RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2947
(441 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 112 bits (282), Expect = 1e-29
Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF ++ GTI T EL +MRSLG +PT AEL+
Sbjct: 12 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 50
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D+ EV D +G + FP+FL +M K D +E+ +AFK D
Sbjct: 51 ------DMINEV-------DADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
+G + A L+HV+ N GE L+ +EVD++ REA+V + ++ YE+FVK+ +
Sbjct: 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 75.8 bits (187), Expect = 3e-16
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 267 EFRECFFLFARNGT--IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E +E F LF R+ I +EL I+RSLG +P+ AE+ K F +
Sbjct: 21 ELKEAFQLFDRDSDGLI-DRNELGKILRSLGFNPSEAEINK---------LFEEI----- 65
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+ + FP+FL VM K D +E+ +AFK D
Sbjct: 66 --------------------DAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDH 105
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + L+ VL + GE LS +EV+++ +E + + ++ YE+F K+
Sbjct: 106 DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKL 153
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 64.7 bits (158), Expect = 2e-12
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 36/169 (21%)
Query: 266 LEFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
E RE F LF +G+ T+D EL V MRSLG P E+K+ +A
Sbjct: 17 KEIREAFDLFDTDGS-GTIDPKELKVAMRSLGFEPKKEEIKQMIA--------------- 60
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
D+ K+ SGK+ F +FL +M D +E++ AF+ D
Sbjct: 61 -------DVDKDG-----------SGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD 102
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
K+G + K LK V GE ++ +E+ ++ EA+ + ++ E+F +I
Sbjct: 103 KTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRI 151
Score = 38.9 bits (91), Expect = 0.001
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
ED KE+ +AF DT SGT+ K LK + + G +E+ Q+ + + + K+ +
Sbjct: 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDF 72
Query: 427 EDFVKIA 433
E+F+ I
Sbjct: 73 EEFLDIM 79
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 47.5 bits (114), Expect = 2e-07
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 83 VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
++ L L +N LT +P L NL+VL L+ N L + S P + +L L L N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNNL 60
Score = 33.3 bits (77), Expect = 0.020
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
NL+ L L++N L NL L L N L ++ S +P L ++ GN+
Sbjct: 1 NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 45.6 bits (109), Expect = 8e-07
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
E RE F LF ++ GTI + DEL ++SLG + E+ + + E GK+ F +FL
Sbjct: 1 ELREAFRLFDKDGDGTI-SADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59
Query: 321 KVMH 324
++M
Sbjct: 60 ELMA 63
Score = 39.1 bits (92), Expect = 2e-04
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
E+ +AF+ D GT+ A LK L + GEGLS +E+D++ RE + + K+ +E+F++
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 432 I 432
+
Sbjct: 61 L 61
Score = 34.1 bits (79), Expect = 0.012
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGTV 388
E+ +AF+ D G +S + + + E + +E +D + D G +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLG--EGLSEEEIDEMIREVDKDGDGKI 53
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 50.4 bits (120), Expect = 9e-07
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
++ L L N + SLP + L NL+ L L+ N + +P L+ NL +L L N +
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--DLSDLPKLLSNLSNLNNLDLSGNKI 198
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
LP + + L+ + N
Sbjct: 199 SDLPPEIELLSALEELDLSNNS 220
Score = 41.9 bits (98), Expect = 5e-04
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 73 IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
+ + ++ L L N L+ LP + L+NL L L+ N + +P + L
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS--DLPPEIELLSALE 212
Query: 133 HLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
L L NN + L L ++ L + N
Sbjct: 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNN 242
Score = 38.8 bits (90), Expect = 0.004
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 66 LSLSYTPI---GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L LS+ + + + + L L N ++ LPP+I L+ L L L++N + +
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII--ELL 225
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
+L+ KNL+ L L NN L+ LP + ++ L+T+ N
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265
Score = 34.6 bits (79), Expect = 0.10
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
