 3-32 (69)
256 KOG2871|consensus 41.5 30 0.00066 32.6 3.4 62 370-431 308-370 (449)
257 PF08414 NADPH_Ox: Respiratory 39.9 1E+02 0.0022 23.2 5.4 55 340-400 36-93 (100)
258 KOG1954|consensus 39.6 39 0.00084 32.2 3.8 56 373-431 446-501 (532)
259 PF13623 SurA_N_2: SurA N-term 38.6 2.2E+02 0.0048 23.3 8.0 38 396-433 98-145 (145)
260 KOG3864|consensus 38.1 16 0.00035 31.6 1.1 91 72-163 92-187 (221)
261 PF05099 TerB: Tellurite resis 37.6 26 0.00055 28.3 2.2 82 309-392 35-117 (140)
262 PRK09430 djlA Dna-J like membr 36.8 3.3E+02 0.0072 24.9 10.8 17 374-392 134-150 (267)
263 COG4103 Uncharacterized protei 36.7 1.2E+02 0.0027 24.5 5.6 51 347-399 79-129 (148)
264 KOG1264|consensus 36.4 99 0.0021 32.7 6.3 17 422-438 280-296 (1267)
265 PF08414 NADPH_Ox: Respiratory 35.2 1.2E+02 0.0025 23.0 5.0 57 371-432 30-89 (100)
266 PF01023 S_100: S-100/ICaBP ty 35.1 70 0.0015 20.0 3.4 27 373-399 8-36 (44)
267 cd07316 terB_like_DjlA N-termi 34.3 1.7E+02 0.0036 22.0 6.3 38 388-428 53-94 (106)
268 TIGR03573 WbuX N-acetyl sugar 32.7 83 0.0018 30.0 5.1 44 384-433 299-342 (343)
269 PF11116 DUF2624: Protein of u 32.4 2E+02 0.0044 21.1 7.7 53 310-363 11-63 (85)
270 PF03979 Sigma70_r1_1: Sigma-7 31.7 46 0.001 24.1 2.5 31 385-417 19-49 (82)
271 KOG4341|consensus 31.6 24 0.00052 34.2 1.2 107 60-166 293-415 (483)
272 PF04282 DUF438: Family of unk 31.2 1.9E+02 0.0041 20.4 5.7 6 314-319 29-34 (71)
273 TIGR01848 PHA_reg_PhaR polyhyd 30.3 1.2E+02 0.0026 23.2 4.5 48 379-426 11-68 (107)
274 COG5502 Uncharacterized conser 30.0 2.6E+02 0.0056 22.5 6.4 59 310-378 72-133 (135)
275 PF05819 NolX: NolX protein; 29.5 4.3E+02 0.0093 26.4 9.0 98 264-362 366-482 (624)
276 COG4103 Uncharacterized protei 29.0 2.7E+02 0.0058 22.7 6.4 58 338-399 34-94 (148)
277 COG4359 Uncharacterized conser 28.9 1.7E+02 0.0037 25.1 5.5 14 311-324 11-24 (220)
278 PF07492 Trehalase_Ca-bi: Neut 28.6 17 0.00037 20.6 -0.2 18 410-427 2-19 (30)
279 PLN02508 magnesium-protoporphy 27.7 92 0.002 29.1 4.1 95 315-420 22-123 (357)
280 cd08315 Death_TRAILR_DR4_DR5 D 26.9 2.8E+02 0.006 20.8 7.6 44 370-413 47-90 (96)
281 PF03672 UPF0154: Uncharacteri 26.5 1.5E+02 0.0033 20.4 4.0 32 385-416 29-60 (64)
282 PTZ00373 60S Acidic ribosomal 26.0 3.2E+02 0.0068 21.3 6.2 52 376-432 8-59 (112)
283 PHA02105 hypothetical protein 25.7 1.4E+02 0.003 19.9 3.5 47 387-433 4-55 (68)
284 TIGR02675 tape_meas_nterm tape 25.6 81 0.0018 22.4 2.8 13 348-360 28-40 (75)
285 PF08044 DUF1707: Domain of un 25.5 86 0.0019 20.6 2.7 31 384-414 20-50 (53)
286 PF12419 DUF3670: SNF2 Helicas 24.9 1.3E+02 0.0028 24.5 4.3 49 384-432 80-138 (141)
287 PF05099 TerB: Tellurite resis 23.8 47 0.001 26.7 1.5 85 347-434 36-125 (140)
288 PF09336 Vps4_C: Vps4 C termin 23.8 92 0.002 21.2 2.7 25 387-411 29-53 (62)
289 cd08324 CARD_NOD1_CARD4 Caspas 23.5 1.4E+02 0.0031 21.7 3.6 48 385-437 27-74 (85)
290 KOG4004|consensus 23.4 35 0.00076 29.2 0.7 58 337-397 190-248 (259)
291 KOG0998|consensus 23.4 45 0.00097 36.1 1.6 62 335-399 12-73 (847)
292 KOG3077|consensus 23.4 5.7E+02 0.012 23.3 8.7 78 335-414 65-143 (260)
293 KOG4004|consensus 23.3 31 0.00066 29.5 0.3 55 377-434 193-249 (259)
294 PF02671 PAH: Paired amphipath 22.9 2E+02 0.0044 17.9 5.1 16 349-364 17-32 (47)
295 PF08461 HTH_12: Ribonuclease 22.9 1.2E+02 0.0025 21.0 3.1 37 384-420 10-46 (66)
296 PF09373 PMBR: Pseudomurein-bi 22.4 73 0.0016 18.5 1.7 14 421-434 2-15 (33)
297 PF04558 tRNA_synt_1c_R1: Glut 22.2 58 0.0013 27.3 1.8 47 369-416 83-129 (164)
298 PF01885 PTS_2-RNA: RNA 2'-pho 22.2 1.4E+02 0.003 25.6 4.1 34 382-415 27-60 (186)
299 smart00367 LRR_CC Leucine-rich 22.1 62 0.0013 17.3 1.3 14 151-164 1-14 (26)
300 PRK00819 RNA 2'-phosphotransfe 21.6 1.6E+02 0.0035 25.1 4.3 33 345-378 28-60 (179)
301 PRK00523 hypothetical protein; 21.4 2.1E+02 0.0045 20.2 4.0 32 385-416 37-68 (72)
302 COG4359 Uncharacterized conser 21.4 4.1E+02 0.0088 22.9 6.4 11 276-287 9-19 (220)
303 PF02761 Cbl_N2: CBL proto-onc 20.9 3.3E+02 0.0072 20.0 5.1 50 312-362 21-70 (85)
304 PRK15330 cell invasion protein 20.7 6.3E+02 0.014 23.8 8.1 83 351-433 189-291 (343)
305 PLN02223 phosphoinositide phos 20.2 4.2E+02 0.0091 27.0 7.4 68 331-399 13-92 (537)
306 cd04411 Ribosomal_P1_P2_L12p R 20.1 4.1E+02 0.0089 20.4 5.9 43 388-435 17-59 (105)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.87 E-value=6.7e-21 Score=154.83 Aligned_cols=145 Identities=33% Similarity=0.539 Sum_probs=126.1
Q ss_pred cceecccchHHHHHhhhcccc--CCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947 257 KVFTFKTPYLEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK 334 (441)
Q Consensus 257 ~~~l~~~~~~~l~~~f~~~d~--~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~ 334 (441)
...++.+++++++++|..+|. +|.| +..++..+++.++..++..++.+++
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I-~~~el~~ilr~lg~~~s~~ei~~l~--------------------------- 62 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLI-DRNELGKILRSLGFNPSEAEINKLF--------------------------- 62 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCC-cHHHHHHHHHHcCCCCcHHHHHHHH---------------------------
Confidence 456788999999999999998 4899 7899999999888666555555544
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 414 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~ 414 (441)
..+|. +.+.|++.+|..+|.........+++++.+|+.||.|+||+|+..|++++++.+|..+++++++.+++
T Consensus 63 ------~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~ 135 (160)
T COG5126 63 ------EEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLK 135 (160)
T ss_pred ------HhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 45777 78888888888888887767777899999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeHHHHHHHHhcc
Q psy2947 415 EANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 415 ~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.+|.|++|.|+|++|++.+...
T Consensus 136 ~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 136 EYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred hcCCCCCceEeHHHHHHHHhcc
Confidence 9999999999999999987653
No 2
>KOG0027|consensus
Probab=99.85 E-value=4.6e-20 Score=154.06 Aligned_cols=142 Identities=34% Similarity=0.598 Sum_probs=119.5
Q ss_pred cccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947 261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD 338 (441)
Q Consensus 261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 338 (441)
+..+...++++|..+|.+ |+| +..+++.+++.++..++.. ++..
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i-~~~el~~~lr~lg~~~t~~---------------------------------el~~ 48 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKI-SVEELGAVLRSLGQNPTEE---------------------------------ELRD 48 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCCCCCHH---------------------------------HHHH
Confidence 356678888889888876 778 7888988888888655444 4455
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhccCCCC----hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947 339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 414 (441)
Q Consensus 339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~ 414 (441)
++..+|.|++|.|+++||..++......... .++++++|+.||+|++|+||.+||+++|..+|.+.+.++++.+++
T Consensus 49 ~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~ 128 (151)
T KOG0027|consen 49 LIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIR 128 (151)
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHH
Confidence 5556888999999999999988866543332 358999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeHHHHHHHHhcc
Q psy2947 415 EANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 415 ~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.+|.|+||.|+|++|+.+|...
T Consensus 129 ~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 129 EVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred hcCCCCCCeEeHHHHHHHHhcC
Confidence 9999999999999999998753
No 3
>KOG0028|consensus
Probab=99.83 E-value=3e-19 Score=141.08 Aligned_cols=147 Identities=33% Similarity=0.523 Sum_probs=130.9
Q ss_pred ccceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947 256 YKVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIP 333 (441)
Q Consensus 256 ~~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~ 333 (441)
....+++++.+.+++.|..+|.+ |+| +.+++..+++.+|..+...++.+++.+
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~i-D~~EL~vAmralGFE~~k~ei~kll~d------------------------ 77 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPDMAGKI-DVEELKVAMRALGFEPKKEEILKLLAD------------------------ 77 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccCCCCcc-cHHHHHHHHHHcCCCcchHHHHHHHHh------------------------
Confidence 34456678889999999999986 889 899999999999988777777666654
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 413 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~ 413 (441)
+|.++.|.|++++|+..+........+.+++..+|+.+|.|++|.|+..+|+.+++.+|+.++++++.+|+
T Consensus 78 ---------~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMI 148 (172)
T KOG0028|consen 78 ---------VDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMI 148 (172)
T ss_pred ---------hhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHH
Confidence 78889999999999998887766666889999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCceeHHHHHHHHhcc
Q psy2947 414 REANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 414 ~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.++|.|+||.|+-+||.+.|.+.
T Consensus 149 eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 149 EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999998764
No 4
>KOG0031|consensus
Probab=99.75 E-value=5.1e-17 Score=127.46 Aligned_cols=148 Identities=27% Similarity=0.456 Sum_probs=130.1
Q ss_pred CcCcccceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC
Q psy2947 252 DRSGYKVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA 329 (441)
Q Consensus 252 ~~~~~~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~ 329 (441)
..+.+...+++.+++++++.|..+|++ |.| +.++++.++..+|..++..++..+++...|.|+|--|+.++.....
T Consensus 18 asSnvFamf~q~QIqEfKEAF~~mDqnrDG~I-dkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~- 95 (171)
T KOG0031|consen 18 ASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFI-DKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLN- 95 (171)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhc-
Confidence 334456678899999999999999975 899 8999999999999999999999999998889888888888875432
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947 330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 409 (441)
Q Consensus 330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~ 409 (441)
+...++.|..+|+.||.+++|.|..+.++.+|...|.+++++++
T Consensus 96 ------------------------------------gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV 139 (171)
T KOG0031|consen 96 ------------------------------------GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEV 139 (171)
T ss_pred ------------------------------------CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHH
Confidence 33446788899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947 410 DQIFREANVTMNSKVRYEDFVKIACAPV 437 (441)
Q Consensus 410 ~~l~~~~d~d~dg~i~~~ef~~~l~~~~ 437 (441)
+.+++.+..|..|.++|.+|+.++.++-
T Consensus 140 ~~m~r~~p~d~~G~~dy~~~~~~ithG~ 167 (171)
T KOG0031|consen 140 DEMYREAPIDKKGNFDYKAFTYIITHGE 167 (171)
T ss_pred HHHHHhCCcccCCceeHHHHHHHHHccc
Confidence 9999999999999999999999998653
No 5
>KOG0617|consensus
Probab=99.74 E-value=4e-20 Score=149.27 Aligned_cols=157 Identities=26% Similarity=0.345 Sum_probs=109.8
Q ss_pred CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
+++++.|-||+| .+|+.+..+.+|+.|++++|+|..+|.+++.+++|+.|+++-|++. .+|.+|+.++.|+.|||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence 556666777777 4566677777777777777777777777777777777777777776 67777777777777777
Q ss_pred cCCCCC--ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947 137 DNNLLD--ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA 213 (441)
Q Consensus 137 ~~n~l~--~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~ 213 (441)
++|++. .+|+.|..+..|+.|+|++|.+ .-+|..++.+..+..+ ++.|.+..+|..++.|..|+.|.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndf----------e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF----------EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCc----------ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 777773 5676666677777777777775 3346666666666666 67777777777777777777777
Q ss_pred cccccCCCCCCCchhhh
Q psy2947 214 SKENFFEPGLFPGPLVD 230 (441)
Q Consensus 214 l~~n~~~~~~~p~~~~~ 230 (441)
+.+|.+.. +|..+..
T Consensus 180 iqgnrl~v--lppel~~ 194 (264)
T KOG0617|consen 180 IQGNRLTV--LPPELAN 194 (264)
T ss_pred cccceeee--cChhhhh
Confidence 77776654 5555443
No 6
>PTZ00183 centrin; Provisional
Probab=99.73 E-value=2.1e-16 Score=133.79 Aligned_cols=126 Identities=25% Similarity=0.425 Sum_probs=102.1
Q ss_pred hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388 (441)
Q Consensus 309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i 388 (441)
+++|.|+.+||..++.... .......+..+|+.+|.+++|.|+++||..++..........+.++.+|+.+|.+++|.|
T Consensus 29 ~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 29 DGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKI 107 (158)
T ss_pred CCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcC
Confidence 3444444444444444331 123455678888999999999999999999887654444556789999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 389 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 389 s~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
+.+||+.++...|..+++++++.+|..+|.+++|.|+|++|++++.+
T Consensus 108 ~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 108 SLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999865
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=3.6e-18 Score=185.47 Aligned_cols=196 Identities=27% Similarity=0.283 Sum_probs=102.4
Q ss_pred CCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCccCCCCccCCCC---------------C---CCCCCcccEEe
Q psy2947 6 KNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIW---------------I---PQYFSHAFLLS 67 (441)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~~~~~~c~~~~---------------~---~~~l~~L~~l~ 67 (441)
++.|..||++||+++. +|.+...+|+.. ..| |.| .|+.|...+ + ...+++|+.|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~---c~w-~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSS--ADV---CLW-QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCC--CCC---CcC-cceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEE
Confidence 5678899999999985 555666788643 234 554 577776311 0 12467778888
Q ss_pred ccCCC----cCcccC-CCCCCCEEEccCCCCC-c----------------------CCcCccCCCCCcEEEccCCcCCCC
Q psy2947 68 LSYTP----IGRRIF-KCDTVEVLSLKSNSLT-S----------------------LPPDIGRLTNLRVLCLTDNCLQNA 119 (441)
Q Consensus 68 l~~n~----i~~~~~-~l~~L~~L~l~~n~l~-~----------------------lp~~~~~l~~L~~L~l~~n~l~~~ 119 (441)
|++|. +|..+. .+++|++|+|++|.++ . +|..++.+++|++|++++|.+. +
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~ 178 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-G 178 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-c
Confidence 88773 444443 5666666666666554 3 3333444444444444444444 3
Q ss_pred CCchhhhcCCCCCEEEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccc-
Q psy2947 120 SIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKK- 196 (441)
Q Consensus 120 ~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~- 196 (441)
.+|..++++++|++|+|++|.+. .+|..++++++|+.|++++|.+ .+.+|..+..++.+..+ +.+|.+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---------~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL---------SGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc---------CCcCChhHhcCCCCCEEECcCceec
Confidence 44444444444444444444442 3344444444444444444442 22334444444444444 444433
Q ss_pred ccCCchhhhhhhhccccccccc
Q psy2947 197 LHQPSRLQDLAVQSVIASKENF 218 (441)
Q Consensus 197 ~~~p~~l~~l~~l~~l~l~~n~ 218 (441)
..+|..+..+++|+.|+++.|.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred cccChhHhCCCCCCEEECcCCe
Confidence 2344444444444444444443
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.72 E-value=2.6e-16 Score=131.76 Aligned_cols=127 Identities=31% Similarity=0.571 Sum_probs=107.5
Q ss_pred HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 387 (441)
.+++|.|+++||..++..... ....+.+..+|+.+|.+++|.|+++||..++..........+.+..+|+.+|.+++|.
T Consensus 22 ~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~ 100 (149)
T PTZ00184 22 KDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGF 100 (149)
T ss_pred CCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCe
Confidence 456777777777777654422 3446788999999999999999999999988865433344567899999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
|+.+||+.++..+|..++.++++.++..+|.+++|.|+|+||+.++..
T Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred EeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 999999999999998899999999999999999999999999998753
No 9
>KOG0617|consensus
Probab=99.68 E-value=5.1e-18 Score=137.16 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=141.3
Q ss_pred ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCC
Q psy2947 76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155 (441)
Q Consensus 76 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~ 155 (441)
.++.+.+++.|.||+|+++.+|+.+..+.+|+.|++++|+|+ .+|.++.++++|++|+++-|++..+|.+|+.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 467788999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchhhhHHHh
Q psy2947 156 TVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAR 234 (441)
Q Consensus 156 ~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~ 234 (441)
.|+|.+|.+.- ..+|..+..+..+..+ +..|.+..+|+.++.|.+|++|.++.|.+-. +|..+..+...
T Consensus 106 vldltynnl~e--------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~l 175 (264)
T KOG0617|consen 106 VLDLTYNNLNE--------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRL 175 (264)
T ss_pred hhhcccccccc--------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHH
Confidence 99999999633 3578888889999888 8999999999999999999999999997765 89988886666
Q ss_pred hhcCCccccccc
Q psy2947 235 EYNQYHVCHYCN 246 (441)
Q Consensus 235 ~~~~~~~~~~~~ 246 (441)
...+..+..+..
T Consensus 176 relhiqgnrl~v 187 (264)
T KOG0617|consen 176 RELHIQGNRLTV 187 (264)
T ss_pred HHHhcccceeee
Confidence 666666554333
No 10
>KOG0030|consensus
Probab=99.64 E-value=7.1e-15 Score=113.49 Aligned_cols=139 Identities=31% Similarity=0.517 Sum_probs=114.4
Q ss_pred ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhC--C----CcccHHHHHHHHHhhcCCCC
Q psy2947 260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEK--G----GKLSFPDFLKVMHTHSKAED 331 (441)
Q Consensus 260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~--~----g~i~~~ef~~~~~~~~~~~~ 331 (441)
+++++..+++++|..||.. |.| +..++...++.+|..|+.+++.+...+. + .+|+|++|+.++......
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki-~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn-- 81 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKI-SGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN-- 81 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccc-cHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc--
Confidence 4567789999999999985 778 8999999999999999999999888642 2 467777777777644211
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy2947 332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ 411 (441)
Q Consensus 332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~ 411 (441)
+...+.+++-+.++.||++++|.|...|+++++..+|+.+++++++.
T Consensus 82 ---------------------------------k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~ 128 (152)
T KOG0030|consen 82 ---------------------------------KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEE 128 (152)
T ss_pred ---------------------------------cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHH
Confidence 12233455556788999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 412 IFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 412 l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
++.-. .|++|.|+|+.|++.+..
T Consensus 129 Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 129 LLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHccc-cccCCcCcHHHHHHHHhc
Confidence 99987 588999999999987643
No 11
>KOG0044|consensus
Probab=99.64 E-value=6.4e-15 Score=124.52 Aligned_cols=124 Identities=19% Similarity=0.349 Sum_probs=106.9
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCccc
Q psy2947 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP 389 (441)
Q Consensus 310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is 389 (441)
+.|.++.++|.++++.......+..-...+|+.||.|++|.|++.||..++.....+.. ++.++-+|+.||.|++|+|+
T Consensus 40 P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~-eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL-EEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH-HHHhhhhheeecCCCCceEc
Confidence 68999999999999998886667778899999999999999999999999988855544 67788889999999999999
Q ss_pred HHHHHHHHHHh----CC-------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 390 AKYLKHVLVNW----GE-------GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 390 ~~ef~~~l~~~----~~-------~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
++|+..+++.+ +. .-..+.++.+|+.+|.|+||.||++||.+...
T Consensus 119 ~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 119 KEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 99999888763 31 12456688999999999999999999998764
No 12
>KOG0444|consensus
Probab=99.62 E-value=1e-16 Score=153.41 Aligned_cols=161 Identities=21% Similarity=0.228 Sum_probs=124.2
Q ss_pred CCCcccEEeccCC-----CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCC
Q psy2947 59 YFSHAFLLSLSYT-----PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLT 132 (441)
Q Consensus 59 ~l~~L~~l~l~~n-----~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~ 132 (441)
.++.|+.+.+..| .||..|+.+..|+.|+||+|+++++|..+..-.++-.|+||+|+|. +||..+ .+|..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHh
Confidence 4566666666665 5788888888888899999998888888888888888899999887 888765 7888888
Q ss_pred EEEccCCCCCccchhhcCCCCCCEEEccCCcCcc-----Ccccc-----------cccccccccccccchhHHH-Hhhcc
Q psy2947 133 HLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYF-----KSTFM-----------WYHSDIHARIRSTSTRDEV-LRKQK 195 (441)
Q Consensus 133 ~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~-----~~~~~-----------~~~~~~p~~l~~l~~~~~~-l~~~~ 195 (441)
.||||+|++..+|+.+..+..|++|.|++|++.. .+.+. .....+|.++..+.++..+ ++.|.
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 8899999998888888888888888898888521 11111 1224567777777777777 78888
Q ss_pred cccCCchhhhhhhhcccccccccCCC
Q psy2947 196 KLHQPSRLQDLAVQSVIASKENFFEP 221 (441)
Q Consensus 196 ~~~~p~~l~~l~~l~~l~l~~n~~~~ 221 (441)
+..+|+.+..+++|..|++++|.+..
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCceee
Confidence 88888888888888888887776554
No 13
>KOG0037|consensus
Probab=99.62 E-value=1.2e-14 Score=121.91 Aligned_cols=154 Identities=16% Similarity=0.295 Sum_probs=94.5
Q ss_pred chHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcC-HHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947 264 PYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPT-IAELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPKEV 336 (441)
Q Consensus 264 ~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~-~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 336 (441)
....+...|...|++ |+| +.+|++.++...+.... ...+..|+ .+.+|+|.+.||.+++... ..|
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i-~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~W 126 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRI-LAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQW 126 (221)
T ss_pred ccHHHHHHHHhhCccccccc-cHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHH
Confidence 456778889888887 888 78888888876554332 22222222 2456666666666666544 456
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947 337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416 (441)
Q Consensus 337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~ 416 (441)
+.+|+.||+|++|.|+..|++.++..+ +-...++....+++.||..++|.|.+++|.+.+..+ ..+-++|++.
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~ 199 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRR 199 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHh
Confidence 666666666666666666666666655 333445555666666666666666666666666543 2344566666
Q ss_pred CCCCCC--ceeHHHHHHH
Q psy2947 417 NVTMNS--KVRYEDFVKI 432 (441)
Q Consensus 417 d~d~dg--~i~~~ef~~~ 432 (441)
|++.+| +|+|++|+.+
T Consensus 200 D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 200 DTAQQGSITISYDDFLQM 217 (221)
T ss_pred ccccceeEEEeHHHHHHH
Confidence 665555 3556666554
No 14
>PTZ00183 centrin; Provisional
Probab=99.62 E-value=2.2e-14 Score=121.34 Aligned_cols=140 Identities=29% Similarity=0.471 Sum_probs=120.4
Q ss_pred ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCC
Q psy2947 258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED 331 (441)
Q Consensus 258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~ 331 (441)
..+++.++.++...|..+|.+ |++ +..++..+++.++.......+..++. +++|.|+++||..++........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i-~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTI-DPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 345678889999999999975 889 89999999999887777777777664 68999999999998876655556
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
..+.++.+|+.+|.+++|.|+.+||..++... ......+++..+|..+|.+++|.|+++||..++..
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 67889999999999999999999999999866 34455788999999999999999999999999864
No 15
>KOG4194|consensus
Probab=99.60 E-value=1.2e-15 Score=145.21 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=141.6
Q ss_pred CCCcCCCCCccCCC-CccCCCCCCC---------CCCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcCCcCc
Q psy2947 35 PQTACQRNCSLEVG-GICSHIWIPQ---------YFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPDI 100 (441)
Q Consensus 35 ~~~~C~~~c~~~~~-~~c~~~~~~~---------~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~lp~~~ 100 (441)
+...||..|.|... ..|+..+++. ..+..+.|++++|.+. ..+.++++|+.+++..|.++.||...
T Consensus 42 ~~~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~ 121 (873)
T KOG4194|consen 42 DLSECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG 121 (873)
T ss_pred ccccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc
Confidence 34579999999643 5588755433 3456688999999654 45778999999999999999999888
Q ss_pred cCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccc
Q psy2947 101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHA 179 (441)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~ 179 (441)
....+|+.|+|.+|.|+ ..-.+++.-++.|+.||||.|.|+.|| ..|..-.++++|+|++|.+.... ..
T Consensus 122 ~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~---------~~ 191 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE---------TG 191 (873)
T ss_pred ccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc---------cc
Confidence 77888999999999998 344457888999999999999999998 66777789999999999986654 23
Q ss_pred cccccchhHHH-HhhcccccCCchh-hhhhhhcccccccccCCC
Q psy2947 180 RIRSTSTRDEV-LRKQKKLHQPSRL-QDLAVQSVIASKENFFEP 221 (441)
Q Consensus 180 ~l~~l~~~~~~-l~~~~~~~~p~~l-~~l~~l~~l~l~~n~~~~ 221 (441)
.+.++..+..+ +..|+++.+|... .+|+.|+.|++..|.+..
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 45666666666 8899999998654 559999999999987653
No 16
>KOG0037|consensus
Probab=99.58 E-value=1.4e-13 Score=115.60 Aligned_cols=120 Identities=16% Similarity=0.297 Sum_probs=111.9
Q ss_pred HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 387 (441)
++..|.|+-+|..+++..-....-..+.++.+..+||.+.+|+|+++||+++|..+ ..|+.+|+.+|+|++|.
T Consensus 68 ~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~ 140 (221)
T KOG0037|consen 68 RDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGT 140 (221)
T ss_pred ccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCc
Confidence 78889999999999998665566778999999999999999999999999999987 68999999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
|+..||++++..+|..++++-.+.+++++|..++|.|.|++|++++.
T Consensus 141 I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 141 IDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred ccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999977799999999999774
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.57 E-value=1.1e-13 Score=115.71 Aligned_cols=138 Identities=32% Similarity=0.514 Sum_probs=117.2
Q ss_pred eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCC
Q psy2947 259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI 332 (441)
Q Consensus 259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~ 332 (441)
.++..+...++..|..+|.+ |.| +.+++..++..++..+...++..++. +++|.|++++|..++.........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcC-CHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 35667888999999999875 888 89999999998887777777777765 578999999999998866544455
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
.+.+..+|+.+|.+++|.|+.+||..++... ......+.++.+|+.+|.+++|.|+++||..++.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 6789999999999999999999999999876 3344567899999999999999999999998874
No 18
>KOG0444|consensus
Probab=99.57 E-value=3.8e-16 Score=149.56 Aligned_cols=136 Identities=22% Similarity=0.246 Sum_probs=65.3
Q ss_pred CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCC
Q psy2947 74 GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQ 153 (441)
Q Consensus 74 ~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~ 153 (441)
|.++-.+.+|..+++|.|.+..+|..+..+.+|+.|+||+|+|+ .+.-..+...+|++|+||.|+++.+|.++..++.
