RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2947
(441 letters)
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 135 bits (343), Expect = 1e-38
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 42/168 (25%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E + ++ G I ++D S R LG++P+ + KK G L++ +L+ +
Sbjct: 16 ESDVRIYFNEKSSGGKI-SIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLS 74
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+D +E++ F D
Sbjct: 75 ICVHDKDNVEELIKMFAHFD--------------------------NN-----------C 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + +K++L WG+ L+ +E + + Y+ F +
Sbjct: 98 TGYLTKSQMKNILTTWGDALTDQEAIDALNAFSS--EDNIDYKLFCED 143
Score = 43.0 bits (102), Expect = 3e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFLKV 322
E + F F G + T ++ I+ + G + T E L + + F +
Sbjct: 85 ELIKMFAHFDNNCTGYL-TKSQMKNILTTWGDALTDQEAIDALNAFSSEDNIDYKLFCED 143
Query: 323 M 323
+
Sbjct: 144 I 144
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 128 bits (325), Expect = 5e-36
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 39/171 (22%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+++ F LF R+ G I + ++R+ G +PT+AE+ + + ++ FL+V++
Sbjct: 6 PYKQAFSLFDRHGTGRI-PKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLN 64
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+ + P+E V F+ D
Sbjct: 65 RPNGFDM-----------------------------------PGDPEEFVKGFQVFDKDA 89
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
+G + L++VL + GE LS++E+D++ + V + V Y DFV++ A
Sbjct: 90 TGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 139
Score = 32.1 bits (74), Expect = 0.13
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
+ D AF D +G +P + +L G+ + E+ +I ++
Sbjct: 1 STDD-SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVD---- 55
Query: 426 YEDFVKI 432
E F+++
Sbjct: 56 MEQFLQV 62
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 125 bits (315), Expect = 2e-34
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 44/182 (24%)
Query: 267 EFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 322
E RE F LF R+G + ++ ++R LGM+PT A++ ++
Sbjct: 10 EVREVFDLFDFWDGRDGDV-DAAKVGDLLRCLGMNPTEAQVHQHGGT------------- 55
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED--IPKEVVDAFKAA 380
+ L + S + E ++AFK
Sbjct: 56 ---------------------KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTF 94
Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS--KVRYEDFVK-IACAPV 437
D G + + +++VL GE ++ + + IF ++ + ++YED +K + P
Sbjct: 95 DREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154
Query: 438 PD 439
PD
Sbjct: 155 PD 156
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 121 bits (306), Expect = 3e-33
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + E
Sbjct: 11 EFKEAFALFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D +G + FP+FL +M K +D +E+++AFK D
Sbjct: 55 ------------------VDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + A L+HV+ N GE L+ EVD++ REA++ + + YE+FV++
Sbjct: 97 NGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144
Score = 38.6 bits (91), Expect = 9e-04
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E E F +F R NG I + EL +M +LG T E+ + + E
Sbjct: 84 ELIEAFKVFDRDGNGLI-SAAELRHVMTNLGEKLTDDEVDEMIRE--------------- 127
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
AD G +++ +F+++M
Sbjct: 128 ------------------ADIDGDGHINYEEFVRMM 145
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 119 bits (302), Expect = 8e-33
Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 39/169 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF G I T + L +++ G+ A + E
Sbjct: 7 EFKEAFELFDSERTGFI-TKEGLQTVLKQFGVRVEPAAFNEMFNE--------------- 50
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
AD T +GK+ FP+FL +M K + AF+ D
Sbjct: 51 ------------------ADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEG 92
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 432
+G +P L+ L+N G+ L E + ++RY++F+
Sbjct: 93 TGYIPKAALQDALLNLGDRLKPHEFAEFLGITET--EKGQIRYDNFINT 139
Score = 41.3 bits (98), Expect = 9e-05
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
+D E +AF+ D+ ++G + + L+ VL +G + +++F EA+ T N K++
Sbjct: 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ 60
Query: 426 YEDFVKIA 433
+ +F+ +
Sbjct: 61 FPEFLSMM 68
Score = 32.5 bits (75), Expect = 0.098
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 37/98 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
R+ F F G I L + +LG E
Sbjct: 80 ILRQAFRTFDPEGTGYI-PKAALQDALLNLGDRLKPHEF--------------------- 117
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362
+ +T + G++ + +F+ M T
Sbjct: 118 -----AEF-------LGITET-EKGQIRYDNFINTMFT 142
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 119 bits (301), Expect = 1e-32
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 40/168 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F + +N G I ++L ++ S+G +PT L+ ++E G ++F FL +
Sbjct: 8 EFKEAFNMIDQNRDGFI-DKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFG 66
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D + +AF D SG +
Sbjct: 67 EKLNGTDPEDVIRNAFACFDEEASGFIH-------------------------------- 94
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+L+ +L G+ + +EVD+++REA + Y +F +I
Sbjct: 95 -----EDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137
Score = 37.1 bits (87), Expect = 0.003
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
R F F +G I D L ++ ++G + +
Sbjct: 77 VIRNAFACFDEEASGFI-HEDHLRELLTTMGD----------------RFT--------- 110
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
+EV + ++ A K G ++ +F +++
Sbjct: 111 --------DEEVDEMYREAPIDKKGNFNYVEFTRIL 138
Score = 34.8 bits (81), Expect = 0.017
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
+E +AF D + G + + L +L + G+ + + ++ + EA +N + F+
Sbjct: 7 QEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPIN----FTMFL 62
Query: 431 KI 432
+
Sbjct: 63 TM 64
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 117 bits (296), Expect = 7e-32
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF ++ G+I + EL+ +MRSLG+SP+ AE+ + E
Sbjct: 12 EFKEAFALFDKDNSGSI-SASELATVMRSLGLSPSEAEVADLMNE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D + + F +FL +M K D +E+++AFK D
Sbjct: 56 ------------------IDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + A LKHVL + GE L+ EVD++ RE + + ++ + F +
Sbjct: 98 DGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDG-SGEINIKQFAAL 144
Score = 45.1 bits (108), Expect = 6e-06
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---KGGKLSFPDFLK 321
E E F +F + +G I + EL ++ S+G T AE+ + L E G+++ F
Sbjct: 85 ELLEAFKVFDKNGDGLI-SAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINIKQFAA 143
Query: 322 VM 323
++
Sbjct: 144 LL 145
Score = 39.8 bits (94), Expect = 4e-04
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 366 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
++++ +E + FK A D SG++ A L V+ + G S EV + E +V N
Sbjct: 2 SQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGN 61
Query: 422 SKVRYEDFVKIA 433
+ + +F+ +
Sbjct: 62 HAIEFSEFLALM 73
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 117 bits (296), Expect = 9e-32
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 37/170 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+F+E F LF R I T ++ I R+LG +PT AE+ K L
Sbjct: 9 DFKEAFLLFDRTGDAKI-TASQVGDIARALGQNPTNAEINKILGN--------------- 52
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED--IPKEVVDAFKAADT 382
+ + ++F +FL ++ + +D ++ V+ + D
Sbjct: 53 ------------PS----KEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDK 96
Query: 383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+GTV L+HVL GE ++ +EV+++ + N + YE FVK
Sbjct: 97 EGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQ-EDSNGCINYEAFVKH 145
Score = 37.1 bits (87), Expect = 0.003
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 37/96 (38%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+F E +F + NGT+ EL ++ +LG T E+
Sbjct: 86 DFVEGLRVFDKEGNGTV-MGAELRHVLATLGEKMTEEEV--------------------- 123
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
E++ K D +G +++ F+K +
Sbjct: 124 -----EELMKGQED--------SNGCINYEAFVKHI 146
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 118 bits (297), Expect = 2e-31
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + E
Sbjct: 12 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D +G + FP+FL +M K D +E+ +AF+ D
Sbjct: 56 ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + A L+HV+ N GE L+ +EVD++ REA++ + +V YE+FV++
Sbjct: 98 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 145
Score = 46.0 bits (110), Expect = 4e-06
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 39/127 (30%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E RE F +F + NG I + EL +M +LG T E+ + + E
Sbjct: 85 EIREAFRVFDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIRE--------------- 128
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP---KEVVDAFKAAD 381
AD G++++ +F+++M + + + +A
Sbjct: 129 ------------------ADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIG 170
Query: 382 TTKSGTV 388
Sbjct: 171 KMARVFS 177
Score = 40.2 bits (95), Expect = 4e-04
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 366 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
A+ + +E + FK A D GT+ K L V+ + G+ + E+ + E + N
Sbjct: 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN 61
Query: 422 SKVRYEDFVKIA 433
+ + +F+ +
Sbjct: 62 GTIDFPEFLTMM 73
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 116 bits (292), Expect = 3e-31
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 40/173 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFPDF 319
++ F LF + G I D L +R++G +PT ++ + L+
Sbjct: 5 ANKDIFTLFDKKGQGAI-AKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQI 63
Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
++ + K D + + ++ V AF+
Sbjct: 64 TGLIEVNEKELD--------------------------------ATTKAKTEDFVKAFQV 91
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
D +G V L+++L GE L+ EVD++ + V N ++ Y+ F++
Sbjct: 92 FDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+F + F +F + G + ++ +L ++ LG T AE+ + L
Sbjct: 84 DFVKAFQVFDKESTGKV-SVGDLRYMLTGLGEKLTDAEVDELLKG--------------- 127
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
+ +G++ + F++ +
Sbjct: 128 ------------------VEVDSNGEIDYKKFIEDV 145
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 115 bits (290), Expect = 5e-31
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 40/175 (22%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE-KGGKLSFPDFLKVM 323
+ +ECF +F ++ G + +++EL +RSLG +PT AEL + + F V
Sbjct: 6 QIQECFQIFDKDNDGKV-SIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVY 64
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
K + E++DAF+A D
Sbjct: 65 RKPIKTPTEQSK------------------------------------EMLDAFRALDKE 88
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP 438
+GT+ L+ +L+N G+ L+S EV+++ +E +V+ + + YE FV + P
Sbjct: 89 GNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVTGYP 143
Score = 31.7 bits (73), Expect = 0.20
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 434
+ F+ D G V + L L + G+ ++ E++ I + N F +
Sbjct: 9 ECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFD---LATFKTVYR 65
Query: 435 APVPD 439
P+
Sbjct: 66 KPIKT 70
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 115 bits (290), Expect = 6e-31
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 41/168 (24%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E +E F + ++ G I +++L + SLG P EL L E G+L+F FL +
Sbjct: 17 ELKEAFTMIDQDRDGFI-GMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFG 75
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D + +AF D G +
Sbjct: 76 EKVSGTDPEDALRNAFSMFDEDGQGFIP-------------------------------- 103
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
YLK +L N G+ S +E+ ++++A + N + Y V I
Sbjct: 104 -----EDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI 145
Score = 37.9 bits (89), Expect = 0.002
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 38/104 (36%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
R F +F G I D L ++ ++G S
Sbjct: 86 ALRNAFSMFDEDGQGFI-PEDYLKDLLENMGD----------------NFS--------- 119
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED 368
+E+ + +K A K+ + ++ + + ++ ED
Sbjct: 120 --------KEEIKNVWKDAPL-KNKQFNYNKMVDIK-GKAEDED 153
Score = 34.4 bits (80), Expect = 0.029
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
+E+ +AF D + G + + LK + + G E++ + +E +N + F+
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLN----FTAFL 71
Query: 431 KI 432
+
Sbjct: 72 TL 73
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 115 bits (290), Expect = 6e-31
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 37/170 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF R G I + +MR+LG +PT AE+ K L
Sbjct: 11 EFKEAFELFDRVGDGKI-LYSQCGDVMRALGQNPTNAEVLKVLGN--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADT 382
+D KS ++ F FL ++ +K + ++ ++ F+ D
Sbjct: 55 ------------PK----SDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDK 98
Query: 383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G V L+HVL GE ++ +EV+ + + N + YE F+K
Sbjct: 99 EGNGKVMGAELRHVLTTLGEKMTEEEVETVL-AGHEDSNGCINYEAFLKH 147
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 114 bits (287), Expect = 2e-30
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 43/181 (23%)
Query: 267 EFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 322
+ ++ F LF R+G + +L + R LG++P ++ +
Sbjct: 10 DLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPRNEDVFA-VGG------------- 54
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAAD 381
L F +FL E + ++AFK D
Sbjct: 55 --------------------THKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 94
Query: 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS--KVRYEDFVKIACA-PVP 438
G + L+HVL GE LS ++VD+I + ++ + V+YEDFVK A P P
Sbjct: 95 REGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP 154
Query: 439 D 439
D
Sbjct: 155 D 155
Score = 44.8 bits (107), Expect = 7e-06
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 264 PYLEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE------KGGKLS 315
+ ++ E F F R G I + EL ++ +LG + ++ + + G +
Sbjct: 82 TFADYMEAFKTFDREGQGFI-SGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVK 140
Query: 316 FPDFLKVM 323
+ DF+K +
Sbjct: 141 YEDFVKKV 148
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 115 bits (289), Expect = 2e-30
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 41/168 (24%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F L ++ G I + +++ SLG T EL +AE G ++F FL +
Sbjct: 58 EFKEAFQLIDQDKDGFI-SKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFG 116
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D +V+AF D E
Sbjct: 117 DRIAGTDEEDVIVNAFNLFD----------------------EG---------------- 138
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + LK L WGE S EVDQ EA + N + + F +I
Sbjct: 139 DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQI 186
Score = 42.7 bits (101), Expect = 8e-05
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 267 EFRECFFLFAR-NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
F LF +G + L + + G + E+ + L+E G + F +
Sbjct: 127 VIVNAFNLFDEGDGKC-KEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185
Query: 322 VMHTHSKAED 331
++ T E+
Sbjct: 186 IL-TKGAKEE 194
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 113 bits (285), Expect = 3e-30
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E RE F LF + GTI + EL V MR+LG P E+KK ++E
Sbjct: 7 EIREAFDLFDADGTGTI-DVKELKVAMRALGFEPKKEEIKKMISE--------------- 50
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D +GK++F DFL VM +D +E++ AFK D +
Sbjct: 51 ------------------IDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDE 92
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + K LK V GE L+ +E+ ++ EA+ + +V ++F++I
Sbjct: 93 TGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140
Score = 40.1 bits (95), Expect = 3e-04
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E + F LF G I + L + + LG + T EL++ M
Sbjct: 80 EILKAFKLFDDDETGKI-SFKNLKRVAKELGENLTDEELQE-----------------M- 120
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
AD G++S +FL++M
Sbjct: 121 ---------------IDEADRDGDGEVSEQEFLRIM 141
Score = 39.4 bits (93), Expect = 4e-04
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
+E+ +AF D +GT+ K LK + G +E+ ++ E + K+ + DF+
Sbjct: 6 QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFL 65
Query: 431 KIA 433
+
Sbjct: 66 TVM 68
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 113 bits (285), Expect = 4e-30
Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 41/169 (24%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLG-MSPTIAELKKYLAEKGGKLSFPDFLKVM 323
+F+E F + +N G I D+L ++G ++ EL + E G ++F FL +
Sbjct: 26 DFKEAFTVIDQNADGII-DKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMF 84
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
K D P++ ++ AFK D
Sbjct: 85 GEKLKGAD-PED------------------------------------VIMGAFKVLDPD 107
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G++ +L+ +L G + +E+ ++ + V Y++ +
Sbjct: 108 GKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYV 156
Score = 44.5 bits (106), Expect = 1e-05
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
F + G+I L ++ + G T E+K A G + + +
Sbjct: 96 VIMGAFKVLDPDGKGSI-KKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNIC 154
Query: 321 KVMHTHSKAED 331
V+ TH + +
Sbjct: 155 YVI-THGEDAE 164
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 112 bits (283), Expect = 7e-30
Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 41/168 (24%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E +E F + + G + + +++ I LG +P EL L E G L+F FL +
Sbjct: 19 EMKEAFSMIDVDRDGFV-SKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFS 77
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D +E + +AF D +
Sbjct: 78 DKLSGTD-SEE------------------------------------TIRNAFAMFDEQE 100
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ + +Y+K +L N G+ + E+ F+EA V K Y F +
Sbjct: 101 TKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAM 147
Score = 48.3 bits (116), Expect = 5e-07
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---KGGKLSFPDFLK 321
R F +F + ++ + ++ ++G + E++ E +GGK + F
Sbjct: 88 TIRNAFAMFDEQETKKL-NIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGKFDYVKFTA 146
Query: 322 VMHTHSKAED 331
++ S E+
Sbjct: 147 MI-KGSGEEE 155
Score = 35.2 bits (82), Expect = 0.014
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 362 THSKAEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 417
+P++ + K A D + G V + +K + G KE+ + +EA
Sbjct: 5 ASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP 64
Query: 418 VTMNSKVRYEDFVKI 432
+N + F+ I
Sbjct: 65 GPLN----FTMFLSI 75
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 109 bits (275), Expect = 1e-28
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E E F LF N G + EL V M++LG E+ + E
Sbjct: 24 EIYEAFSLFDMNNDGFL-DYHELKVAMKALGFELPKREILDLIDE--------------- 67
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D+ + + DF VM D E+ AF+ D
Sbjct: 68 ------------------YDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDH 109
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + K L+ V GE L+ +E+ + E ++ + ++ +F+ I
Sbjct: 110 TGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
Score = 41.4 bits (98), Expect = 1e-04
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 358 KVMHTHSKAEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 413
+ + ++ +E A D G + LK + G L +E+ +
Sbjct: 6 SSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65
Query: 414 REANVTMNSKVRYEDFVKIA 433
E + ++Y+DF +
Sbjct: 66 DEYDSEGRHLMKYDDFYIVM 85
Score = 39.1 bits (92), Expect = 9e-04
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E + F LF G I ++ L + + LG + T EL+ M
Sbjct: 97 EIKRAFQLFDDDHTGKI-SIKNLRRVAKELGETLTDEELRA-----------------M- 137
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
+ D G+++ +F+ +
Sbjct: 138 ---------------IEEFDLDGDGEINENEFIAIC 158
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 108 bits (271), Expect = 4e-28
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E RE F LF + GTI EL V MR+LG P E+KK ++E
Sbjct: 29 EIREAFDLFDTDGSGTI-DAKELKVAMRALGFEPKKEEIKKMISE--------------- 72
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D SG + F +FL +M D +E++ AF+ D
Sbjct: 73 ------------------IDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDN 114
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
SGT+ K L+ V GE L+ +E+ ++ EA+ ++++ ++F++I
Sbjct: 115 SGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI 162
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
+E+ +AF DT SGT+ AK LK + G +E+ ++ E + + + +E+F+
Sbjct: 28 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFL 87
Query: 431 KIA 433
+
Sbjct: 88 TMM 90
Score = 39.5 bits (93), Expect = 5e-04
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E + F LF +GTI T+ +L + + LG + T EL++ +AE
Sbjct: 102 EILKAFRLFDDDNSGTI-TIKDLRRVAKELGENLTEEELQEMIAE--------------- 145
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
AD ++ +F+++M
Sbjct: 146 ------------------ADRNDDNEIDEDEFIRIM 163
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 114 bits (286), Expect = 6e-28
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + E
Sbjct: 313 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 356
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D +G + FP+FL +M K D +E+ +AF+ D
Sbjct: 357 ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 398
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + A L+HV+ N GE L+ +EVD++ REA++ + +V YE+FV++
Sbjct: 399 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 446
Score = 58.4 bits (141), Expect = 2e-09
Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 51/194 (26%)
Query: 244 YCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAEL 303
C S P + F P + + E ++ + G T AE+
Sbjct: 226 QCFSRYPDHMKQHDFFKSAMPE-GYIQ---------------ERTIFFKDDGNYKTRAEV 269
Query: 304 KKYLAE-----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
K + + F + ++ L+
Sbjct: 270 KFEGDTLVNRIELKGIDFKEDGNILG------------------------------HKLE 299
Query: 359 VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 418
E+ E +AF D GT+ K L V+ + G+ + E+ + E +
Sbjct: 300 YNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA 359
Query: 419 TMNSKVRYEDFVKI 432
N + + +F+ +
Sbjct: 360 DGNGTIDFPEFLTM 373
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 105 bits (265), Expect = 3e-27
Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF+ F +F + G I + EL +MR LG +PT EL + E
Sbjct: 21 EFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEE--------------- 64
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM---HTHSKAEDIPKEVVDAFKAAD 381
D SG + F +FL +M +E+ + F+ D
Sbjct: 65 ------------------VDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFD 106
Query: 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + + L +L GE ++ ++++ + ++++ + ++ +++F+K+
Sbjct: 107 KNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKM 157
Score = 40.3 bits (95), Expect = 3e-04
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E CF +F + +G I ++EL I+R+ G T +++ + +
Sbjct: 97 ELANCFRIFDKNADGFI-DIEELGEILRATGEHVTEEDIEDLMKD--------------- 140
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
+D G++ F +FLK+M
Sbjct: 141 ------------------SDKNNDGRIDFDEFLKMM 158
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 104 bits (263), Expect = 6e-27
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
EF+ F +F A +G+I + EL +MR LG +PT EL++ + E
Sbjct: 19 EFKAAFDIFVLGAEDGSI-STKELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP---KEVVDAFKAA 380
D SG + F +FL +M K + +E+ D F+
Sbjct: 64 -------------------VDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMF 104
Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
D G + + LK +L GE ++ +++++ ++ + + ++ Y++F++
Sbjct: 105 DKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
Score = 39.8 bits (94), Expect = 4e-04
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E + F +F + +G I L+EL +++++ G + T ++++ + +
Sbjct: 96 ELSDLFRMFDKNADGYI-DLEELKIMLQATGETITEDDIEELMKD--------------- 139
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
D G++ + +FL+ M
Sbjct: 140 ------------------GDKNNDGRIDYDEFLEFM 157
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 102 bits (257), Expect = 4e-26
Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 41/173 (23%)
Query: 267 EFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
F F +G + + D++ +I+ LG+ T + +++ + E
Sbjct: 14 LLETAFRDFETPEGSGRV-STDQIGIILEVLGIQQTKSTIRQLIDE-------------- 58
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM----HTHSKAEDIPKEVVDAFKA 379
D +G + F F + E + +E+ +AF+
Sbjct: 59 -------------------FDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRL 99
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
D +G + ++ +L E LSS+++D + E + + V +E+F+ +
Sbjct: 100 YDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
Score = 41.4 bits (98), Expect = 1e-04
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E RE F L+ + NG I + D + I+ L + + +L + E
Sbjct: 92 ELREAFRLYDKEGNGYI-STDVMREILAELDETLSSEDLDAMIDE--------------- 135
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
D SG + F +F+ VM
Sbjct: 136 ------------------IDADGSGTVDFEEFMGVM 153
Score = 38.7 bits (91), Expect = 0.001
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 364 SKAEDIPKEVVDAFKAA----DTT-KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 418
+ V + A +T SG V + +L G + + Q+ E +
Sbjct: 2 GDVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDP 61
Query: 419 TMNSKVRYEDFVKIA 433
N + ++ F I
Sbjct: 62 FGNGDIDFDSFKIIG 76
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 102 bits (256), Expect = 5e-26
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 41/173 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E RE F F ++ G I +L MR++G PT EL + +
Sbjct: 12 ELREAFREFDKDKDGYI-NCRDLGNCMRTMGYMPTEMELIELSQQ--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKAA 380
+ G + F DF+++M AE KE+ DAF+
Sbjct: 56 ------------------INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREF 97
Query: 381 DTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
DT G + L+ + G + +++++I R+ ++ + +V +E+FV++
Sbjct: 98 DTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150
Score = 39.8 bits (94), Expect = 4e-04
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
+E+ +AF+ D K G + + L + + G + E+ ++ ++ N+ + V ++DFV
Sbjct: 11 EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFV 70
Query: 431 KIA 433
++
Sbjct: 71 ELM 73
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 90.4 bits (225), Expect = 2e-21
Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 43/168 (25%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E E F + G I ++ EL+ + S G+ ++A +K L
Sbjct: 28 ELMEWFRAVDTDGSGAI-SVPELNAALSSAGVPFSLATTEKLLHM--------------- 71
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
D SG+++F +F + H + + F+ D++
Sbjct: 72 ------------------YDKNHSGEITFDEFKDLHHFI-------LSMREGFRKRDSSG 106
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + + ++ L++ G +S + + R+ + + ++D+V++
Sbjct: 107 DGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVEL 154
Score = 53.1 bits (128), Expect = 2e-08
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
RE F +G + +E+ + S G + +K+ ++ G L F D++
Sbjct: 94 SMREGFRKRDSSGDGRL-DSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYV 152
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
++ V + F D ++G+ +F F+
Sbjct: 153 ELSIFV-------CRVRNVFAFYDRERTGQVTFTFDTFIGGS 187
Score = 50.0 bits (120), Expect = 2e-07
Identities = 14/81 (17%), Positives = 35/81 (43%)
Query: 352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ 411
P V ++ + +E+++ F+A DT SG + L L + G S ++