E L L +NS+ L + L NL L L++N L++ NL L L NN +
Sbjct: 212 EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQI 267
Score = 34.6 bits (79), Expect = 0.11
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + L L +N L LP IG L+NL L L++N + + S +LT NL L L
Sbjct: 228 LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLT---NLRELDL 284
Query: 137 DNNLLDALPGFLLSMPQLD 155
N L + + L
Sbjct: 285 SGNSLSNALPLIALLLLLL 303
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
E L L +N +T LPP + L NL L L+ N + + S
Sbjct: 4 ETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 104 TNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF 147
TNL L L++N + +P L+ NL L L N + L
Sbjct: 1 TNLETLDLSNNQIT--DLPP-LSNLPNLETLDLSGNKITDLSPL 41
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 39.4 bits (92), Expect = 0.003
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNL 140
++ L L N L+ +PP I L L L L+DN L + IP + +NL L+L NN
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNF 320
Query: 141 LDALPGFLLSMPQL 154
+P L S+P+L
Sbjct: 321 TGKIPVALTSLPRL 334
Score = 37.5 bits (87), Expect = 0.015
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
++VL L SN + +P ++G+ NL VL L+ N L IP L NL L L +N L
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSSGNLFKLILFSNSL 392
Query: 142 D 142
+
Sbjct: 393 E 393
Score = 36.7 bits (85), Expect = 0.027
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 86 LSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDA 143
L L N+LT +P +G L NL+ L L N L + IP ++ + L L L DN+L
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-SGPIPPSIFSLQKLISLDLSDNSLSGE 299
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
+P ++ + L+ ++ N+
Sbjct: 300 IPELVIQLQNLEILHLFSNN 319
Score = 35.2 bits (81), Expect = 0.075
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 78 FKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
F +E L L N + ++P +G L+ L L L++N L + IP L+ CK L L L
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDELSSCKKLVSLDL 530
Query: 137 -DNNLLDALPGFLLSMP---QLD 155
N L +P MP QLD
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLD 553
Score = 34.8 bits (80), Expect = 0.088
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 28/104 (26%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQN-----------------AS---- 120
+E L L +N L+ +P DIG ++L+VL L N L AS
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201
Query: 121 --IPFTLTFCKNLTHLYLD-NNLLDALP---GFLLSMPQLDTVY 158
IP L K+L +YL NNL +P G L S+ LD VY
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 35.4 bits (82), Expect = 0.004
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 312 GKLS---FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
G + LK + E++ + + F D G++SF +FL+ M
Sbjct: 9 GYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 32.7 bits (75), Expect = 0.035
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ----IFREANVTMNSKVRYEDFVKI 432
K D G + + L+ +L G L+ +EV++ F E + + ++ +E+F++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEA 59
Score = 26.6 bits (59), Expect = 4.5
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 341 KAADTTKSGKLS---FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
K D G + LK + E++ + + F D G +
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRI 51
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 32.0 bits (74), Expect = 0.027
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHT 362
E+ +AFK D GK+SF +F +++
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKK 28
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 32.1 bits (74), Expect = 0.037
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVM 360
+ G ++ + + + + +E VD F+ DT GK+SF +F ++
Sbjct: 1 EKGLITREELKRAL-ALLG-ISLSEEEVDILFREFDTDGDGKISFEEFCVLL 50
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 31.2 bits (72), Expect = 0.061
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHT 362
E+ +AF+ D GK+ F +F ++
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28
>gnl|CDD|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding arm.
This domain is found at the C-terminus of Valyl tRNA
synthetases.
Length = 66
Score = 31.5 bits (72), Expect = 0.097
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 302 ELKKYLAEKG---GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 342
EL K E KLS P F+ +KA P EVV+ KA
Sbjct: 12 ELAKLQKEIERLQKKLSNPGFV------AKA---PAEVVEEEKA 46
>gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103). This
family consists of several repeats of around 30 residues
in length which are found specifically in
mature-parasite-infected erythrocyte surface antigen
proteins from Plasmodium falciparum. This family often
found in conjunction with pfam00226.