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it--eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~k 292 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT--ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTK 292 (1255)
T ss_pred CCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee--eeeccHHHHhhhhhhccccchhccchHHHhhhHH
Confidence 33444444444455555555555544444555555555555554 4444444444445555555555555555555555
Q ss_pred CCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccC
Q psy2947 154 LDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFF 219 (441)
Q Consensus 154 L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~ 219 (441)
|+.|++.+|++.. ..||+.|+.|..+..+ ..+|.+.-+|+.+..+..|+.|.++.|.+
T Consensus 293 L~kLy~n~NkL~F--------eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 293 LTKLYANNNKLTF--------EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred HHHHHhccCcccc--------cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce
Confidence 5555555555422 2245555555444444 34444444444444444444444444443
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=4.5e-15 Score=161.41 Aligned_cols=160 Identities=24% Similarity=0.213 Sum_probs=107.0
Q ss_pred CCCcccEEeccCC----CcCcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947 59 YFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH 133 (441)
Q Consensus 59 ~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 133 (441)
.+++|+.|+|++| .+|..+..+++|++|+|++|.+. .+|..++.+++|++|++++|.+. +.+|..++++++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccE
Confidence 3566777777776 34566777888888888888887 77778888888888888888887 778888888888888
Q ss_pred EEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCc--c------c-------ccccccccccccccchhHHH-Hhhccc
Q psy2947 134 LYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKS--T------F-------MWYHSDIHARIRSTSTRDEV-LRKQKK 196 (441)
Q Consensus 134 L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~--~------~-------~~~~~~~p~~l~~l~~~~~~-l~~~~~ 196 (441)
|+|++|++. .+|..++.+++|++|++++|.+.... . + ..+.+.+|.++..++.+..+ +.+|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 888888884 67888888888888888888742110 0 0 00122334444444444444 444444
Q ss_pred -ccCCchhhhhhhhcccccccccC
Q psy2947 197 -LHQPSRLQDLAVQSVIASKENFF 219 (441)
Q Consensus 197 -~~~p~~l~~l~~l~~l~l~~n~~ 219 (441)
..+|..+..+++|+.+++++|.+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCcc
Confidence 23444555555555555555544
No 20
>KOG0034|consensus
Probab=99.56 E-value=1.6e-13 Score=116.20 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=74.9
Q ss_pred HHHHHHhhcCCCCCc-ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCC--HHH---
Q psy2947 336 VVDAFKAADTTKSGK-LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLS--SKE--- 408 (441)
Q Consensus 336 ~~~~f~~~D~d~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-~~~l~--~~~--- 408 (441)
...+++.||.+++|. |++++|..++.........+++++-+|+.||.+++|.|+.+|+.+++..+ +...+ ++.
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 456677777777777 88888888887776555555678888888888888888888888888774 33333 333
Q ss_pred -HHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 409 -VDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 409 -~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
++.+|.++|.|+||+|+++||.+++.+.
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 4567888888888888888888887654
No 21
>KOG0034|consensus
Probab=99.52 E-value=2.4e-13 Score=115.07 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=115.2
Q ss_pred ceecccchHHHHHhhhccccC---CCccCHHHHHHHHHHcCCCcCHHHHHH-HHHhCCCc-ccHHHHHHHHHhhcCCCCC
Q psy2947 258 VFTFKTPYLEFRECFFLFARN---GTIKTLDELSVIMRSLGMSPTIAELKK-YLAEKGGK-LSFPDFLKVMHTHSKAEDI 332 (441)
Q Consensus 258 ~~l~~~~~~~l~~~f~~~d~~---G~i~~~~el~~~~~~~~~~~~~~~~~~-~~~~~~g~-i~~~ef~~~~~~~~~~~~~ 332 (441)
..++.+++..+...|..++.. |++ +.+++..+. .+..++....+-. ++.+++|. |++++|+..+..+......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~l-t~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYL-TKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCcc-CHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 346678999999999999975 788 899999888 4445555555544 44566776 9999999999999888777
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC--h----HHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI--P----KEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~--~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
.++++-+|+.||.+++|.|+++|+.+++......... + +.++..|..+|.|+||.|+++||.+++..
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 7899999999999999999999999999887664443 3 34566799999999999999999999865
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=3.8e-14 Score=144.90 Aligned_cols=154 Identities=25% Similarity=0.251 Sum_probs=121.7
Q ss_pred CCCCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCC-CCCccCCCCccCCCCCCCCCCcccEEeccCC----CcCcccC
Q psy2947 4 PAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQ-RNCSLEVGGICSHIWIPQYFSHAFLLSLSYT----PIGRRIF 78 (441)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~-~~c~~~~~~~c~~~~~~~~l~~L~~l~l~~n----~i~~~~~ 78 (441)
.+.+.|+.||+.+|+++..+.. .+|++.+ |. ..|. |.|+.|..-.. .....++.|+|++| .+|..+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~---~~W~g~~---C~p~~~~-w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR---FGWNGDP---CVPQQHP-WSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc---CCCCCCC---CCCcccc-cccceeeccCC-CCceEEEEEECCCCCccccCCHHHh
Confidence 4567789999999998865432 2677654 63 3334 57999963211 11235788999988 4677888
Q ss_pred CCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCC-CccchhhcCC-CCCC
Q psy2947 79 KCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-DALPGFLLSM-PQLD 155 (441)
Q Consensus 79 ~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l-~~L~ 155 (441)
.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ |.+|..++++++|++|+|++|++ +.+|..++.+ .++.
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 9999999999999998 88888999999999999999998 89999999999999999999999 5889777653 4677
Q ss_pred EEEccCCcCcc
Q psy2947 156 TVYRHGNHNYF 166 (441)
Q Consensus 156 ~L~l~~N~~~~ 166 (441)
.+++.+|...|
T Consensus 519 ~l~~~~N~~lc 529 (623)
T PLN03150 519 SFNFTDNAGLC 529 (623)
T ss_pred eEEecCCcccc
Confidence 88999998644
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.48 E-value=5.8e-13 Score=108.64 Aligned_cols=117 Identities=22% Similarity=0.332 Sum_probs=101.9
Q ss_pred HHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcC
Q psy2947 266 LEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT 345 (441)
Q Consensus 266 ~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~ 345 (441)
.++..+++ .-|+..+..++..++..++ . +.+.|+|++|..++..........++++++|+.||.
T Consensus 40 ~el~~ilr---~lg~~~s~~ei~~l~~~~d------------~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~ 103 (160)
T COG5126 40 NELGKILR---SLGFNPSEAEINKLFEEID------------A-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDK 103 (160)
T ss_pred HHHHHHHH---HcCCCCcHHHHHHHHHhcc------------C-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCC
Confidence 34444442 3466667788999998887 5 889999999999999998888899999999999999
Q ss_pred CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 346 TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 346 d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
|++|+|+..|++.++..+ +....+++++.+++.+|.|++|.|+++||++.+..
T Consensus 104 d~dG~Is~~eL~~vl~~l-ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 104 DHDGYISIGELRRVLKSL-GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCCceecHHHHHHHHHhh-cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999977 66677899999999999999999999999998754
No 24
>KOG4237|consensus
Probab=99.47 E-value=9.3e-15 Score=133.07 Aligned_cols=171 Identities=23% Similarity=0.256 Sum_probs=129.6
Q ss_pred CCcCCCCCccCC---C-CccCCCCCCCCCCcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEE
Q psy2947 36 QTACQRNCSLEV---G-GICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLC 110 (441)
Q Consensus 36 ~~~C~~~c~~~~---~-~~c~~~~~~~~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ 110 (441)
..+||..|.|.. + |.|+..|. .+||..+. .....++|..|+|+.||+. |+.+.+|+.||
T Consensus 34 ~~~CP~pC~Cs~~~g~~VdCr~~GL--------------~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLd 97 (498)
T KOG4237|consen 34 ASACPAPCTCSDVEGGIVDCRGKGL--------------TEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLD 97 (498)
T ss_pred cccCCCCcccCCCCCceEEccCCCc--------------ccCcccCC--CcceEEEeccCCcccCChhhccchhhhceec
Confidence 447999999976 2 78987664 24554443 3567889999999999988 99999999999
Q ss_pred ccCCcCCCCCCchhhhcCCCCCEEEcc-CCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhH
Q psy2947 111 LTDNCLQNASIPFTLTFCKNLTHLYLD-NNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRD 188 (441)
Q Consensus 111 l~~n~l~~~~~p~~~~~l~~L~~L~l~-~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~ 188 (441)
||+|.|+ ..-|..|.++++|..|-+- +|+|+.+| ..|+++.+|+.|.+.-|++.|.. ...+..++.+.
T Consensus 98 LS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir---------~~al~dL~~l~ 167 (498)
T KOG4237|consen 98 LSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR---------QDALRDLPSLS 167 (498)
T ss_pred ccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh---------HHHHHHhhhcc
Confidence 9999998 5667788999988777555 48999999 78899999999888888865543 45667777776
Q ss_pred HH-HhhcccccCCc-hhhhhhhhcccccccccCCCCCCCchhhhHH
Q psy2947 189 EV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLVDYI 232 (441)
Q Consensus 189 ~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l 232 (441)
.+ +-.|.+..++. ++..+..++.+.+..|++-+.+--.++..++
T Consensus 168 lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 168 LLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 66 66677777775 7888889999999999866543333444433
No 25
>KOG0472|consensus
Probab=99.46 E-value=2.5e-14 Score=130.60 Aligned_cols=160 Identities=24% Similarity=0.315 Sum_probs=116.3
Q ss_pred CCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCC----------------
Q psy2947 58 QYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN---------------- 118 (441)
Q Consensus 58 ~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~---------------- 118 (441)
.++.+|..|||..| ++|..++.+++|.+||+|+|.|+.+|.+++++ +|+.|.+.||.+..
T Consensus 249 ~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 46889999999999 67899999999999999999999999999999 89988888876541
Q ss_pred --------------------------------------------------------------------------------
Q psy2947 119 -------------------------------------------------------------------------------- 118 (441)
Q Consensus 119 -------------------------------------------------------------------------------- 118 (441)
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence
Q ss_pred -----------------CCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccc
Q psy2947 119 -----------------ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARI 181 (441)
Q Consensus 119 -----------------~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l 181 (441)
+.+|..+..+++|+.|+|++|.+..+|..++.+..|+.|+++.|++.+. |..+
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l----------P~~~ 477 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML----------PECL 477 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc----------hHHH
Confidence 3344556677889999999999999998888999999999999987443 4444
Q ss_pred cccchhHHH-HhhcccccCCch-hhhhhhhcccccccccCCCCCCCchhhh
Q psy2947 182 RSTSTRDEV-LRKQKKLHQPSR-LQDLAVQSVIASKENFFEPGLFPGPLVD 230 (441)
Q Consensus 182 ~~l~~~~~~-l~~~~~~~~p~~-l~~l~~l~~l~l~~n~~~~~~~p~~~~~ 230 (441)
..+..+..+ .++|++..+++. +.++.+|.+|++.+|.+.. +|..+..
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~--IPp~Lgn 526 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ--IPPILGN 526 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh--CChhhcc
Confidence 444444444 233445444443 5555555555555554332 4444433
No 26
>KOG0044|consensus
Probab=99.46 E-value=8.8e-13 Score=111.58 Aligned_cols=139 Identities=18% Similarity=0.231 Sum_probs=110.5
Q ss_pred eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHH-HH----HhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947 259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKK-YL----AEKGGKLSFPDFLKVMHTHSKAEDIP 333 (441)
Q Consensus 259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~-~~----~~~~g~i~~~ef~~~~~~~~~~~~~~ 333 (441)
.++..+++.+...|..-.+.|.+ +.++++.+++.....-....+.. ++ .+++|.|+++||+..+...... ..+
T Consensus 22 ~f~~~ei~~~Yr~Fk~~cP~G~~-~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-t~e 99 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNECPSGRL-TLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG-TLE 99 (193)
T ss_pred CCCHHHHHHHHHHhcccCCCCcc-CHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-cHH
Confidence 45567777777888777778999 78999999999887444444433 22 4789999999999999876443 567
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc---c-------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHS---K-------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~-------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
+.+.++|+.||.|++|+|+++|+..++.... . ....++.+..+|+.+|.|+||.||.+||....++
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 8888999999999999999999998776532 1 1112467888999999999999999999999865
No 27
>KOG0036|consensus
Probab=99.45 E-value=1.9e-12 Score=118.18 Aligned_cols=118 Identities=14% Similarity=0.294 Sum_probs=92.8
Q ss_pred CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccH
Q psy2947 311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPA 390 (441)
Q Consensus 311 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~ 390 (441)
+|.++..+..+.+.....+....+-.+.+|+.+|.|.+|.+|++||+..+... +.++..+|+..|.+.||.|+.
T Consensus 28 ~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~i~~ 101 (463)
T KOG0036|consen 28 DGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGKIDP 101 (463)
T ss_pred CCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHHHhhhccccCCccCH
Confidence 33333333333333333333445566777888999999999999999988876 567888999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 391 KYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 391 ~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
+|+.+.++++|..+++++++.+|+.+|+++++.|+++||..++.
T Consensus 102 ~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 102 NEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 99999999999999999999999999999999999999988763
No 28
>KOG0027|consensus
Probab=99.42 E-value=1.8e-12 Score=108.18 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-----CHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL-----SSK 407 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l-----~~~ 407 (441)
..+++.+|..||.|++|.|+..|+..+++.+ ....+..++..+++.+|.+++|.|+++||..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 4578999999999999999999999999998 4556688999999999999999999999999999865332 345
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 408 EVDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
++.++|+.+|.|++|.|+.+|+.++|.+-
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 89999999999999999999999998653
No 29
>KOG4194|consensus
Probab=99.38 E-value=7e-14 Score=133.29 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=88.9
Q ss_pred CCCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCcCCCCCCc-hhhhcCCCCC
Q psy2947 59 YFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLT 132 (441)
Q Consensus 59 ~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~ 132 (441)
.+.++++|+|+.|.+. ..+++++.|+.|+||+|.|..+ ++++...++|++|+|++|+|+ .++ .++..|+.|+
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~--~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT--RLDEGSFRVLSQLE 344 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc--cCChhHHHHHHHhh
Confidence 3455555555555432 3455556666666666665533 333555556666666666665 333 2455555666
Q ss_pred EEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC-chhhhhhhh
Q psy2947 133 HLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP-SRLQDLAVQ 209 (441)
Q Consensus 133 ~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p-~~l~~l~~l 209 (441)
.|.|+.|.+..+- .+|..+++|+.|+|++|.+ .|....--..+..++.+..+ +.+|++..+| ..+..|..|
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l------s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL------SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeE------EEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 6666666665554 4455556666666666653 22222222345556777777 7788887777 466778888
Q ss_pred cccccccccCC
Q psy2947 210 SVIASKENFFE 220 (441)
Q Consensus 210 ~~l~l~~n~~~ 220 (441)
+.|++.+|.+.
T Consensus 419 E~LdL~~Naia 429 (873)
T KOG4194|consen 419 EHLDLGDNAIA 429 (873)
T ss_pred ceecCCCCcce
Confidence 88888877654
No 30
>KOG0472|consensus
Probab=99.37 E-value=2e-14 Score=131.13 Aligned_cols=167 Identities=25% Similarity=0.245 Sum_probs=98.0
Q ss_pred CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
+.+|..++.++| .+|+.++.+..|..|+..+|+++.+|++++.+.+|..|++.+|.++ .+|+....++.|++||.
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhccc
Confidence 344455555555 3455555555666666666666666666666666666666666665 55655555677777777
Q ss_pred cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccc------------ccccccccc-ccchhHHH-HhhcccccCCch
Q psy2947 137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWY------------HSDIHARIR-STSTRDEV-LRKQKKLHQPSR 202 (441)
Q Consensus 137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~------------~~~~p~~l~-~l~~~~~~-l~~~~~~~~p~~ 202 (441)
..|-++.+|..++.+.+|..|++..|.+...+.|..- ...+|.... .++.+..+ ++.|++..+|..
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH
Confidence 7777777777777777777777777776554433210 011232222 34444444 566666666666
Q ss_pred hhhhhhhcccccccccCCCCCCCchhhh
Q psy2947 203 LQDLAVQSVIASKENFFEPGLFPGPLVD 230 (441)
Q Consensus 203 l~~l~~l~~l~l~~n~~~~~~~p~~~~~ 230 (441)
+.-|.+|..|++++|.++. +|.++..
T Consensus 271 ~clLrsL~rLDlSNN~is~--Lp~sLgn 296 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISS--LPYSLGN 296 (565)
T ss_pred HHHhhhhhhhcccCCcccc--CCccccc
Confidence 6666666666666665443 5555444
No 31
>KOG0028|consensus
Probab=99.34 E-value=1.4e-11 Score=97.92 Aligned_cols=119 Identities=22% Similarity=0.337 Sum_probs=102.4
Q ss_pred HHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCC
Q psy2947 268 FRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 347 (441)
Q Consensus 268 l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~ 347 (441)
..++...+...|.-...+++..++..++ +++.|.|++++|...+........+.++++.+|+.+|.|+
T Consensus 52 ~~EL~vAmralGFE~~k~ei~kll~d~d------------k~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~ 119 (172)
T KOG0028|consen 52 VEELKVAMRALGFEPKKEEILKLLADVD------------KEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDK 119 (172)
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHhhh------------hccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccC
Confidence 3344333455565546788888887666 8899999999999999988887779999999999999999
Q ss_pred CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 348 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
+|.|+..+|+.++..+ +...+++++.+++..+|.|++|.|+.+||.++|+.
T Consensus 120 ~Gkis~~~lkrvakeL-genltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 120 TGKISQRNLKRVAKEL-GENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred CCCcCHHHHHHHHHHh-CccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999998 56677899999999999999999999999999874
No 32
>KOG4223|consensus
Probab=99.31 E-value=2.2e-11 Score=108.40 Aligned_cols=164 Identities=19% Similarity=0.295 Sum_probs=117.2
Q ss_pred HHHHhhhcccc--CCCccCHHHHHHHHHHcC-------CCcCHHHHHHHH-----------HhCCCcccHHHHHHHHHhh
Q psy2947 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLG-------MSPTIAELKKYL-----------AEKGGKLSFPDFLKVMHTH 326 (441)
Q Consensus 267 ~l~~~f~~~d~--~G~i~~~~el~~~~~~~~-------~~~~~~~~~~~~-----------~~~~g~i~~~ef~~~~~~~ 326 (441)
+..+.|..+|+ +|.| +.++....+.... ........+++. .+++|.++.+||..++..-
T Consensus 114 ~~~~~~~~~d~~~Dg~i-~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE 192 (325)
T KOG4223|consen 114 EAARRWDEYDKNKDGFI-TWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE 192 (325)
T ss_pred HHHHHHHHhccCcccee-eHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence 34445555554 4888 6676655544321 011112222222 3689999999999998755
Q ss_pred cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCCh----HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC
Q psy2947 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP----KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE 402 (441)
Q Consensus 327 ~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~ 402 (441)
..+.+..=.+++...-.|+|+||.|+++||..-|.......... .+-+..+...|+|+||+++.+|++.++..-+.
T Consensus 193 e~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~ 272 (325)
T KOG4223|consen 193 EHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ 272 (325)
T ss_pred hcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc
Confidence 44444444577778889999999999999999777654322211 13345677789999999999999999988777
Q ss_pred CCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 403 GLSSKEVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 403 ~l~~~~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
.....++..++...|.|+||++|++|-+.
T Consensus 273 d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 273 DHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 78889999999999999999999999765
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=4e-12 Score=107.31 Aligned_cols=102 Identities=32% Similarity=0.368 Sum_probs=43.7
Q ss_pred CCcccEEeccCCCcC--cccC-CCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEE
Q psy2947 60 FSHAFLLSLSYTPIG--RRIF-KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLY 135 (441)
Q Consensus 60 l~~L~~l~l~~n~i~--~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~ 135 (441)
...++.|+|++|.|+ +.+. .+.+|+.|+|++|.|+.++ ++..++.|++|++++|+|+ .++..+ ..+++|++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEE
Confidence 456899999999877 4565 4789999999999999885 6888999999999999998 787666 4689999999
Q ss_pred ccCCCCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947 136 LDNNLLDALP--GFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 136 l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~ 164 (441)
+++|+|..+. ..+..+++|+.|++.+|++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999997765 5677899999999999995
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.28 E-value=1.2e-11 Score=91.84 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 371 KEVVDAFKAADT-TKSGTVPAKYLKHVLVN-WGEGLSS-KEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 371 ~~~~~~f~~~D~-~~~G~is~~ef~~~l~~-~~~~l~~-~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
..+..+|+.||. +++|+|+..||+.+|+. +|..+++ ++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 456789999999 99999999999999998 8877888 89999999999999999999999998854
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.25 E-value=2.7e-11 Score=85.82 Aligned_cols=61 Identities=28% Similarity=0.578 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~----~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
++.+|+.+|+|++|+|+.+||+.+++.++...+++. ++.+|+.+|.|+||.|+++||+++|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678899999999999999999999999886665544 4555999999999999999998875
No 36
>KOG0532|consensus
Probab=99.22 E-value=6.2e-13 Score=126.63 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
+......+|+.| .+|...+.+-.|+.|.|..|.|..+|..+.++..|..|||+.|+++ .+|..+..|+ |+.|.+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEE
Confidence 444455566666 3454444455555555555555555555555555555555555555 5555554444 555555
Q ss_pred cCCCCCccchhhcCCCCCCEEEccCCcCccCcc-ccc------------ccccccccccccchhHHHHhhcccccCCchh
Q psy2947 137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKST-FMW------------YHSDIHARIRSTSTRDEVLRKQKKLHQPSRL 203 (441)
Q Consensus 137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~-~~~------------~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l 203 (441)
++|+++.+|..++.+..|..|+.+.|.+..... +.. -...+|..++.|+....-++.|++..+|-.+
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhh
Confidence 555555555555555555555555555421100 000 0022344444443333235555555566556
Q ss_pred hhhhhhcccccccccCC
Q psy2947 204 QDLAVQSVIASKENFFE 220 (441)
Q Consensus 204 ~~l~~l~~l~l~~n~~~ 220 (441)
.+|..|++|-|.+|++.
T Consensus 231 r~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhheeeeeccCCCC
Confidence 66666666666666554
No 37
>KOG0532|consensus
Probab=99.21 E-value=3e-13 Score=128.69 Aligned_cols=133 Identities=26% Similarity=0.333 Sum_probs=117.7
Q ss_pred CCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947 59 YFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135 (441)
Q Consensus 59 ~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 135 (441)
++..|+.++|+.| .+|..++.|+ |+.|-+++|+++.+|..++.+.+|..||.+.|.+. .+|+.++.+.+|+.|.
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHH
Confidence 4788899999999 4678888875 89999999999999999999999999999999998 9999999999999999
Q ss_pred ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhh
Q psy2947 136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQD 205 (441)
Q Consensus 136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~ 205 (441)
+..|++..+|..+..| .|..||++.|++ ..||-.++.+..+..+ |++|.+..-|..+..
T Consensus 196 vrRn~l~~lp~El~~L-pLi~lDfScNki----------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSL-PLIRLDFSCNKI----------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred HhhhhhhhCCHHHhCC-ceeeeecccCce----------eecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 9999999999888855 588999999997 4578899999999988 899998877765543
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=5.7e-11 Score=122.00 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=32.4
Q ss_pred hHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchh
Q psy2947 187 RDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPL 228 (441)
Q Consensus 187 ~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~ 228 (441)
+..+ +.+|.++.+|..+..++.|..+++++|++.. ..|..+
T Consensus 424 L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~-~~~~~L 465 (788)
T PRK15387 424 LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE-RTLQAL 465 (788)
T ss_pred hhhhhhccCcccccChHHhhccCCCeEECCCCCCCc-hHHHHH
Confidence 3445 7889999999999999999999999999873 344443
No 39
>KOG0618|consensus
Probab=99.18 E-value=3.1e-12 Score=128.32 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=72.1
Q ss_pred hhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch
Q psy2947 125 LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR 202 (441)
Q Consensus 125 ~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~ 202 (441)
+.+..+|+.|+|++|+|..+| ..+.++..|+.|+||+|++ ..+|..+..+..++.+ ...|.+..+| .
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL----------~~Lp~tva~~~~L~tL~ahsN~l~~fP-e 447 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL----------TTLPDTVANLGRLHTLRAHSNQLLSFP-E 447 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh----------hhhhHHHHhhhhhHHHhhcCCceeech-h
Confidence 344567888888888888888 5567778888888888886 4467778888888888 6678888888 8
Q ss_pred hhhhhhhcccccccccCCCCCCCchh
Q psy2947 203 LQDLAVQSVIASKENFFEPGLFPGPL 228 (441)
Q Consensus 203 l~~l~~l~~l~l~~n~~~~~~~p~~~ 228 (441)
+..++.|+++|++.|.+....+|..+
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhC
Confidence 88999999999999988876655444
No 40
>KOG4223|consensus
Probab=99.14 E-value=3.6e-10 Score=100.81 Aligned_cols=129 Identities=15% Similarity=0.226 Sum_probs=99.6
Q ss_pred HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-------cCCCCh------HHHH
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-------KAEDIP------KEVV 374 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-------~~~~~~------~~~~ 374 (441)
.+++|.|+..|....+...... ...++..+.|..+|.|.+|.|+++|+........ ...... ..-+
T Consensus 88 ~~~Dgfv~~~El~~wi~~s~k~-~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe 166 (325)
T KOG4223|consen 88 SDSDGFVTESELKAWIMQSQKK-YVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDE 166 (325)
T ss_pred CCCCCceeHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHH
Confidence 5678999999998887755332 3345677778889999999999999988776431 111110 1234
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947 375 DAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 437 (441)
Q Consensus 375 ~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~ 437 (441)
..|+..|.|+||.+|.+||..++..-. ..+.+-.+++-+..+|+|+||.|+++||+.-|.+..
T Consensus 167 ~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 167 ERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 579999999999999999999998643 446677788999999999999999999999887654
No 41
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=4e-10 Score=112.64 Aligned_cols=100 Identities=13% Similarity=0.312 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHH---HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKE---VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 409 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~---~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~ 409 (441)
.++++++|..+|.|++|.+ +..++..+......+++ ++.+|+.+|.|++|.|+++||..+|..++...+++++
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 3668888999999999997 55556555312333343 7899999999999999999999999988877889999
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 410 DQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 410 ~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
..+|+.+|.|++|.|+++||.++|...
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999999988763
No 42
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=2.1e-10 Score=118.47 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=99.9
Q ss_pred CcccEEeccCCC---cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947 61 SHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137 (441)
Q Consensus 61 ~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 137 (441)
++|+.|+|++|. +|..+. ++|+.|++++|+++.+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT--ELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC--cCChhHh--CCCCEEECc
Confidence 578899999984 454443 589999999999998887654 47899999999997 8887764 578999999
Q ss_pred CCCCCccchhhcCCCCCCEEEccCCcCccCccccccccccccccccc---------------chhHHH-HhhcccccCCc
Q psy2947 138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST---------------STRDEV-LRKQKKLHQPS 201 (441)
Q Consensus 138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l---------------~~~~~~-l~~~~~~~~p~ 201 (441)
+|+|+.+|..+. ++|+.|++++|.+...+. .+|..+..+ +.+..+ +.+|.+..+|.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~------~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPA------HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA 342 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcc------cchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh
Confidence 999988887554 579999999998754321 112111110 122222 44555555665
Q ss_pred hhhhhhhhcccccccccCCCCCCCch
Q psy2947 202 RLQDLAVQSVIASKENFFEPGLFPGP 227 (441)
Q Consensus 202 ~l~~l~~l~~l~l~~n~~~~~~~p~~ 227 (441)
.+. ++|+.|++++|.+.. +|..