Sbjct: 8 HMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEK 67
Query: 412 IFREANVTMNSKVRYEDFVKI 432
+ + + ++ +++F +
Sbjct: 68 LLHMYDKNHSGEITFDEFKDL 88
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 90.6 bits (225), Expect = 2e-21
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 46/183 (25%)
Query: 267 EFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLAEKGGKLSFPDF 319
+ F N G I TLDE+ I L +P + + E
Sbjct: 21 RHKHMFDFLDINGNGKI-TLDEIVSKASDDICAKLEATPEQTKRHQVCVE---------- 69
Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE----------DI 369
F+ +++FP FL + +E I
Sbjct: 70 -----------------AF-FRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLI 111
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDF 429
+ F D SGT+ K G S ++ + FR ++ + ++
Sbjct: 112 REWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEM 171
Query: 430 VKI 432
+
Sbjct: 172 TRQ 174
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
F +F + +GTI TLDE + G+SP+ + +
Sbjct: 114 WGDAVFDIFDKDGSGTI-TLDEWKAYGKISGISPSQEDCE-------------------- 152
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
F+ D +G L + +
Sbjct: 153 -------------ATFRHCDLDNAGDLDVDEMTRQH 175
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 90.0 bits (224), Expect = 2e-21
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 39/168 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+E F + + GTI T DEL ++ +G +E+K +
Sbjct: 11 GLKELFKMIDTDNSGTI-TFDELKDGLKRVGSELMESEIKDLMDA--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
AD KSG + + +F+ H + + +V AF D
Sbjct: 55 ------------------ADIDKSGTIDYGEFIAAT-VHLNKLEREENLVSAFSYFDKDG 95
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
SG + ++ + GL +D + +E + + ++ Y +F +
Sbjct: 96 SGYITLDEIQQACKD--FGLDDIHIDDMIKEIDQDNDGQIDYGEFAAM 141
Score = 41.8 bits (99), Expect = 1e-04
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 366 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
AE + +E + K DT SGT+ LK L G L E+ + A++ +
Sbjct: 1 AERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS 60
Query: 422 SKVRYEDFV 430
+ Y +F+
Sbjct: 61 GTIDYGEFI 69
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 91.9 bits (228), Expect = 3e-21
Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 46/184 (25%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+F E + F + G + EL +++ L + A L
Sbjct: 17 QFFEIWLHFDADGSGYL-EGKELQNLIQELLQARKKAGL--------------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT--------HSKAEDIPKEVVDA 376
++ E+ GK+ + V+ T + +E +
Sbjct: 55 ------ELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKT 108
Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSS--------KEVDQIFREANVTMNSKVRYED 428
++ DT SG + + LK+ L + E + + D + + + + K+ +
Sbjct: 109 WRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTE 168
Query: 429 FVKI 432
++
Sbjct: 169 MARL 172
Score = 67.2 bits (164), Expect = 8e-13
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 40/183 (21%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
EF + + + +G I +EL ++ L LAE
Sbjct: 104 EFMKTWRKYDTDHSGFI-ETEELKNFLKDLLEKANKTVDDTKLAE--------------- 147
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT-------HSKAEDIPKEVVDAF 377
K D+ GKL + +++ + KE AF
Sbjct: 148 ----------YTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAF 197
Query: 378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS-----KVRYEDFVKI 432
+ D +G + L +L + E + + + K+ D I
Sbjct: 198 ELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALI 257
Query: 433 ACA 435
A
Sbjct: 258 LSA 260
Score = 35.6 bits (82), Expect = 0.024
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 360 MHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS------SKEVDQIF 413
H S + + + D SG + K L++++ + S E+
Sbjct: 6 SHLQSSLITA-SQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFV 64
Query: 414 REANVTMNSKVRYEDFVKI 432
+ + K+ + +
Sbjct: 65 DQYGQRDDGKIGIVELAHV 83
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 93.0 bits (231), Expect = 3e-21
Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 43/201 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
R+ F A + G + +L ++ + LKK G++S+ +
Sbjct: 123 ILRQLFLSSAVSGSGKF-SFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLV 181
Query: 321 KVMHTH------------------SKAE----------DIPKEVVDAFKAADTTKSGKLS 352
V + S+ E D F+ AD +S +
Sbjct: 182 AVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVG 241
Query: 353 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQ 411
F +++ + + AD KSG + + ++ VL + + K+ +
Sbjct: 242 FSEYVHLGLCLLVLRI-------LYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEH 294
Query: 412 IFREANVTMNSKVRYEDFVKI 432
F +V + + Y++FV +
Sbjct: 295 QFSVVDVDDSKSLSYQEFVML 315
Score = 52.5 bits (126), Expect = 8e-08
Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 7/133 (5%)
Query: 300 IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDI--PKEVVDAFKAADTTKSGKLSFPDFL 357
A+L +Y + + + + ++ + + + K + SG L
Sbjct: 54 KAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNR----L 109
Query: 358 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 417
+ ED + F ++ + SG + LK VL + + + + ++F
Sbjct: 110 RPSKPMLSEEDT-NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVE 168
Query: 418 VTMNSKVRYEDFV 430
++ Y V
Sbjct: 169 NDTKGRMSYITLV 181
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 88.3 bits (219), Expect = 1e-20
Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 44/181 (24%)
Query: 267 EFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLAE---------K 310
+ F N G I +LDE+ +++ +LG +P A+ K E
Sbjct: 17 RHKHMFNFLDVNHNGKI-SLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKY 75
Query: 311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP 370
G + +P +++ + E + I
Sbjct: 76 GVETDWPAYIEGWKKLATDELEKYAKNEP---------------------------TLIR 108
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
F D ++G + K G SS++ ++ FR ++ + ++ ++
Sbjct: 109 IWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMT 168
Query: 431 K 431
+
Sbjct: 169 R 169
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 36/96 (37%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
F + + NG I TLDE ++ G+ +
Sbjct: 110 WGDALFDIVDKDQNGAI-TLDEWKAYTKAAGIIQS------------------------- 143
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
++ + F+ D +SG+L + +
Sbjct: 144 --------SEDCEETFRVCDIDESGQLDVDEMTRQH 171
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 86.8 bits (216), Expect = 2e-20
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 39/168 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+E F + + G I T +EL ++ +G + +E+ +
Sbjct: 28 GLKEMFNMIDADKSGQI-TFEELKAGLKRVGANLKESEILDLMQA--------------- 71
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
AD SG + + +F+ H + + AF D
Sbjct: 72 ------------------ADVDNSGTIDYKEFIAAT-LHLNKIEREDHLFAAFTYFDKDG 112
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
SG + L+ G+ ++++ R+ + + ++ Y +FV +
Sbjct: 113 SGYITPDELQQACEE--FGVEDVRIEELMRDVDQDNDGRIDYNEFVAM 158
Score = 44.8 bits (107), Expect = 8e-06
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
L+V+ E+I + + F D KSG + + LK L G L E+ + + A
Sbjct: 14 LRVIAESLSEEEI-AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAA 72
Query: 417 NVTMNSKVRYEDFV 430
+V + + Y++F+
Sbjct: 73 DVDNSGTIDYKEFI 86
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 84.9 bits (211), Expect = 2e-19
Identities = 23/170 (13%), Positives = 57/170 (33%), Gaps = 39/170 (22%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
R F + GT+ + E+ ++ +G ++
Sbjct: 58 NLRNIFIALDVDNSGTL-SSQEILDGLKKIGYQKIPPDIH-------------------- 96
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+ D+ SG++ + DFL + + + FK D
Sbjct: 97 -------------QVLRDIDSNASGQIHYTDFLAAT-IDKQTYLKKEVCLIPFKFFDIDG 142
Query: 385 SGTVPAKYLKHVLV--NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+G + + LK + + L K +D + +E ++ + ++ + +F+ +
Sbjct: 143 NGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
Score = 48.7 bits (117), Expect = 6e-07
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
L ++ H +I + + F A D SGT+ ++ + L G ++ Q+ R+
Sbjct: 44 LTIIAKHLCDVEI-NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDI 102
Query: 417 NVTMNSKVRYEDFVKIA 433
+ + ++ Y DF+
Sbjct: 103 DSNASGQIHYTDFLAAT 119
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 80.0 bits (198), Expect = 7e-18
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 44/169 (26%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSP-TIAELKKYLAEKGGKLSFPDFLKVM 323
F ++ G I + EL + + +P ++ ++
Sbjct: 8 FLWNVFQRVDKDRSGVI-SDTELQQALSNGTWTPFNPVTVRSIISM-------------- 52
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
D ++F +F V + + F+ D
Sbjct: 53 -------------------FDRENKAGVNFSEFTGVWKY-------ITDWQNVFRTYDRD 86
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
SG + LK L +G LS + D + R+ + ++ ++DF++
Sbjct: 87 NSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 135
Score = 48.0 bits (115), Expect = 7e-07
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
+++ F + +G I +EL + G + +K+ + G+++F DF+
Sbjct: 75 DWQNVFRTYDRDNSGMI-DKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 133
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
+ + + D F+ DT + G +S+ +L ++
Sbjct: 134 QGCIV-------LQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 168
Score = 36.4 bits (85), Expect = 0.007
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYED 428
+ + F+ D +SG + L+ L N + V I + + V + +
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 65
Query: 429 FV 430
F
Sbjct: 66 FT 67
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 78.4 bits (194), Expect = 2e-17
Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 45/173 (26%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ F + G++ +++E + L +P + +
Sbjct: 7 RLGKRFKKLDLDNSGSL-SVEEFMS-LPELQQNPLVQRV--------------------- 43
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
DT +G++ F +F++ + S D +++ AF+ D K
Sbjct: 44 ---------------IDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDK 88
Query: 385 SGTVPAKYLKHVLVN-WGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKI 432
G + L VL G L + VD+ A+ + ++ +E+F +
Sbjct: 89 DGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAV 141
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 77.6 bits (192), Expect = 2e-17
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 42/168 (25%)
Query: 269 RECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
F N G + + +E+ + L+
Sbjct: 3 EALFKEIDVNGDGAV-SYEEVKAFVSKKRAIKNEQLLQ---------------------- 39
Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKE--VVDAFKAADTTK 384
FK+ D +G++ +F K + + + + +K D
Sbjct: 40 -----------LIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDG 88
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + + + G ++V + +A+ + + E+F++
Sbjct: 89 DGKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLEEFLEF 132
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 79.3 bits (196), Expect = 2e-17
Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 45/176 (25%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
F R+ ++ DE + LG+ AE +
Sbjct: 38 GLARFFRQLDRDGSRSL-DADEFRQGLAKLGLVLDQAEAE-------------------- 76
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+ D SG L +FL+ + ++ + AF D +
Sbjct: 77 -------------GVCRKWDRNGSGTLDLEEFLRAL-RPPMSQAREAVIAAAFAKLDRSG 122
Query: 385 SGTVPAKYLK-------HVLVNWGEGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 432
G V L+ H V GE + + + + + +V +F
Sbjct: 123 DGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDY 178
Score = 41.6 bits (98), Expect = 2e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 355 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 414
+ L+ A I + + F+ D S ++ A + L G L E + + R
Sbjct: 22 EKLRAQCLSRGASGI-QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCR 80
Query: 415 EANVTMNSKVRYEDFVKI 432
+ + + + E+F++
Sbjct: 81 KWDRNGSGTLDLEEFLRA 98
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 77.9 bits (193), Expect = 3e-17
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 2/79 (2%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L LT L +G L L L + + + L L
Sbjct: 76 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT--ELKAAVGELPEKSKLQEIYQELTQ 133
Query: 144 LPGFLLSMPQLDTVYRHGN 162
L + +P +
Sbjct: 134 LKAAVGELPDQSKQQQIYQ 152
Score = 77.1 bits (191), Expect = 6e-17
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L LT L +G L L L + + + L L
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTR 64
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
L + +P+ +
Sbjct: 65 LKAAVGELPEKSKLQEIYQE 84
Score = 76.7 bits (190), Expect = 7e-17
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L LT L +G L L L + + + L L
Sbjct: 30 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTR 87
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
L + +P+ +
Sbjct: 88 LKAAVGELPEKSKLQEIYQE 107
Score = 74.0 bits (183), Expect = 6e-16
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L LT L +G L L L + + + L L
Sbjct: 53 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTE 110
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
L + +P+ +
Sbjct: 111 LKAAVGELPEKSKLQEIYQE 130
Score = 73.3 bits (181), Expect = 1e-15
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 2/69 (2%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + L LT L +G L L L + + + +
Sbjct: 92 VGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELT--QLKAAVGELPDQSKQQQ 149
Query: 137 DNNLLDALP 145
L L
Sbjct: 150 IYQELTDLK 158
Score = 50.2 bits (121), Expect = 1e-07
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRH 160
G L L L + + + L L L + +P+ +
Sbjct: 1 GELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 58
Query: 161 GNH 163
Sbjct: 59 YQE 61
Score = 36.7 bits (86), Expect = 0.005
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTN 105
+ + LT L RL +
Sbjct: 138 VGELPDQSKQQQIYQELTDLKTAFERLGH 166
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 77.3 bits (191), Expect = 1e-16
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 44/173 (25%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ + F + + G I T ++L + G
Sbjct: 53 KLKSTFLVLDEDGKGYI-TKEQLKKGLEKDG----------------------------- 82
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+P D+ SGK+ + +F+ + K + AF+ D
Sbjct: 83 -----LKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSK--KLIYCAFRVFDVDN 135
Query: 385 SGTVPAKYLKHVLVNWGEGLSS-----KEVDQIFREANVTMNSKVRYEDFVKI 432
G + L H+L N + + V ++ R+ + + K+ + +F ++
Sbjct: 136 DGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188
Score = 34.1 bits (79), Expect = 0.045
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 31/96 (32%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
F +F +G I T EL+ I+ + I +
Sbjct: 123 LIYCAFRVFDVDNDGEI-TTAELAHILYNGNKKGNITQRD-------------------- 161
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
V + D GK+ F +F ++M
Sbjct: 162 --------VNRVKRMIRDVDKNNDGKIDFHEFSEMM 189
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 76.3 bits (188), Expect = 1e-16
Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 29/174 (16%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
F F ++ G I + S +++ +A + +
Sbjct: 5 RIAARFTTFDQDGNGHI-DRSDFSGAAKAMLAEFGVAARSDRGQAL--YGGAEALWQGL- 60
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK------AEDIPKEVVDAFK 378
AD +++ +F+ + AE + A
Sbjct: 61 ---------------AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALG 105
Query: 379 AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
ADT G V L + G+ Q + + KV + V
Sbjct: 106 VADTDGDGAVTVADTARALTAF--GVPEDLARQAAAALDTDGDGKVGETEIVPA 157
Score = 37.4 bits (87), Expect = 0.003
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 278 NGTIKTLDE-LSVIMRSLGMSPTIAE--LKKYLAE--------KGGKLSFPDFLKVMHTH 326
+ I T +E ++ ++ L P + +L G ++ D + +
Sbjct: 69 DQRI-TREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAF 127
Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
ED A A DT GK+ + +
Sbjct: 128 GVPED---LARQAAAALDTDGDGKVGETEIVPAFA 159
Score = 27.8 bits (62), Expect = 5.3
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 15/78 (19%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV---------------DQIFRE 415
+ + F D +G + +
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 416 ANVTMNSKVRYEDFVKIA 433
A+ + ++ E+FV A
Sbjct: 64 ADRDGDQRITREEFVTGA 81
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 73.8 bits (182), Expect = 1e-16
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
E++E F LF ++ + T +EL +MR+LG +PT ++ + + + GK FL
Sbjct: 15 EYKEAFQLFDKDNDNKL-TAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFL 73
Query: 321 KVMHTHSKAED 331
+M + + D
Sbjct: 74 TIMLEYGQEVD 84
Score = 44.2 bits (105), Expect = 3e-06
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 364 SKAEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT 419
+ + + E +K A D + A+ L V+ G + +++ +I ++ +
Sbjct: 3 EQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKD 62
Query: 420 MNSKVRYEDFVKI 432
+ K E F+ I
Sbjct: 63 NSGKFDQETFLTI 75
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 77.2 bits (190), Expect = 1e-16
Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 43/180 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLG--MSPTIAELKKYLAEKGGKLSFPDFLKV 322
+ F F + G + +DE+ + ++ T +++K
Sbjct: 37 RLYKRFDTFDLDSDGKM-EMDEVLYWPDRMRQLVNATDEQVEKMRDA------------- 82
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEV--------- 373
V F L D+++ ++AE +
Sbjct: 83 -------------VRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALL 129
Query: 374 -VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ D GTV LK ++ + + + F +A+ + K+ + V +
Sbjct: 130 SNSYYDVLDDDGDGTVDVDELKTMMKAF--DVPQEAAYTFFEKADTDKSGKLERTELVHL 187
Score = 37.5 bits (87), Expect = 0.004
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 36/85 (42%)
Query: 277 RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV 336
+GT+ +DEL +M++ + A
Sbjct: 141 GDGTV-DVDELKTMMKAFDVPQEAAY---------------------------------- 165
Query: 337 VDAFKAADTTKSGKLSFPDFLKVMH 361
F+ ADT KSGKL + + +
Sbjct: 166 -TFFEKADTDKSGKLERTELVHLFR 189
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 75.9 bits (187), Expect = 2e-16
Identities = 20/174 (11%), Positives = 47/174 (27%), Gaps = 33/174 (18%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ + G I + ++ +I + ++
Sbjct: 15 KMKTRMQRVDVTGDGFI-SREDYELIAVRIAKIAKLSA---------------------- 51
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV------DAFK 378
KAE+ +E + ++S + ++ + +
Sbjct: 52 --EKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYD 109
Query: 379 AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
DT K G V K L G L+ + F + N ++ ++F+
Sbjct: 110 CIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVT 163
Score = 41.3 bits (97), Expect = 2e-04
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 13/102 (12%)
Query: 278 NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG----------GKLSFPDFLKVMHTHS 327
I + SL + + G +S P+F +
Sbjct: 73 GVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVG 132
Query: 328 KAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHSKAED 368
D+ + F D K+G++S +FL ++ +
Sbjct: 133 --PDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLE 172
Score = 29.3 bits (66), Expect = 1.8
Identities = 7/72 (9%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS---------SKEVDQIFREANVTMN 421
+++ + D T G + + + + V + +E ++ + +
Sbjct: 14 RKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPG 73
Query: 422 SKVRYEDFVKIA 433
++ E+ A
Sbjct: 74 VRISVEEAAVNA 85
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 75.0 bits (185), Expect = 4e-16
Identities = 21/176 (11%), Positives = 55/176 (31%), Gaps = 50/176 (28%)
Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E F+ NG++ + E+ ++ S+G+
Sbjct: 40 YINELFYKLDTNHNGSL-SHREIYTVLASVGIKKW------------------------- 73
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
++ +A D G +++ +F+ + E + AF D +
Sbjct: 74 ----------DINRILQALDINDRGNITYTEFMAGCYRWKNIES--TFLKAAFNKIDKDE 121
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA--------NVTMNSKVRYEDFVKI 432
G + + ++ + L + ++D F + +K+ +++F
Sbjct: 122 DGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDY 175
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 73.9 bits (182), Expect = 4e-16
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYL 393
+T + + D L VM E+ E+ F + + A+ L
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62
Query: 394 KHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ G EG+S ++ + RE ++ + + +F +
Sbjct: 63 RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 75.9 bits (186), Expect = 1e-15
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 46/187 (24%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
F + + F + G I EL R + K+
Sbjct: 12 GFLQIWQHFDADDNGYI-EGKELDDFFRHMLK------------------------KLQP 46
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMHT----------HSKAEDIPKEV 373
++ +++ +F A D T G+L + ++ D E
Sbjct: 47 KDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEF 106
Query: 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK--------EVDQIFREANVTMNSKVR 425
+ ++ D SG + A LK+ L + K D + + + + ++
Sbjct: 107 MKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLD 166
Query: 426 YEDFVKI 432
D +I
Sbjct: 167 LNDLARI 173
Score = 56.6 bits (136), Expect = 4e-09
Identities = 21/186 (11%), Positives = 55/186 (29%), Gaps = 45/186 (24%)
Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
EF + + + + + + EL ++ L + L E
Sbjct: 105 EFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDE---------------- 148
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT-----------HSKAEDIPKEVV 374
K D K G+L D +++ S + ++
Sbjct: 149 ---------YTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFE 199
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGE----GLSSKEVDQ----IFREANVTMNSKVRY 426
F D +++G + + + + E +S ++D+ + ++ + K++
Sbjct: 200 KIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQK 259
Query: 427 EDFVKI 432
+
Sbjct: 260 SELALC 265
Score = 31.6 bits (71), Expect = 0.49
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 26/95 (27%)
Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
+F + F + + T E+ ++ + V +
Sbjct: 197 DFEKIFAHYDVSRTGALEGPEVDGFVKDMME------------------------LVRPS 232
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
S D+ K D K GK+ + +
Sbjct: 233 ISG-GDLDKFRECLLTHCDMNKDGKIQKSELALCL 266
Score = 29.6 bits (66), Expect = 1.8
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----------VDQIFRE 415
A + ++ D +G + K L + + L K+
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 416 ANVTMNSKVRYEDFVKI 432
+ T + +++ E+ +
Sbjct: 66 YDATFDGRLQIEELANM 82
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 73.1 bits (180), Expect = 3e-15
Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 50/179 (27%)
Query: 267 EFRECFFLFARN--GTIKTLDELSV-----------IMRSLGMSPTIAELKKYLAEKGGK 313
E + F N G + EL + L S AE+
Sbjct: 41 ELTQIFRQLDNNGDGQL-DRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD--------- 90
Query: 314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEV 373
++ D ++G + + +F+ V + + +
Sbjct: 91 ------------------------HILQSVDFDRNGYIEYSEFVTVC-MDKQLLLSRERL 125
Query: 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ AF+ D+ SG + + L + + + Q+ +E + + +V +E+FV++
Sbjct: 126 LAAFQQFDSDGSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 356 FLKVMHTH-SKAEDIPKEVVDAFKAADTTKSGTVPAKYLK-----------HVLVNWGEG 403
+ M + + E+ KE+ F+ D G + K L + +
Sbjct: 25 AMLFMGSKLTTLEET-KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSS 83
Query: 404 LSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
EVD I + + N + Y +FV +
Sbjct: 84 QIEAEVDHILQSVDFDRNGYIEYSEFVTVC 113
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 70.3 bits (173), Expect = 4e-15
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%)
Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV 374
+ D LK ++ A A G + F ++ + + + +V
Sbjct: 2 AAKDLLK-----------ADDIKKALDAVK--AEGSFNHKKFFALVGLKAMSAN---DVK 45
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
FKA D SG + + LK VL + G L+ E + A+ + K+ ++F
Sbjct: 46 KVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET 105
Query: 432 I 432
+
Sbjct: 106 L 106
Score = 35.6 bits (83), Expect = 0.005
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 35/97 (36%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ ++ F +G I +EL +++S
Sbjct: 43 DVKKVFKAIDADASGFI-EEEELKFVLKSFAAD--------------------------- 74
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVM 360
D+ AF KAAD GK+ +F ++
Sbjct: 75 ----GRDLTDAETKAFLKAADKDGDGKIGIDEFETLV 107
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 71.7 bits (176), Expect = 5e-15
Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 38/178 (21%)
Query: 267 EFRECFFLFARN--GTIKTLDELSV----IMRSLGMSPTIAELKKYLAEKGGKLSFPDFL 320
++ F + + G + + I + G AE++ +F
Sbjct: 8 RLKKRFDRWDFDGNGAL-ERADFEKEAQHIAEAFGKDAGAAEVQTLKN------AFGGLF 60
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED-------IPKEV 373
+ K A G L+ F++V + + V
Sbjct: 61 DYL----------------AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVV 104
Query: 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
D G + A L G+S E + F + + N ++ ++ +
Sbjct: 105 KGIVGMCDKNADGQINADEFAAWLTAL--GMSKAEAAEAFNQVDTNGNGELSLDELLT 160
Score = 37.8 bits (88), Expect = 0.003
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 278 NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE------------KGGKLSFPDFLKVMHT 325
+G++ T ++ + +L A + L G+++ +F +
Sbjct: 72 DGSL-TEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTA 130
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
++ E +AF DT +G+LS + L +
Sbjct: 131 LGMSKA---EAAEAFNQVDTNGNGELSLDELLTAVR 163
Score = 27.4 bits (61), Expect = 6.4
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 15/78 (19%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNW----GEGLSSKEV-----------DQIFRE 415
+ F D +G + + + G+ + EV D + +E
Sbjct: 7 DRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKE 66
Query: 416 ANVTMNSKVRYEDFVKIA 433
A V + + E F+++
Sbjct: 67 AGVGSDGSLTEEQFIRVT 84
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 68.8 bits (169), Expect = 8e-15
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
EF+ F +F G I + EL +MR LG +PT EL + E G + F +FL
Sbjct: 21 EFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 79
Query: 321 KVMHTHSKAE 330
+M K +
Sbjct: 80 VMMVRQMKED 89
Score = 45.7 bits (109), Expect = 9e-07
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
E++ E AF D G + K L V+ G+ + +E+D I E + + + +
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Query: 427 EDFVKI 432
E+F+ +
Sbjct: 76 EEFLVM 81
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 68.1 bits (167), Expect = 1e-14
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 350 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 409
S + L + K D +E+ +AF+ D +G + A L+HV+ N GE L+ +EV
Sbjct: 9 HGSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEV 67
Query: 410 DQIFREANVTMNSKVRYEDFVKI 432
D++ REA++ + +V YE+FV++
Sbjct: 68 DEMIREADIDGDGQVNYEEFVQM 90
Score = 48.8 bits (117), Expect = 8e-08
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
E RE F + + NG I + EL +M +LG T E+ + + E G++++ +F+
Sbjct: 30 EIREAFRVEDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 88
Query: 321 KVM 323
++M
Sbjct: 89 QMM 91
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 67.5 bits (166), Expect = 1e-14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
E +E F LF + G+I EL V MR+LG E+ + + E G + F DFL
Sbjct: 8 EIKEAFDLFDTNKTGSI-DYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL 66
Query: 321 KVMHTHSKAED 331
+M K D
Sbjct: 67 DIMTEKIKNRD 77
Score = 46.7 bits (112), Expect = 3e-07
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
+E+ +AF DT K+G++ LK + G + E+ ++ E + N + ++DF+
Sbjct: 7 QEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL 66