Length = 215
Score = 34.1 bits (77), Expect = 0.10
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP 389
E+I K+V D K DT + K+ P+ + T E+I K+V D K DT + V
Sbjct: 75 EEIKKQVEDGIKENDTEGNDKVKGPEII----TEEVKEEIKKQVEDGIKENDTEGNDKVK 130
Query: 390 AKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
++ + K+V++ +E + K+ + +
Sbjct: 131 G---PEIITEEVKEEIKKQVEEGIKENDTEGKDKLIGPEII 168
Score = 31.0 bits (69), Expect = 1.1
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 303 LKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362
+K+ E K+ P+ + T E+I K+V D K DT + K+ P+ + T
Sbjct: 85 IKENDTEGNDKVKGPEII----TEEVKEEIKKQVEDGIKENDTEGNDKVKGPEII----T 136
Query: 363 HSKAEDIPKEVVDAFKAADT 382
E+I K+V + K DT
Sbjct: 137 EEVKEEIKKQVEEGIKENDT 156
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.9 bits (69), Expect = 0.15
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 336 VVDAFKAADTTKSGKLSFPDFLKVM 360
+ D F+ DT GK+S + +++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
similar to S100A11. S100A11 is a member of the S-100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A11 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins exhibit unique patterns of tissue- and
cell type-specific expression and have been implicated
in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100 proteins have also been associated with a
variety of pathological events, including neoplastic
transformation and neurodegenerative diseases such as
Alzheimer's, usually via over expression of the protein.
S100A11 is expressed in smooth muscle and other tissues
and involves in calcium-dependent membrane aggregation,
which is important for cell vesiculation . As is the
case for many other S100 proteins, S100A11 is homodimer,
which is able to form a heterodimer with S100B through
subunit exchange. Ca2+ binding to S100A11 results in a
conformational change in the protein, exposing a
hydrophobic surface that interacts with target proteins.
In addition to binding to annexin A1 and A6 S100A11
also interacts with actin and transglutaminase.
Length = 89
Score = 31.7 bits (72), Expect = 0.16
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 296 MSPTIAELKKYLAEKGG---KLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKS 348
+ IA +KY A K G +LS +FL M+T +K + P + K D
Sbjct: 8 IESLIAVFQKY-AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSD 66
Query: 349 GKLSFPDFL 357
G+L F +FL
Sbjct: 67 GQLDFQEFL 75
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 34.0 bits (78), Expect = 0.18
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCL 116
+EVL L NS S+P +G+LT+LR+L L N L
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
>gnl|CDD|221136 pfam11568, Med29, Mediator complex subunit 29. Mediator is a large
complex of up to 33 proteins that is conserved from
plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-active part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med29, along with
Med11 and Med28, in mammals, is part of the core
head-region of the complex. Med29 is the apparent
orthologue of the Drosophila melanogaster Intersex
protein, which interacts directly with, and functions as
a transcriptional coactivator for, the DNA-binding
transcription factor Doublesex, so it is likely that
mammalian Med29 serves as a target for one or more
DNA-binding transcriptional activators.
Length = 148
Score = 31.7 bits (72), Expect = 0.37
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 327 SKAEDIPKEV-VDAFKAADTTKSGKLSFPDFLKVMHTH-SKAEDIPKEVVDAFK 378
S ++ +P EV V++ T ++ +LS+P +L + + A+DI ++DA +
Sbjct: 84 SSSKYLPGEVMVNSVTDPTTIQTVQLSYPQYLNSVKSQIESAKDIHDTLLDAAQ 137
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 28.3 bits (64), Expect = 0.58
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTH 363
E+ +AFK D G +S + K + +
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSL 29
Score = 27.9 bits (63), Expect = 0.71
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
E+ +AFK D G + A+ L+ L + G
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|149089 pfam07830, PP2C_C, Protein serine/threonine phosphatase 2C,
C-terminal domain. Protein phosphatase 2C (PP2C) is
involved in regulating cellular responses to stress in
various eukaryotes. It consists of two domains: an
N-terminal catalytic domain and a C-terminal domain
characteristic of mammalian PP2Cs. This domain consists
of three antiparallel alpha helices, one of which packs
against two corresponding alpha-helices of the
N-terminal domain. The C-terminal domain does not seem
to play a role in catalysis, but it may provide protein
substrate specificity due to the cleft that is created
between it and the catalytic domain.