T Consensus 343 ~l~--~sL~~L~Ls~N~L~~--LP~~ 364 (754)
T PRK15370 343 SLP--PELQVLDVSKNQITV--LPET 364 (754)
T ss_pred hhc--CcccEEECCCCCCCc--CChh
Confidence 443 467777777776653 4443
No 43
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.13 E-value=2.6e-10 Score=84.92 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=58.4
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
..+.++|+.|| .+|+| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46778999998 79999 5999999999998 888889999999999999999999999999988754
No 44
>KOG0036|consensus
Probab=99.12 E-value=1.7e-09 Score=99.26 Aligned_cols=159 Identities=14% Similarity=0.255 Sum_probs=124.2
Q ss_pred ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCC-cCHH----HHHHHHHhCCCcccHHHHHHHHHhhcCCCCC
Q psy2947 260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMS-PTIA----ELKKYLAEKGGKLSFPDFLKVMHTHSKAEDI 332 (441)
Q Consensus 260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~-~~~~----~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~ 332 (441)
..++...+++.+|..+|.+ |++ +..++...+..+... +... .+..++.+.||.++|+||...+.. .
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~-d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~ 80 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQV-DLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K 80 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCce-eHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h
Confidence 3456677899999999974 888 899999888888755 3333 334444578999999999999984 4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 412 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l 412 (441)
+.++..+|...|.+.||.|+..|+.+.++.+ +-+..+++...+|+..|+++++.|+++|+++.+.- .+++.++.+
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll----~p~s~i~di 155 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL----YPESDLEDI 155 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc----CChhHHHHH
Confidence 6789999999999999999999999999988 44566788889999999999999999999999853 235556555
Q ss_pred HHH------hCCCCCCceeHHHHHH
Q psy2947 413 FRE------ANVTMNSKVRYEDFVK 431 (441)
Q Consensus 413 ~~~------~d~d~dg~i~~~ef~~ 431 (441)
+.. +|...+..|. |+|..
T Consensus 156 ~~~W~h~~~idigE~~~iP-dg~s~ 179 (463)
T KOG0036|consen 156 YDFWRHVLLIDIGEDAVLP-DGDSK 179 (463)
T ss_pred HHhhhhheEEEccccccCC-cchHH
Confidence 433 4455566666 55544
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=3.3e-10 Score=116.99 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=22.1
Q ss_pred hHHH-HhhcccccCCchhhhh----hhhcccccccccCCC
Q psy2947 187 RDEV-LRKQKKLHQPSRLQDL----AVQSVIASKENFFEP 221 (441)
Q Consensus 187 ~~~~-l~~~~~~~~p~~l~~l----~~l~~l~l~~n~~~~ 221 (441)
+..+ +.+|.+..+|..+..+ +.+..+++.+|++..
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 3334 6667777777655443 556677777777653
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7.7e-11 Score=99.50 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=41.5
Q ss_pred cCCCCCCCEEEccCCCCCcCCcCcc-CCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhh-cCCCCC
Q psy2947 77 IFKCDTVEVLSLKSNSLTSLPPDIG-RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFL-LSMPQL 154 (441)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L 154 (441)
+.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|.|+ .++ .+..++.|+.|++++|.|+.++..+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 345567899999999999874 465 5899999999999998 775 5888999999999999999997655 468999
Q ss_pred CEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhcccccccccCCC
Q psy2947 155 DTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEP 221 (441)
Q Consensus 155 ~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~ 221 (441)
+.|++++|++..... + ..+..++.|+.|++.+||+..
T Consensus 91 ~~L~L~~N~I~~l~~-----------------------------l-~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNNKISDLNE-----------------------------L-EPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS---SCCC-----------------------------C-GGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCCcCCChHH-----------------------------h-HHHHcCCCcceeeccCCcccc
Confidence 999999999643321 1 145566777777777777653
No 47
>KOG0618|consensus
Probab=99.09 E-value=1.2e-11 Score=124.13 Aligned_cols=152 Identities=27% Similarity=0.329 Sum_probs=96.3
Q ss_pred CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
..+|+++++++| .+|..++.+.+|+.|++.+|+++.+|..+..+++|+.|.+.+|.+. .+|.....+++|++|+|
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~--yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE--YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh--hCCCcccccceeeeeee
Confidence 356777777777 5677777777777777777777666655555555555555555554 45554455555555555
Q ss_pred cCCCCCccch--------------------------------------------------hhcCCCCCCEEEccCCcCcc
Q psy2947 137 DNNLLDALPG--------------------------------------------------FLLSMPQLDTVYRHGNHNYF 166 (441)
Q Consensus 137 ~~n~l~~lp~--------------------------------------------------~~~~l~~L~~L~l~~N~~~~ 166 (441)
..|+|..+|. .+.+.++|+.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 5555544442 1234455666666666642
Q ss_pred Ccccccccccccc-cccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCC
Q psy2947 167 KSTFMWYHSDIHA-RIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFP 225 (441)
Q Consensus 167 ~~~~~~~~~~~p~-~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p 225 (441)
.+|. .+.++..+..+ +++|++..+|.++..+..|.+|...+|.+.. +|
T Consensus 397 ---------~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--fP 446 (1081)
T KOG0618|consen 397 ---------SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--FP 446 (1081)
T ss_pred ---------cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--ch
Confidence 2343 46667777777 7888888888888888888888777776655 66
No 48
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=1.8e-10 Score=118.45 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=8.7
Q ss_pred CCCCCcccEEeccCC
Q psy2947 57 PQYFSHAFLLSLSYT 71 (441)
Q Consensus 57 ~~~l~~L~~l~l~~n 71 (441)
|..+++|+.|++++|
T Consensus 238 P~lp~~Lk~LdLs~N 252 (788)
T PRK15387 238 PALPPELRTLEVSGN 252 (788)
T ss_pred CCCCCCCcEEEecCC
Confidence 333456666666666
No 49
>KOG0038|consensus
Probab=99.07 E-value=8.7e-10 Score=86.01 Aligned_cols=108 Identities=23% Similarity=0.310 Sum_probs=66.3
Q ss_pred HHHcCCCcCHHHHHHHHH-hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC
Q psy2947 291 MRSLGMSPTIAELKKYLA-EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369 (441)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~ 369 (441)
|..+...|....+.+.+. ++.|.+++++|+.+++.+....+-.-++..+|+.||-|+|+.|..+++...+..+.+.+..
T Consensus 64 MPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 64 MPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred ChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 444555555555555553 5677777777777776665544444556666777777777777777766666666555555
Q ss_pred hHHH----HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 370 PKEV----VDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 370 ~~~~----~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
++++ +.++...|.||||.++++||.+++.
T Consensus 144 ~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 144 DEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 4432 3445566666666666666666554
No 50
>KOG1259|consensus
Probab=99.06 E-value=3.6e-11 Score=106.22 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=104.5
Q ss_pred cCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCE
Q psy2947 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDT 156 (441)
Q Consensus 77 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~ 156 (441)
+.....|+.||||+|.|+.+..+..-++.++.|++|+|.|. .+.. ++.+++|++||||+|.++.+-+.-..+-+++.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee--eehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34456788888999888888888888888888999988887 5543 78888888889988888877655556777888
Q ss_pred EEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC--chhhhhhhhcccccccccCCCCCCCchhhhHHH
Q psy2947 157 VYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP--SRLQDLAVQSVIASKENFFEPGLFPGPLVDYIA 233 (441)
Q Consensus 157 L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p--~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~ 233 (441)
|.|++|.+... ..++.+-.+.++ +++|++..+- ..+++|+.|+.+.+.+||+.. +|..-.+.++
T Consensus 357 L~La~N~iE~L-----------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~--~vdYRTKVLa 423 (490)
T KOG1259|consen 357 LKLAQNKIETL-----------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG--SVDYRTKVLA 423 (490)
T ss_pred eehhhhhHhhh-----------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc--cchHHHHHHH
Confidence 88888885332 234444445555 6666664443 468899999999999999875 6665555554
Q ss_pred hh
Q psy2947 234 RE 235 (441)
Q Consensus 234 ~~ 235 (441)
+.
T Consensus 424 ~F 425 (490)
T KOG1259|consen 424 RF 425 (490)
T ss_pred HH
Confidence 44
No 51
>KOG4237|consensus
Probab=99.06 E-value=1e-11 Score=113.52 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=78.2
Q ss_pred hhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cc
Q psy2947 125 LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PS 201 (441)
Q Consensus 125 ~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~ 201 (441)
|..|++|+.|+|++|+|+.|- .+|.+...++.|+|..|++.... ...+..++.+..+ +.+|+++.+ |.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~---------~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS---------SGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH---------HHhhhccccceeeeecCCeeEEEecc
Confidence 455666777777777776664 56666677777777777753322 1235556666666 788888554 77
Q ss_pred hhhhhhhhcccccccccCCCCCCCchhhhHHHhhhcCCccccccc
Q psy2947 202 RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCN 246 (441)
Q Consensus 202 ~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~~~~~~~~~~~~~ 246 (441)
.+..+..|..+.+-.|+|.+.+--+++.+|+.... ....+.|.
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~~Cq 383 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNPRCQ 383 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCCCCC
Confidence 88889999999999999999988899999997776 33444454
No 52
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.05 E-value=3.2e-10 Score=80.27 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=53.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC---CChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE---DIPKEVVDAFKAADTTKSGTVPAKYLKHVL 397 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~---~~~~~~~~~f~~~D~~~~G~is~~ef~~~l 397 (441)
+++++|+.+|.|++|+|+.+||..++....... ...+.+..+|+.+|+++||.|+++||.++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 368899999999999999999999999874321 123466777999999999999999999875
No 53
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.05 E-value=7.3e-10 Score=82.50 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=55.8
Q ss_pred HHHHHHHHhCC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 372 EVVDAFKAADT-TK-SGTVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 372 ~~~~~f~~~D~-~~-~G~is~~ef~~~l~~---~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
.+-++|+.||. +| +|+|+.+||+++++. +|.++++++++++++.+|.|++|+|+|+||+.+|.+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 45678999987 77 899999999999963 688899999999999999999999999999988754
No 54
>KOG1259|consensus
Probab=99.02 E-value=5.2e-11 Score=105.25 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=72.2
Q ss_pred cCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCccccccccccccc
Q psy2947 101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHAR 180 (441)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~ 180 (441)
.....|++||||+|.|+ .+..++.-++.++.|++|+|.|..+.. +..+++|+.|+|++|.+.....+.. .
T Consensus 281 dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~-------K 350 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHL-------K 350 (490)
T ss_pred chHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHh-------h
Confidence 34566788888888887 777788778888888888888877754 6778888888888888655443221 1
Q ss_pred ccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947 181 IRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE 220 (441)
Q Consensus 181 l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~ 220 (441)
++ +...+ +..|.+..+. .+..|.+|..|++++|.+.
T Consensus 351 LG---NIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 351 LG---NIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hc---CEeeeehhhhhHhhhh-hhHhhhhheeccccccchh
Confidence 11 11222 4455554444 5777778888888888654
No 55
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.99 E-value=1.9e-09 Score=81.56 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=43.6
Q ss_pred HHHHHHHHhC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 372 EVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-W----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 372 ~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-~----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
.+..+|+.|| .|++| +|+.+||+.+++. . +...++++++.+++.+|.|+||.|+|+||+.+|.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 4556677777 67777 4777777777765 2 2234566777777777777777777777777664
No 56
>KOG0038|consensus
Probab=98.99 E-value=2.2e-09 Score=83.80 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=82.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHH----HH
Q psy2947 337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEV----DQ 411 (441)
Q Consensus 337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~----~~ 411 (441)
+.+...|..||.|.+++++|..++.........+-.+.-+|+.+|-|+|+.|..+++...+..+- ..++++++ +.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 34556678899999999999999888754444344566689999999999999999999999864 45777774 57
Q ss_pred HHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 412 IFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 412 l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
++.++|.||||++++.||..++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 8899999999999999999988764
No 57
>PLN02964 phosphatidylserine decarboxylase
Probab=98.99 E-value=5.8e-09 Score=104.42 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=88.0
Q ss_pred eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcC-CCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947 259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLG-MSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV 337 (441)
Q Consensus 259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~-~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 337 (441)
.++..+++++++.|..+|.+|.- . .++.+++.++ ..++..+. ..+.
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG-~--iLg~ilrslG~~~pte~e~------------------------------~fi~ 182 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSN-K--VVGSIFVSCSIEDPVETER------------------------------SFAR 182 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCC-c--CHHHHHHHhCCCCCCHHHH------------------------------HHHH
Confidence 44566778888889888887543 1 2667777666 23322210 1267
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-------------hCCCC
Q psy2947 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-------------WGEGL 404 (441)
Q Consensus 338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-------------~~~~l 404 (441)
.+|+.+|.|++|.|+++||..++..+ .....+++++.+|+.+|.|++|.|+.+||+++|.. +|.++
T Consensus 183 ~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l 261 (644)
T PLN02964 183 RILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEAL 261 (644)
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcc
Confidence 77888999999999999999988865 34455778999999999999999999999999887 56556
Q ss_pred CH-HHHHHHH
Q psy2947 405 SS-KEVDQIF 413 (441)
Q Consensus 405 ~~-~~~~~l~ 413 (441)
+. +++..|+
T Consensus 262 ~~~~~~~~ii 271 (644)
T PLN02964 262 GVSDKLNAMI 271 (644)
T ss_pred cchhhHHHHH
Confidence 55 5555555
No 58
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.96 E-value=2.6e-09 Score=81.20 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 371 KEVVDAFKAADT-TK-SGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 371 ~~~~~~f~~~D~-~~-~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
..++.+|+.||. |+ +|.|+.+|++.+++. +|...++++++.+++.+|.+++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 456677888876 76 588888888887765 35566777788888888888888888888877664
No 59
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.95 E-value=3.4e-09 Score=80.24 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=52.5
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-hCC----CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-WGE----GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-~~~----~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
+.++++|+.|| .+++| .|+.+||+.+|+. +|. ..++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56778899996 88899 4999999999875 443 357788889999999888999999999887753
No 60
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.95 E-value=2.5e-09 Score=72.22 Aligned_cols=52 Identities=25% Similarity=0.520 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 384 KSGTVPAKYLKHVLVNWGEG-LSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 384 ~~G~is~~ef~~~l~~~~~~-l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
++|.|+.+||+.+|..+|.. ++++++..+|..+|.|++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999998864
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=1.9e-09 Score=110.61 Aligned_cols=82 Identities=27% Similarity=0.412 Sum_probs=72.7
Q ss_pred CCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCC-ccchhhcCCCCCCEEEc
Q psy2947 82 TVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMPQLDTVYR 159 (441)
Q Consensus 82 ~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l 159 (441)
.++.|+|++|.++ .+|..++.+++|+.|+|++|.+. |.+|..++.+++|+.|+|++|++. .+|..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3778899999988 78888999999999999999998 889988999999999999999994 78888999999999999
Q ss_pred cCCcC
Q psy2947 160 HGNHN 164 (441)
Q Consensus 160 ~~N~~ 164 (441)
++|.+
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 99983
No 62
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.94 E-value=4.2e-09 Score=78.23 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHhhccCCCCh-HHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKAADT-TKSGKLSFPDFLKVMHTHSKAEDIP-KEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~~D~-d~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
..+..+|+.||. +++|+|+..||+.++.......... ++++.+|+.+|.|+||.|+++||..++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568899999999 9999999999999998833443445 789999999999999999999999999764
No 63
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.91 E-value=6.6e-09 Score=77.47 Aligned_cols=65 Identities=6% Similarity=0.259 Sum_probs=50.8
Q ss_pred HHHHHHHHH-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 371 KEVVDAFKA-ADTTKSG-TVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 371 ~~~~~~f~~-~D~~~~G-~is~~ef~~~l~~~-----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
..+..+|+. +|.+++| +|+.+||+.++... +....+.+++.+++.+|.|+||.|+|+||+.+|..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 356677888 6777876 88888888888774 33456788888888888888889999998887753
No 64
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.91 E-value=7.6e-09 Score=113.78 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCcccEEeccCCC---cCcccCCCCCCCEEEccCCC-CCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947 60 FSHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135 (441)
Q Consensus 60 l~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 135 (441)
+.+|+.|++++|. +|..+..+++|+.|+|+++. ++.+| .++.+++|+.|++++|... ..+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCCEEe
Confidence 4677778887773 45566677888888887654 55666 4677788888888876544 47787788888888888
Q ss_pred ccCC-CCCccchhhcCCCCCCEEEccCCc
Q psy2947 136 LDNN-LLDALPGFLLSMPQLDTVYRHGNH 163 (441)
Q Consensus 136 l~~n-~l~~lp~~~~~l~~L~~L~l~~N~ 163 (441)
+++| .++.+|..+ ++++|+.|++++|.
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 8775 567777544 56677777777664
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=5.6e-10 Score=109.08 Aligned_cols=147 Identities=22% Similarity=0.261 Sum_probs=78.5
Q ss_pred CcccEEeccCC---CcCcccCCCC-CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 61 SHAFLLSLSYT---PIGRRIFKCD-TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 61 ~~L~~l~l~~n---~i~~~~~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
+.++.|++.+| .||.....++ +|+.|+++.|++..+|..+..+++|+.|++++|+++ .+|...+.++.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhheec
Confidence 44555666555 4445455553 666666666666666655666666666666666665 56655545666666666
Q ss_pred cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947 137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK 215 (441)
Q Consensus 137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~ 215 (441)
++|++..+|........|+.|.+++|++ ..++..+..+..+..+ +..|++..++..+..++.++.++++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~----------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSI----------IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcc----------eecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 6666666665444444566666666631 1122223333332222 3444444444444555555555555
Q ss_pred cccC
Q psy2947 216 ENFF 219 (441)
Q Consensus 216 ~n~~ 219 (441)
+|..
T Consensus 264 ~n~i 267 (394)
T COG4886 264 NNQI 267 (394)
T ss_pred cccc
Confidence 5543
No 66
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.89 E-value=7e-09 Score=73.58 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=47.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 374 ~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
+.+|+.+|++++|.|+.+|++.+++..| +++++++.+++.+|.+++|.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4578888888888888888888888776 4777888888888888888888888887664
No 67
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.89 E-value=6.2e-09 Score=114.50 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCC-CCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccc
Q psy2947 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN-LLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRS 183 (441)
Q Consensus 105 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~ 183 (441)
+|+.|++++|... +.+|.+++++++|+.|++++| .++.+|..+ .+++|+.|++++|... ..+|....
T Consensus 779 sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L---------~~~p~~~~- 846 (1153)
T PLN03210 779 SLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL---------RTFPDIST- 846 (1153)
T ss_pred cchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc---------cccccccc-
Confidence 4556666666544 456666677777777777665 456666544 4666777777665421 11222111
Q ss_pred cchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchhh
Q psy2947 184 TSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLV 229 (441)
Q Consensus 184 l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~ 229 (441)
.+..+ +.++.+..+|..+..+++|+.|+++++... ..+|..+.
T Consensus 847 --nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L-~~l~~~~~ 890 (1153)
T PLN03210 847 --NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL-QRVSLNIS 890 (1153)
T ss_pred --ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc-CccCcccc
Confidence 22223 566777788888888888888888764322 22555443
No 68
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.86 E-value=1.1e-08 Score=78.11 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
..++.+|+.+|.+++|.|+.+|++.+++..| +++++++.+++.+|.+++|.|+|+||+.++
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 4566778888888888888888888887765 677778888888888888888888888766
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=7.1e-10 Score=108.35 Aligned_cols=146 Identities=23% Similarity=0.214 Sum_probs=127.7
Q ss_pred cccEEeccCCCcC---cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccC
Q psy2947 62 HAFLLSLSYTPIG---RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138 (441)
Q Consensus 62 ~L~~l~l~~n~i~---~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 138 (441)
+|+.|+++.|.+. ..+..+++|+.|++++|+++.+|...+.++.|+.|++++|+++ .+|..+..+..|+.+.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS--DLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc--cCchhhhhhhhhhhhhhcC
Confidence 8999999999554 5789999999999999999999998888999999999999998 9998777778899999999
Q ss_pred CCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccc
Q psy2947 139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKEN 217 (441)
Q Consensus 139 n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n 217 (441)
|.+..++..+..+.++..|.+.+|++.. ++..+..++.+..+ +.+|.+..++. +..+..++.+++++|
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~----------~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLED----------LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred CcceecchhhhhcccccccccCCceeee----------ccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 9888888888899999999999999633 25667777777777 88899988886 999999999999998
Q ss_pred cCC
Q psy2947 218 FFE 220 (441)
Q Consensus 218 ~~~ 220 (441)
.+.
T Consensus 288 ~~~ 290 (394)
T COG4886 288 SLS 290 (394)
T ss_pred ccc
Confidence 765
No 70
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.6e-09 Score=75.22 Aligned_cols=57 Identities=44% Similarity=0.590 Sum_probs=30.6
Q ss_pred CCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCC
Q psy2947 82 TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNL 140 (441)
Q Consensus 82 ~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~ 140 (441)
+|++|++++|+++.+|+. |..+++|++|++++|.++ .+|+ .+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCCc
Confidence 455566666655555543 555555555555555555 3332 34555555555555554
No 71
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.82 E-value=2.5e-08 Score=69.26 Aligned_cols=61 Identities=34% Similarity=0.632 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
+..+|..+|.+++|.|+.+||..+++..+.+.+.+.+..+++.+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999888999999999999999999999999998865
No 72
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.81 E-value=1.5e-08 Score=76.14 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 371 KEVVDAFKAADT--TKSGTVPAKYLKHVLVN-WGEG----LSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 371 ~~~~~~f~~~D~--~~~G~is~~ef~~~l~~-~~~~----l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
+.++.+|..+|+ +++|.|+.+||+.+++. +|.. .++++++.+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 456677888888 78888888888888875 4433 34788888888888888888888888887754
No 73
>KOG2643|consensus
Probab=98.80 E-value=1.6e-08 Score=93.45 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=127.2
Q ss_pred HHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC--CCCHHHHHHHHHhh
Q psy2947 266 LEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAA 343 (441)
Q Consensus 266 ~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~ 343 (441)
..+..-|...|.++.+ +.+++.+++..+..+.-..|+.+......|.|+-.+|..++-.+... +....-++.+=+.+
T Consensus 288 saL~~yFFG~rg~~kL-s~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf 366 (489)
T KOG2643|consen 288 SALLTYFFGKRGNGKL-SIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKF 366 (489)
T ss_pred hhHHHHhhccCCCccc-cHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhc
Confidence 3466666666667788 89999999999887777888888887777999999999998877643 22233566777777
Q ss_pred cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCC
Q psy2947 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNS 422 (441)
Q Consensus 344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d~dg 422 (441)
+.+ +..|++.||+++.+.+..- ..+..+...|- ...+.|+..+|+++... .|..+++..++-+|.-+|.|+||
T Consensus 367 ~~~-~~gISl~Ef~~Ff~Fl~~l----~dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg 440 (489)
T KOG2643|consen 367 KDD-GKGISLQEFKAFFRFLNNL----NDFDIALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDG 440 (489)
T ss_pred cCC-CCCcCHHHHHHHHHHHhhh----hHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCC
Confidence 776 5669999999988776321 23444433332 34688999999999887 57889999999999999999999
Q ss_pred ceeHHHHHHHHhccC
Q psy2947 423 KVRYEDFVKIACAPV 437 (441)
Q Consensus 423 ~i~~~ef~~~l~~~~ 437 (441)
.++++||+..|.+.+
T Consensus 441 ~LS~~EFl~Vmk~Rm 455 (489)
T KOG2643|consen 441 TLSHKEFLAVMKRRM 455 (489)
T ss_pred cccHHHHHHHHHHHh
Confidence 999999999996553
No 74
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.80 E-value=2.9e-08 Score=75.04 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947 334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401 (441)
Q Consensus 334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~ 401 (441)
..++++|+.|| .|++| +|+..|++.++.... ........++.+++.+|.|++|.|+++||..++..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 45788899999 78998 599999999997632 2233567899999999999999999999999998753
No 75
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.79 E-value=3.5e-08 Score=73.46 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=58.3
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh----hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~----~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
..++++|+.|| .|++| .|+.+|++.++.. ..+....+++++.+++.+|.|++|.|+++||..++..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46889999998 79999 5999999999998 33455567789999999999999999999999988764
No 76
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.3e-09 Score=72.59 Aligned_cols=59 Identities=32% Similarity=0.410 Sum_probs=53.8
Q ss_pred CCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcC
Q psy2947 104 TNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~ 164 (441)
++|++|++++|+++ .+|. .+..+++|++|++++|.++.+| ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999998 7875 6699999999999999999997 6889999999999999984
No 77
>KOG4251|consensus
Probab=98.74 E-value=6.1e-08 Score=82.69 Aligned_cols=167 Identities=14% Similarity=0.186 Sum_probs=104.6
Q ss_pred chHHHHHhhhcccc--CCCccCHHHHHHHHHHc-C------CCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCC---
Q psy2947 264 PYLEFRECFFLFAR--NGTIKTLDELSVIMRSL-G------MSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAED--- 331 (441)
Q Consensus 264 ~~~~l~~~f~~~d~--~G~i~~~~el~~~~~~~-~------~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~--- 331 (441)
..+.+..+|+..|. ||.| +..|+++.+..- . ...+...+..++.++||+|+++||..-+....+...
T Consensus 99 srrklmviFsKvDVNtDrki-sAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKI-SAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccc-cHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 45677788888885 4888 778886665432 1 111222233344578899999998765442221100
Q ss_pred --------------------------------------------------------CHHHHHHHHHhhcCCCCCcccHHH
Q psy2947 332 --------------------------------------------------------IPKEVVDAFKAADTTKSGKLSFPD 355 (441)
Q Consensus 332 --------------------------------------------------------~~~~~~~~f~~~D~d~~g~i~~~e 355 (441)
-..-++++.+.+|+||+..++..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 011156667778888888888888
Q ss_pred HHHHHHh----hccCCCCh----HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHH
Q psy2947 356 FLKVMHT----HSKAEDIP----KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427 (441)
Q Consensus 356 f~~~~~~----~~~~~~~~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ 427 (441)
|...... ++.+.... ...++.=..+|.+.||.+|++|+..++......+.-.++..++...|.+++.+++.+
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~e 337 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLE 337 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHH
Confidence 8764322 21111111 122233345688888888888888887666666667777788888888888888888
Q ss_pred HHHH
Q psy2947 428 DFVK 431 (441)
Q Consensus 428 ef~~ 431 (441)
|..+
T Consensus 338 ell~ 341 (362)
T KOG4251|consen 338 ELLE 341 (362)
T ss_pred HHHH
Confidence 8765
No 78
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.71 E-value=9e-08 Score=71.27 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHhh--ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKAADT-TK-SGKLSFPDFLKVMHTH--SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~~D~-d~-~g~i~~~ef~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
..+..+|+.||. |+ +|+|+.+||+.++... .+.....+++.++|+.+|.|++|.|+++||..++..+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457889999998 77 8999999999999742 3455678899999999999999999999999998765
No 79
>PF14658 EF-hand_9: EF-hand domain
Probab=98.68 E-value=8.1e-08 Score=65.56 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=57.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CceeHHHHHHHHhccC
Q psy2947 375 DAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMN-SKVRYEDFVKIACAPV 437 (441)
Q Consensus 375 ~~f~~~D~~~~G~is~~ef~~~l~~~~~-~l~~~~~~~l~~~~d~d~d-g~i~~~ef~~~l~~~~ 437 (441)
.+|+.||+++.|.|...+++.+|++++. ..++.+++.+...+|.++. |.|+++.|...|...+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 4799999999999999999999999987 7889999999999999887 9999999999998653
No 80
>KOG0377|consensus
Probab=98.67 E-value=3.8e-07 Score=84.44 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHH-HhhcCCCCCcccHHHHHHHHHhhcc----CCCC-------
Q psy2947 302 ELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMHTHSK----AEDI------- 369 (441)
Q Consensus 302 ~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f-~~~D~d~~g~i~~~ef~~~~~~~~~----~~~~------- 369 (441)
++..++.++.|.|+...+...+....+-..+ |+.+- +....+.+|.+.+.+..+.+..... +...