Query: 431 KI 432
I
Sbjct: 67 DI 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 71.1 bits (175), Expect = 7e-14
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 66 LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L L P+ + + F+ ++ +++ + L LP + + L L L N L+ ++P
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALP 143
Query: 123 FTLTFCKNLTHLYL-DNNLLDALP 145
++ L L + L LP
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
Score = 69.2 bits (170), Expect = 4e-13
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLD 142
+ L L+ + SLP I L NL+ L + ++ L ++ + L L L L
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALR 243
Query: 143 ALPGFLLSMPQLDTVY-RHGNH 163
P L + + ++
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSN 265
Score = 68.0 bits (167), Expect = 8e-13
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN--------CLQNASIPFTLTFCKNLTHLY 135
E L+L N L +LP I L LR L + L + NL L
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 136 LDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L+ + +LP + ++ L ++ +
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSP 217
Score = 66.1 bits (162), Expect = 4e-12
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 77 IFKCDTVEVLSLKS-NSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
++ L LK ++L +LP DI RLT L L L C+ + +P + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQLPANCIIL 307
Query: 136 LDNNLLDALPGFLL-SMP 152
+ +L L + P
Sbjct: 308 VPPHLQAQLDQHRPVARP 325
Score = 58.0 bits (141), Expect = 2e-09
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 84 EVLSLKSNSLTSLPPDIGRLT--NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
++ + +L + + T L L L P +L H+ +D L
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGL 116
Query: 142 DALPGFLLSMPQL 154
LP + L
Sbjct: 117 MELPDTMQQFAGL 129
Score = 44.6 bits (106), Expect = 3e-05
Identities = 9/82 (10%), Positives = 18/82 (21%), Gaps = 4/82 (4%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLL 141
+ + N ++ T L+ + L L L + L
Sbjct: 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALK--ATADLLEDATQPGRVALELRSVPL 93
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
P + L +
Sbjct: 94 PQFPDQAFRLSHLQHMTIDAAG 115
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 69.0 bits (169), Expect = 9e-14
Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 39/167 (23%)
Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
F A ++G I DEL + G++ + ++M
Sbjct: 34 PLYGYFAAVAGQDGQI-DADELQRCLTQSGIAGGYKPFN------------LETCRLM-- 78
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
V D SG + F +F ++ F + DT +S
Sbjct: 79 -----------VSML---DRDMSGTMGFNEFKELWAVL-------NGWRQHFISFDTDRS 117
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
GTV + L+ L G LS + V+ I + + N K+ ++D++
Sbjct: 118 GTVDPQELQKALTTMGFRLSPQAVNSIAKRYST--NGKITFDDYIAC 162
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 72.0 bits (177), Expect = 1e-13
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 66 LSLSYT-----PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
+ + Y P+ + K + +L N L P G L L L N +
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--E 367
Query: 121 IPFTL-TFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
IP F + + +L +N L +P S+ + + N
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Score = 67.0 bits (164), Expect = 4e-12
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 28/136 (20%)
Query: 56 IPQYFSHAFLLSLSY---------TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNL 106
Y L I + + SN++T + + RLT L
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208
Query: 107 RVLCLTDN------------------CLQNASIPFTLTFCKNLTHLYL-DNNLLDALPGF 147
R + ++ Q + K+LT + + + L LP F
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268
Query: 148 LLSMPQLDTVYRHGNH 163
L ++P++ + N
Sbjct: 269 LKALPEMQLINVACNR 284
Score = 65.1 bits (159), Expect = 2e-11
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA-----SI 121
L+ R + + L NS + P + L+ + +
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
P +T C +LT L + +N + + +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITP 587
Score = 63.1 bits (154), Expect = 7e-11
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 79 KCDTVEVLSLKSNSLTSLPPD--------IGRLTNLRVLCLTDNCLQNASIP--FTLTFC 128
+ ++L N LT +P + L + L N L + F T
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTL 512
Query: 129 KNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164
L + L N P L+ L +
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Score = 62.4 bits (152), Expect = 1e-10
Identities = 18/95 (18%), Positives = 25/95 (26%), Gaps = 11/95 (11%)
Query: 69 SYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDI--GRLTNLRVLCLTDNCLQNASIPFTLT 126
S + + L+ N LT L D L L + L+ N P
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS--KFPTQPL 533
Query: 127 FCKNLTHLYL-------DNNLLDALPGFLLSMPQL 154
L + N L P + P L
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568
Score = 61.6 bits (150), Expect = 2e-10
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L+L N +T +P + G + L N L+ F ++ + N +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 143 ALPGFLLS 150
++ G
Sbjct: 416 SVDGKNFD 423
Score = 58.9 bits (143), Expect = 1e-09
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTS--------LPPDIGRLTNLRVLCLTDNCLQN 118
L Y P + + N + S L P + N+ + L++N +
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
+ L+ + L N+L +P L
Sbjct: 448 -FPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478
Score = 58.9 bits (143), Expect = 2e-09
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNS-------LTSLPPDIGRLTNLRVLCLTDNC 115
+ LSY + + T++ +++ L P I +L L + N
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 116 LQNASIPFTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQLDTVYRHGNHN 164
++ + + N++ L + DN + ++ + +
Sbjct: 578 IR--KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
Score = 58.9 bits (143), Expect = 2e-09
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 64 FLLSLSYTPIGRRIFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQ----- 117
+ Y + + + + + LT LP + L ++++ + N
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291
Query: 118 --NASIPFTLTFCKNLTHLYLDNNLLDALP 145
+ + + +Y+ N L P
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFP 321
Score = 57.0 bits (138), Expect = 6e-09
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL-YLDNNL 140
V LSL+ + +P IG+LT L VL L + + F
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 141 LDALPGFLLSMPQLDT 156
+ F+ P+ D
Sbjct: 143 MHYQKTFVDYDPREDF 158
Score = 57.0 bits (138), Expect = 7e-09
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 77 IFKCDTVEVLSLKSNSLTSLP---------PDIGRLTNLRVLCLTDNCLQNASIPFTLTF 127
+ ++++++ N S D ++++ + N L+ + +L
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328
Query: 128 CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
K L L N L+ S +L ++ N
Sbjct: 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Score = 56.2 bits (136), Expect = 1e-08
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 10/111 (9%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT 124
+ +P C+ E + + + L +L + + NC +P
Sbjct: 211 FYMGNSPFVAENI-CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-NCPNLTKLPTF 268
Query: 125 LTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN-------HNYFKS 168
L + + + N + L +N K+
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Score = 45.0 bits (107), Expect = 4e-05
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 58 QYFSHAFLLSLSY----TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTD 113
+ F I C ++ L + SN + + I N+ VL + D
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKD 596
Query: 114 NCLQNASIPFTLTFCK--NLTHLYLDNNLLDALPG 146
N N SI + C L + + G
Sbjct: 597 N--PNISIDLS-YVCPYIEAGMYMLFYDKTQDIRG 628
Score = 43.1 bits (102), Expect = 1e-04
Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 6/109 (5%)
Query: 59 YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN 118
+ I + E + L +C+ +
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCINS 168
Query: 119 ----ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
SI + T + +N + + ++ + +L Y +
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217
Score = 36.6 bits (85), Expect = 0.015
Identities = 6/57 (10%), Positives = 14/57 (24%), Gaps = 3/57 (5%)
Query: 100 IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL--DALPGFLLSMPQL 154
+ + L L +P + L L L ++ + +
Sbjct: 77 LNSNGRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 65.9 bits (161), Expect = 1e-13
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
F+E + F NG I + L ++ LG+ T ELKK + E G S+PDFL
Sbjct: 33 GFKEKYMEFDLNGNGDI-DIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFL 91
Query: 321 KVM 323
++M
Sbjct: 92 RMM 94
Score = 44.7 bits (106), Expect = 3e-06
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399
+ D L P + SK E KE + D +G + LK +L
Sbjct: 5 EERLDEINKQFLDDPKYSSDEDLPSKLEGF-KE---KYMEFDLNGNGDIDIMSLKRMLEK 60
Query: 400 WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
G + E+ ++ E + Y DF+++
Sbjct: 61 LGVPKTHLELKKLIGEVSSGSGETFSYPDFLRM 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 70.0 bits (172), Expect = 2e-13
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-- 141
+ L L SN L + P+ + + L +N L I L F +NL H L N
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC 251
Query: 142 DALPGFLLSMPQLDTVYRHGNHN 164
L F ++ TV +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKK 274
Score = 63.9 bits (156), Expect = 2e-11
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+ L LK N + ++ L L L N + + L L L +N L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVK-GQVVFAKLKTLDLSSNKL 203
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
+ S + + N
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK 225
Score = 61.5 bits (150), Expect = 1e-10
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 66 LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASI 121
L + I R + + + L +N +T L G + ++ L L N + +
Sbjct: 104 LHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L HL L N + + G + +L T+ N
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK 202
Score = 59.6 bits (145), Expect = 5e-10
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
++ + +SL + + N++ L L+ N L I L L L L +N+L
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVL 70
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
S+ L T+ + N+
Sbjct: 71 YETLDL-ESLSTLRTLDLNNNY 91
Score = 58.1 bits (141), Expect = 1e-09
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L LS +G V +SL++N L + + NL L N ++
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 123 FTLTFCKNLTHLYLDNN-LLDALPGFLLSMPQLD 155
+ + + + L ++P L
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Score = 55.4 bits (134), Expect = 1e-08
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
L LS + I +E+L+L SN L + L+ LR L L +N +Q
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---- 93
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
L ++ L+ NN + +
Sbjct: 94 --ELLVGPSIETLHAANNNISRVSCSRGQ 120
Score = 42.3 bits (100), Expect = 2e-04
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 95 SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQ 153
++ ++ +TD+ L+ A + N+ L L N L + L +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 154 L 154
L
Sbjct: 60 L 60
Score = 28.0 bits (63), Expect = 5.4
Identities = 4/36 (11%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 129 KNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
+ ++ L L + + GN
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP 45
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 67.0 bits (164), Expect = 2e-13
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 39/166 (23%)
Query: 268 FRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
F A ++G + +EL + G++ T + + ++M
Sbjct: 2 VYTYFSAVAGQDGEV-DAEELQRCLTQSGINGTYSPFS------------LETCRIM--- 45
Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
+ D +GK+ F F ++ + F D SG
Sbjct: 46 ----------IAML---DRDHTGKMGFNAFKELWAA-------LNAWKENFMTVDQDGSG 85
Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
TV L+ + G LS + + I + + N ++ ++D+V
Sbjct: 86 TVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFFDDYVAC 129
Score = 42.7 bits (101), Expect = 4e-05
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFLKV 322
++E F ++ GT++ EL + +G + L + K G++ F D++
Sbjct: 71 AWKENFMTVDQDGSGTVEH-HELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVAC 129
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
+ + D F+ D + G + DFL+
Sbjct: 130 CVKL-------RALTDFFRKRDHLQQGSANFIYDDFLQGT 162
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 67.6 bits (165), Expect = 2e-13
Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 32/177 (18%)
Query: 267 EFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
+ F F +G I D+ + ++ + +
Sbjct: 13 KILRVFNTFYDCNHDGVI-EWDDFELAIKKIC------------NLHSWPTDGKKHNEAR 59
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA------- 376
T D K AD + +++ ++LK+ K+ + + + +
Sbjct: 60 ATLKLIWD------GLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNF 113
Query: 377 -FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
F DT+ + V +++ G+ + D F + + V E F ++
Sbjct: 114 MFDVNDTSGDNIIDKHEYSTVYMSY--GIPKSDCDAAFDTLSDGGKTMVTREIFARL 168
Score = 37.9 bits (88), Expect = 0.002
Identities = 9/97 (9%), Positives = 24/97 (24%), Gaps = 17/97 (17%)
Query: 278 NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG-------------GKLSFPDFLKVMH 324
+ + T +E + S E K + ++ V
Sbjct: 78 DEQV-TKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYM 136
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
++ + + AF ++ F ++
Sbjct: 137 SYGIPKS---DCDAAFDTLSDGGKTMVTREIFARLWT 170
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 64.2 bits (157), Expect = 4e-13
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV 374
S D L AEDI K+ + AF AA F +++ K+ D +V
Sbjct: 1 SMTDLLS-------AEDI-KKAIGAFTAA-----DSFDHKKFFQMVGLKKKSAD---DVK 44
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
F D KSG + L +L LS+KE + + + K+ E+F
Sbjct: 45 KVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFST 104
Query: 432 I 432
+
Sbjct: 105 L 105
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 35/98 (35%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ ++ F + + +G I DEL I++
Sbjct: 42 DVKKVFHILDKDKSGFI-EEDELGSILKGFS----------------------------- 71
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMH 361
S A D+ + A D GK+ +F ++
Sbjct: 72 --SDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 65.6 bits (160), Expect = 5e-13
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
F+E + F N G I L L +M LG+ T E+KK ++E +S+ DF+
Sbjct: 51 AFKEKYMEFDLNNEGEI-DLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFV 109
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFP 354
+M K + K + + P
Sbjct: 110 NMM--LGKRSAVLK----LVMMFEGKANESSPKP 137
Score = 44.8 bits (106), Expect = 6e-06
Identities = 11/66 (16%), Positives = 25/66 (37%)
Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
+ + + D G + LK ++ G + E+ ++ E ++ + Y
Sbjct: 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISY 105
Query: 427 EDFVKI 432
DFV +
Sbjct: 106 RDFVNM 111
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 63.0 bits (154), Expect = 1e-12
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
+V A A + +F + SK+ D +V AF D KSG + LK
Sbjct: 10 DVAAALAACS--AADSFKHKEFFAKVGLASKSLD---DVKKAFYVIDQDKSGFIEEDELK 64
Query: 395 HVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
L N L+ E + + + + ++F +
Sbjct: 65 LFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
Score = 47.9 bits (115), Expect = 3e-07
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
A++ LA +F + SK+ D +V AF D KSG + +
Sbjct: 9 ADVAAALAACSAADSFKHKEFFAKVGLASKSLD---DVKKAFYVIDQDKSGFIEEDELKL 65
Query: 359 VMHTHS-KAEDIPKEVVDAF-KAADTTKSGTV 388
+ S A + AF D G +
Sbjct: 66 FLQNFSPSARALTDAETKAFLADGDKDGDGMI 97
Score = 36.0 bits (84), Expect = 0.004
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 35/98 (35%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ ++ F++ + +G I DEL + +++ S
Sbjct: 42 DVKKAFYVIDQDKSGFI-EEDELKLFLQNFSPS--------------------------- 73
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMH 361
A + AF D G + +F ++
Sbjct: 74 ----ARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 68.7 bits (168), Expect = 2e-12
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 16/113 (14%)
Query: 66 LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPD--------IGRLTNLRVLCLTD 113
++LSY +F + + L +N +TS+P + L + L
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 114 NCLQNASIPFTLTFCK--NLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164
N L S+ L+++ + N + P L+ QL +
Sbjct: 738 NKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788
Score = 67.6 bits (165), Expect = 3e-12
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 60 FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPP--DIGRLTNLRVLCLTDNCLQ 117
A L +T + +++ + N+L P + ++ L +L N ++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586
Query: 118 NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
+ LT L LD N ++ +P + Q++ + N
Sbjct: 587 --HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630
Score = 66.8 bits (163), Expect = 6e-12
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA-----SIPFTLTFCKNLTHLYLDN 138
+ + N +S P + L+ + P +T C +L L + +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHN 164
N + + L PQL + N N
Sbjct: 816 NDIRKVDEKLT--PQLYILDIADNPN 839
Score = 64.1 bits (156), Expect = 4e-11
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 19/135 (14%)
Query: 48 GGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLR 107
+ + A + PI + + +N +T + I RLT L+
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451
Query: 108 VLCLTDNCL------------------QNASIPFTLTFCKNLTHLYL-DNNLLDALPGFL 148
++ ++ Q + + + K+LT + L + + LP FL
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511
Query: 149 LSMPQLDTVYRHGNH 163
+P+L ++ N
Sbjct: 512 YDLPELQSLNIACNR 526
Score = 61.4 bits (149), Expect = 3e-10
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 56 IPQYFSHAFL-----LSLSY---------TPIGRRIFKCDTVEVLSLKSNSLTSLPPDI- 100
IP F+ + + SY +K ++L N + P ++
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693
Query: 101 GRLTNLRVLCLTDNCLQN------ASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMP 152
+ + + L++N + + LT + L N L +L ++P
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Query: 153 QLDTVYRHGNH 163
L + N
Sbjct: 754 YLSNMDVSYNC 764
Score = 60.7 bits (147), Expect = 5e-10
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 77 IFKCDTVEVLSLKSNSLTS----------LPPDIGRLTNLRVLCLTDNCLQNASIPFTLT 126
++ ++ L++ N S L D +++ + N L+ +L
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570
Query: 127 FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L L +N + L F + +L + N
Sbjct: 571 KMVKLGLLDCVHNKVRHLEAF-GTNVKLTDLKLDYNQ 606
Score = 60.3 bits (146), Expect = 6e-10
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 84 EVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQN--------ASIPFTLTFCKNLTHL 134
+ L + +T LP + L L+ L + N + + +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 135 YLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
Y+ N L+ P L M +L + N
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584
Score = 58.3 bits (141), Expect = 3e-09
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIP--FTLTFCKNLTH 133
+ L L N + +P D + L + N L+ IP F +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGS 648
Query: 134 LYLDNNLLDALPGFLLS------MPQLDTVYRHGNH 163
+ N + + + TV N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Score = 58.0 bits (140), Expect = 3e-09
Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 15/110 (13%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNS-------LTSLPPDIGRLTNLRVLCLTDNC 115
+ +SY + + ++ ++ L P I +L L + N
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817
Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN 164
++ + L L L + +N ++ + + +
Sbjct: 818 IR--KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
Score = 57.2 bits (138), Expect = 6e-09
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNAS 120
L Y P + + N + S +I + N + L+ N +Q
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-F 688
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALP 145
++ + L NNL+ ++P
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIP 713
Score = 51.4 bits (123), Expect = 5e-07
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
V LSL +P IG+LT L+VL + + F + +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 142 DALPGFLLSMPQ 153
L Q
Sbjct: 385 MHYKKMFLDYDQ 396
Score = 42.9 bits (101), Expect = 2e-04
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 66 LSLSY----TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLT-NLRVLCLTDNCLQNAS 120
LSL+ + I + ++VLS ++S T G + + ++
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFL----LSMPQLDTVYRHGNHNYFKS 168
L + + L L + ++ P S L N
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439
Score = 29.8 bits (67), Expect = 2.4
Identities = 11/96 (11%), Positives = 22/96 (22%), Gaps = 1/96 (1%)
Query: 112 TDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTF 170
+ + L +T L L +P + + +L + +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 171 MWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDL 206
R + K+ L RL
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 67.9 bits (166), Expect = 2e-12
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-- 141
+ L L SN L + P+ + + L +N L I L F +NL H L N
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC 251
Query: 142 DALPGFLLSMPQLDTVYRHGNHN 164
L F ++ TV +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKK 274
Score = 63.3 bits (154), Expect = 6e-11
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+ L LK N + ++ L L L N + + L L L +N L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVK-GQVVFAKLKTLDLSSNKL 203
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
+ S + + N
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK 225
Score = 60.2 bits (146), Expect = 6e-10
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASI 121
L + + + + + + L +N +T L G + ++ L L N + +
Sbjct: 104 LHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L HL L N + + G + +L T+ N
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK 202
Score = 59.9 bits (145), Expect = 6e-10
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 84 EVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
++ + +SL + + N++ L L+ N L L L L L +N+L
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLY 71
Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
S+ L T+ + N+
Sbjct: 72 ETLDL-ESLSTLRTLDLNNNY 91
Score = 57.2 bits (138), Expect = 5e-09
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L LS +G V +SL++N L + + NL L N ++
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 123 FTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQL 154
+ + + + L ++P L
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Score = 54.9 bits (132), Expect = 2e-08
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
L LS + I +E+L+L SN L + L+ LR L L +N +Q
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---- 93
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
L ++ L+ NN + +
Sbjct: 94 --ELLVGPSIETLHAANNNISRVSCSRGQ 120
Score = 41.8 bits (98), Expect = 4e-04
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 92 SLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLS 150
++ + + ++ +TD+ L+ ++ N+ L L N L + L
Sbjct: 1 AIHEIKQN---GNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 151 MPQLDTVYRHGNH 163
+L+ + N
Sbjct: 57 FTKLELLNLSSNV 69
Score = 40.6 bits (95), Expect = 7e-04
Identities = 19/200 (9%), Positives = 45/200 (22%), Gaps = 25/200 (12%)
Query: 25 RSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVE 84
+ + K + C G C + L +
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL----------- 317
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
LS + + L + R + + + L LD
Sbjct: 318 -LSGQGSETERLECERENQARQREIDALKEQYRTVI-DQVTLRKQAKITLEQKKKALDEQ 375
Query: 145 P-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRL 203
+ +LD + + ++LR K ++ +
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQ-----------IELQHATEEQSPLQLLRAIVKRYEEMYV 424
Query: 204 QDLAVQSVIASKENFFEPGL 223
+ +VQ+ + ++
Sbjct: 425 EQQSVQNNAIRDWDMYQHKE 444
Score = 37.5 bits (87), Expect = 0.008
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
+SL I + + +E L+ N N RV + ++ +
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 123 FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLD 155
C T + + LP F + L
Sbjct: 279 -NEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 64.0 bits (156), Expect = 2e-12
Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 31/171 (18%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ + F + G I T + + K ++ +M
Sbjct: 7 KMKTYFNRIDFDKDGAI-TRMDFESMAERFA--------------KESEMKAEHAKVLM- 50
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD----AFKAA 380
D V D F + F+ M K + V F+A
Sbjct: 51 ------DSLTGVWDNF-LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAV 103
Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
DT + + GL F + + + E+FV
Sbjct: 104 DTNEDNNISRDEYGIFFGML--GLDKTMAPASFDAIDTNNDGLLSLEEFVI 152
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 66.4 bits (163), Expect = 3e-12
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 77 IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
I K + L + +++ ++P + ++ L L + N L + ++P +++ NL +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGIT 155
Query: 136 LDNNLLD-ALPGFLLSMPQLDTV 157
D N + A+P S +L T
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTS 178
Score = 64.5 bits (158), Expect = 1e-11
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 76 RIFKCDTVEVLSLKSNSLT---SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
+ V L L +L +P + L L L + IP + L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 133 HLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNH 163
+LY+ + + A+P FL + L T+ N
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Score = 56.4 bits (137), Expect = 4e-09
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 83 VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+++ N LT +PP L NL + L+ N L KN ++L N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSL 233
Query: 142 D-ALP--GFLLSMPQLD 155
L G ++ LD
Sbjct: 234 AFDLGKVGLSKNLNGLD 250
Score = 52.5 bits (127), Expect = 8e-08
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + L NSL +G NL L L +N + ++P LT K L L +
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNV 275
Query: 137 DNNLL 141
N L
Sbjct: 276 SFNNL 280
Score = 39.1 bits (92), Expect = 0.002
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 77 IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
+ + L L++N + +LP + +L L L ++ N L IP +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNL-QRFDVSA 297
Query: 136 LDNN 139
NN
Sbjct: 298 YANN 301
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 61.9 bits (151), Expect = 3e-12
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
AEDI + + DT F + + +V D F+ D +SG
Sbjct: 7 SAEDI-AAALQECQDPDT-----FEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGY 57
Query: 388 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ LK+ L L+ E + A+ + K+ ++F ++
Sbjct: 58 LDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
Score = 44.2 bits (105), Expect = 6e-06
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
++ L E F + + +V D F+ D +SG L +
Sbjct: 9 EDIAAALQECQDPDTFEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGYLDGDELKY 65
Query: 359 VMHT-HSKAEDIPKEVVDAF-KAADTTKSGTV 388
+ S A ++ + + AAD G +
Sbjct: 66 FLQKFQSDARELTESETKSLMDAADNDGDGKI 97