Length = 81
Score = 29.5 bits (67), Expect = 0.60
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 301 AELKKYLA-------EKGGKLSFPDFLKVMHTHSKAEDIP 333
AEL KYL EK + PD L VM T + +EDIP
Sbjct: 22 AELDKYLEQRVEEIIEKSSEDGVPDLLHVMKTLA-SEDIP 60
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 28.1 bits (64), Expect = 0.69
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 130 NLTHLYLDNNLLDALP 145
NL L L NN L +LP
Sbjct: 3 NLRELDLSNNQLSSLP 18
Score = 26.5 bits (60), Expect = 2.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 84 EVLSLKSNSLTSLPPDIGR 102
L L +N L+SLPP +
Sbjct: 5 RELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 28.1 bits (64), Expect = 0.69
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 130 NLTHLYLDNNLLDALP 145
NL L L NN L +LP
Sbjct: 3 NLRELDLSNNQLSSLP 18
Score = 26.5 bits (60), Expect = 2.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 84 EVLSLKSNSLTSLPPDIGR 102
L L +N L+SLPP +
Sbjct: 5 RELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|173855 cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 470
Score = 31.8 bits (73), Expect = 0.82
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 399 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
N+G G S+ EVD + E + + R E +I
Sbjct: 401 NYG-GYSNPEVDALIEELRTEFDPEERAELAAEIQ 434
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 29.0 bits (66), Expect = 1.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 305 KYLAEKGGK--LSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGKLSFPDFL 357
KY ++G K LS + +++ T K + P+ V K D K GK+ F +FL
Sbjct: 16 KYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 83 VEVLSLKSNSLTSLPPDIGRL 103
+E L L +N+L+SLPP +G L
Sbjct: 2 LEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|206170 pfam14000, Packaging_FI, DNA packaging protein FI. This family
includes the lambda phage DNA-packaging protein FI.
Proteins in this family are typically between 124 and
140 amino acids in length. There is a conserved EEE
sequence motif.
Length = 125
Score = 29.3 bits (66), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 281 IKTLDELSVIM-RSLGMSPTIAELKKYLAE 309
+ L EL+ I+ R +S + AEL + +AE
Sbjct: 6 LARLRELAAILGREPDVSGSAAELAQRVAE 35
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 30.4 bits (68), Expect = 2.3
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN--ASIPFTL---------------TFC 128
L+++SNSLT+LP + L+ L +N L + AS+P L T
Sbjct: 309 LNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLP 366
Query: 129 KNLTHLYLDNNLLDALP 145
+T L + N L LP
Sbjct: 367 PTITTLDVSRNALTNLP 383
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 29.6 bits (67), Expect = 2.9
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 82 TVEVLSLKSNSL-----TSLPPDIGRLTNLRVLCLTDNCL--QNAS-IPFTLTFCKNLTH 133
++ L+L +N + +L + NL VL L +N L + AS + TL K+L
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225
Query: 134 LYLDNNLLDALP 145
L L +N L
Sbjct: 226 LNLGDNNLTDAG 237
>gnl|CDD|167589 PRK03717, PRK03717, ribonuclease P protein component 2;
Provisional.