T Consensus 469 eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP---Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ 545 (631)
T KOG0377|consen 469 EFRKYDPKKSGKLSISHWAKCMENITGLNLP---WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRN 545 (631)
T ss_pred HHHhcChhhcCeeeHHHHHHHHHHHhcCCCc---HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhc
Confidence 4444555667777777777766655443221 22211 1223344556665555443322110 0000
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
...++.+|...|+|++|.|+.+||+++++-+ ..+++++++.++-+.+|-++||.|++.||+++.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 1256789999999999999999999999753 467899999999999999999999999999876
No 81
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=8.1e-09 Score=97.82 Aligned_cols=104 Identities=25% Similarity=0.228 Sum_probs=53.2
Q ss_pred CCcccEEeccCCCcC----cccCCC---CCCCEEEccCCCCC-----cCCcCccCC-CCCcEEEccCCcCCCCC----Cc
Q psy2947 60 FSHAFLLSLSYTPIG----RRIFKC---DTVEVLSLKSNSLT-----SLPPDIGRL-TNLRVLCLTDNCLQNAS----IP 122 (441)
Q Consensus 60 l~~L~~l~l~~n~i~----~~~~~l---~~L~~L~l~~n~l~-----~lp~~~~~l-~~L~~L~l~~n~l~~~~----~p 122 (441)
+++|+.|++++|.+. ..+..+ ++|+.|++++|+++ .+...+..+ ++|+.|++++|.++ +. ++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE-GASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC-chHHHHHH
Confidence 446666666666432 122222 23666666666655 122234444 56666666666655 21 12
Q ss_pred hhhhcCCCCCEEEccCCCCC-----ccchhhcCCCCCCEEEccCCcC
Q psy2947 123 FTLTFCKNLTHLYLDNNLLD-----ALPGFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 123 ~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~N~~ 164 (441)
..+..+++|++|++++|.++ .++..+..+++|+.|++++|.+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 23344455666666666664 2233344445666666666654
No 82
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.65 E-value=1.1e-07 Score=74.26 Aligned_cols=60 Identities=10% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
..+..+|..+|.|+||.|+.+|+..++ ++ ..+..+..+|..+|.|+||.||++||..++.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 456677888888888888888887765 22 3356667788888888888888888877773
No 83
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=7.7e-08 Score=73.13 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947 333 PKEVVDAFKAADT-TK-SGKLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401 (441)
Q Consensus 333 ~~~~~~~f~~~D~-d~-~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~ 401 (441)
...++.+|+.||. |+ +|.|+.+|++.++.... ......+.++.+|+.+|.+++|.|+++||.+++...+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3568899999997 97 79999999999987521 2344567899999999999999999999999998754
No 84
>KOG4579|consensus
Probab=98.64 E-value=4.2e-09 Score=82.67 Aligned_cols=101 Identities=24% Similarity=0.280 Sum_probs=65.2
Q ss_pred cccEEeccCCC---cCcc---cCCCCCCCEEEccCCCCCcCCcCccCC-CCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947 62 HAFLLSLSYTP---IGRR---IFKCDTVEVLSLKSNSLTSLPPDIGRL-TNLRVLCLTDNCLQNASIPFTLTFCKNLTHL 134 (441)
Q Consensus 62 ~L~~l~l~~n~---i~~~---~~~l~~L~~L~l~~n~l~~lp~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 134 (441)
.+..++|++++ |+.. +....+|+..+|++|.+..+|+.|... +.++.|++++|.|+ .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhc
Confidence 34556666663 3322 334456666677777777777665443 46677777777776 677777777777777
Q ss_pred EccCCCCCccchhhcCCCCCCEEEccCCcC
Q psy2947 135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~ 164 (441)
+++.|.|...|..+..+.+|..|+..+|.+
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 777777777776666666666666666663
No 85
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.63 E-value=1.1e-07 Score=71.08 Aligned_cols=65 Identities=17% Similarity=0.380 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 372 EVVDAFKAADTT--KSGTVPAKYLKHVLV-NWGEGLS----SKEVDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 372 ~~~~~f~~~D~~--~~G~is~~ef~~~l~-~~~~~l~----~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.+..+|+.++.. ++|.|+.+||+.+|. .++..++ +++++.+|+.+|.+++|.|+|+||+.++...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456678888755 478999999999996 4555566 8889999999999999999999999887643
No 86
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.62 E-value=2.3e-07 Score=70.25 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-hc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 333 PKEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT-HS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 333 ~~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~-~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
.+.++++|+.|| .+++| .|+..|++.++.. +. ......+.++.+|+.+|.+++|.|+++||..++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 367899999997 99999 5999999999975 31 122356789999999999999999999999998764
No 87
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.59 E-value=2e-07 Score=65.96 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
+++|+.+|.|++|.|+.+|+..++.... ...+.++.+|+.+|.+++|.|+++||..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999987752 256789999999999999999999999998653
No 88
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.59 E-value=3.1e-07 Score=68.50 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=56.3
Q ss_pred HHHHHHHHh-hcCCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKA-ADTTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~-~D~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
..+..+|+. +|.+++| +|+.+||+.++.... ........+..+++.+|.|+||.|+++||.+++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567888999 7788876 999999999998753 233345789999999999999999999999998765
No 89
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.57 E-value=2.6e-07 Score=72.28 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
...+..+|..+|.|+||.|+.+|+..+. + ...+..+..+|+.+|.|+||.||++||...+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4678999999999999999999999876 2 12256778899999999999999999999983
No 90
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=1.2e-08 Score=96.56 Aligned_cols=105 Identities=25% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCcccEEeccCCCcC----------cccCCCCCCCEEEccCCCCC-cCCcCccCCCC---CcEEEccCCcCCCC---CCc
Q psy2947 60 FSHAFLLSLSYTPIG----------RRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTN---LRVLCLTDNCLQNA---SIP 122 (441)
Q Consensus 60 l~~L~~l~l~~n~i~----------~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~---L~~L~l~~n~l~~~---~~p 122 (441)
.++|+.++++++.+. ..+..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+... .+.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 445666666666443 23445667777777777665 33333433433 77777777766410 112
Q ss_pred hhhhcC-CCCCEEEccCCCCC-----ccchhhcCCCCCCEEEccCCcC
Q psy2947 123 FTLTFC-KNLTHLYLDNNLLD-----ALPGFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 123 ~~~~~l-~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~N~~ 164 (441)
..+..+ ++|+.|++++|.++ .++..+..+++|+.|++++|.+
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 233444 66777777777765 2334455566677777777664
No 91
>KOG0031|consensus
Probab=98.57 E-value=1.4e-06 Score=69.29 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQ 411 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-~~~~l~~~~~~~ 411 (441)
.++++++|..+|+|+||.|++++++.++..+... ..++++.+|++.. .|-|++.-|-.++-. +...-+++.+-.
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4678999999999999999999999999888444 6688999999654 789999998888865 333345788999
Q ss_pred HHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 412 IFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 412 l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.|+.+|.++.|.|..+.+.++|...
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHHh
Confidence 9999999999999999998888653
No 92
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.56 E-value=2.9e-07 Score=69.07 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcC--CCCCcccHHHHHHHHHhhccC----CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKAADT--TKSGKLSFPDFLKVMHTHSKA----EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~~D~--d~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
+.++.+|+.||. +++|.|+.+||..++...... ....+.++.+|..+|.+++|.|+++||..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 568889999999 899999999999998753222 1236789999999999999999999999998764
No 93
>KOG3207|consensus
Probab=98.55 E-value=1.1e-08 Score=95.14 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=91.4
Q ss_pred CCCCcccEEeccCCCcC------cccCCCCCCCEEEccCCCCCcCCcC--ccCCCCCcEEEccCCcCCCCCCchhhhcCC
Q psy2947 58 QYFSHAFLLSLSYTPIG------RRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCK 129 (441)
Q Consensus 58 ~~l~~L~~l~l~~n~i~------~~~~~l~~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 129 (441)
+.+++++.||||.|-+. .....+++|+.|+|+.|++...-.+ -..+++|+.|.|+.|.+++..+-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34677788888877332 3344677888888888877622221 224677788888888776333333446677
Q ss_pred CCCEEEccCCC-CCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc--CCch---
Q psy2947 130 NLTHLYLDNNL-LDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH--QPSR--- 202 (441)
Q Consensus 130 ~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~--~p~~--- 202 (441)
+|..|+|..|. +..--....-+..|+.|+|++|++.....+ ..+..++.+..+ +..+.+.. .|+.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~--------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG--------YKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc--------cccccccchhhhhccccCcchhcCCCccch
Confidence 88888888774 221112223456778888888886444321 234444555555 44444322 3332
Q ss_pred --hhhhhhhcccccccccCC
Q psy2947 203 --LQDLAVQSVIASKENFFE 220 (441)
Q Consensus 203 --l~~l~~l~~l~l~~n~~~ 220 (441)
...++.|+.|+++.|+..
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhcccccceeeecccCccc
Confidence 456677888888877653
No 94
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.55 E-value=4.5e-07 Score=69.22 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
..++.+|+.+|.|++|.|+.+|+..++... ....++++.+|..+|.+++|.|+++||..++..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 568889999999999999999999999874 244678999999999999999999999999875
No 95
>KOG0030|consensus
Probab=98.54 E-value=1.1e-06 Score=68.71 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhC---CCCC
Q psy2947 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWG---EGLS 405 (441)
Q Consensus 331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~G~is~~ef~~~l~~~~---~~l~ 405 (441)
...++++++|..||..+||.|+..+.-..++.+ +..++..++......++++ +--.|++|+|.-++..++ ...+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 445889999999999999999999999999887 5667778888888888777 457999999999988764 4567
Q ss_pred HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 406 SKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 406 ~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
.++.-+-++.+|++++|.|.+.|+.+.+..
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 788889999999999999999999888753
No 96
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.50 E-value=4.2e-07 Score=61.21 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHHHhhccCC-CChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 348 SGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 348 ~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
+|.|+.++|+.++... +.. ..++++..+|..+|.+++|.|+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4667777777766433 333 55666777777777777777777777777653
No 97
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.45 E-value=1e-06 Score=60.97 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 397 (441)
Q Consensus 336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l 397 (441)
+..+|+.+|.+++|.|+++||..++... ......+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999876 344556788899999999999999999998765
No 98
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.44 E-value=3e-07 Score=52.48 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
++.+|+.+|+|+||+|+++||+.+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 445555555555555555555555543
No 99
>KOG2643|consensus
Probab=98.39 E-value=9.6e-07 Score=82.02 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=63.4
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC--------------CCChHHHHH
Q psy2947 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA--------------EDIPKEVVD 375 (441)
Q Consensus 310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~--------------~~~~~~~~~ 375 (441)
.+|.|+|.|+.-++.-...+ +...+-+|++||.||||.|+.+||..+.+....+ ......+..
T Consensus 212 ~~GLIsfSdYiFLlTlLS~p---~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns 288 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLSIP---ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS 288 (489)
T ss_pred CCCeeeHHHHHHHHHHHccC---cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence 56777777776666544332 3345566777777777777777776654321100 000011111
Q ss_pred H--HHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 376 A--FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 376 ~--f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
. -.-|..+++|+++.+||.+++..+ ..+-.+--|.++|....|.|+-.+|...|
T Consensus 289 aL~~yFFG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~l 344 (489)
T KOG2643|consen 289 ALLTYFFGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELL 344 (489)
T ss_pred hHHHHhhccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHH
Confidence 1 223466666666666666666653 23334445556665555666666666555
No 100
>KOG0041|consensus
Probab=98.38 E-value=1.3e-06 Score=72.45 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW--GEGLSSKEVD 410 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~--~~~l~~~~~~ 410 (441)
...+..+|+.||.+.||+|++.|++.+|..+ +...+.--++.+++..|.|.||.||+.||--+++.. |+--.+....
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~ 176 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLL 176 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHH
Confidence 4566777888888888888888888888776 444445567888888888888888888888887763 3322333344
Q ss_pred HHHHH--hCCCCCCceeHHHHHHH
Q psy2947 411 QIFRE--ANVTMNSKVRYEDFVKI 432 (441)
Q Consensus 411 ~l~~~--~d~d~dg~i~~~ef~~~ 432 (441)
.+-+. .|-...|..--..|-++
T Consensus 177 ~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 177 RLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred HHHHhcccchhhhhhhhHHHHHHH
Confidence 44433 55555565555555553
No 101
>KOG4666|consensus
Probab=98.36 E-value=3.6e-07 Score=81.38 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=99.8
Q ss_pred hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388 (441)
Q Consensus 309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i 388 (441)
.+.+.|...||...++- +-.+.+..+|..||.+++|.+|+.|....+..+.+...+.+.++-+|+.|+.+.||++
T Consensus 239 ~kg~~igi~efa~~l~v-----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLRV-----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred ccCCCcceeEeeeeeec-----chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccccccccc
Confidence 46677777777665541 2236788999999999999999999999888887777778899999999999999999
Q ss_pred cHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 389 PAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 389 s~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
+.++|.-+++. +| +.+-.+-.+|+..+...+|+|+|++|.+++..
T Consensus 314 ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 314 GEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred chHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 99999999986 34 44555667999999888999999999998753
No 102
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=4e-07 Score=57.97 Aligned_cols=39 Identities=33% Similarity=0.448 Sum_probs=19.1
Q ss_pred CCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc
Q psy2947 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145 (441)
Q Consensus 105 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp 145 (441)
+|++|++++|+|+ .+|..+++|++|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4455555555554 45544555555555555555555443
No 103
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=6.2e-07 Score=57.07 Aligned_cols=36 Identities=39% Similarity=0.691 Sum_probs=20.8
Q ss_pred CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCC
Q psy2947 82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQ 117 (441)
Q Consensus 82 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~ 117 (441)
+|++|++++|+|+.+|+.+++|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 456666666666666555666666666666666655
No 104
>KOG4579|consensus
Probab=98.34 E-value=3.4e-08 Score=77.62 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=72.8
Q ss_pred CCCEEEccCCCCCcCCcC---ccCCCCCcEEEccCCcCCCCCCchhhh-cCCCCCEEEccCCCCCccchhhcCCCCCCEE
Q psy2947 82 TVEVLSLKSNSLTSLPPD---IGRLTNLRVLCLTDNCLQNASIPFTLT-FCKNLTHLYLDNNLLDALPGFLLSMPQLDTV 157 (441)
Q Consensus 82 ~L~~L~l~~n~l~~lp~~---~~~l~~L~~L~l~~n~l~~~~~p~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 157 (441)
.+..++|+++++..+++. +.....|...+|++|.+. .+|..+. ..+.++.|+|++|.|+.+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 345566667666655544 445556666677777776 6666663 3346677777777777777667777777777
Q ss_pred EccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947 158 YRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE 220 (441)
Q Consensus 158 ~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~ 220 (441)
+++.|++.. .|.-+..|..+..+ ..+|....+|-.+..-......++.++++.
T Consensus 106 Nl~~N~l~~----------~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 106 NLRFNPLNA----------EPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred ccccCcccc----------chHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence 777777522 23344444444444 444555555544433333333444545544
No 105
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.32 E-value=2.5e-06 Score=63.69 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHHhhccCCCC----hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKAADTT--KSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~~D~d--~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
..+..+|+.|+.. .+|.|+.+||+.++......... .+.+..+|+.+|.+++|.|+++||..++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999866 47999999999999744333233 6789999999999999999999999998764
No 106
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.31 E-value=8.7e-07 Score=50.57 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHT 362 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~ 362 (441)
+++++|+.||.|+||+|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4788999999999999999999998875
No 107
>KOG3207|consensus
Probab=98.31 E-value=1e-07 Score=88.90 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCCcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCCcC---CcCccCCCCCcEEEccCCcCCCCCCchh-hhcCC
Q psy2947 59 YFSHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLTSL---PPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCK 129 (441)
Q Consensus 59 ~l~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~ 129 (441)
.+..|+.+.|.+..+. .....|++++.|+||.|-++.+ -.-...|++|+.|+++.|++. -...+. -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhh
Confidence 5778888888887432 2456789999999999988833 223667899999999999987 222222 25678
Q ss_pred CCCEEEccCCCCC--ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC--chhh
Q psy2947 130 NLTHLYLDNNLLD--ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP--SRLQ 204 (441)
Q Consensus 130 ~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p--~~l~ 204 (441)
+|+.|.|+.|+|+ .+-..+..+|+|+.|+|..|....... .....++.++.+ +.+|.+...+ ...+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~---------~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA---------TSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec---------chhhhhhHHhhccccCCcccccccccccc
Confidence 8999999999996 444556678999999999995222111 122234455556 7777776666 5778
Q ss_pred hhhhhcccccccccCCCCCCCch
Q psy2947 205 DLAVQSVIASKENFFEPGLFPGP 227 (441)
Q Consensus 205 ~l~~l~~l~l~~n~~~~~~~p~~ 227 (441)
.|+.|..|+++.+.+..-.+|..
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred cccchhhhhccccCcchhcCCCc
Confidence 88899999888876665444443
No 108
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.30 E-value=4.7e-06 Score=61.41 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
+..+|+.|- .+.+.++..||+.++.. ++..-..+.++.+++.+|.|+||.|+|.||+..+
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 344555554 33446666666666643 1223345556666666666666666666666654
No 109
>KOG1859|consensus
Probab=98.30 E-value=2.3e-08 Score=98.52 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=36.3
Q ss_pred ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchh-hhcCCCCCEEEccCCCCCccchhhcCCCCC
Q psy2947 76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDALPGFLLSMPQL 154 (441)
Q Consensus 76 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L 154 (441)
++.-++.|+.|+|++|+++.+. .+..+++|++|||++|.++ .+|.- ..++. |..|.+++|-++.+- .+.++.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR--HVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc--cccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 3333444455555555544332 3444445555555555544 44431 11222 444444444444442 23344444
Q ss_pred CEEEccCCc
Q psy2947 155 DTVYRHGNH 163 (441)
Q Consensus 155 ~~L~l~~N~ 163 (441)
+.|++++|-
T Consensus 257 ~~LDlsyNl 265 (1096)
T KOG1859|consen 257 YGLDLSYNL 265 (1096)
T ss_pred hccchhHhh
Confidence 444444444
No 110
>KOG0531|consensus
Probab=98.29 E-value=3.3e-07 Score=89.98 Aligned_cols=104 Identities=25% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCcccEEeccCCCcC---cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 60 FSHAFLLSLSYTPIG---RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 60 l~~L~~l~l~~n~i~---~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
+++|..|++..|.|. ..+..+++|++|++++|.|+.+. ++..++.|+.|++++|.|+ .++ .+..+.+|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~--~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS--DIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcch--hcc-CCccchhhhcccC
Confidence 556666666666443 21445666666666666666543 3445555666666666665 333 3444666666666
Q ss_pred cCCCCCccchh-hcCCCCCCEEEccCCcCccC
Q psy2947 137 DNNLLDALPGF-LLSMPQLDTVYRHGNHNYFK 167 (441)
Q Consensus 137 ~~n~l~~lp~~-~~~l~~L~~L~l~~N~~~~~ 167 (441)
++|.+..+... ...+.+|+.+++.+|.+...
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 66666655542 34556666666666665443
No 111
>KOG1859|consensus
Probab=98.27 E-value=5e-08 Score=96.26 Aligned_cols=125 Identities=19% Similarity=0.143 Sum_probs=97.5
Q ss_pred CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEcc
Q psy2947 82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRH 160 (441)
Q Consensus 82 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~ 160 (441)
.|...+.++|++..+..++.-++.|+.|+|++|+++ ... .+..++.|++|||++|.+..+|. ...++. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 467778888999988888888999999999999998 554 78899999999999999999983 233444 9999999
Q ss_pred CCcCccCcccccccccccccccccchhHHH-HhhcccccCC--chhhhhhhhcccccccccCCC
Q psy2947 161 GNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP--SRLQDLAVQSVIASKENFFEP 221 (441)
Q Consensus 161 ~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p--~~l~~l~~l~~l~l~~n~~~~ 221 (441)
+|-+... ..+.+|..+..+ +.+|.+.... .-|..|..|..|.+.+||+-+
T Consensus 241 nN~l~tL-----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 NNALTTL-----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccHHHhh-----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9996442 235555555555 6666653322 357888999999999999876
No 112
>KOG4251|consensus
Probab=98.25 E-value=1.2e-06 Score=74.96 Aligned_cols=131 Identities=13% Similarity=0.173 Sum_probs=89.4
Q ss_pred HhCCCcccHHHHHHHHHhhcCC--CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC-------------CCChHH
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA-------------EDIPKE 372 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~-------------~~~~~~ 372 (441)
.+.||+|+..|..+.+...... ..+.++-+.-|+..|+|++|.|+++||+.-+....+. ....++
T Consensus 112 VNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDe 191 (362)
T KOG4251|consen 112 VNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDE 191 (362)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccH
Confidence 5678999999998887755332 1223455667999999999999999998644332111 111122
Q ss_pred HHHHHHHhCCCCCCcccH---------HHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947 373 VVDAFKAADTTKSGTVPA---------KYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP 438 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~---------~ef~~~l~~~-~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~ 438 (441)
-..+|-.-++++.|..+. +||..++..- ...+-..-++.+++.+|+|+|.+++..||+.....++.
T Consensus 192 EtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVe 267 (362)
T KOG4251|consen 192 ETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVE 267 (362)
T ss_pred HHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchh
Confidence 334566666666666555 9998888642 11233455788999999999999999999987655543
No 113
>PF14658 EF-hand_9: EF-hand domain
Probab=98.20 E-value=7.1e-06 Score=56.13 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=56.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCC-CcccHHHHHHHHHH
Q psy2947 339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS-GTVPAKYLKHVLVN 399 (441)
Q Consensus 339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-G~is~~ef~~~l~~ 399 (441)
+|..+|.++.|.|...+++.+++........+.+++.+.+.+|+++. |.|+++.|..+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 68899999999999999999999986657778899999999999998 99999999999975
No 114
>KOG0531|consensus
Probab=98.17 E-value=7.5e-07 Score=87.44 Aligned_cols=105 Identities=25% Similarity=0.265 Sum_probs=86.5
Q ss_pred CCcccEEeccCCCcCc---ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947 60 FSHAFLLSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136 (441)
Q Consensus 60 l~~L~~l~l~~n~i~~---~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 136 (441)
+..++.+++..|.|.. .+..+++|+.|++..|+|..+...+..+.+|+.|++++|.|+ .+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~--~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT--KLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc--ccc-chhhccchhhhee
Confidence 5677777788886643 367889999999999999988766888999999999999998 554 4777888999999
Q ss_pred cCCCCCccchhhcCCCCCCEEEccCCcCccCc
Q psy2947 137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKS 168 (441)
Q Consensus 137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~ 168 (441)
++|.|..++. +..++.|+.+++++|++....
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSYNRIVDIE 178 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCcchhhhhh
Confidence 9999998864 445889999999999975544
No 115
>KOG0751|consensus
Probab=98.17 E-value=1.5e-05 Score=75.18 Aligned_cols=98 Identities=22% Similarity=0.315 Sum_probs=67.2
Q ss_pred ccchHHHHHhhhccc---cCC--CccCHHHH-HHHHHHcCCCcCHHHHHHHHH-----hCCCcccHHHHHHHHHhhcCCC
Q psy2947 262 KTPYLEFRECFFLFA---RNG--TIKTLDEL-SVIMRSLGMSPTIAELKKYLA-----EKGGKLSFPDFLKVMHTHSKAE 330 (441)
Q Consensus 262 ~~~~~~l~~~f~~~d---~~G--~i~~~~el-~~~~~~~~~~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~~~~~~~ 330 (441)
..+..+++..|..+. .+| ++ +.+++ +..+.-+.......+..++.. -+||.|+|+||+.+=...+
T Consensus 29 ra~~~eLr~if~~~as~e~~ge~~m-t~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--- 104 (694)
T KOG0751|consen 29 RADPKELRSIFLKYASIEKNGESYM-TPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC--- 104 (694)
T ss_pred cCChHHHHHHHHHHhHHhhcccccc-CHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---
Confidence 344556666665444 344 34 55665 444555555555555555543 4899999999998765443
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q psy2947 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH 363 (441)
Q Consensus 331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~ 363 (441)
........+|..||+.++|.++++++..++...
T Consensus 105 ~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 105 APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 346678889999999999999999999988654
No 116
>KOG0377|consensus
Probab=98.13 E-value=2.6e-05 Score=72.61 Aligned_cols=135 Identities=17% Similarity=0.272 Sum_probs=94.3
Q ss_pred hHHHHHhhhccccC--CCccCHHHHHHHHHHc-CCCcCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCC---------
Q psy2947 265 YLEFRECFFLFARN--GTIKTLDELSVIMRSL-GMSPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAE--------- 330 (441)
Q Consensus 265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~-~~~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~--------- 330 (441)
..++...|..+|.+ |.+ +...+...+..+ +....=..+..-+. ..+|.+.|.+-.+.+..-....
T Consensus 463 ~sdL~~eF~~~D~~ksG~l-sis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKL-SISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhHHHHHHHhcChhhcCee-eHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 35667788888875 999 788888887764 22222111221111 3567777776666554221110
Q ss_pred --CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 331 --DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 331 --~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
.-...+..+|+.+|.|++|.|+.+||+.++..+. ......+.+-++-+..|-++||.|+..||-.+++-+
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 0124578899999999999999999999887653 345556788888899999999999999999998754
No 117
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.11 E-value=1.2e-05 Score=76.74 Aligned_cols=90 Identities=12% Similarity=0.182 Sum_probs=63.2
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHH-HHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy2947 332 IPKEVVDAFKAADTTKSGKLSFPDFLK-VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD 410 (441)
Q Consensus 332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~ 410 (441)
..+++.+-.+.|..|. ..++++.. .+....+.......++.+|+.+|.++||.|+.+||.. ++
T Consensus 297 a~ekl~egi~~F~~d~---~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~ 360 (391)
T PRK12309 297 ASEKLDEGIKGFSKAL---ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SD 360 (391)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HH
Confidence 3455555555555432 22333332 2222334444567889999999999999999999942 56
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947 411 QIFREANVTMNSKVRYEDFVKIACAPV 437 (441)
Q Consensus 411 ~l~~~~d~d~dg~i~~~ef~~~l~~~~ 437 (441)
.+|+.+|.|+||.|+++||...+...+
T Consensus 361 ~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 361 AVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 899999999999999999999886543
No 118
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.07 E-value=5.7e-06 Score=48.34 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH-HhC
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLV-NWG 401 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~-~~~ 401 (441)
++.+|+.+|.|++|+|+.+||+++++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56778888888888888888888777 454
No 119
>KOG0041|consensus
Probab=98.04 E-value=6.7e-05 Score=62.53 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
.....+|+.+|.+.||+|+..|++.+|.++|.+=+---++.|+++.|.|.||+|+|.||.-..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 456678999999999999999999999999877666678889999999999999999887543
No 120
>KOG4658|consensus
Probab=97.98 E-value=4.6e-06 Score=88.10 Aligned_cols=100 Identities=30% Similarity=0.389 Sum_probs=66.9
Q ss_pred cccEEeccCCC-----cCcc-cCCCCCCCEEEccCCC-CCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947 62 HAFLLSLSYTP-----IGRR-IFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL 134 (441)
Q Consensus 62 ~L~~l~l~~n~-----i~~~-~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 134 (441)
.|+.|-+..|. ++.. +..++.|++|||++|. +..+|..++.|-+|++|++++..++ .+|.++.+|+.|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhee
Confidence 45566555552 3333 4457777777777664 5577777777777777777777776 777777777777777
Q ss_pred EccCCCC-CccchhhcCCCCCCEEEccCCc
Q psy2947 135 YLDNNLL-DALPGFLLSMPQLDTVYRHGNH 163 (441)
Q Consensus 135 ~l~~n~l-~~lp~~~~~l~~L~~L~l~~N~ 163 (441)
++..+.- ..+|.....+++|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 7776643 4445555567777777765443
No 121
>KOG4658|consensus
Probab=97.95 E-value=3e-06 Score=89.45 Aligned_cols=102 Identities=25% Similarity=0.221 Sum_probs=81.1
Q ss_pred CCCCCcccEEeccCC----CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947 57 PQYFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132 (441)
Q Consensus 57 ~~~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 132 (441)
+..++.|+.|||++| .+|..++.+-+|++|+|++..++.+|.++..|..|.+|++..+.-. ..+|.....|.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc-ccccchhhhccccc
Confidence 567899999999988 7999999999999999999999999999999999999999988755 35555557799999
Q ss_pred EEEccCCCC--Ccc-chhhcCCCCCCEEEc
Q psy2947 133 HLYLDNNLL--DAL-PGFLLSMPQLDTVYR 159 (441)
Q Consensus 133 ~L~l~~n~l--~~l-p~~~~~l~~L~~L~l 159 (441)
+|.+..... +.. -..+..+.+|+.+..