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 35/99 (35%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ ++ F +G + DEL ++
Sbjct: 42 QVKDIFRFIDNDQSGYL-DGDELKYFLQKFQ----------------------------- 71
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMHT 362
S A ++ + + AAD GK+ +F +++H+
Sbjct: 72 --SDARELTESETKSLMDAADNDGDGKIGADEFQEMVHS 108
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 64.2 bits (156), Expect = 3e-12
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 32/177 (18%)
Query: 267 EFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
+ + F F +G+I ++ +M G LS D+ +
Sbjct: 9 KIKFTFDFFLDMNHDGSI-QDNDFEDMMTRYK------------EVNKGSLSDADYKSMQ 55
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA------- 376
+ + E D AD K +S+ ++L + ++
Sbjct: 56 AS------LEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPF 109
Query: 377 -FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
FK D + G V + ++ N+ L +V ++ + ++
Sbjct: 110 LFKGMDVSGDGIVDLEEFQNYCKNF--QLQCADVPAVYNVITDGGKVTFDLNRYKEL 164
Score = 35.7 bits (82), Expect = 0.013
Identities = 7/98 (7%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 277 RNGTIKTLDE-LSVIMRSLGMSPTIAELKKYLAE------------KGGKLSFPDFLKVM 323
++ + + +E L++ +++ ++A+L + G + +F
Sbjct: 73 KDDVV-SWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYC 131
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
+V + + ++ +
Sbjct: 132 KNFQLQCA---DVPAVYNVITDGGKVTFDLNRYKELYY 166
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 63.2 bits (154), Expect = 4e-12
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 39/167 (23%)
Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
F A ++G I DEL + G++ + ++M
Sbjct: 3 PLYGYFASVAGQDGQI-DADELQRCLTQSGIAGGYKPFN------------LETCRLM-- 47
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
V D SG + F +F ++ F + D+ +S
Sbjct: 48 -----------VSML---DRDMSGTMGFNEFKELWAV-------LNGWRQHFISFDSDRS 86
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
GTV + L+ L G L+ + V+ I + + + K+ ++D++
Sbjct: 87 GTVDPQELQKALTTMGFRLNPQTVNSIAKR--YSTSGKITFDDYIAC 131
Score = 43.1 bits (102), Expect = 4e-05
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFLKV 322
+R+ F F + GT+ EL + ++G + GK++F D++
Sbjct: 73 GWRQHFISFDSDRSGTVDP-QELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIAC 131
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
+ + D+F+ D+ + G S+ DF++ +
Sbjct: 132 CVK-------LRALTDSFRRRDSAQQGMVNFSYDDFIQCV 164
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 66.8 bits (163), Expect = 4e-12
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 75 RRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
+++ C + VL++ + LT+LP + ++ L + DN L S+P L
Sbjct: 32 QKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT--SLPALPP---ELR 84
Query: 133 HLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L + N L +LP + +L H
Sbjct: 85 TLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115
Score = 65.3 bits (159), Expect = 2e-11
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
+ L + N LTSLP L L ++ N L S+P + L L + N L
Sbjct: 224 KELIVSGNRLTSLPVLPSELKELM---VSGNRLT--SLPMLPS---GLLSLSVYRNQLTR 275
Query: 144 LPGFLLSMPQLDTVYRHGN 162
LP L+ + TV GN
Sbjct: 276 LPESLIHLSSETTVNLEGN 294
Score = 60.7 bits (147), Expect = 4e-10
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L + N LTSLP L L + L L L++ N L +
Sbjct: 84 RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTS 135
Query: 144 LPGFLLSMPQLD 155
LP + +L
Sbjct: 136 LPVLPPGLQELS 147
Score = 60.3 bits (146), Expect = 5e-10
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
+ LS+ N L SLP L L +N + S+P + L L + N L +
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAY---NN--RLTSLPALPS---GLKELIVSGNRLTS 235
Query: 144 LPGFLLSMPQLD 155
LP + +L
Sbjct: 236 LPVLPSELKELM 247
Score = 59.9 bits (145), Expect = 8e-10
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 66 LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L++ + + + + L + N+LTSLP L L ++ N L S+P
Sbjct: 45 LNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLT--SLP 97
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFL 148
L+ L ALP L
Sbjct: 98 VLPPGLLELSIFSNPLTHLPALPSGL 123
Score = 59.5 bits (144), Expect = 1e-09
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
LS+ N LT LP + L++ + L N L TL + +T + +
Sbjct: 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS----ERTLQALREITSAPGYSGPIIR 319
Query: 144 LPGFLLSMPQLDTVYRHGNHNYF 166
S P+ ++
Sbjct: 320 FDMAGASAPRETRALHLAAADWL 342
Score = 59.1 bits (143), Expect = 2e-09
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
+ LS+ N L SLP L L +N L S+P + L L + +N L +
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAY---NNQLT--SLPMLPS---GLQELSVSDNQLAS 195
Query: 144 LPGFLLSMPQLD 155
LP + +L
Sbjct: 196 LPTLPSELYKLW 207
Score = 54.5 bits (131), Expect = 4e-08
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 65 LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT 124
+ S T + + L + N LTSLP L+ L ++DN L S+P
Sbjct: 108 IFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLA--SLPAL 159
Query: 125 LTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
+ L L+ NN L +LP + +L
Sbjct: 160 PS---ELCKLWAYNNQLTSLPMLPSGLQELS 187
Score = 32.6 bits (74), Expect = 0.27
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + ++L+ N L+ R + + + L HL
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL-HLAA 338
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKK 196
+ L+ A G + + N + F S F+ S+ I+ + ++ +
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAF-SLFLDRLSETENFIKDAGFKAQISSWLAQ 397
Query: 197 LHQPSRL 203
L + L
Sbjct: 398 LAEDEAL 404
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 61.4 bits (150), Expect = 5e-12
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
KA+DI + + AFK T + F ++ K + +V + F+ D +SG
Sbjct: 7 KADDI-NKAISAFKDPGT-----FDYKRFFHLVGLKGKTDA---QVKEVFEILDKDQSGF 57
Query: 388 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ + LK VL G L+ E + + + K+ ++F K+
Sbjct: 58 IEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
Score = 34.1 bits (79), Expect = 0.016
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 35/97 (36%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ +E F + + +G I +EL +++
Sbjct: 42 QVKEVFEILDKDQSGFI-EEEELKGVLKGFSAH--------------------------- 73
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVM 360
D+ A A D+ GK+ +F K++
Sbjct: 74 ----GRDLNDTETKALLAAGDSDHDGKIGADEFAKMV 106
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 61.1 bits (149), Expect = 7e-12
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
+V A KA + + ++ F + +K+ D ++ AF D KSG + LK
Sbjct: 11 DVAAALKACE--AADSFNYKAFFAKVGLTAKSAD---DIKKAFFVIDQDKSGFIEEDELK 65
Query: 395 HVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
L L+ E + + + + +++ +
Sbjct: 66 LFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
Score = 49.6 bits (119), Expect = 7e-08
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 293 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK 350
+ A++ L ++ F + +K+ D ++ AF D KSG
Sbjct: 2 AFSGILADADVAAALKACEAADSFNYKAFFAKVGLTAKSAD---DIKKAFFVIDQDKSGF 58
Query: 351 LSFPDFLKVMHTHSK-AEDIPKEVVDAF-KAADTTKSGTV 388
+ + + S A + AF KA D+ G +
Sbjct: 59 IEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAI 98
Score = 34.9 bits (81), Expect = 0.009
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 35/98 (35%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ ++ FF+ + +G I DEL + ++
Sbjct: 43 DIKKAFFVIDQDKSGFI-EEDELKLFLQVFSAG--------------------------- 74
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMH 361
A + AF KA D+ G + ++ ++
Sbjct: 75 ----ARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK 108
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 63.2 bits (154), Expect = 8e-12
Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 61/190 (32%)
Query: 266 LEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
L F RN G + + +L + +L ++P +
Sbjct: 29 LRLHHRFRALDRNKKGYL-SRMDLQQ-IGALAVNPLGDRI-------------------- 66
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD-------- 375
++ S ++ FP F++V+ ED E D
Sbjct: 67 ----------------IESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLN 110
Query: 376 --------AFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKE----VDQIFREANVTMNS 422
AF+ D + G + + VL G ++ ++ D+ +EA+ +
Sbjct: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDG 170
Query: 423 KVRYEDFVKI 432
V + +F K
Sbjct: 171 AVSFVEFTKS 180
Score = 38.2 bits (89), Expect = 0.002
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 33/101 (32%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ F L+ +G I + E+ ++R + G +++
Sbjct: 115 KLHYAFQLYDLDRDGKI-SRHEMLQVLRLMV---------------GVQVT--------- 149
Query: 325 THSKAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHS 364
E+ + + D + AD G +SF +F K +
Sbjct: 150 -----EEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMD 185
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 60.7 bits (148), Expect = 8e-12
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
A+DI + + + +AAD+ ++ F + SK D ++ F D KSG
Sbjct: 8 SAKDI-ESALSSCQAADS-----FNYKSFFSTVGLSSKTPD---QIKKVFGILDQDKSGF 58
Query: 388 VPAKYLKHVLVNWGEG---LSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ + L+ L N+ L+S E + + K+ E+F +
Sbjct: 59 IEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
Score = 46.5 bits (111), Expect = 9e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
+++ L+ ++ F + SK D ++ F D KSG + +
Sbjct: 10 KDIESALSSCQAADSFNYKSFFSTVGLSSKTPD---QIKKVFGILDQDKSGFIEEEELQL 66
Query: 359 VMHTHS-KAEDIPKEVVDAF-KAADTTKSGTV 388
+ S A + AF A DT G +
Sbjct: 67 FLKNFSSSARVLTSAETKAFLAAGDTDGDGKI 98
Score = 35.3 bits (82), Expect = 0.006
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 35/97 (36%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ ++ F + + +G I +EL + +++
Sbjct: 43 QIKKVFGILDQDKSGFI-EEEELQLFLKNFSS---------------------------- 73
Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVM 360
A + AF A DT GK+ +F ++
Sbjct: 74 ---SARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLV 107
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 61.9 bits (150), Expect = 9e-12
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
F+ + F N G I + L ++ LG+ T ELK+ + E S+ DFL
Sbjct: 49 AFKVKYMEFDLNGNGDI-DIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFL 107
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFP 354
++M ++ ++ + P
Sbjct: 108 RMM---LGKRSAILRMILMYEEKNKEHKRPTGPP 138
Score = 49.1 bits (117), Expect = 2e-07
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
+ L P + + + D +G + LK +L G
Sbjct: 25 EGINKQFLDDPKYSNDEDL----PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVP 80
Query: 404 LSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ E+ ++ RE + Y DF+++
Sbjct: 81 KTHLELKRLIREVSSGSEETFSYSDFLRM 109
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 65.0 bits (159), Expect = 9e-12
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
L L N +T + L NL L L+ N + ++ +L +L L+L+NN L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKL 252
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
+PG L + VY H N+
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNN 274
Score = 57.7 bits (140), Expect = 2e-09
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTF--CKNLTHLYLDNNL 140
+ L + N +T + + L + V+ L N L+++ I F K L+++ + +
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTN 182
Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
+ +P L P L ++ GN
Sbjct: 183 ITTIPQGLP--PSLTELHLDGNK 203
Score = 55.4 bits (134), Expect = 1e-08
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+L L++N +T + L NL L L +N + S P L LYL N
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ 111
Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
L LP + L + H N
Sbjct: 112 LKELPEKMP--KTLQELRVHENE 132
Score = 53.9 bits (130), Expect = 3e-08
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 84 EVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L L +N ++ + P L L L L+ N L+ +P + K L L + N +
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--ELPEKM-P-KTLQELRVHENEIT 134
Query: 143 ALPGFLLS-MPQLDTVYRHGNH 163
+ + + + Q+ V N
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNP 156
Score = 52.3 bits (126), Expect = 1e-07
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 12/109 (11%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN--- 118
L LS+ + + + L L +N L +P + ++V+ L +N +
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 119 --ASIPFTLTFCKNLTHLYLDNNLLDAL---PGFLLSMPQLDTVYRHGN 162
P T + + + L +N + P + V
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 31.5 bits (72), Expect = 0.47
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
+LRV+ +D L+ +P L + L L NN + + G ++ L T+ N
Sbjct: 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 65.7 bits (161), Expect = 1e-11
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 56 IPQYFSHAFLLSLSY--------T-PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTN 105
I +L T I + C + L L N L+ ++P +G L+
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 106 LRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNH 163
LR L L N L+ IP L + K L L LD N L +P L + L+ + N
Sbjct: 444 LRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Score = 64.2 bits (157), Expect = 4e-11
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 42 NCSLEVGGICSHIWIPQYFSHAFLLSLSYT------PIGRRIFKCDTVEVLSLKSNSLTS 95
S+ G + L++S + R C +E L + SN+ ++
Sbjct: 160 ANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVDVSR----CVNLEFLDVSSNNFST 214
Query: 96 LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLS 150
P +G + L+ L ++ N L ++ C L L + +N +P L
Sbjct: 215 GIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269
Score = 62.2 bits (152), Expect = 2e-10
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 56 IPQYFSHA---FLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLR 107
IP S+ L LS+ I + + L L N L +P ++ + L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-DALPGFLLSMPQLDTVYRHGNH 163
L L N L IP L+ C NL + L NN L +P ++ + L + N
Sbjct: 470 TLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Score = 61.8 bits (151), Expect = 2e-10
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 77 IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
+ C ++ L + N L+ I T L++L ++ N IP K+L +L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-VGPIPPLP--LKSLQYLS 275
Query: 136 LDNNLLD-ALPGFLL-SMPQLDTVYRHGNH 163
L N +P FL + L + GNH
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Score = 61.5 bits (150), Expect = 2e-10
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 77 IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
+ C + +SL +N LT +P IGRL NL +L L++N + +IP L C++L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLD 544
Query: 136 LDNNLL---------------------DALPGFLLSMPQLDTVYRHGNHNYFKST 169
L+ NL ++ + + GN F+
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Score = 58.0 bits (141), Expect = 3e-09
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
L++ ++ + + +E L L ++ + +L L L+ N L +
Sbjct: 62 LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG-PVTTLT 120
Query: 126 TF--CKNLTHLYLDNNLLDAL--PGFLLSMPQLDTVYRHGNH 163
+ C L L + +N LD L + L+ + N
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Score = 57.6 bits (140), Expect = 4e-09
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 79 KCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYL 136
CDT+ L L N ++PP G + L L L+ N +P TL + L L L
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMRGLKVLDL 350
Query: 137 DNNLL-DALPGFLLSM-PQLDTVYRHGNH 163
N LP L ++ L T+ N+
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNN 379
Score = 55.3 bits (134), Expect = 3e-08
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 66 LSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPD-IGRLTNLRVLCLTDNCLQNA 119
L LS + C +E L+L SN+ + LP D + ++ L+VL L+ N
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG- 357
Query: 120 SIPFTLTFCK-NLTHLYLDNNLLD-ALPGFL--LSMPQLDTVYRHGNH 163
+P +LT +L L L +N + L L +Y N
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Score = 51.1 bits (123), Expect = 5e-07
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 11/110 (10%)
Query: 42 NCSLEVGGICSHIWIPQYFSHAFLLSLSYT---------PIGRRIFKCDTVEVLSLKSNS 92
S ++ Y + + + ++ + T ++ S
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 93 LT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
P ++ L ++ N L IP + L L L +N +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDI 668
Score = 50.3 bits (121), Expect = 9e-07
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 60 FSHAFLLSLSYTPIGRRI---FKCDTVEVLSLKSNSLT-SLPPD--IGRLTNLRVLCLTD 113
+ L LS + I + ++ L L NSL+ + +G + L+ L ++
Sbjct: 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135
Query: 114 NCLQNASIPFTLTF-CKNLTHLYLDNNLL 141
N L + + +L L L N +
Sbjct: 136 NTL-DFPGKVSGGLKLNSLEVLDLSANSI 163
Score = 47.2 bits (113), Expect = 8e-06
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 48 GGICSHIWIPQYFSHAFLLSLSYT-PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTN 105
G + + + S Y ++ L + N L+ +P +IG +
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 106 LRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQL 154
L +L L N + SIP + + L L L N L +P + ++ L
Sbjct: 658 LFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 44.5 bits (106), Expect = 6e-05
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 77 IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
I + +L+L N ++ S+P ++G L L +L L+ N L + IP ++ LT +
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEID 710
Query: 136 LDNNLL 141
L NN L
Sbjct: 711 LSNNNL 716
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 63.0 bits (153), Expect = 1e-11
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 30/173 (17%)
Query: 267 EFRECFFLFARN--GTIKTLDELS-VIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
E F F +N G + DE+ + L + + ++
Sbjct: 49 RRIELFKKFDKNETGKL-CYDEVYSGCLEVLKLDEFTSRVRDIT---------------- 91
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
+ G F +FL+ D E+ F D +
Sbjct: 92 --------KRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDF-FELTVMFDEIDAS 142
Query: 384 KSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
+ V + K + G ++ +F+E + V +++F A A
Sbjct: 143 GNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195
Score = 27.2 bits (60), Expect = 9.8
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGE 402
K K ++ + + AE + ++ FK D ++G + + +
Sbjct: 22 KKAKDRKEAWERIRQAIPREKTAEAK-QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKL 80
Query: 403 GLSSKEVDQIFREA 416
+ V I + A
Sbjct: 81 DEFTSRVRDITKRA 94
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 62.1 bits (151), Expect = 1e-11
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 35/167 (20%)
Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
+FR F A + + + EL I+ + + +
Sbjct: 5 QFRRLFAQLAGDDMEV-SATELMNILNKVVTRHPDLKTDGF------------------- 44
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
D + +V D+ +GKL F +F + + K+ +K D +S
Sbjct: 45 ---GIDTCRSMVAVM---DSDTTGKLGFEEFKYLWNN-------IKKWQAIYKQFDVDRS 91
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
GT+ + L G L+ I R + +++F+
Sbjct: 92 GTIGSSELPGAFEAAGFHLNEHLYSMIIR-RYSDEGGNMDFDNFISC 137
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/101 (17%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGM--SPTIAEL--KKYLAEKGGKLSFPDFL 320
+++ + F + GTI + EL + G + + + ++Y +++GG + F +F+
Sbjct: 78 KWQAIYKQFDVDRSGTIGS-SELPGAFEAAGFHLNEHLYSMIIRRY-SDEGGNMDFDNFI 135
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSG--KLSFPDFLKV 359
+ + AFK+ D +G +++ ++L++
Sbjct: 136 SCLVRL-------DAMFRAFKSLDKDGTGQIQVNIQEWLQL 169
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 60.0 bits (146), Expect = 2e-11
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
++ A + S F ++ K+ ++ + F+ D +SG + LK
Sbjct: 10 DIAAALRDCQ--APDSFSPKKFFQISGMSKKSSS---QLKEIFRILDNDQSGFIEEDELK 64
Query: 395 HVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ L + L++ E A+ + K+ E+F ++
Sbjct: 65 YFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
Score = 44.2 bits (105), Expect = 5e-06
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 293 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK 350
SL + +++ L + S F ++ K+ ++ + F+ D +SG
Sbjct: 1 SLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMSKKSSS---QLKEIFRILDNDQSGF 57
Query: 351 LSFPDFLKVMHT-HSKAEDIPKEVVDAF-KAADTTKSGTV 388
+ + + S A + F AAD G +
Sbjct: 58 IEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKI 97
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 33/98 (33%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ +E F + +G I DEL ++ L+
Sbjct: 42 QLKEIFRILDNDQSGFI-EEDELKYFLQRFES-------------GARVLT--------- 78
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362
E AAD GK+ +F +++ +
Sbjct: 79 --------ASETKTFLAAADHDGDGKIGAEEFQEMVQS 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 65.0 bits (158), Expect = 2e-11
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDNNLL 141
E L + +N L SLP R + + C +N IP + + L++N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242
Query: 142 DALPGFLLSMPQLDTVYRHGN-----HNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKK 196
+ LS Y + ++T +D + + +V +
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302
Query: 197 LHQPSRLQDL 206
Sbjct: 303 FEHEEHANTF 312
Score = 61.9 bits (150), Expect = 1e-10
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L L +L+SLP ++ + VL +T N L S+P +L +L +N L
Sbjct: 62 SELQLNRLNLSSLPDNLP--PQITVLEITQNALI--SLPELPA---SLEYLDACDNRLST 114
Query: 144 LPGFLLSMPQLD 155
LP S+ LD
Sbjct: 115 LPELPASLKHLD 126
Score = 59.6 bits (144), Expect = 9e-10
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 23/100 (23%)
Query: 84 EVLSLKSNSLTSLPPDIGRLT-----------------NLRVLCLTDNCLQNASIPFTLT 126
E ++ +N LT LP L +L L ++ N L+ S+P
Sbjct: 143 EYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE--SLPAVPV 200
Query: 127 FCKNLT----HLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
+ N + +P +LS+ T+ N
Sbjct: 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240
Score = 58.4 bits (141), Expect = 2e-09
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+ VL + N+L SLP +L L DN L ++P +L HL +DNN L
Sbjct: 82 ITVLEITQNALISLPELPA---SLEYLDACDNRLS--TLPELPA---SLKHLDVDNNQLT 133
Query: 143 ALPGFLLSMPQLD 155
LP + ++
Sbjct: 134 MLPELPALLEYIN 146
Score = 56.5 bits (136), Expect = 9e-09
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
+ N SL + + L L L S+P L +T L + N L +L
Sbjct: 41 LPGENRNEAVSLLKEC-LINQFSELQLNRLNLS--SLPDNL--PPQITVLEITQNALISL 95
Query: 145 PGFLLSMPQLD 155
P S+ LD
Sbjct: 96 PELPASLEYLD 106
Score = 56.1 bits (135), Expect = 1e-08
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
L + +N LT LP L + +N L +P T +L L + NN L LP
Sbjct: 125 LDVDNNQLTMLPELPA---LLEYINADNNQLT--MLPELPT---SLEVLSVRNNQLTFLP 176
Query: 146 GFLLSMPQLD 155
S+ LD
Sbjct: 177 ELPESLEALD 186
Score = 42.7 bits (100), Expect = 2e-04
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 86 LSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
+ N+++ D L A + L L+ L +L
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 145 PGFLLSMPQLDTVYRHGNH 163
P L PQ+ + N
Sbjct: 75 PDNLP--PQITVLEITQNA 91
Score = 32.3 bits (73), Expect = 0.33
Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 10/127 (7%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
I D + L+ N L+S + + + S T + L
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285
Query: 137 DN------NLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRS---TSTR 187
+ + + +T + + S ++ + +
Sbjct: 286 AWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARN-TSGFREQVAAWLEKLSA 344
Query: 188 DEVLRKQ 194
LR+Q
Sbjct: 345 SAELRQQ 351
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 64.3 bits (157), Expect = 2e-11
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+ L N L + ++ L L +++N L ++ L L L +N L
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL 308
Query: 143 ALPGFLLSMPQLDTVYRHGN 162
+ +L+ +Y N
Sbjct: 309 HVERNQPQFDRLENLYLDHN 328
Score = 63.1 bits (154), Expect = 5e-11
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
+ LSY I F +E L + +N L +L + L+VL L+ N L +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HV 310
Query: 122 PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLD 155
L +LYLD+N + L ++ L
Sbjct: 311 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345
Score = 57.7 bits (140), Expect = 3e-09
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
++++ K++++ LP + + +L L D ++ I + + + LY+ N +
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAI 105
Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
LP ++P L + N
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERND 128
Score = 56.6 bits (137), Expect = 5e-09
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L S+ + + + +L L+ N+LT + L + L+ N L+ I
Sbjct: 210 LDASHNSINVVRGPVNV--ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELE--KIM 264
Query: 123 F-TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ + L LY+ NN L AL + +P L + NH
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Score = 56.6 bits (137), Expect = 6e-09
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
E+L+L + + ++ L + N + +P LT L L+ N L
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDL 129
Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
+LP + P+L T+ N+
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNN 152
Score = 55.8 bits (135), Expect = 1e-08
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNAS 120
L+L+ I F T++ L + N++ LPP + + + L VL L N L S
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--S 131
Query: 121 IP-FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
+P LT L + NN L+ + + L + N
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Score = 53.5 bits (129), Expect = 6e-08
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L +S + T++VL L N L + + + L L L N + ++
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV--TLK 334
Query: 123 FTLTFCKNLTHLYLDNNLLD 142
+ T L +L L +N D
Sbjct: 335 LS-TH-HTLKNLTLSHNDWD 352
Score = 52.0 bits (125), Expect = 2e-07
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
LS+S I F+ +++ L L SN LT + + +L ++ N L
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS---- 199
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
TL + L +N ++ + G + +L + N+
Sbjct: 200 --TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNN 237
Score = 45.8 bits (109), Expect = 2e-05
Identities = 9/86 (10%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 86 LSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDN 138
+ D+ L N +++ ++ ++ +P L + + L L++
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLND 78
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNH 163
++ + + +Y N
Sbjct: 79 LQIEEIDTYAFAYAHTIQKLYMGFNA 104
Score = 35.4 bits (82), Expect = 0.029
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 92 SLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS- 150
+ ++ + + Q+ F N + N+ + LP LL
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQ-TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67
Query: 151 MPQLDTVYRHGNH 163
Q++ + +
Sbjct: 68 FRQVELLNLNDLQ 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 64.4 bits (156), Expect = 3e-11
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 58 QYFSHAFLLSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN 114
+ L LS+ + + +EVL N+L ++ + L L+ L L +N
Sbjct: 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNN 518
Query: 115 CLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF----LLSMPQLD 155
LQ ++ L C L L L N L G +P +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563
Score = 64.4 bits (156), Expect = 3e-11
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 56 IPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNC 115