Length = 120
Score = 28.2 bits (63), Expect = 3.7
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 289 VIMRSLGMSPTIAELK-KYLAEKGGK 313
I+R+LG+S TI LK K+L+E G K
Sbjct: 95 AIIRTLGVSGTIKRLKRKFLSEFGWK 120
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 29.3 bits (66), Expect = 4.4
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDF-LKVMHTHSKAEDIPKEVVDAFKAAD 381
T AE+ + V A +AA T G + F DF + + + + P + +
Sbjct: 131 TAQSAENAGRLVDQALQAAVTPHRGPV-FVDFPMDHAFSMADDDGRPGALTELPAGPT 187
>gnl|CDD|173869 cd08504, PBP2_OppA, The substrate-binding component of an ABC-type
oligopetide import system contains the type 2
periplasmic binding fold. This family represents the
periplasmic substrate-binding component of an
ATP-binding cassette (ABC)-type oligopeptide transport
system comprised of 5 subunits. The transport system
OppABCDEF contains two homologous integral membrane
proteins OppB and OppF that form the translocation pore;
two homologous nucleotide-binding domains OppD and OppF
that drive the transport process through binding and
hydrolysis of ATP; and the substrate-binding protein or
receptor OppA that determines the substrate specificity
of the transport system. The dipeptide (DppA) and
oligopeptide (OppA) binding proteins differ in several
ways. The DppA binds dipeptides and some tripeptides and
is involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 498
Score = 29.1 bits (66), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 399 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
N+G G S+ E D++ +A + + R+E K
Sbjct: 422 NYG-GYSNPEYDKLLAKAATETDPEKRWELLAK 453
>gnl|CDD|223806 COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion
transport and metabolism].
Length = 145
Score = 28.0 bits (63), Expect = 5.2
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 296 MSPTIAELKKYLAEKGGKLSFP-----DFLKVMHTHSKAEDIPKEVVDAFK 341
M+ T+ + + L E G +L+ + L H AE++ +E+ +
Sbjct: 1 MTMTLEDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGP 51
>gnl|CDD|234996 PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit
HisF; Provisional.
Length = 253
Score = 28.5 bits (65), Expect = 6.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 299 TIAELKKYLAEKG 311
TI ELK YLAE+G
Sbjct: 236 TIGELKAYLAEQG 248
>gnl|CDD|198461 cd10470, FAM20B_C, C-terminal putative kinase domain of FAM20B
xylose kinase. Experiments with human FAM20B suggest
that it is a xylose kinase that participates in
proteoglycan production. It may regulate the number of
glycosaminoglycan chains by phosphorylating the xylose
residue in the glycosaminoglycan-protein linkage region
of proteoglycans. The C-terminal domain of FAM20B is a
putative kinase domain, based on mutagenesis of the
C-terminal domain of Drosophila Four-Jointed, a related
Golgi kinase. This subfamily belongs to the FAM20_C
(also known as DUF1193) domain family.
Length = 206
Score = 28.1 bits (63), Expect = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 239 YHVCHYCNSAEP 250
Y VC+YC EP
Sbjct: 11 YGVCYYCKEEEP 22
>gnl|CDD|223056 PHA03362, PHA03362, single-stranded binding protein UL29;
Provisional.
Length = 1189
Score = 28.5 bits (64), Expect = 10.0
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRS 183
T+ F K T Y N ++ P + + Q YF + + Y I +
Sbjct: 860 TIAFVKRFTDEYAAINFINLTPNNIGELAQF----------YFANLILKYCDHSQYFINT 909
Query: 184 TSTRDEVLRKQKKLHQPSRLQD 205
+ L ++ P+ L
Sbjct: 910 LTAI---LVGSRRPRDPAALAG 928
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,059,635
Number of extensions: 2084229
Number of successful extensions: 2075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2050
Number of HSP's successfully gapped: 70
Length of query: 441
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 341
Effective length of database: 6,502,202
Effective search space: 2217250882
Effective search space used: 2217250882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (26.9 bits)