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhhee
Confidence 999876542 111 133445555555544
No 122
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=1.9e-05 Score=75.26 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=37.7
Q ss_pred CCcccEEeccCCCcCcccCCCCCCCEEEccC-CCCCcCCcCccCCCCCcEEEccCC-cCCCCCCchhhhcCCCCCEEEcc
Q psy2947 60 FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKS-NSLTSLPPDIGRLTNLRVLCLTDN-CLQNASIPFTLTFCKNLTHLYLD 137 (441)
Q Consensus 60 l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~-n~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~ 137 (441)
+.+++.|++++|.+..-..-..+|+.|.+++ +.++.+|..+ ..+|+.|++++| .+. .+|. +|+.|+++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--GLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--cccc------ccceEEeC
Confidence 3556667777663321111123577777765 4455666544 246777777766 444 5553 24445555
Q ss_pred CCC
Q psy2947 138 NNL 140 (441)
Q Consensus 138 ~n~ 140 (441)
.|.
T Consensus 121 ~n~ 123 (426)
T PRK15386 121 GSA 123 (426)
T ss_pred CCC
Confidence 544
No 123
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.92 E-value=3.6e-05 Score=73.51 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 329 AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 329 ~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
.......+..+|+.+|.|++|.|+.+||.. .+.+|+.+|.|+||.|+++||++.+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 345567889999999999999999999942 467999999999999999999999875
No 124
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.89 E-value=0.00011 Score=54.26 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
..+..+|+.|..+ .++++..||+.++... .........++.+++..|.|+||.|+++||..++..+
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999844 5689999999988643 2445556789999999999999999999999998765
No 125
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.86 E-value=1.9e-05 Score=43.35 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=10.6
Q ss_pred HHHHHhCCCCCCcccHHHHHH
Q psy2947 375 DAFKAADTTKSGTVPAKYLKH 395 (441)
Q Consensus 375 ~~f~~~D~~~~G~is~~ef~~ 395 (441)
++|+.+|.|+||.|+.+||++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 345555555555555555544
No 126
>KOG1644|consensus
Probab=97.82 E-value=3.1e-05 Score=65.41 Aligned_cols=81 Identities=33% Similarity=0.445 Sum_probs=56.5
Q ss_pred CCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEEccCCCCCccc--hhhcCCCCCCEE
Q psy2947 81 DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTV 157 (441)
Q Consensus 81 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L 157 (441)
.....+||++|.+..++ .|..+..|.+|.+++|+|+ .+.+.+ .-+++|..|.|.+|.|..+- ..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt--~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRIT--RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcce--eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34567777777777553 3667777888888888887 555555 34566888888888776554 345667788888
Q ss_pred EccCCcC
Q psy2947 158 YRHGNHN 164 (441)
Q Consensus 158 ~l~~N~~ 164 (441)
.+-+|+.
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 8888875
No 127
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.77 E-value=0.00013 Score=55.92 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
.....+|+..|. ++|.|+.++.+.++..-| ++.+.+..|+...|.|++|.++++||+-+|
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 345556666653 456666666666666555 566666666666666666666666666544
No 128
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.75 E-value=9.2e-05 Score=47.64 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
+++.|++.+++.++..++++-+..+|+..|++++|.+..+||+.+..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67788888888888888888888888888888888888888877654
No 129
>KOG1644|consensus
Probab=97.74 E-value=5.4e-05 Score=63.98 Aligned_cols=100 Identities=25% Similarity=0.327 Sum_probs=63.0
Q ss_pred CcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccC-CCCCcEEEccCCcCCCCCCch--hhhcCCCCCEEE
Q psy2947 61 SHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPF--TLTFCKNLTHLY 135 (441)
Q Consensus 61 ~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~ 135 (441)
.+...+||++|.+- ..+..++.|.+|.|++|+|+.|.+.+.. +++|..|.+.+|.|. .+.+ .+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~--~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ--ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh--hhhhcchhccCCccceee
Confidence 34566777777543 3455667777777777777776666443 455777777777776 4432 245667777777
Q ss_pred ccCCCCCccc----hhhcCCCCCCEEEccCC
Q psy2947 136 LDNNLLDALP----GFLLSMPQLDTVYRHGN 162 (441)
Q Consensus 136 l~~n~l~~lp----~~~~~l~~L~~L~l~~N 162 (441)
+-+|++...+ -.+..+++|+.||...-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777776544 23455667777666543
No 130
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.69 E-value=5.2e-05 Score=41.58 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q psy2947 336 VVDAFKAADTTKSGKLSFPDFLKVM 360 (441)
Q Consensus 336 ~~~~f~~~D~d~~g~i~~~ef~~~~ 360 (441)
++++|+.+|.|+||.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3578999999999999999998864
No 131
>KOG0040|consensus
Probab=97.55 E-value=0.0011 Score=70.78 Aligned_cols=119 Identities=21% Similarity=0.331 Sum_probs=85.7
Q ss_pred HhCCCcccHHHHHHHHHhhcCCCCC------HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-CCCChHHHHHHHHHh
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKAEDI------PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAA 380 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~ 380 (441)
++++|.+++++|...++......++ +.+++++...+|++.+|+|+..|+.++|-.... .-...+.|+.+|+..
T Consensus 2264 kek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2264 KEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRAL 2343 (2399)
T ss_pred hhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHh
Confidence 4678888888888777765544322 347888999999999999999999998865432 223356899999999
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH----hCCC----CCCceeHHHHHHHHh
Q psy2947 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE----ANVT----MNSKVRYEDFVKIAC 434 (441)
Q Consensus 381 D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~----~d~d----~dg~i~~~ef~~~l~ 434 (441)
|. +.-+|+.++..+.| +.++++..+.+ +|+. -.+.+.|.+|++.+.
T Consensus 2344 ~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2344 DA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred hc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 98 88999999987655 44555444443 3321 124699999998764
No 132
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.55 E-value=0.00011 Score=42.81 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMH 361 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~ 361 (441)
+++.+|+.+|.|++|+|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999887
No 133
>KOG0040|consensus
Probab=97.52 E-value=0.00025 Score=75.23 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCC
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG--EGLS 405 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~------~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~--~~l~ 405 (441)
.++.-+|+.||.+.+|.++..+|...++.+...- ..+.+++++....|++.+|+|+..|..++|.... .-.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 4567789999999999999999999998775332 2234899999999999999999999999998643 2357
Q ss_pred HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 406 SKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 406 ~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
.++++..|+.+|. +.-.|+.++....|.+
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~~~ltr 2361 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELYQNLTR 2361 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHHhcCCH
Confidence 7799999999987 6667888777554433
No 134
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.0004 Score=66.40 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCCCCCCcccEEeccCC----CcCcccCCCCCCCEEEccCC-CCCcCCcCccCCCCCcEEEccCCcCCC-CCCchhhhcC
Q psy2947 55 WIPQYFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSN-SLTSLPPDIGRLTNLRVLCLTDNCLQN-ASIPFTLTFC 128 (441)
Q Consensus 55 ~~~~~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~p~~~~~l 128 (441)
.+|....+|+.|.++++ .+|..+. ++|+.|++++| .+..+|+. |+.|++++|.... +.+|.+
T Consensus 66 sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPss---- 133 (426)
T PRK15386 66 SLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNG---- 133 (426)
T ss_pred ccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcch----
Confidence 33443457999999876 3454442 68999999998 67777754 6677787766430 245544
Q ss_pred CCCCEEEccCCC-C--CccchhhcCC-CCCCEEEccCCcCccCcccccccccccccccccch
Q psy2947 129 KNLTHLYLDNNL-L--DALPGFLLSM-PQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTST 186 (441)
Q Consensus 129 ~~L~~L~l~~n~-l--~~lp~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~ 186 (441)
|+.|.+.+++ . ..+|. .+ ++|++|.+++|.... ++..+|.++..|..
T Consensus 134 --Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~------LP~~LP~SLk~L~l 184 (426)
T PRK15386 134 --LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII------LPEKLPESLQSITL 184 (426)
T ss_pred --Hhheecccccccccccccc---ccCCcccEEEecCCCccc------CcccccccCcEEEe
Confidence 4455554322 1 12221 12 568888888776432 33456666666554
No 135
>KOG2562|consensus
Probab=97.45 E-value=0.001 Score=62.96 Aligned_cols=126 Identities=13% Similarity=0.211 Sum_probs=88.4
Q ss_pred hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH--------hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947 265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA--------EKGGKLSFPDFLKVMHTHSKAEDIPK 334 (441)
Q Consensus 265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~--------~~~g~i~~~ef~~~~~~~~~~~~~~~ 334 (441)
...+-..|-.+|+| |.+ +++++..+-.... +...+++++. ..+|+++|++|+.++-.. ..+....
T Consensus 277 f~viy~kFweLD~Dhd~li-dk~~L~ry~d~tl---t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~ 351 (493)
T KOG2562|consen 277 FYVIYCKFWELDTDHDGLI-DKEDLKRYGDHTL---TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPA 351 (493)
T ss_pred HHHHHHHHhhhcccccccc-CHHHHHHHhccch---hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCcc
Confidence 33333446667775 788 7888776654433 3445566665 368999999999988755 3345667
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhc-------cCCCC-hHHHHHHHHHhCCCCCCcccHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHS-------KAEDI-PKEVVDAFKAADTTKSGTVPAKYLKH 395 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-------~~~~~-~~~~~~~f~~~D~~~~G~is~~ef~~ 395 (441)
.+...|+.+|.+++|.++..|+.-+..... -+... ++.+-++|.+..+...+.||.++|+.
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 889999999999999999988876544321 11111 34556788888888899999999977
No 136
>KOG1909|consensus
Probab=97.43 E-value=4.2e-05 Score=69.88 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=88.3
Q ss_pred CCcccEEeccCCCc--------CcccCCCCCCCEEEccCCC---CC-cCCcC-------ccCCCCCcEEEccCCcCCCCC
Q psy2947 60 FSHAFLLSLSYTPI--------GRRIFKCDTVEVLSLKSNS---LT-SLPPD-------IGRLTNLRVLCLTDNCLQNAS 120 (441)
Q Consensus 60 l~~L~~l~l~~n~i--------~~~~~~l~~L~~L~l~~n~---l~-~lp~~-------~~~l~~L~~L~l~~n~l~~~~ 120 (441)
...++.++||+|.| ...+.+.+.|+..++|.-- +. .+|+. +-..++|+.|+||.|-+.. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~-~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP-K 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc-c
Confidence 45677778887743 2455566677777776431 22 44443 3334577777777777651 2
Q ss_pred Cchh----hhcCCCCCEEEccCCCCCccch--------------hhcCCCCCCEEEccCCcCccCccccccccccccccc
Q psy2947 121 IPFT----LTFCKNLTHLYLDNNLLDALPG--------------FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR 182 (441)
Q Consensus 121 ~p~~----~~~l~~L~~L~l~~n~l~~lp~--------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~ 182 (441)
-+.. +.++.+|++|+|.+|.++..-. ..+.-+.|+.+..+.|++....... +-..++
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~-----~A~~~~ 182 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA-----LAEAFQ 182 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH-----HHHHHH
Confidence 2222 3556677777777777753321 1233456777777777754333211 122333
Q ss_pred ccchhHHH-Hhhccc-----ccCCchhhhhhhhcccccccccCCC
Q psy2947 183 STSTRDEV-LRKQKK-----LHQPSRLQDLAVQSVIASKENFFEP 221 (441)
Q Consensus 183 ~l~~~~~~-l~~~~~-----~~~p~~l~~l~~l~~l~l~~n~~~~ 221 (441)
..+.+..+ +..|.+ +-+...+..+++|++|+++.|.|..
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 33333333 333322 2234567888999999999997763
No 137
>KOG2982|consensus
Probab=97.40 E-value=6.3e-05 Score=67.30 Aligned_cols=81 Identities=26% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCCCCEEEccCCCCC---cCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEEccCCCC--CccchhhcCCCC
Q psy2947 80 CDTVEVLSLKSNSLT---SLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLYLDNNLL--DALPGFLLSMPQ 153 (441)
Q Consensus 80 l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~l--~~lp~~~~~l~~ 153 (441)
++.++.|+|.+|.|+ ++..-+.+|+.|++|+++.|.+. ..|. ++ ..+.+|+.|-|.+..+ +.+...+..+|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-Cccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566666666665 22222455666666666666554 1221 11 2344556665555544 233344455555
Q ss_pred CCEEEccCC
Q psy2947 154 LDTVYRHGN 162 (441)
Q Consensus 154 L~~L~l~~N 162 (441)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 566666655
No 138
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.35 E-value=0.00082 Score=43.32 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
+++.|.+.+++... -...++....+|+.+|++++|.+..+||..+++.+
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46667776666652 23335677788999999999999999998888753
No 139
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.33 E-value=0.0011 Score=50.80 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
......+|...|. ++|.|+-++.+.++... ....+.+..+|...|.+++|+++.+||.-+|+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3567788888885 68999999998876643 45578999999999999999999999998886
No 140
>KOG1909|consensus
Probab=97.29 E-value=6.4e-05 Score=68.72 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=61.9
Q ss_pred CCCCCCEEEccCCCCC-cCCcC----ccCCCCCcEEEccCCcCCCCCCchh--------------hhcCCCCCEEEccCC
Q psy2947 79 KCDTVEVLSLKSNSLT-SLPPD----IGRLTNLRVLCLTDNCLQNASIPFT--------------LTFCKNLTHLYLDNN 139 (441)
Q Consensus 79 ~l~~L~~L~l~~n~l~-~lp~~----~~~l~~L~~L~l~~n~l~~~~~p~~--------------~~~l~~L~~L~l~~n 139 (441)
.++.|++|+||.|-|. .-++. +.+.+.|++|.|.+|.+. ..... .+.-+.|++++.+.|
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg--~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG--PEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC--hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4445666666666555 11111 444555666666665553 21111 112245555666666
Q ss_pred CCCccc-----hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc-----CCchhhhhhh
Q psy2947 140 LLDALP-----GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH-----QPSRLQDLAV 208 (441)
Q Consensus 140 ~l~~lp-----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~-----~p~~l~~l~~ 208 (441)
++..-+ ..|...+.|+.+.+..|.+..... ..+-..+...+.+..+ ++.|.++. +...+..++.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-----~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-----TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchh-----HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 554332 334445555566665555433221 0112233334444444 44444322 2334556666
Q ss_pred hcccccccccC
Q psy2947 209 QSVIASKENFF 219 (441)
Q Consensus 209 l~~l~l~~n~~ 219 (441)
|+.++++...+
T Consensus 243 L~El~l~dcll 253 (382)
T KOG1909|consen 243 LRELNLGDCLL 253 (382)
T ss_pred heeeccccccc
Confidence 66666665533
No 141
>KOG2562|consensus
Probab=97.29 E-value=0.00093 Score=63.21 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=86.2
Q ss_pred HHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHh----hcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC
Q psy2947 306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA----ADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD 381 (441)
Q Consensus 306 ~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~----~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 381 (441)
++.|++|.|+-+++...-. ...+.--+.++|.. +=.-.+|.+++++|.-++-.. .......-++-.|+..|
T Consensus 287 LD~Dhd~lidk~~L~ry~d----~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~SleYwFrclD 361 (493)
T KOG2562|consen 287 LDTDHDGLIDKEDLKRYGD----HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPASLEYWFRCLD 361 (493)
T ss_pred hccccccccCHHHHHHHhc----cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCccchhhheeeee
Confidence 3456788888777655432 22334557777773 334568999999999988777 34445667888999999
Q ss_pred CCCCCcccHHHHHHHHHH-------hC-CCCC-HHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 382 TTKSGTVPAKYLKHVLVN-------WG-EGLS-SKEVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 382 ~~~~G~is~~ef~~~l~~-------~~-~~l~-~~~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
.+++|.++..|++-+... +| .+++ ++.+.+++..+-....++|+..+|..
T Consensus 362 ld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 362 LDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999777654 23 2333 44456777777656688999999986
No 142
>KOG2982|consensus
Probab=97.26 E-value=4.9e-05 Score=67.98 Aligned_cols=105 Identities=23% Similarity=0.170 Sum_probs=73.7
Q ss_pred CCCcccEEeccCCCcC------cccCCCCCCCEEEccCCCCCcCCcCc-cCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947 59 YFSHAFLLSLSYTPIG------RRIFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNL 131 (441)
Q Consensus 59 ~l~~L~~l~l~~n~i~------~~~~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 131 (441)
..++++.++|..|.|. ..+.+++.|+.|+|+.|++...-..+ ..+.+|+.|.|.+..+.+...-+.+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3578899999999765 34568999999999999988322222 3578899999999887744455556888999
Q ss_pred CEEEccCCCCCccc---hhhcCC-CCCCEEEccCCc
Q psy2947 132 THLYLDNNLLDALP---GFLLSM-PQLDTVYRHGNH 163 (441)
Q Consensus 132 ~~L~l~~n~l~~lp---~~~~~l-~~L~~L~l~~N~ 163 (441)
+.|++|.|.+..+- ...... +.+++|++..|.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL 184 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcH
Confidence 99999999665331 111222 345666666665
No 143
>KOG2739|consensus
Probab=97.17 E-value=0.00024 Score=62.67 Aligned_cols=79 Identities=28% Similarity=0.264 Sum_probs=37.3
Q ss_pred cCCCCCCCEEEccCC--CCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhh---hcCCCCCEEEccCCCCCccc----h
Q psy2947 77 IFKCDTVEVLSLKSN--SLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTL---TFCKNLTHLYLDNNLLDALP----G 146 (441)
Q Consensus 77 ~~~l~~L~~L~l~~n--~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~l~~L~~L~l~~n~l~~lp----~ 146 (441)
+..+++|+.|.+|.| ++. .++.-...+++|++|++++|+|+ +++++ ..+.+|..|++.+|....+- .
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 344556666666666 333 33333333456666666666654 12222 33444555555555444332 2
Q ss_pred hhcCCCCCCEEE
Q psy2947 147 FLLSMPQLDTVY 158 (441)
Q Consensus 147 ~~~~l~~L~~L~ 158 (441)
.|.-+++|++|+
T Consensus 138 vf~ll~~L~~LD 149 (260)
T KOG2739|consen 138 VFLLLPSLKYLD 149 (260)
T ss_pred HHHHhhhhcccc
Confidence 233345554443
No 144
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.15 E-value=3.6e-05 Score=48.80 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=27.4
Q ss_pred CccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCccCCCCccC
Q psy2947 7 NNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICS 52 (441)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~~~~~~c~ 52 (441)
+.|+.||++||+++..+|...+.+|+......| |+ |.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~---C~-W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP---CS-WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C---CC-STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCC---ee-eccEEeC
Confidence 568899999999999887778889988641223 56 4689884
No 145
>KOG2739|consensus
Probab=97.14 E-value=0.00035 Score=61.61 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=60.6
Q ss_pred CCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCC--cCCCCCCchhhhcCCCCCEEEccCCCCCccc--hhhcCCCC
Q psy2947 78 FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN--CLQNASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMPQ 153 (441)
Q Consensus 78 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n--~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~ 153 (441)
-.+..|+.|.+.+..++.+ ..+..|++|+.|.+|.| ++. +.++.-...+++|++|++++|+|..+. ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3445677777777776644 23567889999999999 666 556555566799999999999886542 23456777
Q ss_pred CCEEEccCCc
Q psy2947 154 LDTVYRHGNH 163 (441)
Q Consensus 154 L~~L~l~~N~ 163 (441)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 8888888877
No 146
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.04 E-value=0.002 Score=47.45 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhccCC
Q psy2947 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWG-E-GLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAPVP 438 (441)
Q Consensus 372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~-~l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~~~ 438 (441)
+|+.+|+.+-. +.+.||.++|+++|+... . .++.++++.++.++..+ ..+.+++++|.++|....+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 46788988844 789999999999998743 3 46889999999988644 3688999999999977644
No 147
>KOG0751|consensus
Probab=97.01 E-value=0.01 Score=56.61 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=90.6
Q ss_pred CcCHHHHHHHH-------HhCCCcccHHHHHHHHHhhcCCCCCHHHHHH-HHHhhcCCCCCcccHHHHHHHHHhhccCCC
Q psy2947 297 SPTIAELKKYL-------AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHSKAED 368 (441)
Q Consensus 297 ~~~~~~~~~~~-------~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~-~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~ 368 (441)
...+.++..++ .++....+-++|+...-..........+... +-...|...||-|+++||+.+=..+. ..
T Consensus 29 ra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC-~p- 106 (694)
T KOG0751|consen 29 RADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC-AP- 106 (694)
T ss_pred cCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc-Cc-
Confidence 44556665554 2345568999999887766665444444444 45566888899999999987655442 22
Q ss_pred ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC--CC-HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG--LS-SKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~--l~-~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
+.....+|+.||+.++|.+|.+++.+++...... .+ +-+-+.+=..+..+..-.++|.||.+++-.
T Consensus 107 -Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 107 -DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred -hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHH
Confidence 4566789999999999999999999999875421 11 112222333333334457999999988743
No 148
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.00 E-value=0.00019 Score=63.45 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=95.0
Q ss_pred CCcccEEeccCCCcC--------cccCCCCCCCEEEccCCCCC----cCCc-------CccCCCCCcEEEccCCcCCCCC
Q psy2947 60 FSHAFLLSLSYTPIG--------RRIFKCDTVEVLSLKSNSLT----SLPP-------DIGRLTNLRVLCLTDNCLQNAS 120 (441)
Q Consensus 60 l~~L~~l~l~~n~i~--------~~~~~l~~L~~L~l~~n~l~----~lp~-------~~~~l~~L~~L~l~~n~l~~~~ 120 (441)
+..++.++||+|.|. ..|.+-.+|+..+++.-... .+|. .+-++++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-SE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-cc
Confidence 567788999999654 34555678888887754322 3333 3556788999999999886 45
Q ss_pred Cchh----hhcCCCCCEEEccCCCCCccc-hhh-------------cCCCCCCEEEccCCcCccCccccccccccccccc
Q psy2947 121 IPFT----LTFCKNLTHLYLDNNLLDALP-GFL-------------LSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR 182 (441)
Q Consensus 121 ~p~~----~~~l~~L~~L~l~~n~l~~lp-~~~-------------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~ 182 (441)
.|.. +++-..|.+|.+++|.++.+. .-+ .+-|.|+......|++...+.-.| -..+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~-----a~~l~ 182 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS-----AALLE 182 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH-----HHHHH
Confidence 5543 356678999999999887654 112 234778888888888644332211 00111
Q ss_pred ccchhHHH-HhhcccccCCc--------hhhhhhhhcccccccccCCC
Q psy2947 183 STSTRDEV-LRKQKKLHQPS--------RLQDLAVQSVIASKENFFEP 221 (441)
Q Consensus 183 ~l~~~~~~-l~~~~~~~~p~--------~l~~l~~l~~l~l~~n~~~~ 221 (441)
+-..++.+ +..|.+ -|. .+..+.+|.+|+++.|.++.
T Consensus 183 sh~~lk~vki~qNgI--rpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 183 SHENLKEVKIQQNGI--RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred hhcCceeEEeeecCc--CcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 11111111 222222 132 35566799999999998763
No 149
>KOG3665|consensus
Probab=96.99 E-value=0.00027 Score=73.04 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCC
Q psy2947 79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140 (441)
Q Consensus 79 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 140 (441)
++++|..||+|+.+++.+ .++++|.+|+.|.+.+=.+.....=..+.+|++|++||+|...
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 344555555555555544 3445555555554444333300001133445555555555443
No 150
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.99 E-value=0.00034 Score=54.70 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
..+.-.|...|.|+||.|+..|++.+...+. ..+..+...++..|.|+||.||..|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4556668888888888888888777665442 3344567778888888888888888764
No 151
>KOG3665|consensus
Probab=96.93 E-value=0.00073 Score=69.92 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=55.6
Q ss_pred CcccEEeccCCC-c----CcccC-CCCCCCEEEccCCCCC--cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947 61 SHAFLLSLSYTP-I----GRRIF-KCDTVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132 (441)
Q Consensus 61 ~~L~~l~l~~n~-i----~~~~~-~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 132 (441)
.+|+.|++++.. + |..++ .+|+|+.|.+++-.+. .+-.-..++++|..||+|+.+++ .+ .++++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--Cc-HHHhccccHH
Confidence 456666666652 1 22233 3566666666665544 22222445666666777776665 44 4566666666
Q ss_pred EEEccCCCCCccc--hhhcCCCCCCEEEccCCc
Q psy2947 133 HLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163 (441)
Q Consensus 133 ~L~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~ 163 (441)
.|.+.+=.+..-. ..+.+|++|+.||+|...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 6666554443322 344556666666666654
No 152
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.92 E-value=0.00053 Score=53.63 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 395 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~ 395 (441)
...+...|..+|.|+||.++..|+..+-..+ ...+.-++..|+..|.|+||.||..|...
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4668888999999999999999988765544 22244577899999999999999999753
No 153
>KOG4666|consensus
Probab=96.79 E-value=0.0009 Score=60.22 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=77.6
Q ss_pred HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 387 (441)
..++|.+++.|....+.-...+.....-++.+|+.|+.+.||.+.-++|.-+++...+-. +-++-..|...++..+|+
T Consensus 270 e~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~lf~~i~q~d~~k 347 (412)
T KOG4666|consen 270 EGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVLFPSIEQKDDPK 347 (412)
T ss_pred CCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeeccccchhhhcccCcc
Confidence 467899999999998888888888899999999999999999999999988887653322 234567899999999999
Q ss_pred ccHHHHHHHHHHhC
Q psy2947 388 VPAKYLKHVLVNWG 401 (441)
Q Consensus 388 is~~ef~~~l~~~~ 401 (441)
|++++|++++...+
T Consensus 348 i~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 348 IYASNFRKFAATEP 361 (412)
T ss_pred eeHHHHHHHHHhCc
Confidence 99999999987644
No 154
>KOG0473|consensus
Probab=96.76 E-value=3.7e-05 Score=66.32 Aligned_cols=87 Identities=22% Similarity=0.171 Sum_probs=78.8
Q ss_pred ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCC
Q psy2947 76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155 (441)
Q Consensus 76 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~ 155 (441)
.+......+.||++.|++..+...|+-++.|..|+++.|++. .+|..++.+..++++++..|+.+..|.+++..+.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 455667789999999999988888999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEccCCcC
Q psy2947 156 TVYRHGNHN 164 (441)
Q Consensus 156 ~L~l~~N~~ 164 (441)
++++-+|++
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 999999984
No 155
>KOG2123|consensus
Probab=96.63 E-value=0.00012 Score=64.86 Aligned_cols=77 Identities=31% Similarity=0.343 Sum_probs=41.6
Q ss_pred CcccEEeccCCCcCc--ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCch--hhhcCCCCCEEEc
Q psy2947 61 SHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF--TLTFCKNLTHLYL 136 (441)
Q Consensus 61 ~~L~~l~l~~n~i~~--~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l 136 (441)
.+++.|+.-++.+.. ....++.|++|.||-|.|+.+. .+..+++|++|+|..|.|. .+.. -+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~--sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIE--SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccc--cHHHHHHHhcCchhhhHhh
Confidence 334444444443331 1235666667766666666552 2555666666666666665 4432 1355566666666
Q ss_pred cCCC
Q psy2947 137 DNNL 140 (441)
Q Consensus 137 ~~n~ 140 (441)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 6554
No 156
>KOG0046|consensus
Probab=96.58 E-value=0.0064 Score=58.48 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL---SSKEVDQIFREANVTMNSKVRYEDFVKI 432 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l---~~~~~~~l~~~~d~d~dg~i~~~ef~~~ 432 (441)
+++.|...| +++|+|+..|+..++.+.+.+. ..+++++++...+.|.+|.|+||||+..