+ L S + V VL L LT L + +L + L L+ N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR 474
Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L+ ++P L + L L +N L+ + G + ++P+L + N
Sbjct: 475 LR--ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR 519
Score = 62.9 bits (152), Expect = 8e-11
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 50 ICSHIWIPQYFSHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLR 107
+ + + ++ +L L++ + + + V L L N L +LPP + L L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489
Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF--LLSMPQLDTVYRHGN 162
VL +DN L+ ++ + L L L NN L L+S P+L + GN
Sbjct: 490 VLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 64.3 bits (157), Expect = 3e-11
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 65 LLSLSYTPIGRR------IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN 118
L LS + + F +++ L L N + ++ + L L L + L+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWY 173
S +NL +L + + G + L+ + GN F+ F+
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPD 464
Score = 62.7 bits (153), Expect = 9e-11
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+VL L + ++ L++L L LT N +Q+ + +L L L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA 113
Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
+L + + L + N
Sbjct: 114 SLENFPIGHLKTLKELNVAHNL 135
Score = 62.7 bits (153), Expect = 1e-10
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+ L +L SL IG L L+ L + N +Q+ +P + NL HL L +N +
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 143 AL-PGFLLSMPQLDTVYRHGN--HNYFKS 168
++ L + Q+ + + N
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Score = 58.9 bits (143), Expect = 1e-09
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 59 YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQ 117
F H+ L +S + + + L + L++L VL + N Q
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 118 NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
+P T +NLT L L L+ L + + L + N+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Score = 57.7 bits (140), Expect = 4e-09
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 9/106 (8%)
Query: 66 LSLSY----TPIGRRIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNA 119
L ++ IF + L L L L P L++L+VL ++ N +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS 508
Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGNH 163
F +L L N + L + N
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Score = 57.3 bits (139), Expect = 4e-09
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 82 TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+ + L L N L L L+VL L+ +Q +L+ L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNP 87
Query: 141 LDALP 145
+ +L
Sbjct: 88 IQSLA 92
Score = 53.9 bits (130), Expect = 6e-08
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 66 LSLSY----TPIGRRIFKCDTVEVLSLKSNSLT-SLPPDI-GRLTNLRVLCLTDNCLQNA 119
L +S+ ++EVL + NS + PDI L NL L L+ L+
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ- 484
Query: 120 SIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH 163
P +L L + +N +L + L + NH
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Score = 48.9 bits (117), Expect = 2e-06
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 66 LSLSY----TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
L LS +++VL++ N+ SL L +L+VL + N + +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 121 IPFTLTFCKNLTHLYLDNNLLD 142
F +L L L N
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFA 556
Score = 48.5 bits (116), Expect = 3e-06
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQN--ASIPF 123
+ + +E L L SN + S+ D+ L + +L L+ + N I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 124 TLTFCKNLTHLYLDNNLL--DALPGFLLSMPQLDTVYRHGNHN 164
L L L NN + + + + L+
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Score = 47.3 bits (113), Expect = 7e-06
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 86 LSLKSNSLTSL-------PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
L+++ L L LTN+ L + ++ HL L N
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVN 313
Query: 139 NLLDALPG-FLLSMPQLDTVYRHGNH 163
P L S+ +L G +
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGN 339
Score = 45.8 bits (109), Expect = 2e-05
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
+ +P ++ + + L L+ N L++ ++ L L L + +
Sbjct: 11 TYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 145 -PGFLLSMPQLDTVYRHGNH 163
G S+ L T+ GN
Sbjct: 68 EDGAYQSLSHLSTLILTGNP 87
Score = 45.0 bits (107), Expect = 4e-05
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 6/103 (5%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
L I V SL S ++ + + L L + F
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQ----FPT 321
Query: 126 TFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKS 168
K+L L +N + +P L+ + N FK
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG 363
Score = 44.6 bits (106), Expect = 5e-05
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD-------N 138
L L N + + P + L L L +N + + L L
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHN 164
NL L + L +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYL 267
Score = 43.9 bits (104), Expect = 7e-05
Identities = 18/94 (19%), Positives = 24/94 (25%), Gaps = 10/94 (10%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
SL I R + L L + P L +L+ L T N F
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSN---KGGNAF 341
Query: 124 TLTFCKNLTHLYLDNN---LLDALPGFLLSMPQL 154
+ +L L L N L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 64.3 bits (157), Expect = 3e-11
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L L + + D L L LT N L L+ K L HL+ +
Sbjct: 60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGIS 118
Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
++ L + L+++Y NH
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNH 140
Score = 60.8 bits (148), Expect = 4e-10
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASI 121
L L+ + + + T++ L L +N +L +L L + N +
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 122 PFTLTFCKNLTHLYLDNNLL---DALPGFLLSMPQLDTVYRHGNH 163
L +NL L L ++ + D L ++ L ++ N
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Score = 60.4 bits (147), Expect = 5e-10
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 65 LLSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
+ I +F +VE ++L+ + ++ + + L+ L LT L
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--E 292
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNHNYFK 167
+P L L L L N + L S P L + GN +
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Score = 58.1 bits (141), Expect = 3e-09
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 66 LSLSY---TPIGRRIFKC-DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
++L I F C ++ L L + L+ LP + L+ L+ L L+ N +N
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN-LC 317
Query: 122 PFTLTFCKNLTHLYLDNN--LLDALPGFLLSMPQLDTVYRHGNH 163
+ + +LTHL + N L+ G L ++ L + +
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Score = 56.6 bits (137), Expect = 9e-09
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+ L L +N L + L+ L + + L K L LYL +N +
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS 142
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
++ +L + N
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNA 164
Score = 56.2 bits (136), Expect = 1e-08
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+ L+L N SL + L +L L L+ L L L ++LLD
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
+P L + GNH
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNH 460
Score = 56.2 bits (136), Expect = 1e-08
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 66 LSLSYTPIGR---RIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
L L+ P+ ++ L ++S+ + L L L N + +
Sbjct: 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145
Query: 121 IPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKS 168
+P + L L NN + L + S+ Q + + N N
Sbjct: 146 LP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Score = 53.1 bits (128), Expect = 1e-07
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
E+L L L+S+ L + + L+ N L + S L+ K + L L +N +
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIY-LNLASNHIS 536
Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
+ P L + Q T+ N
Sbjct: 537 IILPSLLPILSQQRTINLRQNP 558
Score = 51.9 bits (125), Expect = 2e-07
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPD----IGRLTNLRVLCLTDNCLQ 117
L+LS+ ++F ++ L+L+ N + L L +L L+ L
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 118 NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ T K + H+ L +N L + LS + + NH
Sbjct: 490 S-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534
Score = 44.6 bits (106), Expect = 4e-05
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYL-DN 138
T L+L N + + P + L L +L D
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK-GLKNSTIQSLWLGTFEDM 238
Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKS 168
+ D P + ++ + +YF +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFN 268
Score = 44.2 bits (105), Expect = 6e-05
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
L LS+ + I + F + + L N LTS + L L N + +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-IL 539
Query: 122 PFTLTFCKNLTHLYLDNNLLD 142
P L + L N LD
Sbjct: 540 PSLLPILSQQRTINLRQNPLD 560
Score = 43.1 bits (102), Expect = 1e-04
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 8/106 (7%)
Query: 66 LSLSYTPIG---RRIFKCDTVEVLSLKSNSLTSLPP---DIGRLTNLRVLCLTDNCLQN- 118
L+L+ I F + L+ + + +L + D ++
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH 163
+ F ++ + L + + L + H
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 84 EVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
+VL ++N++ L D+ L L L N A I L
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 63.1 bits (154), Expect = 4e-11
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASI 121
L +S T I + + + T+ L L N + ++ + R + L L L N ++
Sbjct: 177 LRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE- 233
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+L+F L L+LDNN L +P L + L VY H N+
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275
Score = 57.3 bits (139), Expect = 3e-09
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTL 125
L + F + L + LT +P D+ L L L N +Q +I L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ--AIELEDL 213
Query: 126 TFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
L L L +N + + G L +P L ++ N
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Score = 55.8 bits (135), Expect = 9e-09
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 82 TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+L L++N ++ L D L +L L L +N + + + L LY+ N
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNH 113
Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
L +P L L + H N
Sbjct: 114 LVEIPPNLP--SSLVELRIHDNR 134
Score = 54.6 bits (132), Expect = 2e-08
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCK-NLTHLYLDNNLL 141
L + N + +P + L N+ + + N L+N+ F L +L + L
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-PGAFDGLKLNYLRISEAKL 184
Query: 142 DALPGFLLS 150
+P L
Sbjct: 185 TGIPKDLPE 193
Score = 52.7 bits (127), Expect = 8e-08
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L L +N ++ + L L+ L ++ N L IP L +L L + +N +
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV--EIPPNL-P-SSLVELRIHDNRIR 136
Query: 143 ALPGFLLS-MPQLDTVYRHGNH 163
+P + S + ++ + GN
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNP 158
Score = 50.8 bits (122), Expect = 3e-07
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 18/108 (16%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
L L + I T+ L L +N L+ +P + L L+V+ L N + +
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT--KV 279
Query: 122 PFTLTFC--------KNLTHLYLDNNLLDAL---PGFLLSMPQLDTVY 158
FC + L NN + P + +
Sbjct: 280 GVN-DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Score = 43.1 bits (102), Expect = 1e-04
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 66 LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDI-------GRLTNLRVLCLTDNC 115
L L + R + ++V+ L +N++T + + + + L +N
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
Query: 116 LQNASIPFTLTFC--KNLTHLYLDNN 139
+ + TF + + N
Sbjct: 306 VPYWEVQPA-TFRCVTDRLAIQFGNY 330
Score = 34.2 bits (79), Expect = 0.066
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 91 NSLTSLPPDIGRLT------NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
L SLPP + +LRV+ +D L+ ++P ++ + T L L NN + L
Sbjct: 14 PDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISEL 69
Query: 145 P-GFLLSMPQLDTVYRHGNH 163
+ L + N
Sbjct: 70 RKDDFKGLQHLYALVLVNNK 89
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 62.7 bits (153), Expect = 4e-11
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L + I L++L VL + N Q +P T +NLT L L L+
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
L S+ L + N+
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNN 210
Score = 61.6 bits (150), Expect = 1e-10
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASI-PFTLTFCKNLTHLYLDNN 139
+ L L+SN L SLP + +LT L L L+ N L + +L +L L N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 140 LLDALPGFLLSMPQLDTVYRHGNH 163
+ + L + QL+ + ++
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSN 112
Score = 59.3 bits (144), Expect = 6e-10
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 67 SLSYTPIGRRIF-KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
LS+ + +++ L L N + ++ + L L L + L+ S
Sbjct: 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122
Query: 126 TFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN 164
+NL +L + + G + L+ + GN
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Score = 53.9 bits (130), Expect = 3e-08
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
L L L L P L++L+VL ++ N S+ +L L N +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHI 235
Query: 142 DALPGFLLS--MPQLDTVYRHGN 162
L L + N
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQN 258
Score = 43.8 bits (104), Expect = 6e-05
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 66 LSLSY---TPIGRRIFKC-DTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L LS + F +++VL++ N+ SL L +L+VL + N + +
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM--T 237
Query: 121 IPFTL--TFCKNLTHLYLDNNLLD 142
F +L L L N
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261
Score = 32.7 bits (75), Expect = 0.19
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 29/90 (32%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
C E+ S LTS+P I P + T L L++N
Sbjct: 7 CSGTEI-RCNSKGLTSVPTGI---------------------P------SSATRLELESN 38
Query: 140 LLDALP-GFLLSMPQLDTVYRHGNHNYFKS 168
L +LP G + QL + N FK
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 63.5 bits (155), Expect = 5e-11
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+ L L + ++ L +L L LT N +Q+ P + + +L +L L
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLA 117
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
+L + + L + N
Sbjct: 118 SLESFPIGQLITLKKLNVAHNF 139
Score = 60.8 bits (148), Expect = 4e-10
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
E L L SL IG+L L+ L + N + + +P + NL H+ L N +
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 143 ALPGFLLS 150
+ L
Sbjct: 167 TITVNDLQ 174
Score = 59.7 bits (145), Expect = 1e-09
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L + + I LT+L L + N ++ ++ NLT L L L+
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
+ G ++ +L + N+
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNN 508
Score = 59.3 bits (144), Expect = 1e-09
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 12/124 (9%)
Query: 52 SHIWIPQYFSHAFL-----LSLSYTPIGR------RIFKCDTVEVLSLKSNSLTSLPPDI 100
+ F L L LS + +++ L L N + +
Sbjct: 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395
Query: 101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYR 159
L L+ L + L+ + + L +L + G L + L+T+
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 160 HGNH 163
GN
Sbjct: 456 AGNS 459
Score = 58.5 bits (142), Expect = 2e-09
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L L L + + L L++L ++ N L +L+ L N ++
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE 534
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
L N
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNS 556
Score = 52.7 bits (127), Expect = 1e-07
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 82 TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+ + + L N L L + L+ L L+ ++ +L++L L N
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNP 91
Query: 141 LDAL-PGFLLSMPQL 154
+ + PG + L
Sbjct: 92 IQSFSPGSFSGLTSL 106
Score = 50.8 bits (122), Expect = 5e-07
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 66 LSLSY---TPIGRRIFKCDT-VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
L+Y F C V +SL S+ L + L + L+
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLK--QF 322
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYF 166
P L L L N +++P L + N F
Sbjct: 323 PTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSF 364
Score = 50.4 bits (121), Expect = 8e-07
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
L LS I +F +++L++ N+L L +L +L L + N ++ S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-S 536
Query: 121 IPFTLTFCKNLTHLYLDNNLLD 142
F K+L L NN +
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558
Score = 44.6 bits (106), Expect = 5e-05
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
L+ +P DI ++ + + L+ N L+ ++ + L L L ++ +
Sbjct: 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETI 71
Query: 145 -PGFLLSMPQLDTVYRHGNH 163
+ L + GN
Sbjct: 72 EDKAWHGLHHLSNLILTGNP 91
Score = 44.6 bits (106), Expect = 5e-05
Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 7/92 (7%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L + N + + + L L L N + + L L L
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 144 L-------PGFLLSMPQLDTVYRHGNHNYFKS 168
P + + + + S
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275
Score = 44.6 bits (106), Expect = 6e-05
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 6/90 (6%)
Query: 82 TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
T++ L + S L N+ + L + + L +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQ 318
Query: 141 LDALPGFLLSMPQLDTVYRHGNHNYFKSTF 170
L P L +P L ++ N
Sbjct: 319 LKQFPT--LDLPFLKSLTLTMNKGSISFKK 346
Score = 34.6 bits (80), Expect = 0.064
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 95 SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQ 153
SL P I + N+ C D L +P + + ++ L N L L + +
Sbjct: 3 SLNPCIEVVPNITYQC-MDQKLS--KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 154 LDTVYRHGNH 163
L +
Sbjct: 58 LQWLDLSRCE 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 63.1 bits (154), Expect = 5e-11
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCL---------------QNASIPFTLTFC 128
E L NSLT LP L +L V L Q +P L
Sbjct: 94 ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNS 152
Query: 129 KNLTHLYLDNNLLDALPGFLLSMPQLD 155
L + +DNN L LP S+ +
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPSLEFIA 179
Score = 61.9 bits (151), Expect = 1e-10
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ ++++ + +NSL LP +L + +N L+ +P L LT +Y
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLE--ELP-ELQNLPFLTAIYA 202
Query: 137 DNNLLDALPGFLLSMPQLD 155
DNN L LP LS+ +
Sbjct: 203 DNNSLKKLPDLPLSLESIV 221
Score = 61.6 bits (150), Expect = 2e-10
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
L+ S I ++E L++ +N L LP L L + N L +P
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLA--EVPELP 356
Query: 126 TFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
NL L+++ N L P S+ L
Sbjct: 357 Q---NLKQLHVEYNPLREFPDIPESVEDLR 383
Score = 56.5 bits (137), Expect = 7e-09
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + + +NSL LP +L + +N L+ +P L LT +Y
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILE--ELP-ELQNLPFLTTIYA 244
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
DNNLL LP P L+ + N+
Sbjct: 245 DNNLLKTLPDLP---PSLEALNVRDNY 268
Score = 56.5 bits (137), Expect = 7e-09
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
E + +N L LP ++ L L + +N L+ ++P +L L + +N L
Sbjct: 218 ESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK--TLPDLPP---SLEALNVRDNYLTD 271
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
LP S+ LD +
Sbjct: 272 LPELPQSLTFLDVSENIFSG 291
Score = 55.0 bits (133), Expect = 2e-08
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
+ L ++ N L P + +LR+ A +P +NL L+++ N L
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNS------HLAEVP---ELPQNLKQLHVETNPLRE 410
Query: 144 LPGFLLSMPQLD 155
P S+ L
Sbjct: 411 FPDIPESVEDLR 422
Score = 54.2 bits (131), Expect = 3e-08
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT--------- 126
R ++ S++LT +P + + + + + + P
Sbjct: 6 RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65
Query: 127 ---FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ L L+N L +LP P L+++ N
Sbjct: 66 RDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNS 102
Score = 53.8 bits (130), Expect = 5e-08
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
E L+++ N LT LP LT L V + L NL +L +N + +
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRS 311
Query: 144 LPGFLLSMPQLD 155
L S+ +L+
Sbjct: 312 LCDLPPSLEELN 323
Score = 50.4 bits (121), Expect = 7e-07
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 19/106 (17%)
Query: 64 FLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRL--------------TNLRVL 109
+ T + ++V + L+ LPP++ L +L L
Sbjct: 263 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322
Query: 110 CLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
+++N L +P L L N L +P ++ QL
Sbjct: 323 NVSNNKLI--ELPALPP---RLERLIASFNHLAEVPELPQNLKQLH 363
Score = 45.4 bits (108), Expect = 2e-05
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+ L +++N L P + +LR + + + F L +++
Sbjct: 399 KQLHVETNPLREFPDIPESVEDLR---MNSERVVD-PYEFAHETTDKLEDDVFEHHHH 452
Score = 36.1 bits (84), Expect = 0.018
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 96 LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQL 154
+ P T L+ + L +P K+ T Y + P ++
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 155 D 155
Sbjct: 61 A 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 63.6 bits (155), Expect = 5e-11
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L + I L++L VL + N Q +P T +NLT L L L+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
L S+ L + N
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQ 505
Score = 60.9 bits (148), Expect = 3e-10
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 66 LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
L L+ + F +++ L +L SL IG L L+ L + N +Q+
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN--HNYFKS 168
+P + NL HL L +N + ++ L + Q+ + + N
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Score = 59.7 bits (145), Expect = 8e-10
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 65 LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI-PF 123
L++ + K +++ L+ SN + ++ L +L L L+ N L
Sbjct: 311 LVNCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQ 367
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ +L +L L N + + L + QL+ + ++
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Score = 59.7 bits (145), Expect = 8e-10
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 66 LSLSYTPIGRR------IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA 119
L LS + + F +++ L L N + ++ + L L L + L+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
S +NL +L + + G + L+ + GN
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Score = 55.5 bits (134), Expect = 2e-08
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNN 139
+ + L L N L L L+VL L+ +Q +I +L+ L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGN 86
Query: 140 LLDALP-GFLLSMPQLDTVYRHGNH 163
+ +L G + L + +
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETN 111
Score = 53.2 bits (128), Expect = 1e-07
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 84 EVLSLKSNSLT-SLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNL 140
EVL + NS + PDI L NL L L+ L+ + +L L + +N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASNQ 505
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L ++P G + L ++ H N
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTN 528
Score = 49.3 bits (118), Expect = 1e-06
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
L L L L P L++L+VL + N L+ S+P +L ++L N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK--SVPDGIFDRLTSLQKIWLHTNPW 530
Query: 142 D 142
D
Sbjct: 531 D 531
Score = 44.7 bits (106), Expect = 5e-05
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
L I V SL S ++ + + L L + F
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQ----FPT 321
Query: 126 TFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKST 169
K+L L +N + +P L+ + N FK
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGC 364
Score = 44.3 bits (105), Expect = 5e-05
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 7/128 (5%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD-------N 138
L L N + + P + L L L +N + + L L
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLH 198
NL L + L + + + + + S S + + K
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 199 QPSRLQDL 206
Q L
Sbjct: 302 YNFGWQHL 309
Score = 44.3 bits (105), Expect = 6e-05
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLDA 143
+ +P ++ + + L L+ N L+ + ++ L L L +
Sbjct: 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 144 LP-GFLLSMPQLDTVYRHGNH 163
+ G S+ L T+ GN
Sbjct: 67 IEDGAYQSLSHLSTLILTGNP 87
Score = 43.5 bits (103), Expect = 1e-04
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 84 EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT----HLYLD 137
+ L++ N + S LTNL L L+ N +Q+ L + L L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLS 185
Query: 138 NNLLDALPGFLLSMPQLDTVYRHGNHN 164
N ++ + +L + N +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFD 212
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 63.4 bits (154), Expect = 5e-11
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 66 LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L+LS + +F+C V+VL L +N + S+P D+ L L+ L + N L+ S+P
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK--SVPD 490
Query: 124 -TLTFCKNLTHLYLDNN 139
+L +++L +N
Sbjct: 491 GVFDRLTSLQYIWLHDN 507
Score = 62.6 bits (152), Expect = 1e-10
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 85 VLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
VL L N + SL + +L L ++ N LQ +I +L HL L N D
Sbjct: 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCCPM--ASLRHLDLSFNDFDV 135
Query: 144 LP--GFLLSMPQLDTVYRHGN 162
LP ++ +L +
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAA 156
Score = 51.8 bits (124), Expect = 3e-07
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 65 LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLT-NLRVLCLTDNCLQNASIPF 123
L SL+ R +++ VL+L SN LT L ++VL L +N + SIP
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM--SIPK 467
Query: 124 TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
+T + L L + +N L ++P G + L ++ H N
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 51.4 bits (123), Expect = 4e-07
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTF--CKNLTHLYLDNNLL 141
E L + N L ++ + +LR L L+ N +P F LT L L
Sbjct: 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFD--VLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 142 DALPGFLLSMPQLDTVYRHGNHNYFKS 168
L ++ L + + K
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKG 185
Score = 51.0 bits (122), Expect = 5e-07
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 25/104 (24%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN---------ASIPFTLTF------- 127
+ L L+ N L + N+ L D L + + ++
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439
Query: 128 ---------CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
+ L L NN + ++P + + L + N
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483
Score = 49.5 bits (118), Expect = 1e-06
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 81 DTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
++ + +K+ + + + L+ + + + + T L N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS-PSSFTFLNFTQN 363
Query: 140 LLDALP-GFLLSMPQLDTVYRHGNH 163
+ ++ +L T+ N
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNG 388
Score = 46.8 bits (111), Expect = 1e-05
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 78 FKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ L+ N T L L+ L L N L+ + KN++ L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--NFFKVALMTKNMSSLET 407
Query: 137 DNNLLDALP 145
+ L++L
Sbjct: 408 LDVSLNSLN 416
Score = 46.0 bits (109), Expect = 2e-05
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDN 138
+ ++ + +LT +P D+ + L L+ N + + ++F L L L +
Sbjct: 30 NELESMVDYSNRNLTHVPKDL--PPRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSH 85
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNH 163
N + +L L L+ + N
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNR 111
Score = 43.7 bits (103), Expect = 1e-04
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 86 LSLKSNSLTSLPP--DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L L N LP + G LT L L L+ + + +L+ + LD
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR--QLDLLPVAHLHLSCILLDLVSYHI 183
Query: 144 LPGFLLSMPQLDTVYRHGNHN 164
G S+ +T H +
Sbjct: 184 KGGETESLQIPNTTVLHLVFH 204
Score = 42.2 bits (99), Expect = 3e-04
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 4/83 (4%)
Query: 83 VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFC-KNLTHLYLDNNL 140
+ + L + + ++ L T N F K L L L N
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT--DSVFQGCSTLKRLQTLILQRNG 388
Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
L L + ++
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVS 411
Score = 30.6 bits (69), Expect = 1.0
Identities = 18/148 (12%), Positives = 37/148 (25%), Gaps = 10/148 (6%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT--HLYLDNNLL 141
L L + L +L + L N T HL N L
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208
Query: 142 DALPGF-----LLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHAR---IRSTSTRDEVLRK 193
++ L + + N + ++ T + K
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 194 QKKLHQPSRLQDLAVQSVIASKENFFEP 221
+ P ++ L + ++ ++ E
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREE 296
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 63.2 bits (154), Expect = 6e-11
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 66 LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L+LS T I R + C T+EVL + +N+L S L L+ L ++ N L+ ++P
Sbjct: 415 LNLSSTGI-RVVKTCIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLK--TLPD 468
Query: 124 TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
+ L + + N L ++P G + L ++ H N
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 57.0 bits (138), Expect = 6e-09
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L +S P+ + + L+L S + + I L VL +++N L S
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLD--SFS 447
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L L LY+ N L LP L P L + N
Sbjct: 448 LFLP---RLQELYISRNKLKTLPDASL-FPVLLVMKISRNQ 484
Score = 54.3 bits (131), Expect = 5e-08
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L + N+ +P +R L L+ ++ + + + L L + NN LD+
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR--VVKTCIP--QTLEVLDVSNNNLDS 445
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
FL P+L +Y N
Sbjct: 446 FSLFL---PRLQELYISRNK 462
Score = 54.0 bits (130), Expect = 5e-08
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLL 141
E L L N L+SL G L++L+ L L N Q + NL L + +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
+ + L+ +
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALS 159
Score = 54.0 bits (130), Expect = 5e-08
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 26/108 (24%)
Query: 80 CDTVEVLSLKSNSLTSLPPDI----------------------GRLTNLRVLCLTDNCLQ 117
CD V +S S TS+P + NL+VL L + +
Sbjct: 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 118 NASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
+I +L HL L +N L +L + + L + GN
Sbjct: 64 --TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 53.6 bits (129), Expect = 7e-08
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 16/128 (12%)
Query: 52 SHIWIPQYFSHAFL-------LSLSYTPIG---RRIFK-CDTVEVLSLKSNSLTSLPPD- 99
++ S + +++ + + + ++E L L N +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
Query: 100 ---IGRLTNLRVLCLTDNCLQN-ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
G +L+ L L+ N L++ L KNLT L + N +P ++
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413
Query: 156 TVYRHGNH 163
+
Sbjct: 414 FLNLSSTG 421
Score = 50.9 bits (122), Expect = 5e-07
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 84 EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+ L+L N +L LTNL+ L + + + +L L + L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 142 DAL-PGFLLSMPQLDTVYRHGNHNYF 166
L S+ + + H + + F
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAF 186
Score = 49.7 bits (119), Expect = 1e-06
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNN 139
T+ L + L + L ++ + + ++ + +P K+L L L N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSEN 344
Query: 140 LLDAL----PGFLLSMPQLDTVYRHGNH 163
L+ + P L T+ NH
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Score = 40.9 bits (96), Expect = 7e-04
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 84 EVLSLKS-NSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+ L + + + + + D LT+L L + L+N +L +++ HL L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSES 184
Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
L + + + +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTN 207
Score = 37.8 bits (88), Expect = 0.006
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQ--NASIPFTLTFCKNLTHLYLDNNL 140
L+L + L L+++R L L D L S + L ++
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234
Query: 141 LDALPGFLLSMPQLDTVYRHGNHNYF 166
L + +L + F
Sbjct: 235 L--TDESFNELLKLLRYILELSEVEF 258
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 61.7 bits (150), Expect = 7e-11
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
L LK N L +LPP + L L L +N L +P L NL L L N
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLE---NLDTLLLQENS 183
Query: 141 LDALPGFLLSMPQLDTVYRHGN 162
L +P L + HGN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
Score = 58.2 bits (141), Expect = 1e-09
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNN 139
L L N L SLP L L VL ++ N L S+P L L LYL N
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLG---ELQELYLKGN 134
Query: 140 LLDALP-GFLLSMPQLDTVYRHGNH 163
L LP G L P+L+ + N+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNN 159
Score = 57.0 bits (138), Expect = 3e-09
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+L L N L + T L L L L + TL L L L +N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQ 88
Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
L +LP ++P L + N
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNR 111
Score = 55.9 bits (135), Expect = 7e-09
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
+EV + +LT+LPPD+ + +L L++N L S TL LT L LD
Sbjct: 10 ASHLEV-NCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA 65
Query: 140 LLDALPGFLLSMPQLDTVYRHGNH 163
L L ++P L T+ N
Sbjct: 66 ELTKLQVD-GTLPVLGTLDLSHNQ 88
Score = 30.5 bits (69), Expect = 0.89
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN 114
+ L L+ NSL ++P L L N
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 60.6 bits (147), Expect = 8e-11
Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 44/168 (26%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ F R+ GT+ ++EL + G+ + + M
Sbjct: 52 RIYQWFMGVDRDRSGTL-EINELMMGQFPGGIRLSPQTALR-----------------M- 92
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
+ DT +G +SF +F+ + + F +
Sbjct: 93 ---------------MRIFDTDFNGHISFYEFMAMYKFMEL-------AYNLFVMNARAR 130
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
SGT+ + L G ++ + + R + ++ I
Sbjct: 131 SGTLEPHEILPALQQLGFYINQRTSLLLHR-LFARGMAFCDLNCWIAI 177
Score = 45.9 bits (109), Expect = 6e-06
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
+ + + F D +SGT+ L G LS + ++ R
Sbjct: 38 WFPLLNTIPLDQYT-RIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIF 96
Query: 417 NVTMNSKVRYEDFVK 431
+ N + + +F+
Sbjct: 97 DTDFNGHISFYEFMA 111
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 57.9 bits (140), Expect = 8e-11
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 350 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 409
+ D L +H + + F+ DT K+ T+ + + + + L+ ++
Sbjct: 5 ATADRDILARLHKAVTSHY--HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQF 62
Query: 410 DQIFREANVTMNSKVRYEDFVK 431
D+++ E V +++Y DF+
Sbjct: 63 DRLWNEMPVNAKGRLKYPDFLS 84
Score = 35.9 bits (83), Expect = 0.004
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVMHTHSKA 366
K +S +F + + + + E D + G+L +PDFL + + A
Sbjct: 36 MKTNTISREEFRAICNRRV--QILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAA 92
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 62.5 bits (152), Expect = 1e-10
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 56 IPQYFSHAFLLSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLC 110
+ +F+ L+L+ I F + L+L N L S+ + L L VL
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353
Query: 111 LTDNCLQNASIP---FT-LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
L+ N ++ ++ F L NL L LD N L ++P G + L ++ H N
Sbjct: 354 LSYNHIR--ALGDQSFLGLP---NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 59.8 bits (145), Expect = 6e-10
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 83 VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTF--CKNLTHLYLDNN 139
V+ L + + +L + T+L L L N + I F +L L L N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN--KID-DNAFWGLTHLLKLNLSQN 333
Query: 140 LLDALPGFLL-SMPQLDTVYRHGNH 163
L ++ + ++ +L+ + NH
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNH 358
Score = 59.0 bits (143), Expect = 1e-09
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 66 LSLSY---TPIGRRIFKCDT-VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
LS + + +F T +E L+L N + + + LT+L L L+ N L S
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--S 337
Query: 121 IP-FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
I L L L N + AL L +P L + N
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Score = 54.8 bits (132), Expect = 3e-08
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 82 TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
V + L NS+ L RL +L+ L + T +L L LD N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
L G + L+ + +
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCN 114
Score = 51.3 bits (123), Expect = 4e-07
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 66 LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L+LS I R+F D +EVL L N + +L L NL+ L L N L+ S
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK--S 385
Query: 121 IPF-TLTFCKNLTHLYLDNNLLD 142
+P +L ++L N D
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408
Score = 47.0 bits (112), Expect = 7e-06
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 84 EVLSLKSNSLTS--LPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDN 138
EVL+L +L L + LT+L +L L DN ++ I F L L
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--KIQPASFFLNMRRFHVLDLTF 163
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNHNYFKS 168
N + ++ LL+ + +
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 78 FKCDTVEVLSLKSNSLTSLPP----DIGRLTNLRVLCLTDNCLQNASIPFT-------LT 126
FK ++ L L N D T ++ L L+++ +S T T
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 127 F----CKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
F + L + + AL L+ + N
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 62.6 bits (152), Expect = 1e-10
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
+ LSY I F +E L + +N L +L + L+VL L+ N L +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HV 316
Query: 122 PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLD 155
L +LYLD+N + L ++ L
Sbjct: 317 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351
Score = 57.6 bits (139), Expect = 4e-09
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
++++ K++++ LP + + +L L D ++ I + + + LY+ N +
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAI 111
Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
LP ++P L + N
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERND 134
Score = 56.5 bits (136), Expect = 1e-08
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
E+L+L + + ++ L + N ++ +P LT L L+ N L
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDL 135
Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
+LP + P+L T+ N+
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNN 158
Score = 56.1 bits (135), Expect = 1e-08
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 57 PQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCL 116
F ++SY + + VE L NS+ + + L +L L N L
Sbjct: 188 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNL 244
Query: 117 QNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
+ + L L + L N L+ + + M +L+ +Y N
Sbjct: 245 TDTA---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Score = 56.1 bits (135), Expect = 1e-08
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
VL L+ N L+SLP I L L +++N L+ I T +L +L L +N L
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--RIEDDTFQATTSLQNLQLSSNRL 183
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
+ L+ P L N
Sbjct: 184 THVDLSLI--PSLFHANVSYNL 203
Score = 53.4 bits (128), Expect = 8e-08
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 22/117 (18%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
LS+S I F+ +++ L L SN LT + + +L ++ N L +I
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAI 209
Query: 122 PFTLT---------------FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
P + LT L L +N L L+ P L V N
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNE 265
Score = 52.6 bits (126), Expect = 2e-07
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L +S + T++VL L N L + + + L L L N + ++
Sbjct: 283 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV--TLK 340
Query: 123 FTLTFCKNLTHLYLDNNLL--DALPGFLLSMPQL 154
+ T L +L L +N ++L ++ +
Sbjct: 341 LS-TH-HTLKNLTLSHNDWDCNSLRALFRNVARP 372
Score = 36.8 bits (85), Expect = 0.014
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 92 SLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLS 150
+ ++ + + Q+ F N + N+ + LP L S
Sbjct: 15 EYKCIDSNLQYDCVFYDVHIDMQT-QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 73
Query: 151 MPQLDTVYRHGNH 163
Q++ + +
Sbjct: 74 FRQVELLNLNDLQ 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 62.7 bits (153), Expect = 1e-10
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L + N+++ L P+ +L L+VL L N L T FC NLT L+L +N +
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQ 110
Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
+ + L T+ N
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNG 132
Score = 61.2 bits (149), Expect = 3e-10
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L L SNS+ + + + NL L L+ N L + + T +NL L L NN +
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ 158
Query: 143 ALPG---FLLSMPQLDTVYRHGNH 163
AL + + L + N
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQ 182
Score = 60.4 bits (147), Expect = 5e-10
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 82 TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+ VL+L N L LP + R + L L + N + P L L L +N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNE 84
Query: 141 LDALPGFLLS 150
L L +
Sbjct: 85 LSQLSDKTFA 94
Score = 59.6 bits (145), Expect = 9e-10
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 66 LSLSYTPIGRRI----FK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQN- 118
L L IG+ + ++ + + + L N L + + +L+ L L L+N
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
S P +NLT L L NN + + L + +L+ + N+
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Score = 58.5 bits (142), Expect = 2e-09
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+L+L N ++ + D L +L VL L N + +N+ +YL N
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
L +P L +
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVA 465
Score = 57.3 bits (139), Expect = 5e-09
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 66 LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQ--- 117
L LSY +G F +E L+ N++ L + L N+R L L + +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 118 -----NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNHNYFKS 168
F+ + K L HL +++N + + + + + L + + ++
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Score = 55.4 bits (134), Expect = 2e-08
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 79 KCDTV-EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
KC EV LT +P D+ TN+ VL LT N L+ T LT L +
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVG 57
Query: 138 NNLLDAL-PGFLLSMPQLDTVYRHGNH 163
N + L P +P L + N
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNE 84
Score = 53.9 bits (130), Expect = 6e-08
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 66 LSLSY------TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQN 118
L LS IF +++ L L SN + P + L L L + L
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL-G 208
Query: 119 ASIPFTLTF---CKNLTHLYLDNNLLDALP 145
S+ L ++ +L L N+ L
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Score = 52.3 bits (126), Expect = 2e-07
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FTLTFCKNLT 132
+E L+++ N + + ++ L NL+ L L+++ ++ F L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384
Query: 133 HLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH 163
L L N + + + L+ + N
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Score = 51.9 bits (125), Expect = 3e-07
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 66 LSLSYTPIGRRI-------FKCDTVEVLSLKSNSLTSLPPDIG---RLTNLRVLCLTDNC 115
L L+ +G + ++ LSL ++ L++ + TNL +L L+ N
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGN 162
L + + L + +L+ N + L L + + + +
Sbjct: 260 LNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Score = 51.5 bits (124), Expect = 4e-07
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQN-------ASIPFTLTFCKNLTHLY 135
+L L +N++ ++ D + L L +L L N L + L +L L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 136 LDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
L++N D +P + + +L + N+
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNN 571
Score = 49.2 bits (118), Expect = 2e-06
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L+L I +FK ++++ L N+L +LP + +L+ L L N + +
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 121 IPFTLTFCKNLTHLYLDNNLL----DALPGFLLSMPQLDTVYRHGNHNYF 166
+NLT L + N +++ F+ + + T + +Y
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 61.8 bits (150), Expect = 2e-10
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 85 VLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
+L + N + L + L L L+ N L I T NL HL L N DA
Sbjct: 49 ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--KISCHPT--VNLKHLDLSFNAFDA 104
Query: 144 LP--GFLLSMPQLDTVYRHGNH 163
LP +M QL + H
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTH 126
Score = 60.3 bits (146), Expect = 5e-10
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 82 TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNN 139
+L++ N ++ L DI L+ LR+L ++ N +Q + F + L +L L +N
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHN 79
Query: 140 LLDALP-GFLLSMPQLDTVYRHGNHNYFKS 168
L + +++ LD + N F +
Sbjct: 80 KLVKISCHPTVNLKHLDL-----SFNAFDA 104
Score = 59.9 bits (145), Expect = 8e-10
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 66 LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP- 122
L++S + IF+C ++VL L SN + S+P + +L L+ L + N L+ S+P
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK--SVPD 461
Query: 123 FTLTFCKNLTHLYLDNNLLD 142
+L ++L N D
Sbjct: 462 GIFDRLTSLQKIWLHTNPWD 481
Score = 55.3 bits (133), Expect = 2e-08
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 84 EVLSLKSNSLTSLPPDIG---RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
E L L+ N L L ++ +L+ L ++ N + ++ K+L L + +N+
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Query: 141 LDALPGFLLSMPQLDTVYRHGN------HNYFKST 169
L L P++ + H N K
Sbjct: 411 LTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLE 444
Score = 51.8 bits (124), Expect = 2e-07
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L++ SN LT ++VL L N ++ SIP + + L L + +N L +
Sbjct: 402 LSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKS 458
Query: 144 LP-GFLLSMPQLDTVYRHGN 162
+P G + L ++ H N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478
Score = 51.4 bits (123), Expect = 3e-07
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLL 141
E L L N L + NL+ L L+ N ++P F L L L L
Sbjct: 72 EYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFD--ALPICKEFGNMSQLKFLGLSTTHL 127
Query: 142 DALP-GFLLSMPQLDTVYRHGNHNYFKSTF 170
+ + + + G K
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDP 157
Score = 47.6 bits (113), Expect = 6e-06
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 83 VEVLSLKSNSLTSLP-PDIGRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDNN 139
+ + + + + +++ L ++N L + LT L L L N
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT---ELETLILQMN 358
Query: 140 LLDALP---GFLLSMPQLDTVYRHGNH 163
L L M L + N
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNS 385
Score = 45.6 bits (108), Expect = 2e-05
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 79 KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
+ + + S+ I +N+ + T + + + + HL
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFS 332
Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGNH 163
NNLL + +L+T+ N
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQ 359
Score = 31.8 bits (72), Expect = 0.46
Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 16/152 (10%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD-----N 138
+ L L + L + +L + + + ++ L N
Sbjct: 118 KFLGLSTTHLEKSSVLP--IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 139 NLLDALPGF------LLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHAR---IRSTSTRDE 189
+ L + + V +YF S ++ + + T
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 190 VLRKQKKLHQPSRLQDLAVQSVIASKENFFEP 221
+ +L + + ++ +V + F
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 59.4 bits (144), Expect = 2e-10
Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 30/182 (16%)
Query: 276 ARNGTIKTLDELSVIMRSLGMSPT-IAELKK---YLAEKG-GKLSFPDFLKVMHTHSKAE 330
+R T+ +EL I + G S + I L L + G LS DF ++
Sbjct: 3 SRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPE--LAIN 60
Query: 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD--------------- 375
+ +++AF + +++F F++ + ED K
Sbjct: 61 PLGDRIINAF---FSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHF 117
Query: 376 AFKAADTTKSGTVPAKYLKHVLV-NWGEGLSSKE----VDQIFREANVTMNSKVRYEDFV 430
AF+ D K + L VL G +S ++ D+ +EA+ +S + + +FV
Sbjct: 118 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 177
Query: 431 KI 432
K+
Sbjct: 178 KV 179
Score = 39.8 bits (93), Expect = 8e-04
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 258 VFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA------EKG 311
F+ + FR F+ D + K + A +K
Sbjct: 70 FFSEGEDQVNFRG--FMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKD 127
Query: 312 GKLSFPDFLKVMHTHSKA---EDIPKEVVD-AFKAADTTKSGKLSFPDFLKVM 360
K+S + L+V+ ++ + D + AD +SF +F+KV+
Sbjct: 128 DKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 60.4 bits (147), Expect = 2e-10
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
L L L L P + L L+ L L DN LQ ++P T NLTHL+L N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLGNLTHLFLHGNRI 165
Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
++P + LD + H N
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNR 188
Score = 60.0 bits (146), Expect = 3e-10
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
L L N ++S+P L +L L L N + + L LYL N L
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNL 213
Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
ALP L + L + + N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235
Score = 54.6 bits (132), Expect = 2e-08
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
+ L + + F+ C + +L L SN L + L L L L+DN Q S
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRS 95
Query: 121 IPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
+ T L L+LD L L G + L +Y N
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Score = 43.1 bits (102), Expect = 1e-04
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
+ L L N + + P L L L L N L ++P L + L +L L++N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNPW 237
Query: 142 D 142
Sbjct: 238 V 238
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 56.0 bits (136), Expect = 2e-10
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 407
SG + D K M E+I + + FK DT SGT+ LK L G L
Sbjct: 3 SGHIDDDD--KHMAERLSEEEI-GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES 59
Query: 408 EVDQIFREANVTMNSKVRYEDFVKI 432
E+ + A++ + + Y +F+
Sbjct: 60 EIKDLMDAADIDKSGTIDYGEFIAA 84
Score = 55.6 bits (135), Expect = 3e-10
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
+E F + + GTI T DEL ++ +G +E+K + K G + + +F+
Sbjct: 24 GLKELFKMIDTDNSGTI-TFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 82
Query: 321 KVM 323
Sbjct: 83 AAT 85
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 55.7 bits (135), Expect = 3e-10
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
D +E+ +AFK D ++G + A L+HV++N GE L+ +EV+Q+ +EA++ + +V Y
Sbjct: 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 64
Query: 427 EDFVKI 432
E+FVK+
Sbjct: 65 EEFVKM 70
Score = 53.8 bits (130), Expect = 2e-09
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
E +E F +F + NG I + EL +M +LG T E+++ + E G++++ +F+
Sbjct: 10 ELKEAFKVFDKDQNGYI-SASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 68
Query: 321 KVMHTHSK--AEDIPKEVVDAFKA 342
K+M T + + F +
Sbjct: 69 KMMMTVRGGGGGNGWSRLRRKFSS 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 60.9 bits (148), Expect = 3e-10
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 55 WIP-QYFSHAFLLSLSYTPIGRRIF-KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLT 112
W P F+ + + T+ L ++S+T + I +LT L L T
Sbjct: 14 WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICT 72
Query: 113 DNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
N + ++ + NLT+L D+N L L + + +L + N
Sbjct: 73 SNNIT--TLDLSQ--NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117
Score = 58.2 bits (141), Expect = 2e-09
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
+L ++ +T L D+ + L L L + L + ++ L L N +
Sbjct: 300 YLLDCQAAGITEL--DLSQNPKLVYLYLNNTELT--ELD--VSHNTKLKSLSCVNAHIQD 353
Query: 144 LPGFLLSMPQLDTVYRHGN 162
+ +P L+ +
Sbjct: 354 FSS-VGKIPALNNNFEAEG 371
Score = 56.6 bits (137), Expect = 7e-09
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + + L+ SN LT+L + LT L L N L + + LT+L
Sbjct: 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT--KLDVSQ--NPLLTYLNC 134
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNHN 164
N L + + QL + H N
Sbjct: 135 ARNTLTEID--VSHNTQLTELDCHLNKK 160