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGI 82 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHH
Confidence 334455555 5555555555555555544322 3455555555555555555555555553
No 157
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.53 E-value=0.0032 Score=35.15 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=14.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 374 VDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 374 ~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
+.+|+.+|.+++|.|++.||..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555566555555554
No 158
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.00095 Score=35.30 Aligned_cols=18 Identities=44% Similarity=0.722 Sum_probs=8.2
Q ss_pred CCEEEccCCCCCcCCcCc
Q psy2947 83 VEVLSLKSNSLTSLPPDI 100 (441)
Q Consensus 83 L~~L~l~~n~l~~lp~~~ 100 (441)
|++|+|++|+|+.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 159
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.26 E-value=0.0015 Score=34.53 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=6.9
Q ss_pred CCEEEccCCCCCccch
Q psy2947 131 LTHLYLDNNLLDALPG 146 (441)
Q Consensus 131 L~~L~l~~n~l~~lp~ 146 (441)
|++|+|++|+|+.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 160
>KOG4065|consensus
Probab=96.17 E-value=0.011 Score=44.72 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=34.8
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHh------C---CCC-CHHH----HHHHHHHhCCCCCCceeHHHHHHH
Q psy2947 377 FKAADTTKSGTVPAKYLKHVLVNW------G---EGL-SSKE----VDQIFREANVTMNSKVRYEDFVKI 432 (441)
Q Consensus 377 f~~~D~~~~G~is~~ef~~~l~~~------~---~~l-~~~~----~~~l~~~~d~d~dg~i~~~ef~~~ 432 (441)
|.+.|-|+++.++--|+.+++... | .++ ++.+ ++.+++.-|.++||.|+|.||...
T Consensus 73 F~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 73 FSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 555566666666666665555431 2 122 3333 445666777889999999999864
No 161
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.00 E-value=0.0087 Score=33.23 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947 336 VVDAFKAADTTKSGKLSFPDFLKVMHT 362 (441)
Q Consensus 336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~ 362 (441)
++.+|+.+|.+++|.|++.||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988764
No 162
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.99 E-value=0.016 Score=42.60 Aligned_cols=64 Identities=8% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhccC-CCChHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTT----KSGTVPAKYLKHVLVN 399 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~----~~G~is~~ef~~~l~~ 399 (441)
++..+|+.+.. +.+.|+.++|..++...++. ..+.+.+..++..|..+ ..+.+|.++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36788888865 78999999999999877666 34578889999888554 4799999999999975
No 163
>KOG2123|consensus
Probab=95.89 E-value=0.00046 Score=61.34 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=66.7
Q ss_pred CCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc--hhhcCCCCCCEE
Q psy2947 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTV 157 (441)
Q Consensus 80 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L 157 (441)
+.+.+.|+.-++.|+.|. -...|+.|+.|.||-|.|+ ++. .+..+++|+.|+|..|.|..+- .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIs--sL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKIS--SLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccc--cch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456778888888888442 1457899999999999998 664 5788999999999999998886 567899999999
Q ss_pred EccCCc
Q psy2947 158 YRHGNH 163 (441)
Q Consensus 158 ~l~~N~ 163 (441)
.|..|+
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 999998
No 164
>KOG0169|consensus
Probab=95.87 E-value=0.14 Score=52.23 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=90.1
Q ss_pred HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387 (441)
Q Consensus 308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 387 (441)
.+++|.+++.+-..++..... ......+..+|+..|..+++.+...+|..+-...... . ++..+|..+-. +.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r---p-ev~~~f~~~s~-~~~~ 220 (746)
T KOG0169|consen 147 KNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR---P-EVYFLFVQYSH-GKEY 220 (746)
T ss_pred cccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC---c-hHHHHHHHHhC-CCCc
Confidence 467788888877777765532 2445667777888888888999999998877766322 2 67778877743 4899
Q ss_pred ccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhcc
Q psy2947 388 VPAKYLKHVLVNWG--EGLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAP 436 (441)
Q Consensus 388 is~~ef~~~l~~~~--~~l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~ 436 (441)
++.+++..++.... ...+.+.++.+++.+..- ..+.++.+.|.++|...
T Consensus 221 ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 221 LSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred cCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 99999999998754 357788888888887532 34569999999998543
No 165
>KOG1029|consensus
Probab=95.75 E-value=0.1 Score=52.77 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
..+.+|...|+...|++|-..-+.++..-+ ++..++..|....|.|+||+++.+||+-+|
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 567799999999999999999999997766 888999999999999999999999998765
No 166
>KOG2120|consensus
Probab=95.66 E-value=0.00072 Score=60.74 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=81.0
Q ss_pred CCCEEEccCCCCC--cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCC-CCCcc--chhhcCCCCCCE
Q psy2947 82 TVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN-LLDAL--PGFLLSMPQLDT 156 (441)
Q Consensus 82 ~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~l--p~~~~~l~~L~~ 156 (441)
.|++||||...|+ .+-.-++.+.+|+.|.+.++++. ..+-..++...+|+.|+|+.+ .|+.. ...+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4888888888887 44444777888888888888887 455566777888888888854 56543 345677888888
Q ss_pred EEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhccccccccc
Q psy2947 157 VYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENF 218 (441)
Q Consensus 157 L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n~ 218 (441)
|+++-+.+.... ..-....+-+.+..|...... ++-...++..-....+++..|+++.+.
T Consensus 265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~r-rnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYR-RNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchh-hhHHHhhhchhhhhhhhhhhH-hhhhhhHHHHHHHhCCceeeecccccc
Confidence 888887753322 111222233333333222111 111112233233567788888888764
No 167
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.52 E-value=0.0087 Score=29.29 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=5.7
Q ss_pred CCCEEEccCCCCCcC
Q psy2947 82 TVEVLSLKSNSLTSL 96 (441)
Q Consensus 82 ~L~~L~l~~n~l~~l 96 (441)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344455555544443
No 168
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.40 E-value=0.0065 Score=54.11 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCcccEEeccCC-------CcC-------cccCCCCCCCEEEccCCCCC-cCCcC----ccCCCCCcEEEccCCcCCCCC
Q psy2947 60 FSHAFLLSLSYT-------PIG-------RRIFKCDTVEVLSLKSNSLT-SLPPD----IGRLTNLRVLCLTDNCLQNAS 120 (441)
Q Consensus 60 l~~L~~l~l~~n-------~i~-------~~~~~l~~L~~L~l~~n~l~-~lp~~----~~~l~~L~~L~l~~n~l~~~~ 120 (441)
-.+|+..+++.- .++ +.+.+|++|+..+||.|-+. ..|+. +++-+.|.+|.+++|.+- .
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG--p 134 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG--P 134 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC--c
Confidence 456777777654 233 45667899999999999888 45543 777888999999999874 3
Q ss_pred Cch-----hh---------hcCCCCCEEEccCCCCCccc-----hhhcCCCCCCEEEccCCcC
Q psy2947 121 IPF-----TL---------TFCKNLTHLYLDNNLLDALP-----GFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 121 ~p~-----~~---------~~l~~L~~L~l~~n~l~~lp-----~~~~~l~~L~~L~l~~N~~ 164 (441)
+.. .+ .+-+.|+..+...|++..-| ..+.....|+.+.+..|.+
T Consensus 135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 322 11 23467899999999886555 2334446788888888886
No 169
>KOG0473|consensus
Probab=95.37 E-value=0.00036 Score=60.37 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=73.1
Q ss_pred CCCcccEEeccCCC---cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947 59 YFSHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135 (441)
Q Consensus 59 ~l~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 135 (441)
.+...+.||++.|. +...+..++.|..|+++.|++..+|..++++..++.+++..|.++ ..|.+++.++.+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~--~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS--QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh--hCCccccccCCcchhh
Confidence 36788999999994 456666778899999999999999999999999999999999998 9999999999999999
Q ss_pred ccCCCCC
Q psy2947 136 LDNNLLD 142 (441)
Q Consensus 136 l~~n~l~ 142 (441)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998864
No 170
>KOG2120|consensus
Probab=95.25 E-value=0.0013 Score=59.14 Aligned_cols=79 Identities=27% Similarity=0.308 Sum_probs=53.6
Q ss_pred CcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCc-CCCCCCch--hhhcCCCC
Q psy2947 61 SHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNC-LQNASIPF--TLTFCKNL 131 (441)
Q Consensus 61 ~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~-l~~~~~p~--~~~~l~~L 131 (441)
+.|++||||...|. .-+..+..|+.|.|.++++. .+-..+..-.+|+.|+++.+. ++ .... -+.+++.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--ENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--hhHHHHHHHhhhhH
Confidence 46899999988554 33456778888888888877 555567777788888887643 43 2111 23667777
Q ss_pred CEEEccCCCC
Q psy2947 132 THLYLDNNLL 141 (441)
Q Consensus 132 ~~L~l~~n~l 141 (441)
..|+|+++.+
T Consensus 263 ~~LNlsWc~l 272 (419)
T KOG2120|consen 263 DELNLSWCFL 272 (419)
T ss_pred hhcCchHhhc
Confidence 7777777765
No 171
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.22 E-value=0.012 Score=28.76 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=3.9
Q ss_pred CcEEEccCCcCC
Q psy2947 106 LRVLCLTDNCLQ 117 (441)
Q Consensus 106 L~~L~l~~n~l~ 117 (441)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 172
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.13 E-value=0.066 Score=42.82 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=41.9
Q ss_pred CcccEEeccCC--CcCc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEE
Q psy2947 61 SHAFLLSLSYT--PIGR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLY 135 (441)
Q Consensus 61 ~~L~~l~l~~n--~i~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~ 135 (441)
++|+.+.+..+ .|+. .+..+++|+.+.+..+ +..++.. |..+.+|+.+.+.. .+. .++. .+..+.+|+.+.
T Consensus 12 ~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~--~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK--SIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT---EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc--ccccccccccccccccc
Confidence 34455555433 2332 3444556667766654 5555554 55665667776654 332 3333 335566666666
Q ss_pred ccCCCCCccc-hhhcCCCCCCEEEccC
Q psy2947 136 LDNNLLDALP-GFLLSMPQLDTVYRHG 161 (441)
Q Consensus 136 l~~n~l~~lp-~~~~~l~~L~~L~l~~ 161 (441)
+..+ +..++ ..|.++ .|+.+.+..
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6554 55554 344444 666666554
No 173
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.91 E-value=0.41 Score=39.80 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-------CCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG-------LSSKEVDQIFREANVTMNSKVRYEDFVKI 432 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~-------l~~~~~~~l~~~~d~d~dg~i~~~ef~~~ 432 (441)
.+.++++|..+++.+.+.+|..|+.++++.-... ...-|+..+...+ .|.||.+..|....+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 4689999999999999999999999999874322 2345555566555 678999988876544
No 174
>KOG0046|consensus
Probab=94.88 E-value=0.097 Score=50.72 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
.+++.|...| |++|+|+..|...++..... +...+++++++....+.|.+|.|++|||..++..+
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3566788889 99999999999988876532 22336789999999999999999999999987654
No 175
>KOG0169|consensus
Probab=94.69 E-value=0.22 Score=50.78 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 412 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l 412 (441)
..-+..+|+..|.+.+|.+++.+...++..+. -......++..|+..|...+|.+..++++++......+. ++..+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 34567789999999999999999988877652 222345677889999999999999999999998876443 67788
Q ss_pred HHHhCCCCCCceeHHHHHHHHh
Q psy2947 413 FREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 413 ~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
|..+- ++.+.++.+++.+++.
T Consensus 211 f~~~s-~~~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 211 FVQYS-HGKEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHh-CCCCccCHHHHHHHHH
Confidence 88875 4478889888888875
No 176
>KOG3555|consensus
Probab=94.68 E-value=0.071 Score=48.76 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~ 401 (441)
..+..||..+|.|.||.++..|+..+-... .+.-++..|...|...||.|+-.|.-.-+..-+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 455666666666666666666655433221 133455566666666666666666655555444
No 177
>PLN02952 phosphoinositide phospholipase C
Probab=94.51 E-value=0.34 Score=49.12 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=31.3
Q ss_pred hCCCcccHHHHHHHHHhhcCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC
Q psy2947 309 EKGGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA 366 (441)
Q Consensus 309 ~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~ 366 (441)
++.|.++|++|..+.+.+... .....++..+|..+-.++ +.++.++|..++...++.
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDE 69 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCC
Confidence 445666666666665544321 224556666666664332 456666666666655443
No 178
>KOG4065|consensus
Probab=94.17 E-value=0.052 Score=41.29 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhcc----CC-----CChHH----HHHHHHHhCCCCCCcccHHHHHHH
Q psy2947 338 DAFKAADTTKSGKLSFPDFLKVMHTHSK----AE-----DIPKE----VVDAFKAADTTKSGTVPAKYLKHV 396 (441)
Q Consensus 338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~-----~~~~~----~~~~f~~~D~~~~G~is~~ef~~~ 396 (441)
.-|.+.|.|+++.++--|+..++..... +. ..+.+ |..+.+--|.++||+|++.||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3478899999999999998887764322 00 11233 444556668999999999999764
No 179
>KOG3555|consensus
Probab=93.79 E-value=0.27 Score=45.08 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 437 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~ 437 (441)
...+.-||...|.+.||.++..|++.+-.. -.+..++.+|...|...||.|+-.|+..+..++-
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 356778999999999999999999888654 3456789999999999999999999998876653
No 180
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.75 E-value=0.18 Score=40.25 Aligned_cols=82 Identities=18% Similarity=0.386 Sum_probs=51.9
Q ss_pred ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCC
Q psy2947 76 RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMP 152 (441)
Q Consensus 76 ~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~ 152 (441)
.+..+++|+.+.+.. .+..++.. |..+++|+.+.+..+ +. .++. .+.++.+|+.+.+.. .+..++ ..|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccc
Confidence 355677899999885 67778776 888889999999886 65 5665 457777899999965 666666 5666789
Q ss_pred CCCEEEccCC
Q psy2947 153 QLDTVYRHGN 162 (441)
Q Consensus 153 ~L~~L~l~~N 162 (441)
+|+.+.+..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 9999988765
No 181
>PLN02952 phosphoinositide phospholipase C
Probab=93.69 E-value=0.62 Score=47.33 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=56.4
Q ss_pred CCCcccHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHHh----C--
Q psy2947 347 KSGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-E-GLSSKEVDQIFREA----N-- 417 (441)
Q Consensus 347 ~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~-~l~~~~~~~l~~~~----d-- 417 (441)
+.|.+++++|..+.+.+.. ......++..+|..+-. +.+.|+.++|..++.... . ..+.++++.++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3578888888777666532 22246778888888843 446788888888887743 2 35666666665433 1
Q ss_pred -CCCCCceeHHHHHHHHhc
Q psy2947 418 -VTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 418 -~d~dg~i~~~ef~~~l~~ 435 (441)
..+.+.++++.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112345788888888754
No 182
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.27 E-value=0.085 Score=28.94 Aligned_cols=17 Identities=53% Similarity=0.712 Sum_probs=9.9
Q ss_pred CCCCEEEccCCCCCccc
Q psy2947 129 KNLTHLYLDNNLLDALP 145 (441)
Q Consensus 129 ~~L~~L~l~~n~l~~lp 145 (441)
++|++|+|++|+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45555666666665555
No 183
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.27 E-value=0.085 Score=28.94 Aligned_cols=17 Identities=53% Similarity=0.712 Sum_probs=9.9
Q ss_pred CCCCEEEccCCCCCccc
Q psy2947 129 KNLTHLYLDNNLLDALP 145 (441)
Q Consensus 129 ~~L~~L~l~~n~l~~lp 145 (441)
++|++|+|++|+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45555666666665555
No 184
>KOG4578|consensus
Probab=92.99 E-value=0.068 Score=48.53 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
.+..-|.++|.|.++.|+..|++-+=..+........-.+.+|++.|.|+|..|++.|++.-+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 35566899999999999999877655555444555566778999999999999999999888754
No 185
>KOG2243|consensus
Probab=92.74 E-value=0.17 Score=54.11 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=51.5
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 376 ~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.|+.+|+||.|.|+..||.++|.... .-++.+++.++.-...|.+...+|++|+.-.-.+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 47889999999999999999997643 4688899999999989999999999999765433
No 186
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.52 E-value=0.13 Score=28.24 Aligned_cols=20 Identities=50% Similarity=0.609 Sum_probs=12.3
Q ss_pred CCCCcEEEccCCcCCCCCCchh
Q psy2947 103 LTNLRVLCLTDNCLQNASIPFT 124 (441)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~p~~ 124 (441)
+++|+.|+|++|+|+ .+|..
T Consensus 1 L~~L~~L~L~~N~l~--~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS--SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC--cCCHH
Confidence 355666666666666 56654
No 187
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.52 E-value=0.13 Score=28.24 Aligned_cols=20 Identities=50% Similarity=0.609 Sum_probs=12.3
Q ss_pred CCCCcEEEccCCcCCCCCCchh
Q psy2947 103 LTNLRVLCLTDNCLQNASIPFT 124 (441)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~p~~ 124 (441)
+++|+.|+|++|+|+ .+|..
T Consensus 1 L~~L~~L~L~~N~l~--~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS--SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC--cCCHH
Confidence 355666666666666 56654
No 188
>KOG4347|consensus
Probab=91.69 E-value=0.69 Score=46.36 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHH
Q psy2947 314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYL 393 (441)
Q Consensus 314 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef 393 (441)
+.++.|..++.....-..+......+|+.+|.+++|.+++.+|...+..+..+ ..-+.+.-+|+.+|.+++ ....+|.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~-~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG-DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh-hHHHHHHHHHhhccCCcc-ccccccc
Confidence 33444444444333333344567888999999999999999999888776333 234677888999999999 8888887
No 189
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.77 E-value=0.13 Score=60.05 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=36.9
Q ss_pred EccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccc
Q psy2947 135 YLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDI 177 (441)
Q Consensus 135 ~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 177 (441)
||++|+|+.|| ..|..+++|+.|+|++|++.|.|.+.|+...+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL 44 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWA 44 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHH
Confidence 58899999998 67888999999999999999999988754433
No 190
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.58 E-value=1.4 Score=36.62 Aligned_cols=56 Identities=9% Similarity=0.133 Sum_probs=28.9
Q ss_pred cCCCCCcccHHHHHHHHHhhc--cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 344 DTTKSGKLSFPDFLKVMHTHS--KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 344 D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
...+...++-..|..+++... ........+..+|..+-..+...|++++|..+|..
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 334445566666666665432 22333455666666654444555666666666644
No 191
>KOG3866|consensus
Probab=90.49 E-value=0.6 Score=42.22 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=55.5
Q ss_pred cHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCHHHH-----------HHHHHH
Q psy2947 352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-----GEGLSSKEV-----------DQIFRE 415 (441)
Q Consensus 352 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-----~~~l~~~~~-----------~~l~~~ 415 (441)
+.+.++.+|...-+-....-.=+..|...|.++||.++-.|+...+..- ...=.++++ +.+++.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 4566666665542222111233567888899999999999988887641 111122222 258889
Q ss_pred hCCCCCCceeHHHHHHHHhc
Q psy2947 416 ANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 416 ~d~d~dg~i~~~ef~~~l~~ 435 (441)
+|.+.|..|+.+||+..-.+
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999987643
No 192
>KOG0035|consensus
Probab=89.96 E-value=0.67 Score=48.64 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS-----KEVDQIFREANVTMNSKVRYEDFVKIACAPVP 438 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~-----~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~ 438 (441)
.++++.|..+|+...|.++.++|.+.+..+|....+ +++..++...|.+.-|++++.+|...|.+.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 466777888888778888888888888777765543 22334555555555577888888887776543
No 193
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.34 E-value=0.17 Score=35.30 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--CC-----CCceeHHHHHHHH
Q psy2947 369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV--TM-----NSKVRYEDFVKIA 433 (441)
Q Consensus 369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~--d~-----dg~i~~~ef~~~l 433 (441)
+.+.+.+.|+.. .++.++||.+|+++.+.. ++++-++.++.. +. .|..+|..|++.|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 457889999999 788899999999998743 233555555542 11 2679999887643
No 194
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.11 E-value=0.27 Score=26.92 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=10.5
Q ss_pred CCCEEEccCCCCCcCCc
Q psy2947 82 TVEVLSLKSNSLTSLPP 98 (441)
Q Consensus 82 ~L~~L~l~~n~l~~lp~ 98 (441)
+|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666654
No 195
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.92 E-value=2.2 Score=35.62 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=78.8
Q ss_pred hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHh-------CCCcccHHHHHHHHHh----hcC---
Q psy2947 265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE-------KGGKLSFPDFLKVMHT----HSK--- 328 (441)
Q Consensus 265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~~~~~~----~~~--- 328 (441)
...+++-...+|+| |-| .+.|-=..++.+|....-..+..++-+ ..+-+.-.-|.-.+.. +.+
T Consensus 6 ~T~LQqHvaFFDrd~DGiI-~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGII-YPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeE-CHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 34455555666764 888 777777778888876544444333321 1111111111100110 000
Q ss_pred ------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC------hHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy2947 329 ------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI------PKEVVDAFKAADTTKSGTVPAKYLKHV 396 (441)
Q Consensus 329 ------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~f~~~D~~~~G~is~~ef~~~ 396 (441)
..-..++..++|..++..+.+.++..|+.++++......+. .-++..++... .+.+|.+..|+++.+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 11235789999999999999999999999999875322211 12455556555 678999999999887
Q ss_pred HH
Q psy2947 397 LV 398 (441)
Q Consensus 397 l~ 398 (441)
.-
T Consensus 164 YD 165 (174)
T PF05042_consen 164 YD 165 (174)
T ss_pred cc
Confidence 63
No 196
>KOG0042|consensus
Probab=88.49 E-value=0.9 Score=44.89 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
.+..|..+|.|+.|+++.++..+.|+..+...+++.+..++.+.|...+|.+..+||.+.+..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 446799999999999999999999999888899999999999999888999999999888753
No 197
>KOG1707|consensus
Probab=87.21 E-value=3.2 Score=41.47 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=92.6
Q ss_pred ceecccchHHHHHhhhccccC--CCccCHHHHHHH-HHHcCCCcCHHHHHHHH---Hh------CCCcccHHHHHHHHHh
Q psy2947 258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVI-MRSLGMSPTIAELKKYL---AE------KGGKLSFPDFLKVMHT 325 (441)
Q Consensus 258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~-~~~~~~~~~~~~~~~~~---~~------~~g~i~~~ef~~~~~~ 325 (441)
..+.+.-+..+.++|...|.+ |.+ +-.|+-.+ ..-++......+++.+. ++ .++.++..-|..+-..
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~L-sd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGAL-SDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred ccccHHHHHHHHHHHhhhcccccccc-chhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 345677788999999888875 777 55666444 44456555555555433 22 2456777777776554
Q ss_pred hcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 326 ~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
+.... -.+....+.+.|..+.+-.++-+=...-+..-- .....-+.+..+|..||.|+||.++.+|+..++...
T Consensus 266 fierg-r~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 266 FIERG-RHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHhc-cccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 43322 223334445555444333222111110000000 001112467889999999999999999999999876
Q ss_pred CCCC----CHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 401 GEGL----SSKEVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 401 ~~~l----~~~~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
.... ...+.-. .+..|.++++-|..
T Consensus 345 P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 345 PGSPWTSSPYKDSTV------KNERGWLTLNGFLS 373 (625)
T ss_pred CCCCCCCCcccccce------ecccceeehhhHHH
Confidence 4221 1111100 12468888887764
No 198
>KOG3866|consensus
Probab=87.16 E-value=1.8 Score=39.25 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc----cCCCChHHH-----------HHHHHH
Q psy2947 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS----KAEDIPKEV-----------VDAFKA 379 (441)
Q Consensus 315 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----~~~~~~~~~-----------~~~f~~ 379 (441)
|-+.+.+++....+-.+....-+.-|..+|.|+||.++-.|+.+++.... .....++++ +-+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 34555555554444333444456668889999999999999887665322 111111111 124677
Q ss_pred hCCCCCCcccHHHHHHHHH
Q psy2947 380 ADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 380 ~D~~~~G~is~~ef~~~l~ 398 (441)
.|++.|..||.+||-+.-.
T Consensus 305 vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cccchhhhhhHHHHHhhhh
Confidence 8999999999999976654
No 199
>KOG1265|consensus
Probab=86.25 E-value=7.6 Score=40.77 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCCCC----CCceeHHHHHHHHhc
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----------GEGLSSKEVDQIFREANVTM----NSKVRYEDFVKIACA 435 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----------~~~l~~~~~~~l~~~~d~d~----dg~i~~~ef~~~l~~ 435 (441)
..+++++|..+..++.-++|.++|..++..- -.++..+.+..+++.+..++ +|+++-+-|++++..
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 3567888888877777888888888888642 13456777888888887654 477888888877643
No 200
>KOG4578|consensus
Probab=85.78 E-value=0.94 Score=41.41 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCCCCcccHHHH---HHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 373 VVDAFKAADTTKSGTVPAKYL---KHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef---~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
+.--|...|.|.++.|...|+ +.++.+.. -.....+.+++-.|-|+|.+|+++|+..++...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 344599999999999999995 44554432 234567789999999999999999999988543
No 201
>KOG4347|consensus
Probab=84.29 E-value=1.6 Score=43.97 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHH
Q psy2947 351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDF 429 (441)
Q Consensus 351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef 429 (441)
|+++.|...+..+..-......+..+|+.+|.+++|.|++.+|+..+..+...-..+.+.-+++.+|.+++ ..+.+|-
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45555555555442222223456778999999999999999999999876544455667788888888877 6665543
No 202
>KOG1955|consensus
Probab=84.00 E-value=2.6 Score=40.89 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
...-|+.+..|-+|.|+-.--+.++. +....-+++.-+|+..|.|+||.++..||..+|.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFt---KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFT---KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhh---hccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 44557778888889887655444443 2344467889999999999999999999999986
No 203
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.52 E-value=0.98 Score=24.81 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=7.9
Q ss_pred CCCCEEEccCCCCCcc
Q psy2947 129 KNLTHLYLDNNLLDAL 144 (441)
Q Consensus 129 ~~L~~L~l~~n~l~~l 144 (441)
.+|+.|+|+.|+|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555433
No 204
>KOG1955|consensus
Probab=82.91 E-value=2.9 Score=40.53 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
+....-|+..-.|-.|.|+-.--+.++.+-. ++-+++..|+...|-|.||-++..||+.++
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 3444568888999999999999999998765 677899999999999999999999999877
No 205
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.88 E-value=9.7 Score=28.24 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHT 362 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~ 362 (441)
++.+.+|+.+ .|.+|.++...|..+++.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 4566666666 466677776666665554
No 206
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.51 E-value=18 Score=26.80 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-------CCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-------GEG----LSSKEVDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-------~~~----l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.++.+.+|+.+ .|.+|.++...|..+++++ |+. -.+..++..|... .....|+.++|++.|...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 35778899999 7899999999999988752 321 2566677888876 245679999999988643
No 207
>KOG1029|consensus
Probab=79.41 E-value=3 Score=42.84 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 398 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~ 398 (441)
.-+...+|...|+..+|+++-..=+.++... ......+..+|...|.|+||.++.+||.-+|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3457788889999999999877766655432 23345677889999999999999999987775
No 208
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=79.36 E-value=6 Score=32.02 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=21.4
Q ss_pred CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC
Q psy2947 348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT 382 (441)
Q Consensus 348 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~ 382 (441)
.+.|+++-|+.+|.........++-.+.+|..|-.
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 34788888888888776655555666777877743
No 209
>KOG4403|consensus
Probab=79.30 E-value=7.1 Score=37.26 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=55.9
Q ss_pred CCCcccHHHHHHHHHhhcC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947 310 KGGKLSFPDFLKVMHTHSK---AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386 (441)
Q Consensus 310 ~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 386 (441)
++...+..||+.+...-.. +....+.++.+.+.+|-|.+|.|+.+|=-.+++..+........-.+.|+- .|.
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~ 116 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDK 116 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Ccc
Confidence 3444555566554432111 223357788999999999999999999888887665444433333345533 467
Q ss_pred cccHHHHHHHHHH
Q psy2947 387 TVPAKYLKHVLVN 399 (441)
Q Consensus 387 ~is~~ef~~~l~~ 399 (441)
.||.+|+=.+|..