Score = 55.8 bits (135), Expect = 1e-08
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + L N +T L D+ + L L N + + LT L
Sbjct: 166 VTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNIT--KLDLNQ--NIQLTFLDC 219
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
+N L + + + QL N
Sbjct: 220 SSNKLTEID--VTPLTQLTYFDCSVNP 244
Score = 55.5 bits (134), Expect = 1e-08
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + + L+ +N++T L D+ + L L + N L I T LT+
Sbjct: 187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT--EIDVTP--LTQLTYFDC 240
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
N L L + ++ +L T++
Sbjct: 241 SVNPLTELD--VSTLSKLTTLHCIQTD 265
Score = 53.5 bits (129), Expect = 7e-08
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L SN LT + D+ LT L + N L + + LT L+ L
Sbjct: 215 TFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLT--ELDVST--LSKLTTLHCIQTDLLE 268
Query: 144 LPGFLLSMPQLDTVYRHGNHN 164
+ L QL G
Sbjct: 269 ID--LTHNTQLIYFQAEGCRK 287
Score = 51.2 bits (123), Expect = 4e-07
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 27/119 (22%)
Query: 66 LSLSYTPIGR-RIFKCDTVEVLSLKSNSLTSLP--------------------PDIGRLT 104
S P+ + + L L + D+ T
Sbjct: 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297
Query: 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L +L + + + L +LYL+N L L + +L ++ H
Sbjct: 298 QLYLLDCQAAGIT--ELDLS--QNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350
Score = 50.8 bits (122), Expect = 4e-07
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + + L L + LT L D+ T L+ L + +Q ++ L + +
Sbjct: 314 LSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQ--DFS-SVGKIPALNNNFE 368
Query: 137 DNNLLDALPGFLLSMPQL 154
+P L+ L
Sbjct: 369 AEGQTITMPKETLTNNSL 386
Score = 48.5 bits (116), Expect = 2e-06
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 66 LSLSYTPIGR-RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT 124
L+ + + + + L N + D+ T L L + N +
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE----LD 186
Query: 125 LTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
++ K L L D N + L L QL + N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN 222
Score = 28.1 bits (63), Expect = 6.5
Identities = 6/64 (9%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ K + ++P + +L + ++ + L P + +
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSL-TIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415
Query: 137 DNNL 140
N +
Sbjct: 416 TNTI 419
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 60.2 bits (146), Expect = 4e-10
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 82 TVEVLSLKSNSLTSLPPDI--GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDN 138
+L L N+L+ L + RLTNL L L+ N L I NL +L L +
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSS 97
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNH 163
N L L + L+ + + NH
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNH 123
Score = 55.2 bits (133), Expect = 1e-08
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
L L N L + + + NLR L L+ N L ++ F + + L L L NN +
Sbjct: 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFSDLQALEVLLLYNNHI 124
Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
+ M QL +Y N
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQ 147
Score = 55.2 bits (133), Expect = 1e-08
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 66 LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L LS+ I F + L L SN L +L + L L VL L +N +
Sbjct: 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--V 126
Query: 121 IPFTLTFCK--NLTHLYLDNNLLDALP----GFLLSMPQLDTVYRHGNH 163
+ F L LYL N + P +P+L + N
Sbjct: 127 VD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174
Score = 48.7 bits (116), Expect = 2e-06
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
EVL L +N + + + + L+ L L+ N + P L L L +
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSS 172
Query: 139 NLLDALP-GFLLSMPQL--DTVYRHGN 162
N L LP L +P + +Y H N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 42.5 bits (100), Expect = 2e-04
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFC--KNLTHLYLD 137
C + + S L ++P + + +L L+ N L + T NL L L
Sbjct: 18 CASNIL-SCSKQQLPNVPQSL--PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLS 72
Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGNH 163
+N L+ + + +P L + NH
Sbjct: 73 HNHLNFISSEAFVPVPNLRYLDLSSNH 99
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 55.3 bits (134), Expect = 4e-10
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 40/113 (35%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ F F N G I + EL +++LG T E+++ +AE
Sbjct: 12 DRERIFKRFDTNGDGKI-SSSELGDALKTLGS-VTPDEVRRMMAE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF 377
DT G +SF +F + K+V F
Sbjct: 55 ------------------IDTDGDGFISFDEFTDFA---RANRGLVKDVSKIF 86
Score = 40.7 bits (96), Expect = 5e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 360 MHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT 419
M +DI + FK DT G + + L L G ++ EV ++ E +
Sbjct: 1 MAAEDTPQDI-ADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTD 58
Query: 420 MNSKVRYEDFVKI 432
+ + +++F
Sbjct: 59 GDGFISFDEFTDF 71
Score = 29.1 bits (66), Expect = 0.64
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT 382
M +DI + FK DT GK+S + + + P EV DT
Sbjct: 1 MAAEDTPQDI-ADRERIFKRFDTNGDGKISSSELGDAL--KTLGSVTPDEVRRMMAEIDT 57
Query: 383 TKSGTV 388
G +
Sbjct: 58 DGDGFI 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 59.5 bits (145), Expect = 5e-10
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LSL+Y I + ++ + N +T + P + +T L L + +N + +
Sbjct: 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT--DLSP 238
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L LT L + N + + + +L + N
Sbjct: 239 -LANLSQLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQ 276
Score = 58.3 bits (142), Expect = 1e-09
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L+L+ I + + L + +N +T + + LTNLR L L ++ + I
Sbjct: 71 LNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNIS--DISP 127
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L + L L N + L +M L+ + +
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166
Score = 57.2 bits (139), Expect = 3e-09
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 66 LSLSYTPIGRRIFK---CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L+ PI + IF L+ S+T + L ++ L + + SI
Sbjct: 5 LATLPAPINQ-IFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVA--SIQ 60
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ + NL +L L+ N + + L ++ +L +Y N
Sbjct: 61 G-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99
Score = 57.2 bits (139), Expect = 4e-09
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
++L++ SN ++ + + L+ L L L +N L N + NLT L+L N +
Sbjct: 268 KMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITD 325
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
+ L S+ ++D+
Sbjct: 326 IRP-LASLSKMDSADFANQV 344
Score = 56.8 bits (138), Expect = 5e-09
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L+L +N S + +T L L +T++ +++ + + +L L L+ N ++
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIED 191
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
+ L S+ L + N
Sbjct: 192 ISP-LASLTSLHYFTAYVNQ 210
Score = 55.6 bits (135), Expect = 9e-09
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L + +N +T L P + L+ L L + N + I + L L + +N +
Sbjct: 224 NSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS--DIN-AVKDLTKLKMLNVGSNQISD 279
Query: 144 LPGFLLSMPQLDTVYRHGN 162
+ ++ QL++++ + N
Sbjct: 280 ISVL-NNLSQLNSLFLNNN 297
Score = 53.7 bits (130), Expect = 4e-08
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 66 LSLSYTPIGRRI---FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L+L + + L++ + + + P I LT+L L L N +++ S
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-- 193
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L +L + N + + + +M +L+++ N
Sbjct: 194 -PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232
Score = 49.1 bits (118), Expect = 1e-06
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
L L +N L + + IG LTNL L L+ N + + L + N ++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR---PLASLSKMDSADFANQVI 345
Score = 36.8 bits (86), Expect = 0.010
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 66 LSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQ 117
L L+ +G I + L L N +T + P + L+ + + ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 59.7 bits (145), Expect = 5e-10
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 16/145 (11%)
Query: 33 STPQTACQRNCSLEVGGICS-----HIWIPQY-FSHAFLLSLSY---TPIGRRIF-KCDT 82
S +++ Q + S + GIC IP L LS T I +C
Sbjct: 18 SKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVN 77
Query: 83 VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNL 140
++ L L SN + ++ D L +L L L+ N L ++ +LT L L N
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNP 135
Query: 141 LDALP--GFLLSMPQLDTVYRHGNH 163
L + +L +
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMD 160
Score = 52.8 bits (127), Expect = 8e-08
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQN------ASIPF-TLTFCKNLTHLY 135
L L L +++ L L D L ++ +L ++
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 136 LDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ + L + L + L + N
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQ 288
Score = 51.7 bits (124), Expect = 2e-07
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 88 LKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP- 145
++ T + LT L L + + LQ+ P +L +N++HL L L
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLE 215
Query: 146 GFLLSMPQLDTVYRHGNH 163
F+ ++ +
Sbjct: 216 IFVDVTSSVECLELRDTD 233
Score = 47.8 bits (114), Expect = 3e-06
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 86 LSLKSNSLTSLPPDI----GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
L + + L + R + +TD L + L L L N L
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--QVMKLLNQISGLLELEFSRNQL 289
Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
++P G + L ++ H N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311
Score = 45.9 bits (109), Expect = 1e-05
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLD 142
+ + SL + + +++ L L + N L+ S+P +L ++L N D
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 45.5 bits (108), Expect = 2e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 71 TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFC 128
T I R+ F +E L + ++ L S P + N+ L L + +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI--LLL-EIFVD 219
Query: 129 K--NLTHLYLDNNLLDALP 145
++ L L + LD
Sbjct: 220 VTSSVECLELRDTDLDTFH 238
Score = 36.3 bits (84), Expect = 0.017
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 59 YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDN 114
F + + S + + + + + L N L S+P I RLT+L+ + L N
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 57.9 bits (140), Expect = 6e-10
Identities = 18/128 (14%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK 371
G + +F ++ + K + + DT K G + F +F+ ++ + + K
Sbjct: 35 GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQK 94
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE------VDQIFREANVTMNSKVR 425
+ FK D +G++ L + + + ++ +F + ++ + ++
Sbjct: 95 -LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELT 153
Query: 426 YEDFVKIA 433
E+F+
Sbjct: 154 LEEFINGM 161
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 54.0 bits (131), Expect = 7e-10
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
A +++ AF+A D G + L+ + G+ L +E+D + REA+V + +V
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60
Query: 426 YEDFVKI 432
YE+F ++
Sbjct: 61 YEEFARM 67
Score = 48.3 bits (116), Expect = 8e-08
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
+ + F F + +G I T+DEL M LG EL + E + G++++ +F
Sbjct: 7 DLQVAFRAFDQDGDGHI-TVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFA 65
Query: 321 KVM 323
+++
Sbjct: 66 RML 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 58.5 bits (142), Expect = 8e-10
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
L L N L SLPP + LT L L L N LQ S+P F LT +L L L N
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ--SLPKGVFDKLT---SLKELRLYN 166
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
N L +P G + +L T+ N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNN 191
Score = 58.1 bits (141), Expect = 1e-09
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
E L + N L +LP + +L NL L L N L+ S+P F LT LT+L L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK--SLPPRVFDSLT---KLTYLSLGY 142
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
N L +LP G + L + + N
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNN 167
Score = 55.0 bits (133), Expect = 1e-08
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
+L L N L +LP I L NL L +TDN LQ ++P F L NL L LD
Sbjct: 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ--ALPIGVFDQLV---NLAELRLDR 118
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
N L +LP S+ +L + N
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYN 143
Score = 54.6 bits (132), Expect = 1e-08
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
LSL N L SLP + +LT+L+ L L +N L+ +P F LT L L LDNN
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK--RVPEGAFDKLT---ELKTLKLDNNQ 192
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L +P G S+ +L + N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
L L +N L +P +LT L+ L L +N L+ +P + L L L N D
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQENPWD 218
Score = 42.7 bits (101), Expect = 1e-04
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT----LTFCKNLTHLY 135
+ V S LT++P +I + + L L N L S+P LT L LY
Sbjct: 16 NNKNSV-DCSSKKLTAIPSNI--PADTKKLDLQSNKLS--SLPSKAFHRLT---KLRLLY 67
Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
L++N L LP G + L+T++ N
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNK 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 9e-10
Identities = 57/348 (16%), Positives = 96/348 (27%), Gaps = 119/348 (34%)
Query: 86 LSLKSNSL-TSLP-PDIGRLTNLRVLC--LTDNCLQNASIPFTLTFCKN--------LTH 133
L+L SL L P T + L + + P T F + L
Sbjct: 9 LTLSHGSLEHVLLVP-----TASFFIASQLQEQFNKILPEP-TEGFAADDEPTTPAELVG 62
Query: 134 LYLDNNLLDALPGFL------LSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTR 187
+L G++ + Q D V F++ ++ +DIHA
Sbjct: 63 KFL---------GYVSSLVEPSKVGQFDQVLNLC-LTEFENCYLE-GNDIHALAAK---- 107
Query: 188 DEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNS 247
L Q + + + +I +N+ AR + NS
Sbjct: 108 ---------LLQENDTTLVKTKELI---KNYIT------------ARIMAKRPFDKKSNS 143
Query: 248 A--EPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKT-LDELSVIMRSLGMS--PTIAE 302
A + ++ +F G +EL R L + + +
Sbjct: 144 ALFRAVGEGNAQLVA-------------IFGGQGNTDDYFEEL----RDLYQTYHVLVGD 186
Query: 303 LKKYLAEKGGKLS---------FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSF 353
L K+ AE +L F L ++ + P + D S +S
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK--------DYLLSIPISC 238
Query: 354 P-----------DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPA 390
P K++ P E+ K A G V A
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFT------PGELRSYLKGATGHSQGLVTA 280
Score = 37.0 bits (85), Expect = 0.014
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 25/120 (20%)
Query: 223 LFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFR-ECFFLFARNGTI 281
F G I Y+ + + +K + FR E L A T
Sbjct: 1675 HFGGEKGKRIRENYSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---TQ 1730
Query: 282 KT-----LDELSV--IMRSLGMSPTIA--------ELKKY--LAEKGGKLSFPDFLKVMH 324
T L E + ++S G+ P A E Y LA +S ++V+
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE---YAALASLADVMSIESLVEVVF 1787
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 53.3 bits (129), Expect = 1e-09
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
+ F F +N G + +LDE + + T ++ K+ E G+L+ +F
Sbjct: 2 SAKRVFEKFDKNKDGKL-SLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
Query: 321 KVM 323
+
Sbjct: 61 SCI 63
Score = 49.0 bits (118), Expect = 4e-08
Identities = 10/61 (16%), Positives = 25/61 (40%)
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
F+ D K G + + V + + + +++ + F E +V N ++ ++F
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Query: 432 I 432
Sbjct: 62 C 62
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 57.0 bits (138), Expect = 1e-09
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYL 136
T+ + L+ N++ +PP LR + L++N + + F L +L L L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLR---SLNSLVL 87
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGNH 163
N + LP + L + + N
Sbjct: 88 YGNKITELPKSLFEGLFSLQLLLLNANK 115
Score = 57.0 bits (138), Expect = 1e-09
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
L L N +T LP + L +L++L L N + + F L NL L L +N
Sbjct: 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKIN--CLRVDAFQDLH---NLNLLSLYDNK 139
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L + G + + T++ N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162
Score = 52.0 bits (125), Expect = 6e-08
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
+ L +N ++ L PD L +L L L N + +P F L +L L L+ N
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLF---SLQLLLLNANK 115
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
++ L + L+ + + N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDN 138
Score = 50.4 bits (121), Expect = 2e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
L L +N + L D L NL +L L DN LQ +I T + + + ++L N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 42.7 bits (101), Expect = 8e-05
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 90 SNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDALP-GF 147
LT +P ++ + + L N ++ IP + K L + L NN + L
Sbjct: 20 GKGLTEIPTNL--PETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 148 LLSMPQLDTVYRHGN 162
+ L+++ +GN
Sbjct: 76 FQGLRSLNSLVLYGN 90
Score = 29.2 bits (66), Expect = 2.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDN 114
+LSL N L ++ L ++ + L N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 57.4 bits (139), Expect = 1e-09
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYL 136
+ L L +N L SLP + LT L L L N L+ S+P F LT L L L
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPSGVFDRLT---KLKELRL 138
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
+ N L ++P G + L T+ N
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 53.9 bits (130), Expect = 2e-08
Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
L L N L SLP + RLT L+ L L N LQ SIP F LT NL L L N
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAFDKLT---NLQTLSLSTNQ 166
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L ++P G + +L T+ GN
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGN 189
Score = 47.4 bits (113), Expect = 3e-06
Identities = 34/86 (39%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 81 DTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLD 137
DT E L L+S L +L LT L L L N LQ A + LT L L L
Sbjct: 36 DT-EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---ELGTLGLA 91
Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
NN L +LP G + QLD +Y GN
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGN 117
Score = 45.8 bits (109), Expect = 8e-06
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
L L +N L S+P +LTNL+ L L+ N LQ S+P L + L N D
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQFD 192
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 57.0 bits (138), Expect = 1e-09
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 83 VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLD 137
V + L SN L ++ + L +L+ L L N + + F L+ ++ L L
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--CVGNDSFIGLS---SVRLLSLY 137
Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
+N + + G ++ L T+ N
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 53.1 bits (128), Expect = 3e-08
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 82 TVEVLSLKSNSLTSLPPDIG--RLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLY 135
L L +N T L +L LR + ++N + I F + + +
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGAS---GVNEIL 87
Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
L +N L+ + + L T+ N
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Score = 52.4 bits (126), Expect = 6e-08
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
++ +N +T + + + + LT N L+ ++ F L +L L L +N
Sbjct: 62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLE--NVQHKMFKGLE---SLKTLMLRSNR 116
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
+ + + + + + + N
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDN 139
Score = 50.0 bits (120), Expect = 3e-07
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
+ L L+SN +T + D L+++R+L L DN + ++ +L+ L L N
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT--TVAPGAFDTLHSLSTLNLLANPF 165
Query: 142 D 142
+
Sbjct: 166 N 166
Score = 43.1 bits (102), Expect = 6e-05
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 90 SNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLLDALP-G 146
+ L +P I L L +N + T F K L + NN + + G
Sbjct: 20 NQKLNKIPEHIP--QYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 147 FLLSMPQLDTVYRHGN 162
++ + N
Sbjct: 76 AFEGASGVNEILLTSN 91
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 56.3 bits (136), Expect = 2e-09
Identities = 23/147 (15%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 299 TIAELKKYLAE-----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSF 353
+ E ++ + G+L+ +F + + + K V F+ D K G + F
Sbjct: 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDF 71
Query: 354 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN------WGEGLSSK 407
+++ + K + K + FK D +G + L +++ E ++++
Sbjct: 72 MEYVAALSLVLKGKVDQK-LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAE 130
Query: 408 E-VDQIFREANVTMNSKVRYEDFVKIA 433
E + +F + ++ + ++ E+F++
Sbjct: 131 EFTNMVFDKIDINGDGELSLEEFMEGV 157
Score = 45.5 bits (108), Expect = 9e-06
Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 48/144 (33%)
Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFPDFLK 321
++ + F +G + TL E +SP+ + + + K G + F +++
Sbjct: 18 QWYKKFMTECPSGQL-TLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVA 76
Query: 322 VMHTHSKA-----------------------------------------EDIPKEVVDA- 339
+ K +E +
Sbjct: 77 ALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMV 136
Query: 340 FKAADTTKSGKLSFPDFLKVMHTH 363
F D G+LS +F++ +
Sbjct: 137 FDKIDINGDGELSLEEFMEGVQKD 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 2e-09
Identities = 78/516 (15%), Positives = 140/516 (27%), Gaps = 176/516 (34%)
Query: 3 DPAKNNEGFQATRNKQGVGFSRRSSFKNKNST-PQTACQ-RNCSLEV-----------GG 49
P+ + R++ ++ F N + Q + R LE+ G
Sbjct: 104 QPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 50 I---------CSHIWIPQYFS-HAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSL-TSLPP 98
C + F L+L C++ E + L + P
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLK---------NCNSPETVLEMLQKLLYQIDP 211
Query: 99 DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKN-LTHLYLDNNLLDALPGFLLSMPQLDTV 157
+ T +++I + + L L + L L+ L V
Sbjct: 212 N-----------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LV----LLNV 253
Query: 158 YRHGNHNYFKSTFMWYHSDIHARIRSTSTRD----EVLRKQKKLHQPS------------ 201
N F ++ +I T TR + L H
Sbjct: 254 QNAKAWNAF---------NLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 202 ----------RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPL 251
R QDL + N + + D +A ++ + H + + L
Sbjct: 304 KSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLAT-WDNWK--HV--NCDKL 355
Query: 252 DR---SGYKVFTFKTPYLEFRECF---FLFARNGTI--KTL---------DELSVIMRSL 294
S V P E+R+ F +F + I L ++ V++ L
Sbjct: 356 TTIIESSLNVLE---PA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 295 GMSPTIAELKKYLAEKGGK---LSFPDFLKVMHTHSKAEDIP---KEVVDAFKAADTTKS 348
K L EK K +S P + K E+ + +VD + T S
Sbjct: 412 --------HKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 349 GKLSFP--D---FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
L P D + + H H K + E + F +L +
Sbjct: 462 DDLIPPYLDQYFYSHIGH-HLKNIE-HPERMTLF-----------RMVFLD---FRF--- 502
Query: 404 LSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPD 439
+ K+R++ A + +
Sbjct: 503 ----------------LEQKIRHDSTAWNASGSILN 522
Score = 54.9 bits (131), Expect = 4e-08
Identities = 58/326 (17%), Positives = 105/326 (32%), Gaps = 106/326 (32%)
Query: 62 HAFLLSLSYTPIGRRI------------FKCDTVEVLSLKSNSLTSLPPDIGR--LTNLR 107
+ LS+ I I CD + ++ +SL L P R L
Sbjct: 326 NPRRLSI----IAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLS 379
Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDN------NLLDALPGFLLSMPQLDTVYRHG 161
V +A IP L L+ ++ D +++ L + L V +
Sbjct: 380 VF------PPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQP 421
Query: 162 NHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIAS---KENF 218
+ I+ ++ L + LH+ S++ + F
Sbjct: 422 KESTIS-----IP-SIYLELKVK------LENEYALHR----------SIVDHYNIPKTF 459
Query: 219 FEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARN 278
L P L Y Y+ H+ H+ + E + ++ F+ +L+FR FL
Sbjct: 460 DSDDLIPPYLDQYF---YS--HIGHHLKNIEHPE----RMTLFRMVFLDFR---FLEQ-- 505
Query: 279 GTIKTLDELSVIMRSLGMSPTIAELKKY---LAEKGGKL-----SFPDFLKVMHTH---S 327
K + + S + T+ +LK Y + + K + DFL + + S
Sbjct: 506 ---KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 328 KAEDI-------PKEVV--DAFKAAD 344
K D+ E + +A K
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 37.1 bits (85), Expect = 0.013
Identities = 52/447 (11%), Positives = 123/447 (27%), Gaps = 144/447 (32%)
Query: 56 IPQYFSHAFLLSLSYTPIGRRIFKCDTVE-----VLSLKS-NSLTSLPPDIGRLTNLRVL 109
I F AF+ F C V+ +LS + + + + LR+
Sbjct: 21 ILSVFEDAFV----------DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT--LRLF 68
Query: 110 -CLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKS 168
L + + F + + L N FL+S + + +
Sbjct: 69 WTL---LSKQEEM--VQKFVEEV----LRINY-----KFLMSPIKTEQRQPSMMTRMYIE 114
Query: 169 TFMWYHSDIHARIRSTSTRDEVLRK-QKKLHQPSRLQDLAVQ-------SVIASK----- 215
++D + +R + K ++ L + +++ + + +A
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 216 --ENFFEPGLF---------PGPLV------------DYIAREYNQYHVCHYCNSAEP-- 250
+ + +F P ++ ++ +R + ++ +S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 251 ---------------LD----RSGYKVFTFKTPYLEFRECFFLF-ARNGTI------KTL 284
L + F C L R + T
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------CKILLTTRFKQVTDFLSAATT 286
Query: 285 DELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD------ 338
+S+ S+ ++P E+K L K + + +D+P+EV+
Sbjct: 287 THISLDHHSMTLTP--DEVKSLLL------------KYLDC--RPQDLPREVLTTNPRRL 330
Query: 339 ----AFKAADTTKSGKLSFPDFLKVMHTHSKAEDI--PKEVVDAFKA----ADTTKSGTV 388
+ K+ + ++ P E F + +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---I 387
Query: 389 PAKYLKHVLVNWGEGLSSKEVDQIFRE 415
P L ++ W + + +V + +
Sbjct: 388 PTILLS-LI--WFD-VIKSDVMVVVNK 410
Score = 33.3 bits (75), Expect = 0.21
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 30/100 (30%)
Query: 355 DF-LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 413
DF K DI DAF K V K +L S +E+D I
Sbjct: 8 DFETGEHQYQYK--DILSVFEDAFVDNFDCKD--VQ-DMPKSIL-------SKEEIDHII 55
Query: 414 REANVTMNSKVR-------------YEDFVKIACAPVPDY 440
+ S + FV+ +Y
Sbjct: 56 MSKDAV--SGTLRLFWTLLSKQEEMVQKFVEEVLR--INY 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 58.1 bits (141), Expect = 2e-09
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 66 LSLSYTPIGRRIFKCD--TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L T + + + D V L + S+ + L NL + ++N L + I
Sbjct: 29 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD--ITP 85
Query: 124 TLTFCKNLTHLYLDNNLLDALPGF 147
L L + ++NN + +
Sbjct: 86 -LKNLTKLVDILMNNNQIADITPL 108
Score = 58.1 bits (141), Expect = 3e-09