T Consensus 117 ~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 117 HITVEDLWEAWKE 129 (575)
T ss_pred ceeHHHHHHHHHh
Confidence 8999998777764
No 210
>KOG2243|consensus
Probab=78.67 E-value=3.1 Score=45.32 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
..|+.||+||.|.|+..+|..+|... ..-+..+++.+..-...|.+..++++||+..+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 34788999999999999999998754 2223456777888888999999999999988864
No 211
>KOG0035|consensus
Probab=77.57 E-value=9.1 Score=40.58 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChH-HHHHHH---HHhCCCCCCcccHHHHHHHHHHhCCCCC-HH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK-EVVDAF---KAADTTKSGTVPAKYLKHVLVNWGEGLS-SK 407 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~-~~~~~f---~~~D~~~~G~is~~ef~~~l~~~~~~l~-~~ 407 (441)
..++++.|+.+|....|.++.++|...+.........++ -+.+.| ...|.++-|.+++.+|.+.|..--..++ ..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 467899999999999999999999998877654443322 233333 4447777799999999999876433222 23
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 408 EVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 408 ~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
++-..|+.+-+++. .+..+|+++
T Consensus 826 r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHh
Confidence 34444555533332 567777666
No 212
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.12 E-value=11 Score=38.38 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCC-ChHHHHHHHHHhCC-CCCCcccHHHHHHHHH
Q psy2947 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED-IPKEVVDAFKAADT-TKSGTVPAKYLKHVLV 398 (441)
Q Consensus 333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~-~~~G~is~~ef~~~l~ 398 (441)
..++..+|..+.. ++.++.++|..++...++... ..+....+|+.+.. -+.+.++.+.|..+|.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3455666655542 245666666665555443322 23444455554421 1234455555555553
No 213
>PLN02228 Phosphoinositide phospholipase C
Probab=75.15 E-value=16 Score=37.13 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCC-ChHHHHHHHHHhCCC----CCCcccHHHHHHHHH
Q psy2947 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED-IPKEVVDAFKAADTT----KSGTVPAKYLKHVLV 398 (441)
Q Consensus 331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~~----~~G~is~~ef~~~l~ 398 (441)
.+..++..+|..+..+ +.++.++|..++...++... ..+.+..+|+.+... ..|.++.+.|..+|.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 3567778888777643 46888888877777655432 245566777776432 235677777777774
No 214
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.02 E-value=1.5 Score=23.30 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=6.2
Q ss_pred CCCcEEEccCCcCC
Q psy2947 104 TNLRVLCLTDNCLQ 117 (441)
Q Consensus 104 ~~L~~L~l~~n~l~ 117 (441)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 215
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.79 E-value=9.3 Score=30.91 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=25.0
Q ss_pred CCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC
Q psy2947 385 SGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVT 419 (441)
Q Consensus 385 ~G~is~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d 419 (441)
.+.|+++.|+.+|+. +...++++-++.+|..+-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 469999999999998 56679999999999998643
No 216
>PLN02230 phosphoinositide phospholipase C 4
Probab=72.61 E-value=19 Score=36.96 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=13.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q psy2947 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHS 364 (441)
Q Consensus 334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~ 364 (441)
.++..+|..|..++ +.++.++|..++...+
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 44555555543222 4455555555444443
No 217
>KOG4308|consensus
Probab=70.16 E-value=0.097 Score=52.06 Aligned_cols=156 Identities=18% Similarity=0.060 Sum_probs=91.7
Q ss_pred CCcccEEeccCCCcC--------cccCCC-CCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCC-CC--CCc
Q psy2947 60 FSHAFLLSLSYTPIG--------RRIFKC-DTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQ-NA--SIP 122 (441)
Q Consensus 60 l~~L~~l~l~~n~i~--------~~~~~l-~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~-~~--~~p 122 (441)
..+|..|+++.|.+. ..+... ..|++|++..+.++ .+...+.....++.++++.|.+. .| .++
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 567888888888554 122222 45677777777776 34555666788888888888773 11 122
Q ss_pred hhhh----cCCCCCEEEccCCCCCcc-----chhhcCCCC-CCEEEccCCcCccCccccccccccccccccc-chhHHH-
Q psy2947 123 FTLT----FCKNLTHLYLDNNLLDAL-----PGFLLSMPQ-LDTVYRHGNHNYFKSTFMWYHSDIHARIRST-STRDEV- 190 (441)
Q Consensus 123 ~~~~----~l~~L~~L~l~~n~l~~l-----p~~~~~l~~-L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l-~~~~~~- 190 (441)
..+. ...++++|.+++|.++.- -..+...++ +..|++..|.+.-.. + ..+...+... ..+..+
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g-~----~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVG-V----EKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHH-H----HHHHHHhcccchhhhhhh
Confidence 3333 466788888888887622 234555555 667888888852210 0 1111222222 222333
Q ss_pred Hhhcccc-----cCCchhhhhhhhcccccccccCC
Q psy2947 191 LRKQKKL-----HQPSRLQDLAVQSVIASKENFFE 220 (441)
Q Consensus 191 l~~~~~~-----~~p~~l~~l~~l~~l~l~~n~~~ 220 (441)
+..|.++ .+...+...+.++.+.++.|+..
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 5555442 23456677778888888888654
No 218
>KOG1265|consensus
Probab=69.71 E-value=38 Score=35.95 Aligned_cols=82 Identities=10% Similarity=0.276 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC---------CChHHHHHHHHHhCCCC
Q psy2947 314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE---------DIPKEVVDAFKAADTTK 384 (441)
Q Consensus 314 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~---------~~~~~~~~~f~~~D~~~ 384 (441)
.+++.|..++.+... ..++.++|+.+..++.-+++.++|..++...+... .....+..+++.+..+.
T Consensus 205 f~~e~f~~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 456666667766544 36789999999999989999999999887654322 22457888899986665
Q ss_pred ----CCcccHHHHHHHHHH
Q psy2947 385 ----SGTVPAKYLKHVLVN 399 (441)
Q Consensus 385 ----~G~is~~ef~~~l~~ 399 (441)
+|.|+.+-|...+..
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 699999999998865
No 219
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.47 E-value=4.1 Score=22.69 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=7.0
Q ss_pred CCCEEEccCCCCC
Q psy2947 130 NLTHLYLDNNLLD 142 (441)
Q Consensus 130 ~L~~L~l~~n~l~ 142 (441)
+|++|+|++|.|+
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 220
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=69.38 E-value=28 Score=28.86 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHhhcC--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947 311 GGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362 (441)
Q Consensus 311 ~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~ 362 (441)
...++-..|..+++.... ...+...+.-+|..+-..+...|++++|..++..
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 345666666666664432 1344556666666655555556666666665543
No 221
>KOG3763|consensus
Probab=69.25 E-value=2 Score=42.60 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=32.0
Q ss_pred CCCCcEEEccCCcCCCCCCch--hh-hcCCCCCEEEccCC--CCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947 103 LTNLRVLCLTDNCLQNASIPF--TL-TFCKNLTHLYLDNN--LLDALP--GFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~p~--~~-~~l~~L~~L~l~~n--~l~~lp--~~~~~l~~L~~L~l~~N~~ 164 (441)
.+.+..+.|++|++. .+.. ++ ...++|..|+|++| .+...+ ..++. ..|+.|.+.+|++
T Consensus 217 ~p~i~sl~lsnNrL~--~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY--HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPL 282 (585)
T ss_pred Ccceeeeecccchhh--chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcc
Confidence 345566667777665 3321 22 34567777777777 333222 12222 3467777777774
No 222
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=68.88 E-value=4.4 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.4
Q ss_pred cCCCCCccCCC-CccCCCC
Q psy2947 38 ACQRNCSLEVG-GICSHIW 55 (441)
Q Consensus 38 ~C~~~c~~~~~-~~c~~~~ 55 (441)
+||..|.|+.+ +.|+..+
T Consensus 1 ~CP~~C~C~~~~V~C~~~~ 19 (33)
T smart00013 1 ACPAPCNCSGTAVDCSGRG 19 (33)
T ss_pred CcCCCCEECCCEeEeCCCC
Confidence 49999999744 7787644
No 223
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=66.12 E-value=3.1 Score=23.25 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=13.8
Q ss_pred cCCCCCccCCC-CccCCCCC
Q psy2947 38 ACQRNCSLEVG-GICSHIWI 56 (441)
Q Consensus 38 ~C~~~c~~~~~-~~c~~~~~ 56 (441)
+||..|.|+.. +.|++.+.
T Consensus 1 ~CP~~C~C~~~~V~C~~~~L 20 (28)
T PF01462_consen 1 ACPRPCTCSGLTVDCSGRGL 20 (28)
T ss_dssp SSETTSEEETTEEEETTSS-
T ss_pred CcCCCCEecCCEeECCCCCC
Confidence 59999999744 77887553
No 224
>PLN02223 phosphoinositide phospholipase C
Probab=65.63 E-value=27 Score=35.21 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHHhCCC--------CCCceeHHHHHHHHhc
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVL---VNWG--EGLSSKEVDQIFREANVT--------MNSKVRYEDFVKIACA 435 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l---~~~~--~~l~~~~~~~l~~~~d~d--------~dg~i~~~ef~~~l~~ 435 (441)
.+.++++|..+ .++.|.++.+.+.+++ .... ...+.++++.++..+-.. ..+.++.+.|.++|..
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 35556666655 2455566666665555 3321 234445555555443211 1134666666666643
No 225
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=65.13 E-value=19 Score=25.28 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947 351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416 (441)
Q Consensus 351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~ 416 (441)
+++..+..++... ........+...|+.=+.+.|+.+||.+.++.+ +.|+.+..++..+
T Consensus 9 ~~F~~L~~~l~~~----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I---VGD~lL~s~I~~l 67 (70)
T PF12174_consen 9 MPFPMLFSALSKH----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI---VGDQLLRSAIKSL 67 (70)
T ss_pred ccHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4444444444433 122344445555555567788888888888764 1244455555443
No 226
>KOG0042|consensus
Probab=62.53 E-value=15 Score=36.69 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~ 400 (441)
.+..|+.+|.|..|.+...+..+.+.... ....++...+..+..|...+|.+..+||.+++...
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 45668899999999999999999998874 34456788889999999999999999999999874
No 227
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=62.38 E-value=25 Score=26.62 Aligned_cols=11 Identities=9% Similarity=0.319 Sum_probs=5.1
Q ss_pred ccHHHHHHHHH
Q psy2947 351 LSFPDFLKVMH 361 (441)
Q Consensus 351 i~~~ef~~~~~ 361 (441)
.+..+|...+.
T Consensus 54 ~~~~~~~~~~~ 64 (104)
T cd07313 54 PDLYEFTSLIK 64 (104)
T ss_pred CCHHHHHHHHH
Confidence 44445544443
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=61.14 E-value=41 Score=34.36 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=41.4
Q ss_pred CcCHHHHHHHHHh--CCCcccHHHHHHHHHhhcCCC-CCHHHHHHHHHhhcCC----CCCcccHHHHHHHH
Q psy2947 297 SPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTT----KSGKLSFPDFLKVM 360 (441)
Q Consensus 297 ~~~~~~~~~~~~~--~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~d----~~g~i~~~ef~~~~ 360 (441)
.+.+.++..++.. +++.++.++|..++....+.. ...+.+..+|..|... ..|.++.+.|..++
T Consensus 20 ~~~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 20 REPPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3456777777753 346788888888887776543 4456677777777543 23556777766554
No 229
>KOG0039|consensus
Probab=61.12 E-value=18 Score=37.85 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy2947 330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360 (441)
Q Consensus 330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~ 360 (441)
...+..++-.|..+|. ++|.++.+++..++
T Consensus 14 ~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~ 43 (646)
T KOG0039|consen 14 CSYDDKLQTFFDMYDK-GDGKLTEEEVRELI 43 (646)
T ss_pred CChhHHHHHHHHHHhh-hcCCccHHHHHHHH
Confidence 3344444555555554 44444444444433
No 230
>KOG3449|consensus
Probab=61.07 E-value=45 Score=25.50 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=45.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 375 ~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
..|-.++..++-..+..+++.++..+|....++.++.+++.+ .|+ +.+|.+..-.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~G~ 59 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAAGR 59 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHHhH
Confidence 456666777888899999999999999999999999999999 355 7788776543
No 231
>KOG4308|consensus
Probab=60.38 E-value=0.24 Score=49.36 Aligned_cols=131 Identities=21% Similarity=0.183 Sum_probs=79.6
Q ss_pred CcccEEeccCC--------CcCcccCCCCCCCEEEccCCCCC-----cCCcCcc----CCCCCcEEEccCCcCCCC---C
Q psy2947 61 SHAFLLSLSYT--------PIGRRIFKCDTVEVLSLKSNSLT-----SLPPDIG----RLTNLRVLCLTDNCLQNA---S 120 (441)
Q Consensus 61 ~~L~~l~l~~n--------~i~~~~~~l~~L~~L~l~~n~l~-----~lp~~~~----~l~~L~~L~l~~n~l~~~---~ 120 (441)
..++.|.+..| .+...+....+++.++++.|.+. .++..+. ...++++|.+++|.++.- .
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 44555666655 34456667788899999988874 2333343 478889999999887510 0
Q ss_pred CchhhhcCCC-CCEEEccCCCCCcc-----chhhcCC-CCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hh
Q psy2947 121 IPFTLTFCKN-LTHLYLDNNLLDAL-----PGFLLSM-PQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LR 192 (441)
Q Consensus 121 ~p~~~~~l~~-L~~L~l~~n~l~~l-----p~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~ 192 (441)
+-..+...+. +..|++..|.++.. ...+..+ ..++.++++.|.+..... ..+...+.....+..+ +.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~-----~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV-----RDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch-----HHHHHHHhhhHHHHHhhcc
Confidence 1122344445 66688889988633 3445555 678889999998644332 2233344444444444 55
Q ss_pred hccc
Q psy2947 193 KQKK 196 (441)
Q Consensus 193 ~~~~ 196 (441)
+|.+
T Consensus 299 ~n~l 302 (478)
T KOG4308|consen 299 NNPL 302 (478)
T ss_pred cCcc
Confidence 5554
No 232
>KOG1947|consensus
Probab=59.92 E-value=4 Score=40.71 Aligned_cols=104 Identities=27% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCcccEEeccCC-CcC-----cccCCCCCCCEEEccCC--CCCcCC----cCccCCCCCcEEEccCCc-CCCCCCchhh-
Q psy2947 60 FSHAFLLSLSYT-PIG-----RRIFKCDTVEVLSLKSN--SLTSLP----PDIGRLTNLRVLCLTDNC-LQNASIPFTL- 125 (441)
Q Consensus 60 l~~L~~l~l~~n-~i~-----~~~~~l~~L~~L~l~~n--~l~~lp----~~~~~l~~L~~L~l~~n~-l~~~~~p~~~- 125 (441)
.++|+.+.+..+ .+. .....++.|+.|+++++ .+...+ .....+.+|+.|++++.. ++ ...=..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHHH
Confidence 455666666555 222 23345678888888763 222111 224445778888888776 44 1111122
Q ss_pred hcCCCCCEEEccCCC-CCc--cchhhcCCCCCCEEEccCCcC
Q psy2947 126 TFCKNLTHLYLDNNL-LDA--LPGFLLSMPQLDTVYRHGNHN 164 (441)
Q Consensus 126 ~~l~~L~~L~l~~n~-l~~--lp~~~~~l~~L~~L~l~~N~~ 164 (441)
..+++|+.|.+..+. ++. +-.....+++|+.|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 236788888866665 432 223345677788888887764
No 233
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=59.16 E-value=59 Score=24.84 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred HhhcCCCCCcccHHHHHHHHHhh
Q psy2947 341 KAADTTKSGKLSFPDFLKVMHTH 363 (441)
Q Consensus 341 ~~~D~d~~g~i~~~ef~~~~~~~ 363 (441)
+.||+..+.+|+.+++.+++..-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g 32 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREG 32 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCC
Confidence 46899999999999999988753
No 234
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=57.53 E-value=15 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q psy2947 313 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365 (441)
Q Consensus 313 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~ 365 (441)
-++|..+..++... .+...+..+...|+.=..+.|+.+||.+.++...+
T Consensus 8 ~~~F~~L~~~l~~~----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 8 WMPFPMLFSALSKH----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred cccHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35566666666655 33455666666676667789999999998887754
No 235
>KOG0998|consensus
Probab=55.57 E-value=5 Score=43.15 Aligned_cols=60 Identities=13% Similarity=0.356 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
....+|...|.+.+|.|+..+.+..+...| ++...++.+....|.+..|++++++|.-.|
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 455578888888888888888888877655 666777777778887778888888776555
No 236
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=55.38 E-value=57 Score=26.01 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhhcCCC--CCcccHHHHHHHHHhhc-------cCCCC-h---------HHHHHHHHHhCCCCCCcccHHH
Q psy2947 332 IPKEVVDAFKAADTTK--SGKLSFPDFLKVMHTHS-------KAEDI-P---------KEVVDAFKAADTTKSGTVPAKY 392 (441)
Q Consensus 332 ~~~~~~~~f~~~D~d~--~g~i~~~ef~~~~~~~~-------~~~~~-~---------~~~~~~f~~~D~~~~G~is~~e 392 (441)
+-..+.++|+.+..++ +..++..|....+.... ..... + --+..++..||++++|.|+.-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 3445566666665544 35678888777665432 11000 0 1233457788888888888888
Q ss_pred HHHHHHH
Q psy2947 393 LKHVLVN 399 (441)
Q Consensus 393 f~~~l~~ 399 (441)
|+.++..
T Consensus 119 ~KvaL~~ 125 (127)
T PF09068_consen 119 FKVALIT 125 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877643
No 237
>KOG3763|consensus
Probab=55.02 E-value=6.9 Score=39.01 Aligned_cols=61 Identities=28% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCCCCCEEEccCCCCCcCCcC---ccCCCCCcEEEccCC--cCCCCCCchhhh--cCCCCCEEEccCCCCC
Q psy2947 79 KCDTVEVLSLKSNSLTSLPPD---IGRLTNLRVLCLTDN--CLQNASIPFTLT--FCKNLTHLYLDNNLLD 142 (441)
Q Consensus 79 ~l~~L~~L~l~~n~l~~lp~~---~~~l~~L~~L~l~~n--~l~~~~~p~~~~--~l~~L~~L~l~~n~l~ 142 (441)
+.+.+..++|++|++..+..- -...++|..|+|++| .+. .. ..+. +...|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--ch-hhhhhhcCCCHHHeeecCCccc
Confidence 456788899999988855321 223578999999999 443 22 2333 2345789999999984
No 238
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=54.44 E-value=40 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947 391 KYLKHVLVNWGEGLSSKEVDQIFREA 416 (441)
Q Consensus 391 ~ef~~~l~~~~~~l~~~~~~~l~~~~ 416 (441)
+++..+++..|..++..++.+++++-
T Consensus 17 ~~m~~if~l~~~~vs~~el~a~lrke 42 (68)
T PF07308_consen 17 DDMIEIFALAGFEVSKAELSAWLRKE 42 (68)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHCCC
Confidence 34444444445555555555555543
No 239
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=52.94 E-value=68 Score=23.45 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 386 G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
-.|.+.+|++.+.....-....+..++=..+|--.++.||.=||--
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdv 66 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDV 66 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHH
Confidence 4577777777777654333344555666666666677777666643
No 240
>PLN02222 phosphoinositide phospholipase C 2
Probab=52.60 E-value=54 Score=33.63 Aligned_cols=64 Identities=13% Similarity=0.261 Sum_probs=44.7
Q ss_pred CHHHHHHHHHh--CCCcccHHHHHHHHHhhcCC-CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHHHh
Q psy2947 299 TIAELKKYLAE--KGGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADT-TKSGKLSFPDFLKVMHT 362 (441)
Q Consensus 299 ~~~~~~~~~~~--~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~-d~~g~i~~~ef~~~~~~ 362 (441)
.+.++..++.. .++.++.++|..++...... ..+.+.+..+|..+.. ...+.++++.|..++..
T Consensus 23 ~~~ei~~if~~~~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcCCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45577777753 35788999998888877665 3456777778777642 23566888888887753
No 241
>KOG0039|consensus
Probab=52.03 E-value=29 Score=36.33 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--------CCCCCHHHHHHHHHHhCCC
Q psy2947 348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW--------GEGLSSKEVDQIFREANVT 419 (441)
Q Consensus 348 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~--------~~~l~~~~~~~l~~~~d~d 419 (441)
+| |+++||. ......+..++.+|..+|. ++|.++.+|+..++... ....+.+....++.+.|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 6777776 1233346677778888876 78888888877776531 1234555566777777777
Q ss_pred CCCceeHHHHHHHH
Q psy2947 420 MNSKVRYEDFVKIA 433 (441)
Q Consensus 420 ~dg~i~~~ef~~~l 433 (441)
..|.+.++++.-.+
T Consensus 74 ~~~y~~~~~~~~ll 87 (646)
T KOG0039|consen 74 HKGYITNEDLEILL 87 (646)
T ss_pred ccceeeecchhHHH
Confidence 77777666655444
No 242
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=51.81 E-value=14 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.563 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 404 LSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 404 l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
++|++.+.+..++.-|..|.+.|.||+.-..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6889999999999999999999999997653
No 243
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=51.46 E-value=43 Score=25.29 Aligned_cols=79 Identities=6% Similarity=0.006 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcee
Q psy2947 348 SGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVR 425 (441)
Q Consensus 348 ~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l~~~~d~d~dg~i~ 425 (441)
||.++..|...+-..+.. .....++...++..+........+..+|.+.+.... ......-++.++..... ||.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCC
Confidence 355555555443332211 122244555566666555566677888888876532 11222335556666644 45565
Q ss_pred HHH
Q psy2947 426 YED 428 (441)
Q Consensus 426 ~~e 428 (441)
-.|
T Consensus 91 ~~E 93 (104)
T cd07313 91 EYE 93 (104)
T ss_pred HHH
Confidence 554
No 244
>KOG3864|consensus
Probab=49.65 E-value=3.8 Score=35.37 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=10.2
Q ss_pred CCCCCEEEccCCcCcc
Q psy2947 151 MPQLDTVYRHGNHNYF 166 (441)
Q Consensus 151 l~~L~~L~l~~N~~~~ 166 (441)
.++|+.|++++|+-.+
T Consensus 150 ~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRIT 165 (221)
T ss_pred ccchheeeccCCCeec
Confidence 3667777777776433
No 245
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=49.40 E-value=28 Score=18.00 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=5.6
Q ss_pred CCCCCcccHHHH
Q psy2947 382 TTKSGTVPAKYL 393 (441)
Q Consensus 382 ~~~~G~is~~ef 393 (441)
.++||.|+.-++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 344444444444
No 246
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=47.62 E-value=40 Score=24.62 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.3
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 417 (441)
Q Consensus 386 G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d 417 (441)
..||.+||.++.+..+.+++.++++.++.-+-
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 35889999999999999999999988888773
No 247
>KOG2871|consensus
Probab=46.79 E-value=19 Score=33.96 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 397 (441)
Q Consensus 331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l 397 (441)
...++++++|+.+|+.++|+|+-+-+..+|.....--...+.+-.+=+..|+..-|.|-.++|-..+
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 3457788888888888888888777777777653222223344444455677777777666654443
No 248
>PLN02230 phosphoinositide phospholipase C 4
Probab=46.20 E-value=88 Score=32.25 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=16.9
Q ss_pred CHHHHHHHHH---hCCCcccHHHHHHHHHhhc
Q psy2947 299 TIAELKKYLA---EKGGKLSFPDFLKVMHTHS 327 (441)
Q Consensus 299 ~~~~~~~~~~---~~~g~i~~~ef~~~~~~~~ 327 (441)
.+.++..++. ++++.++.++|..++....
T Consensus 27 p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGDAHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCCCccCHHHHHHHHHHhC
Confidence 4455555554 2345677777777776554
No 249
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=45.34 E-value=13 Score=25.27 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=26.5
Q ss_pred HhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947 341 KAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 397 (441)
Q Consensus 341 ~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l 397 (441)
+.||+..+.+|+.+++.+++..- .-|+..|.....-||..=+.+++
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g-----------~~~~V~D~ktgeDiT~~iL~QIi 55 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREG-----------EDFKVVDAKTGEDITRSILLQII 55 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCC-----------CeEEEEECCCCcccHHHHHHHHH
Confidence 35777777778877777776643 13455554444445544444443
No 250
>KOG1947|consensus
Probab=45.34 E-value=6.3 Score=39.29 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=63.4
Q ss_pred CCCcccEEeccCC-----Cc----CcccCCCCCCCEEEccCCC-CCcCC-cCcc-CCCCCcEEEccCCc-CCCCCCchhh
Q psy2947 59 YFSHAFLLSLSYT-----PI----GRRIFKCDTVEVLSLKSNS-LTSLP-PDIG-RLTNLRVLCLTDNC-LQNASIPFTL 125 (441)
Q Consensus 59 ~l~~L~~l~l~~n-----~i----~~~~~~l~~L~~L~l~~n~-l~~lp-~~~~-~l~~L~~L~l~~n~-l~~~~~p~~~ 125 (441)
..++|+.|+++++ .. ......+++|+.|++++.. ++..- ..+. .+++|+.|.+.++. ++...+-...
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 4678999999862 11 1223356889999999887 55221 1122 36799999977666 4411222223
Q ss_pred hcCCCCCEEEccCCCCC---ccchhhcCCCCCCEEEccC
Q psy2947 126 TFCKNLTHLYLDNNLLD---ALPGFLLSMPQLDTVYRHG 161 (441)
Q Consensus 126 ~~l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~l~~ 161 (441)
..+++|++|+++++... .+.....++++|+.|.+..
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 67788999999987552 2333344567666655433
No 251
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=43.99 E-value=94 Score=23.39 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=8.7
Q ss_pred HHHHHHHhCCCCCCcccHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYL 393 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef 393 (441)
+..+|...-. ||.++..|-
T Consensus 77 l~~l~~vA~A--DG~~~~~E~ 95 (106)
T cd07316 77 LEFLFQIAYA--DGELSEAER 95 (106)
T ss_pred HHHHHHHHHH--cCCCCHHHH
Confidence 3444444432 455555553
No 252
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=43.89 E-value=75 Score=20.13 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947 390 AKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP 436 (441)
Q Consensus 390 ~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~ 436 (441)
.+|...++..+| .+..+++.+++.+.. ...++.++.++...+.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQALKL 45 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHHHCC
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHHHhh
Confidence 367788888888 788889888888864 3446788887765543
No 253
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.76 E-value=15 Score=44.10 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=21.3
Q ss_pred EccCCCCCcCCcC-ccCCCCCcEEEccCCcCC
Q psy2947 87 SLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQ 117 (441)
Q Consensus 87 ~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~ 117 (441)
||++|+|+.||.. |..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4667777777666 666777777777777654
No 254
>KOG4403|consensus
Probab=43.04 E-value=36 Score=32.75 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCCcccHHHHHHHHHhhccC---CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 346 TKSGKLSFPDFLKVMHTHSKA---EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 346 d~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
.|+...+..||.++....... ....+.++.+-+..|.|.+|.|+.+|--.+|++
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 455566677776544433221 222467888889999999999999999999986
No 255
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=42.10 E-value=34 Score=23.97 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy2947 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361 (441)
Q Consensus 331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~ 361 (441)
.+.+++...|+.+ .++.++|+.+|+++.+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 4568899999999 67889999999998764
No 256
>KOG2871|consensus
Probab=41.51 E-value=30 Score=32.65 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHHhCCCCCCceeHHHHHH
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE-VDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~-~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
.+.++..|+.+|+.++|+|+.+-++.+|...+..+++.. +..+=..+|..+-|.|-.++|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 578999999999999999999999999999885555433 44444445555556565555543
No 257
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=39.90 E-value=1e+02 Score=23.24 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC---CCCCCcccHHHHHHHHHHh
Q psy2947 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD---TTKSGTVPAKYLKHVLVNW 400 (441)
Q Consensus 340 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D---~~~~G~is~~ef~~~l~~~ 400 (441)
|..+.. +|.+..++|-+.+... ...+-..++|...- .-....|+.+|++.++..+
T Consensus 36 Fd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 36 FDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 444444 6677777776655422 22333344443331 1124677777777777653
No 258
>KOG1954|consensus
Probab=39.59 E-value=39 Score=32.23 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947 373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431 (441)
Q Consensus 373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~ 431 (441)
..++|.... --+|+|+-..-+..|.. ..+++..+-.+.+..|.|.||.++-+||.-
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 445666553 34788888877777754 348889999999999999999999999963
No 259
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=38.59 E-value=2.2e+02 Score=23.30 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=21.2
Q ss_pred HHHHhCCCCCHHHHHHHHH----------HhCCCCCCceeHHHHHHHH
Q psy2947 396 VLVNWGEGLSSKEVDQIFR----------EANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 396 ~l~~~~~~l~~~~~~~l~~----------~~d~d~dg~i~~~ef~~~l 433 (441)
-..++|..++++++..++. .+-.+..|..+...|.+++
T Consensus 98 e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 98 EFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 3344555555555555551 1113567888887776653
No 260
>KOG3864|consensus
Probab=38.07 E-value=16 Score=31.63 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred CcCcccCCCCCCCEEEccCCCCCcCC-cCccCCCCCcEEEccCCcCCCCCC-chhh-hcCCCCCEEEccCC-CCCccc-h
Q psy2947 72 PIGRRIFKCDTVEVLSLKSNSLTSLP-PDIGRLTNLRVLCLTDNCLQNASI-PFTL-TFCKNLTHLYLDNN-LLDALP-G 146 (441)
Q Consensus 72 ~i~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~-p~~~-~~l~~L~~L~l~~n-~l~~lp-~ 146 (441)
..|.....-..++.++-++..|.... ..+..++.++.|.+.++.-- +.. -..+ +-.++|+.|++++| +|+.-- .
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~-dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF-DDWCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccch-hhHHHHHhcccccchheeeccCCCeechhHHH
Confidence 44433222345778888888877332 23667777777777766422 000 0012 23478999999977 566443 4
Q ss_pred hhcCCCCCCEEEccCCc
Q psy2947 147 FLLSMPQLDTVYRHGNH 163 (441)
Q Consensus 147 ~~~~l~~L~~L~l~~N~ 163 (441)
.+..+++|+.|.+.+=+
T Consensus 171 ~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHhhhhHHHHhcCch
Confidence 56677888887775544
No 261
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=37.57 E-value=26 Score=28.25 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=30.5
Q ss_pred hCCCcccHHHHHHHHHhhcC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947 309 EKGGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387 (441)
Q Consensus 309 ~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 387 (441)
..||.++.+|...+...... ...+......++..++.-....++..++...+...........-++.++.....| |.
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC
Confidence 34555555555444332211 1112233333333333332234455555444433211011112345556666554 44
Q ss_pred ccHHH
Q psy2947 388 VPAKY 392 (441)
Q Consensus 388 is~~e 392 (441)
++..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 44443
No 262
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=36.84 E-value=3.3e+02 Score=24.89 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=8.3
Q ss_pred HHHHHHhCCCCCCcccHHH
Q psy2947 374 VDAFKAADTTKSGTVPAKY 392 (441)
Q Consensus 374 ~~~f~~~D~~~~G~is~~e 392 (441)
+.+|+..= -||.++..|
T Consensus 134 ~~l~~vA~--ADG~l~~~E 150 (267)
T PRK09430 134 EIQIQAAF--ADGSLHPNE 150 (267)
T ss_pred HHHHHHHH--hcCCCCHHH
Confidence 33444442 235666666
No 263
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.71 E-value=1.2e+02 Score=24.53 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=30.0
Q ss_pred CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 347 KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 347 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
+...+++..|...+..........+-+..+++..- .||.++.-|-.-+++.
T Consensus 79 ~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweIa~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 79 GYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEIAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--ccccccHHHHHHHHHH
Confidence 34457777777777654333332345566666663 4677777776666554
No 264
>KOG1264|consensus
Probab=36.40 E-value=99 Score=32.75 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=11.1
Q ss_pred CceeHHHHHHHHhccCC
Q psy2947 422 SKVRYEDFVKIACAPVP 438 (441)
Q Consensus 422 g~i~~~ef~~~l~~~~~ 438 (441)
-.+.++||+.++...-+
T Consensus 280 Pyl~v~EFv~fLFSreN 296 (1267)
T KOG1264|consen 280 PYLFVDEFVTFLFSREN 296 (1267)
T ss_pred cceeHHHHHHHHhhccc
Confidence 35777788887755433
No 265
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=35.21 E-value=1.2e+02 Score=22.96 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---CCCCceeHHHHHHH
Q psy2947 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV---TMNSKVRYEDFVKI 432 (441)
Q Consensus 371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~---d~dg~i~~~ef~~~ 432 (441)
..++.-|..+-. ||.+..++|-+.+ |..-+.+=+.++|..+-. -....|+.+|+..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~ef 89 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEF 89 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHH
Confidence 456677888765 9999999998877 543345555566655531 12457999987765
No 266
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=35.13 E-value=70 Score=20.04 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHHHh-CCCC-CCcccHHHHHHHHHH
Q psy2947 373 VVDAFKAA-DTTK-SGTVPAKYLKHVLVN 399 (441)
Q Consensus 373 ~~~~f~~~-D~~~-~G~is~~ef~~~l~~ 399 (441)
+..+|+.| ..+| ...++..||+.++..
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 44556655 2333 567788888777765
No 267
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=34.30 E-value=1.7e+02 Score=21.99 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHhCCCCC----HHHHHHHHHHhCCCCCCceeHHH
Q psy2947 388 VPAKYLKHVLVNWGEGLS----SKEVDQIFREANVTMNSKVRYED 428 (441)
Q Consensus 388 is~~ef~~~l~~~~~~l~----~~~~~~l~~~~d~d~dg~i~~~e 428 (441)
.+..++.+.+...- ..+ ..-+..++...-. ||.++-.|
T Consensus 53 ~~~~~~~~~l~~~~-~~~~~~r~~~l~~l~~vA~A--DG~~~~~E 94 (106)
T cd07316 53 FGLEEYARQFRRAC-GGRPELLLQLLEFLFQIAYA--DGELSEAE 94 (106)
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH--cCCCCHHH
Confidence 56677777766531 122 2334555555544 46666554
No 268
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=32.71 E-value=83 Score=30.04 Aligned_cols=44 Identities=11% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433 (441)
Q Consensus 384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l 433 (441)
..|.||+||-...++......+++.++.+++.++ |+-+||.+.|
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 3688999998888888655666788888888885 7778887765
No 269
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=32.45 E-value=2e+02 Score=21.07 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q psy2947 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH 363 (441)
Q Consensus 310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~ 363 (441)
+=..+|.+|+.+..+++... .+.+.++.+...+-.+.-.-.+-++-..++..+
T Consensus 11 Kln~iT~~eLlkyskqy~i~-it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 11 KLNNITAKELLKYSKQYNIS-ITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred HHhcCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 33457777777777766433 445555555555544444444455544444443
No 270
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=31.66 E-value=46 Score=24.10 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=15.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 417 (441)
Q Consensus 385 ~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d 417 (441)
.|+||++|+..++.... ++.+++..++..+.
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 56677777666665433 55566666666554
No 271
>KOG4341|consensus
Probab=31.56 E-value=24 Score=34.17 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=50.7
Q ss_pred CCcccEEeccCC-CcCc-----ccCCCCCCCEEEccCCC-CCcCC--cCccCCCCCcEEEccCCcCC-CCCCchhhhcCC
Q psy2947 60 FSHAFLLSLSYT-PIGR-----RIFKCDTVEVLSLKSNS-LTSLP--PDIGRLTNLRVLCLTDNCLQ-NASIPFTLTFCK 129 (441)
Q Consensus 60 l~~L~~l~l~~n-~i~~-----~~~~l~~L~~L~l~~n~-l~~lp--~~~~~l~~L~~L~l~~n~l~-~~~~p~~~~~l~ 129 (441)
...|+.|+.++. .++. -..+..+|+.|-++.++ ++..- .-=.+...|+.|++...... .+++-+--.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 455566666655 3331 12245677777776654 22110 00123455666666655432 011111113456
Q ss_pred CCCEEEccCCCC-Ccc-----chhhcCCCCCCEEEccCCcCcc
Q psy2947 130 NLTHLYLDNNLL-DAL-----PGFLLSMPQLDTVYRHGNHNYF 166 (441)
Q Consensus 130 ~L~~L~l~~n~l-~~l-----p~~~~~l~~L~~L~l~~N~~~~ 166 (441)
.|+.|.++++.+ +.- ...-..+..|+.+.|++++...
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 677776665533 211 1222345566677777776533
No 272
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=31.16 E-value=1.9e+02 Score=20.39 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred ccHHHH
Q psy2947 314 LSFPDF 319 (441)
Q Consensus 314 i~~~ef 319 (441)
|+..|.
T Consensus 29 Vs~~EI 34 (71)
T PF04282_consen 29 VSASEI 34 (71)
T ss_pred CCHHHH
Confidence 333333
No 273
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=30.26 E-value=1.2e+02 Score=23.20 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=31.4
Q ss_pred HhCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCCCCCCceeH
Q psy2947 379 AADTTKSGTVPAKYLKHVLVNW----------GEGLSSKEVDQIFREANVTMNSKVRY 426 (441)
Q Consensus 379 ~~D~~~~G~is~~ef~~~l~~~----------~~~l~~~~~~~l~~~~d~d~dg~i~~ 426 (441)
.+|+..+-+||.++++++.+.- |..++...+-.++-+....+...++.
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~ 68 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLST 68 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCH
Confidence 4688888999999998888741 44555555555555554445444444
No 274
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=29.98 E-value=2.6e+02 Score=22.46 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCcccHHHHHHHHHhhcCCCC--C-HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHH
Q psy2947 310 KGGKLSFPDFLKVMHTHSKAED--I-PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 378 (441)
Q Consensus 310 ~~g~i~~~ef~~~~~~~~~~~~--~-~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 378 (441)
+....+.++|..-+....+... + +.....+|+..+. .|+..|+.++...+ ..+++++|.
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r----~Is~gei~~v~s~L------p~~~~elw~ 133 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR----HISPGEIDKVRSRL------PKEIRELWE 133 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHC------cHHHHHhcc
Confidence 4567889999888776655422 2 3444588888874 48888888877766 456666663
No 275
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=29.48 E-value=4.3e+02 Score=26.42 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=47.0
Q ss_pred chHHHHHhhhccccC-CCccCHHHHHHHHHH---cCCCcC------------HHHHHHHHHhCCCcccHHHHHHHHHhhc
Q psy2947 264 PYLEFRECFFLFARN-GTIKTLDELSVIMRS---LGMSPT------------IAELKKYLAEKGGKLSFPDFLKVMHTHS 327 (441)
Q Consensus 264 ~~~~l~~~f~~~d~~-G~i~~~~el~~~~~~---~~~~~~------------~~~~~~~~~~~~g~i~~~ef~~~~~~~~ 327 (441)
+.+.++|+|+.-|.. ..+ +.+.|++++.. .+..+. +.+++++....+++|.-++|++......
T Consensus 366 ~nDA~RELYrYSdyLPK~L-~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass~m 444 (624)
T PF05819_consen 366 ENDAMRELYRYSDYLPKNL-SLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASSSM 444 (624)
T ss_pred hhHHHHHHHHhhhcccccc-CHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHhhc
Confidence 345566666554443 334 55666665542 122221 1122223233567889999988877544
Q ss_pred CCCCCHHHHHHHHHhh-c-CCCCC-cccHHHHHHHHHh
Q psy2947 328 KAEDIPKEVVDAFKAA-D-TTKSG-KLSFPDFLKVMHT 362 (441)
Q Consensus 328 ~~~~~~~~~~~~f~~~-D-~d~~g-~i~~~ef~~~~~~ 362 (441)
.-...+......+... | .=++| .|+++-+..+...
T Consensus 445 ~LT~~ElkTL~Tin~nqd~FFg~G~~ltrdKLa~ma~D 482 (624)
T PF05819_consen 445 HLTAPELKTLDTINSNQDAFFGDGKELTRDKLASMADD 482 (624)
T ss_pred ccChHHHHHHHHhhhchhhhhCCccccCHHHHHHhhcC
Confidence 3322222211111110 0 11566 7787777665543
No 276
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.97 E-value=2.7e+02 Score=22.68 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCcccHHHH---HHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 338 DAFKAADTTKSGKLSFPDF---LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 338 ~~f~~~D~d~~g~i~~~ef---~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
-+|+.++-| |.++..|. +++++... ....+.+.++......-+.-.+++..|...|+.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f--~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENF--GIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 457776655 45554443 44444432 223456667766666666677777778777764
No 277
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.92 E-value=1.7e+02 Score=25.07 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=6.6
Q ss_pred CCcccHHHHHHHHH
Q psy2947 311 GGKLSFPDFLKVMH 324 (441)
Q Consensus 311 ~g~i~~~ef~~~~~ 324 (441)
||+|+.+++...+.
T Consensus 11 DGTITl~Ds~~~it 24 (220)
T COG4359 11 DGTITLNDSNDYIT 24 (220)
T ss_pred CCceEecchhHHHH
Confidence 44444444444443
No 278
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.64 E-value=17 Score=20.57 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=11.9
Q ss_pred HHHHHHhCCCCCCceeHH
Q psy2947 410 DQIFREANVTMNSKVRYE 427 (441)
Q Consensus 410 ~~l~~~~d~d~dg~i~~~ 427 (441)
+.++.+-|.|+|-+|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 345666677777777765
No 279
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=27.65 E-value=92 Score=29.10 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=49.5
Q ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHhh--cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh-----CCCCCCc
Q psy2947 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAA--DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA-----DTTKSGT 387 (441)
Q Consensus 315 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~--D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~-----D~~~~G~ 387 (441)
+|++..+++.........++++.++...| |.|..-.+--+||.+.+..+ +.+.+..|-.| -..=+|.
T Consensus 22 DF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l------~~~~r~~FidFLerSctaEFSGf 95 (357)
T PLN02508 22 DFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI------QGPLRQIFIEFLERSCTAEFSGF 95 (357)
T ss_pred cHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhC------CHHHHHHHHHHHHhhhhhhcccc
Confidence 44444444433333344556677766665 44444455556665544433 23344444322 3344677
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q psy2947 388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTM 420 (441)
Q Consensus 388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~ 420 (441)
+=+.|+.+-++.- +-++.++|.-+..|.
T Consensus 96 lLYKEl~rrlk~~-----nP~lae~F~lMaRDE 123 (357)
T PLN02508 96 LLYKELGRRLKKT-----NPVVAEIFTLMSRDE 123 (357)
T ss_pred hHHHHHHHhcccC-----ChHHHHHHHHhCchh
Confidence 7777776666442 244666777766553
No 280
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.87 E-value=2.8e+02 Score=20.84 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 413 (441)
Q Consensus 370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~ 413 (441)
.+.+.+++..+-......-|...+.++|+.++.....+.++..+
T Consensus 47 ~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 47 REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 44555565555322223556777788888777666666665443
No 281
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.46 E-value=1.5e+02 Score=20.35 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416 (441)
Q Consensus 385 ~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~ 416 (441)
+--|+.+-++.++..+|...++.+++.+.+.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688888888888889888888888888765
No 282
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=25.96 E-value=3.2e+02 Score=21.30 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy2947 376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432 (441)
Q Consensus 376 ~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~ 432 (441)
.+-..-..++..+|.+++++++...|..+....+..+++.+. | .+.+|++..
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~----G-KdI~ELIa~ 59 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE----G-KTPHELIAA 59 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHH
Confidence 334444566778999999999999999999999999999883 2 477777764
No 283
>PHA02105 hypothetical protein
Probab=25.73 E-value=1.4e+02 Score=19.87 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCC--CCceeHHHHHHHH
Q psy2947 387 TVPAKYLKHVLVNWG---EGLSSKEVDQIFREANVTM--NSKVRYEDFVKIA 433 (441)
Q Consensus 387 ~is~~ef~~~l~~~~---~~l~~~~~~~l~~~~d~d~--dg~i~~~ef~~~l 433 (441)
+++.+||+.++..-. .++..+.+..+-..+.... =-.++|+||...|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 356677777765422 3555555555544443322 1247888887765
No 284
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=25.63 E-value=81 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=6.6
Q ss_pred CCcccHHHHHHHH
Q psy2947 348 SGKLSFPDFLKVM 360 (441)
Q Consensus 348 ~g~i~~~ef~~~~ 360 (441)
.|.+.-+||..++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4555555555444
No 285
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=25.49 E-value=86 Score=20.62 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=20.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 414 (441)
Q Consensus 384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~ 414 (441)
.+|.|+.+||..-+..+-..-+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 4688888888777766544455566666554
No 286
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=24.93 E-value=1.3e+02 Score=24.46 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHHhCCCCCC-ceeHHHHHHH
Q psy2947 384 KSGTVPAKYLKHVLVNWG---------EGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 432 (441)
Q Consensus 384 ~~G~is~~ef~~~l~~~~---------~~l~~~~~~~l~~~~d~d~dg-~i~~~ef~~~ 432 (441)
||-.||.+||.+....-. ..+..++++.+.+.+..-+.+ .++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 455667777766665421 224666677766666654433 3777766554
No 287
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=23.85 E-value=47 Score=26.68 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=41.7
Q ss_pred CCCcccHHHHHHHHHhhc-cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHHhCCCCC
Q psy2947 347 KSGKLSFPDFLKVMHTHS-KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----VDQIFREANVTMN 421 (441)
Q Consensus 347 ~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~----~~~l~~~~d~d~d 421 (441)
-||.|+.+|...+..... ...........++..++.-.....+.+++. +.+...++.++ ++.++.....||+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~r~~ll~~l~~ia~ADG~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELL---RELRDSLSPEEREDLLRMLIAIAYADGE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHH---HHHCTS--HHHHHHHHHHHHHHCTCTTC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHH---HHHHHhhchHHHHHHHHHHHHHHhcCCC
Confidence 368898888776555441 122224455666666654444445555554 44444444444 4455666655554
Q ss_pred CceeHHHHHHHHh
Q psy2947 422 SKVRYEDFVKIAC 434 (441)
Q Consensus 422 g~i~~~ef~~~l~ 434 (441)
-.-.-.+|++-+.
T Consensus 113 ~~~~E~~~l~~ia 125 (140)
T PF05099_consen 113 ISPEEQEFLRRIA 125 (140)
T ss_dssp -SCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444445665553
No 288
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=23.83 E-value=92 Score=21.22 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHH
Q psy2947 387 TVPAKYLKHVLVNWGEGLSSKEVDQ 411 (441)
Q Consensus 387 ~is~~ef~~~l~~~~~~l~~~~~~~ 411 (441)
.|+.++|..+++.....++.++++.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4788888888888777777777653
No 289
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=23.54 E-value=1.4e+02 Score=21.73 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 437 (441)
Q Consensus 385 ~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~ 437 (441)
+|.|+-||...+.. .+-+.+.+++++.-.- .-|..-.+-|..++..-.
T Consensus 27 n~~it~E~y~~V~a---~~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 27 NDYFSTEDAEIVCA---CPTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred cCCccHHHHHHHHh---CCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHH
Confidence 45566665555442 2344555555555542 223344455555554433
No 290
>KOG4004|consensus
Probab=23.43 E-value=35 Score=29.18 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947 337 VDAFKAADTTK-SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 397 (441)
Q Consensus 337 ~~~f~~~D~d~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l 397 (441)
..-|-.+|+.. ||+++-.|+.-+-..+. ..+.-+...|.-.|.|+||+|+.+|....+
T Consensus 190 ~wqf~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 190 HWQFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeeccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34455566654 77777777654322221 112334556777888888888887765443
No 291
>KOG0998|consensus
Probab=23.40 E-value=45 Score=36.13 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399 (441)
Q Consensus 335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~ 399 (441)
.....|+..|..++|.|+-.+-..++... ......+-.++...|..+.|+++..+|...++-
T Consensus 12 ~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 12 LFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred hHHHhhhccCcccCCcccHHHhhhhhhcc---ccchhhhhccccccccccCCccccccccccchH
Confidence 45556666666666666666655444432 222344445566666666666666666666654
No 292
>KOG3077|consensus
Probab=23.37 E-value=5.7e+02 Score=23.27 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=41.2
Q ss_pred HHHHHHHh-hcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947 335 EVVDAFKA-ADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 413 (441)
Q Consensus 335 ~~~~~f~~-~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~ 413 (441)
.+.+.|.. .|.+.+..|..+-..+++..+.-+...-..+--++ .++...-|..+.+||..-|.+++. -+.+.++..+
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAw-kl~A~~m~~Fsr~ef~~g~~~l~~-dS~d~lq~~l 142 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAW-KLGAATMCEFSREEFLKGMTALGC-DSIDKLQQRL 142 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHH-HhccchhhhhhHHHHHHHHHHcCC-CcHHHHHHHH
Confidence 34444433 35555556666666666666533322222222233 234666778888888887777764 2344444433
Q ss_pred H
Q psy2947 414 R 414 (441)
Q Consensus 414 ~ 414 (441)
+
T Consensus 143 ~ 143 (260)
T KOG3077|consen 143 D 143 (260)
T ss_pred H
Confidence 3
No 293
>KOG4004|consensus
Probab=23.33 E-value=31 Score=29.50 Aligned_cols=55 Identities=9% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHhCCCC-CCcccHHHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947 377 FKAADTTK-SGTVPAKYLKHVLVNWGEGLS-SKEVDQIFREANVTMNSKVRYEDFVKIAC 434 (441)
Q Consensus 377 f~~~D~~~-~G~is~~ef~~~l~~~~~~l~-~~~~~~l~~~~d~d~dg~i~~~ef~~~l~ 434 (441)
|-..|+-. ||++|-.|+.-+-..+ ++ +..+...|...|.|.||.|+.+|+...+-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 55567544 9999998875443222 33 34467799999999999999999987663
No 294
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=22.87 E-value=2e+02 Score=17.93 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=9.9
Q ss_pred CcccHHHHHHHHHhhc
Q psy2947 349 GKLSFPDFLKVMHTHS 364 (441)
Q Consensus 349 g~i~~~ef~~~~~~~~ 364 (441)
+.++..+..+.+..+.
T Consensus 17 ~~~~~~~v~~~v~~Ll 32 (47)
T PF02671_consen 17 GRISRSEVIEEVSELL 32 (47)
T ss_dssp TCSCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHH
Confidence 5566667666666553
No 295
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=22.85 E-value=1.2e+02 Score=20.97 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q psy2947 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTM 420 (441)
Q Consensus 384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~ 420 (441)
.++-++..++.+.+...|..++++.+...++.++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3467888888888887788888888888888886554
No 296
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=22.37 E-value=73 Score=18.48 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=9.9
Q ss_pred CCceeHHHHHHHHh
Q psy2947 421 NSKVRYEDFVKIAC 434 (441)
Q Consensus 421 dg~i~~~ef~~~l~ 434 (441)
.|+|+++|++.+..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 46778888777663
No 297
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.23 E-value=58 Score=27.30 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947 369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416 (441)
Q Consensus 369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~ 416 (441)
+...+.++++++-..+...++.++|.+.+ .+|..++.++++..+..+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 35788899998876666789999999888 467788999998877766
No 298
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=22.17 E-value=1.4e+02 Score=25.65 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=14.3
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2947 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 415 (441)
Q Consensus 382 ~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~ 415 (441)
.|.+|++..+|+.+....-+..++.+++.+++..
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 3455555555555555544444555555555544
No 299
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.08 E-value=62 Score=17.28 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.9
Q ss_pred CCCCCEEEccCCcC
Q psy2947 151 MPQLDTVYRHGNHN 164 (441)
Q Consensus 151 l~~L~~L~l~~N~~ 164 (441)
+++|+.|+|+++..
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 36788888888874
No 300
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=21.56 E-value=1.6e+02 Score=25.09 Aligned_cols=33 Identities=3% Similarity=0.014 Sum_probs=17.5
Q ss_pred CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHH
Q psy2947 345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 378 (441)
Q Consensus 345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 378 (441)
.|.+|.++.+++.+.+... ....+.+.++++-.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~vV~ 60 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEAVVE 60 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHHHH
Confidence 4566777777777666532 12233444444443
No 301
>PRK00523 hypothetical protein; Provisional
Probab=21.38 E-value=2.1e+02 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.362 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416 (441)
Q Consensus 385 ~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~ 416 (441)
+--|+.+-++.++..+|...++.+++.+.+.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677888888888888888888888888776
No 302
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=4.1e+02 Score=22.90 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=5.4
Q ss_pred ccCCCccCHHHH
Q psy2947 276 ARNGTIKTLDEL 287 (441)
Q Consensus 276 d~~G~i~~~~el 287 (441)
|=||+| +.++.
T Consensus 9 DFDGTI-Tl~Ds 19 (220)
T COG4359 9 DFDGTI-TLNDS 19 (220)
T ss_pred cCCCce-Eecch
Confidence 445666 34443
No 303
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=20.90 E-value=3.3e+02 Score=19.98 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362 (441)
Q Consensus 312 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~ 362 (441)
--|.+.+|.+.+......... .+..++=..+|...+++|+.=||-.+.+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 346777777777766554322 22233334456666667766666555443
No 304
>PRK15330 cell invasion protein SipD; Provisional
Probab=20.70 E-value=6.3e+02 Score=23.83 Aligned_cols=83 Identities=5% Similarity=0.035 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC--------------CCHHHHHHHHHHh
Q psy2947 351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG--------------LSSKEVDQIFREA 416 (441)
Q Consensus 351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~--------------l~~~~~~~l~~~~ 416 (441)
++.+.|+..+..+...-.........|......+-...+.+|+..+++++|.+ +....++.|+..+
T Consensus 189 Fd~~slk~~i~~lidKY~~~~k~~~l~pa~~~~~~~~~t~aEae~W~keLgl~~~~vk~~Gsgf~V~iD~~~I~~m~~Sl 268 (343)
T PRK15330 189 LDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQDI 268 (343)
T ss_pred ecHHHHHHHHHHHHHhcccccccceecccccccccccCCHHHHHHHHHHhCCCccccccCCCceEEecCcHHHHHHHHhc
Confidence 56777777666542111111111122322221222345788888888876432 2233577788877
Q ss_pred CC---CCCC---ceeHHHHHHHH
Q psy2947 417 NV---TMNS---KVRYEDFVKIA 433 (441)
Q Consensus 417 d~---d~dg---~i~~~ef~~~l 433 (441)
+. +++| .|+-.+|-.+.
T Consensus 269 ~g~g~~GkGS~~~I~tAsYQAWq 291 (343)
T PRK15330 269 DGLGAPGKDSKLEMDNAKYQAWQ 291 (343)
T ss_pred cCCCCCCCCCccccCHHHHHHHH
Confidence 74 2223 46666665443
No 305
>PLN02223 phosphoinositide phospholipase C
Probab=20.23 E-value=4.2e+02 Score=27.03 Aligned_cols=68 Identities=7% Similarity=0.004 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHH---HhhccCC-CChHHHHHHHHHhCC--------CCCCcccHHHHHHHHH
Q psy2947 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVM---HTHSKAE-DIPKEVVDAFKAADT--------TKSGTVPAKYLKHVLV 398 (441)
Q Consensus 331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~---~~~~~~~-~~~~~~~~~f~~~D~--------~~~G~is~~ef~~~l~ 398 (441)
...+.++.+|..|. ++.|.++.+.+.+++ ...+++. ...++.+.+++.+=. .+.+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678888888884 566778877777766 4443322 223444444433211 1236699999999886
Q ss_pred H
Q psy2947 399 N 399 (441)
Q Consensus 399 ~ 399 (441)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 306
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.07 E-value=4.1e+02 Score=20.37 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947 388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435 (441)
Q Consensus 388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~ 435 (441)
+|.+++.+++...|..++.+.+..+++.+. | ++.++.+.....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHHHHh
Confidence 999999999999999999999999999883 2 477888766544
Done!