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 66 LSLSYTPIGRR--IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
+ ++ I + + L+L +N +T + P + LTNL L L+ N + + S
Sbjct: 95 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS--- 150
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
L+ +L L N + D P L ++ L+ + N
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN 187
Score = 57.3 bits (139), Expect = 4e-09
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L L I + + L L N L + P I L NL L L N + + S
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS--- 325
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
++ L L+ NN + + L ++ ++ + N
Sbjct: 326 PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQ 364
Score = 57.3 bits (139), Expect = 5e-09
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L +S + + K +E L +N ++ + P +G LTNL L L N L++ I
Sbjct: 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG- 237
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
TL NLT L L NN + L L + +L + N
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 276
Score = 55.7 bits (135), Expect = 1e-08
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ T+E L + SN ++ + + +LTNL L T+N + I L NL L L
Sbjct: 173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQIS--DITP-LGILTNLDELSL 228
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ N L + S+ L + N
Sbjct: 229 NGNQLKDIGTL-ASLTNLTDLDLANNQ 254
Score = 55.4 bits (134), Expect = 2e-08
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + L L +N +++L P + LT L L L N + +I L LT+L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS--NISP-LAGLTALTNLEL 294
Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ N L+ + + ++ L + + N+
Sbjct: 295 NENQLEDISP-ISNLKNLTYLTLYFNN 320
Score = 55.0 bits (133), Expect = 2e-08
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
L+L N+++ + P + LT L+ L +N + + S +L N+ L +N +
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISD 367
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
L L ++ ++ + +
Sbjct: 368 LTP-LANLTRITQLGLNDQA 386
Score = 51.1 bits (123), Expect = 4e-07
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
L ++T L + L ++ SI + + NLT + NN L
Sbjct: 26 KMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIK--SIDG-VEYLNNLTQINFSNNQLT 81
Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
+ L ++ +L + + N
Sbjct: 82 DITP-LKNLTKLVDILMNNNQ 101
Score = 48.0 bits (115), Expect = 4e-06
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 66 LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LS + I + + L L + T+ P + N+ + N P
Sbjct: 358 LSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIAPA 415
Query: 124 TLTFCKNLTHLYLDNNLLDALP 145
T++ + T + NL
Sbjct: 416 TISDGGSYTEPDITWNLPSYTN 437
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 56.9 bits (138), Expect = 3e-09
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYL 136
+ + L L N L L L+VL L+ +Q +I + L+ +L+ L L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLS---HLSTLIL 83
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGNH 163
N + +L G + L + +
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETN 111
Score = 55.4 bits (134), Expect = 8e-09
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 66 LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L L+ + F +++ L +L SL G L L+ L + N +Q S
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--S 138
Query: 121 IPFTLTFCK--NLTHLYLDNNLLDALP-GFLLSMPQLDTVYRH 160
F NL HL L +N + ++ L + Q+ +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Score = 51.1 bits (123), Expect = 2e-07
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRV----LCLTDNCLQNASIPFTLTFCK-NLTHLYLD 137
E L L SN + S+ L + + L L+ N + I F + L L LD
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQ-PGAFKEIRLKELALD 208
Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
N L ++P G + L ++ H N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 45.0 bits (107), Expect = 2e-05
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
L L N + + P + L+ L L N L+ S+P +L ++L N D
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNPWD 237
Score = 37.6 bits (88), Expect = 0.005
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 66 LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDN 114
L LS I FK ++ L+L +N L S+P I RLT+L+ + L N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 57.8 bits (140), Expect = 3e-09
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 4/134 (2%)
Query: 299 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
EL + E + + S ED ++ D SG + + +F+
Sbjct: 349 DRDELVRGYHEFMRLKGVDSNSLIQNEGSTIED---QIDSLMPLLDMDGSGSIEYSEFIA 405
Query: 359 VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 418
+ + + AFK D SG + K L + + +E++ I + +
Sbjct: 406 SAIDRTILLSRER-MERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDN 464
Query: 419 TMNSKVRYEDFVKI 432
+ +V + +FV++
Sbjct: 465 NKDGEVDFNEFVEM 478
Score = 33.9 bits (78), Expect = 0.10
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE 367
GK+S + K+ + +E+ + D K G++ F +F++++ + E
Sbjct: 432 GKISTKELFKLFSQADSSIQ-MEELESIIEQVDNNKDGEVDFNEFVEMLQNFVRNE 486
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 55.2 bits (133), Expect = 4e-09
Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 24/157 (15%)
Query: 299 TIAELKKYLAE-----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSF 353
A+L+++ + G L +F + E+ + V F+A DT + F
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDN-EEATQYVEAMFRAFDTNGDNTIDF 78
Query: 354 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-------------- 399
+++ ++ + + ++ FK D ++G + + L ++ +
Sbjct: 79 LEYVAALNLVLRG-TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEA 137
Query: 400 --WGEGLSSKE-VDQIFREANVTMNSKVRYEDFVKIA 433
G+ L+ +E VD+IF + + ++ +FV+ A
Sbjct: 138 EQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174
Score = 35.6 bits (82), Expect = 0.018
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 19/97 (19%)
Query: 269 RECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHS 327
+ F ++ ++ EL I+ S+ KL ++V
Sbjct: 98 KWTFKIYDKDRNGCIDRQELLDIVESIY-----------------KLKKACSVEVEAEQQ 140
Query: 328 KAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVMHTH 363
P+EVVD F D G+LS +F++
Sbjct: 141 GKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRD 177
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 57.1 bits (138), Expect = 4e-09
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 66 LSLSYTPIGR---RIFK-CDTVEVLSLKS-NSLTSLPPDI-GRLTNLRVLCLTDNCLQNA 119
L L PI F ++ L L L+ + L+NLR L L L+
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198
Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
IP LT L L L N L A+ G + L ++ +
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Score = 55.9 bits (135), Expect = 1e-08
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTD-NCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+ L L++N + S+P R+ +LR L L + L S NL +L L L
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNL 197
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
+P + +LD + GNH
Sbjct: 198 REIPNL-TPLIKLDELDLSGNH 218
Score = 55.9 bits (135), Expect = 1e-08
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
+ L L N L+++ P L +L+ L + + +Q I ++L + L +N L
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAFDNLQSLVEINLAHNNL 267
Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
LP + L+ ++ H N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289
Score = 49.4 bits (118), Expect = 1e-06
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
E+L L N + ++ L NL L L DN L +IP + L L+L NN +
Sbjct: 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT--TIPNGAFVYLSKLKELWLRNNPI 148
Query: 142 DALPGFLLS-MPQL 154
+++P + + +P L
Sbjct: 149 ESIPSYAFNRIPSL 162
Score = 44.4 bits (105), Expect = 5e-05
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 66 LSLSYTPI---GRRIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
L LS + F+ ++ L + + + + + L +L + L N L
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT--L 269
Query: 121 IPF-TLTFCKNLTHLYLDNNLLD 142
+P T +L ++L +N +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292
Score = 43.6 bits (103), Expect = 8e-05
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 78 FKCD-TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
C + +L +P I TN R+L L +N +Q + ++L L L
Sbjct: 39 CSCSNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIK-VNSFKHLRHLEILQL 95
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGNH 163
N + + G + L+T+ N
Sbjct: 96 SRNHIRTIEIGAFNGLANLNTLELFDNR 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 55.5 bits (134), Expect = 4e-09
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDN 138
L+L +N L SLP + +LT L+ L L N LQ S+P F LT L L L
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFDKLT---QLKDLRLYQ 133
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
N L ++P G + L ++ H N
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 54.3 bits (131), Expect = 1e-08
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
L L N L SLP + +LT+L L L+ N LQ S+P F LT L L L+ N
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ--SLPNGVFDKLT---QLKELALNTNQ 111
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L +LP G + QL + + N
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQN 134
Score = 36.6 bits (85), Expect = 0.008
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
C V S TS+P I L L N L++ +LT LYL N
Sbjct: 7 CSGTTV-ECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGN 62
Query: 140 LLDALP-GFLLSMPQLDTVYRHGN 162
L +LP G + L + N
Sbjct: 63 KLQSLPNGVFNKLTSLTYLNLSTN 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 56.6 bits (137), Expect = 5e-09
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L L+ T I + ++VL L N +T++ P + LTNL+ L + + + + +
Sbjct: 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--- 167
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L LT L D+N + + L S+P L V+ N
Sbjct: 168 PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ 206
Score = 55.5 bits (134), Expect = 1e-08
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 66 LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L L I + ++ LS+ + ++ L P + L+ L L DN + I
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS--DISP 190
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
L NL ++L NN + + L + L V
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ 227
Score = 50.8 bits (122), Expect = 3e-07
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 66 LSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L LS P+ + + +++ L L S +T + P + L+NL+VL L N + N S
Sbjct: 90 LELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-- 145
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L NL +L + N + L L ++ +L T+ N
Sbjct: 146 -PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184
Score = 50.5 bits (121), Expect = 4e-07
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGRRIF--KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
++ + + + D + LS +T++ + L NL L L DN + + +
Sbjct: 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA--- 79
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L +T L L N L + + + + T+
Sbjct: 80 PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQ 118
Score = 50.1 bits (120), Expect = 6e-07
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
++ +++T L + L + + + NL L L +N +
Sbjct: 21 AIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQIT 76
Query: 143 ALPGFLLSMPQLDTVYRHGN 162
L L ++ ++ + GN
Sbjct: 77 DLAP-LKNLTKITELELSGN 95
Score = 49.3 bits (118), Expect = 1e-06
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LS T + + + + L LK N +T L P + LT + L L+ N L+N S
Sbjct: 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--- 101
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
+ +++ L L + + + L + L +Y N
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN 139
Score = 47.4 bits (113), Expect = 5e-06
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 66 LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LS+ + + + L N ++ + P + L NL + L +N + + S
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-- 212
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLS 150
L NL + L N + P F +
Sbjct: 213 -LANTSNLFIVTLTNQTITNQPVFYNN 238
Score = 41.2 bits (97), Expect = 4e-04
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 88 LKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF 147
+ ++ + PD L N + + + + T +T L + + G
Sbjct: 4 TQPTAINVIFPDPA-LANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEG- 58
Query: 148 LLSMPQLDTVYRHGNH 163
+ + L + N
Sbjct: 59 VQYLNNLIGLELKDNQ 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 56.2 bits (136), Expect = 5e-09
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
L L + + ++ LSL+ N ++ + + L L L L +N + + +
Sbjct: 95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT--- 150
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L+ L L L++N + + L + +L +Y NH
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189
Score = 52.4 bits (126), Expect = 9e-08
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 66 LSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L L+ + I + L L N + L + L L+ L L N + + +
Sbjct: 73 LFLNGNKL-TDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-- 128
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
L L LYL NN + + L + +LDT+ N
Sbjct: 129 -GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDN 166
Score = 52.0 bits (125), Expect = 1e-07
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LSL + I + +E L L +N +T + + RLT L L L DN + +
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV--- 172
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
L L +LYL N + L L + LD +
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210
Score = 47.7 bits (114), Expect = 3e-06
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+LK S+T L ++ + ++ ++ S+ + + N+T L+L+ N L
Sbjct: 26 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK--SVQG-IQYLPNVTKLFLNGNKLT 81
Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
+ L ++ L ++ N
Sbjct: 82 DIKP-LANLKNLGWLFLDENK 101
Score = 42.3 bits (100), Expect = 1e-04
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
+ + D L + +A T ++ + +N+ + ++
Sbjct: 7 TITVPTPIKQIFSD-DAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQ 62
Query: 146 GFLLSMPQLDTVYRHGNH 163
G + +P + ++ +GN
Sbjct: 63 G-IQYLPNVTKLFLNGNK 79
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 53.8 bits (130), Expect = 8e-09
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
T +VL L N +T L P + RLT L L L +N L +P F LT LT L L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPAGVFDKLT---QLTQLSL 85
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
++N L ++P G ++ L ++ N
Sbjct: 86 NDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 43.0 bits (102), Expect = 4e-05
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLY 135
C V SL S+P I T +VL L DN + + F LT LT L
Sbjct: 9 CSGTTV-DCSGKSLASVPTGI--PTTTQVLYLYDNQIT--KLEPGVFDRLT---QLTRLD 60
Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGN 162
LDNN L LP G + QL + + N
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 54.1 bits (130), Expect = 9e-09
Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 16/164 (9%)
Query: 285 DELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
+ + ++ S + I E K +L + G LS +F K+ D K F+
Sbjct: 11 EVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFR 70
Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
D G + F +F+ + S+ + K + AF D +G + + ++
Sbjct: 71 TFDANGDGTIDFREFIIALSVTSRGKLEQK-LKWAFSMYDLDGNGYISKAEMLEIVQAIY 129
Query: 402 EGLSS------------KEVDQIFREANVTMNSKVRYEDFVKIA 433
+ +SS K ++IFR+ + + K+ E+F++ A
Sbjct: 130 KMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 173
Score = 37.9 bits (88), Expect = 0.003
Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 53/149 (35%)
Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFPDFLK 321
E+ + F +G + +++E I + ++ +++ A G + F +F+
Sbjct: 29 EWYKGFLRDCPSGHL-SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFII 87
Query: 322 VMHTHSKA----------------------------------------------EDIPKE 335
+ S+ E P++
Sbjct: 88 ALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEK 147
Query: 336 VVDA-FKAADTTKSGKLSFPDFLKVMHTH 363
+ F+ DT + GKLS +F++ +
Sbjct: 148 RTEKIFRQMDTNRDGKLSLEEFIRGAKSD 176
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 53.9 bits (130), Expect = 9e-09
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
D + + N + L L L+ L + +N + +LT L L NN
Sbjct: 41 LDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNN 98
Query: 140 LLDALPG--FLLSMPQLDTVYRHGN 162
L L L S+ L + N
Sbjct: 99 SLVELGDLDPLASLKSLTYLCILRN 123
Score = 36.6 bits (85), Expect = 0.006
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 111 LTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
LT ++ A+ T L L + + ++ Q D + N
Sbjct: 4 LTAELIEQAA---QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE 53
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 53.4 bits (129), Expect = 1e-08
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
LSL N + SLP + +LT L +L L +N LQ S+P F LT L L LD N
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ--SLPNGVFDKLT---QLKELALDTNQ 111
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L ++P G + L ++ H N
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTN 134
Score = 53.0 bits (128), Expect = 2e-08
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
+ L L+SN L SLP + +LT L L L+ N +Q S+P F LT LT LYL
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLT---KLTILYL 83
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
N L +LP G + QL + N
Sbjct: 84 HENKLQSLPNGVFDKLTQLKELALDTN 110
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 55.9 bits (135), Expect = 1e-08
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
E L + N + P L++L+ L + ++ + I +L L L +N L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--LIERNAFDGLASLVELNLAHNNL 278
Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
+LP + L ++ H N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHN 300
Score = 55.1 bits (133), Expect = 2e-08
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 66 LSLSYTPIGR---RIFK-CDTVEVLSL-KSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNA 119
L L PI F ++ L L + L + L NL+ L L ++
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-- 209
Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
+P LT L L + N + + L ++ +
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Score = 54.0 bits (130), Expect = 4e-08
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
L+L N++ + D L +L VL L N ++ +L L L +N
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW 134
Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
L +P G + +L ++ N
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNP 158
Score = 53.2 bits (128), Expect = 9e-08
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
L L++N + S+P R+ +L L L + I NL +L L +
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDL-GELKKLEYISEGAFEGLFNLKYLNLGMCNI 208
Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
+P + L+ + GNH
Sbjct: 209 KDMPNL-TPLVGLEELEMSGNH 229
Score = 51.7 bits (124), Expect = 2e-07
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 56 IPQY-FSHAFLLSLSY---TPIGRRIFKC-DTVEVLSLKSNSLTSLPPDI-GRLTNLRVL 109
+PQ S+ L+L I F+ +EVL L NS+ + L +L L
Sbjct: 69 VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 110 CLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALPGFLLS-MPQL 154
L DN L IP + L L+L NN ++++P + + +P L
Sbjct: 129 ELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 56.4 bits (136), Expect = 1e-08
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 59 YFSHAFLLSLSYTPIGRRIFKC-DTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCL 116
+ L T + +F+ ++VL L N L SLPP + LT LR L L N L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 117 QNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ NL L + N L A L + N
Sbjct: 517 T--VLSHN-DLPANLEILDISRNQLLAPNPD--VFVSLSVLDITHNK 558
Score = 52.9 bits (127), Expect = 1e-07
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 82 TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
T E L L N + ++ L L++L L NL L L ++
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
+ L + L + +
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCG 108
Score = 51.3 bits (123), Expect = 4e-07
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPF 123
+ LS + T ++ L N L +L + R+ +L++L L N + S
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 124 TLTFCKNLTHLYLDNNLLDAL------PGFLLSMPQLDTVYRHGNH 163
T + +L L+L N+L + L +Y + N+
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491
Score = 51.3 bits (123), Expect = 4e-07
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASI--- 121
L I + + +++L L N +S D +L L L +N LQ A
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 122 -PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
+L LYL++N L++LP G + L + + N
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Score = 51.0 bits (122), Expect = 6e-07
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+V L L + SL + L +L+VL L N + + NL L L NL
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL 325
Query: 141 LDALPGFLLS-MPQLDTVYRHGNH 163
L L +P++ + NH
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNH 349
Score = 50.2 bits (120), Expect = 1e-06
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 66 LSLSYTPIG---RRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L+L+Y I F D ++VL+L N L L L + + L N +
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
T F + L L L +N L + +P + ++ GN
Sbjct: 355 -DQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK 392
Score = 49.4 bits (118), Expect = 2e-06
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 10/108 (9%)
Query: 66 LSLSYTPIGR---RIFK-CDTVEVLSLKSNSLTS--LPPDI-GRLTNLRVLCLTDNCLQN 118
L L + I F+ + L L L+ L L L L L+ N +++
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDALPGFL---LSMPQLDTVYRHGNH 163
+ + +L + +N + + L L N
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Score = 49.4 bits (118), Expect = 2e-06
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSL-----TSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
S + + ++E L L N L T L D+ L++L+VL L N L +
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
P + L L L++N L L L L+ + N
Sbjct: 497 -PGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQ 537
Score = 46.7 bits (111), Expect = 1e-05
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
L L + I ++ + L N L +LP + L++N L+N I + L
Sbjct: 367 LDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH---LSENRLENLDILYFL 422
Query: 126 TFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
+L L L+ N + P L+ ++ N
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Score = 28.2 bits (63), Expect = 6.5
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 18/82 (21%)
Query: 82 TVEVLSLKSNSLTSLPP-------DIGRLTNLRVLCLTDNCLQ-----------NASIPF 123
T+ SL +NSL S + R L +L ++ N + S F
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 124 TLTFCKNLTHLYLDNNLLDALP 145
+L ++ + +
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPD 256
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 53.4 bits (129), Expect = 1e-08
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
+ L L +N +T L P + L NL+ L N L +IP F LT LT L L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--AIPTGVFDKLT---QLTQLDL 88
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
++N L ++P G ++ L +Y + N
Sbjct: 89 NDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 41.9 bits (99), Expect = 1e-04
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLY 135
CD V + ++ L S+P I T+ + L L +N + + F L NL LY
Sbjct: 12 CDQTLV-NCQNIRLASVPAGI--PTDKQRLWLNNNQIT--KLEPGVFDHLV---NLQQLY 63
Query: 136 LDNNLLDALP 145
++N L A+P
Sbjct: 64 FNSNKLTAIP 73
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 52.8 bits (127), Expect = 1e-08
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
+ + +E LS + LTS+ ++ +L L+ L L+DN + C NLTHL L
Sbjct: 40 EFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLTHLNLSG 97
Query: 139 NLLDALPG--FLLSMPQLDTVYRHGN 162
N + L L + L ++
Sbjct: 98 NKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 50.8 bits (122), Expect = 6e-08
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIP 122
LS + + K + ++ L L N ++ + NL L L+ N +++ S
Sbjct: 47 LSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGF----LLSMPQL 154
L +NL L L N + L + +PQL
Sbjct: 107 EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142
Score = 42.7 bits (101), Expect = 4e-05
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDA 143
VL ++ L L L + L + + L L L L DN +
Sbjct: 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGG 79
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
L P L + GN
Sbjct: 80 LEVLAEKCPNLTHLNLSGNK 99
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 102 RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHG 161
++++ L L ++ + + L L N L ++ L + +L +
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSD 73
Query: 162 NH 163
N
Sbjct: 74 NR 75
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
L L SN L +LP + LT L VL L N L +P F L +L L++ N
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT--VLPSAVFDRLV---HLKELFMCCNK 123
Query: 141 LDALPGFLLSMPQLDTVYRHGN 162
L LP + + L + N
Sbjct: 124 LTELPRGIERLTHLTHLALDQN 145
Score = 53.9 bits (130), Expect = 2e-08
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
VL L +N LT LP + RL +L+ L + N L +P + +LTHL LD N L
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK 148
Query: 143 ALP-GFLLSMPQLDTVYRHGN 162
++P G + L Y GN
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169
Score = 51.6 bits (124), Expect = 1e-07
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDN 138
++L L N +T L P + L NL+ L L N L + +LT LT L L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT---QLTVLDLGT 97
Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
N L LP + L ++ N
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCN 122
Score = 37.0 bits (86), Expect = 0.006
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 90 SNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFL 148
S S+P I TN ++L L DN + P NL LYL +N L ALP G
Sbjct: 28 SKRHASVPAGI--PTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVF 84
Query: 149 LSMPQLDTVYRHGN 162
S+ QL + N
Sbjct: 85 DSLTQLTVLDLGTN 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.5 bits (134), Expect = 1e-08
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
+L L N + +L D +L L L +N + P NL L L +N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR 91
Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
L +P G + L + N
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENK 115
Score = 55.5 bits (134), Expect = 2e-08
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
VL L+ ++ ++ RL L+VL ++ + ++ + NLT L + + L
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLT 237
Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
A+P + + L + N
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNP 259
Score = 55.1 bits (133), Expect = 2e-08
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 37 TACQRNCS-----LEVGGICSH---IWIPQY-FSHAFLLSLSY---TPIGRRIFKCDT-V 83
T C C V +C + +P+ + LL L + + F +
Sbjct: 1 TGCPPRCECSAQDRAV--LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
E L L N ++++ P L NLR L L N L+ IP T NLT L + N +
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKI 116
Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
L ++ + L ++ N
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDND 139
Score = 55.1 bits (133), Expect = 2e-08
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L L I +F + L + N + L + L NL+ L + DN L
Sbjct: 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--Y 142
Query: 121 IPFTLTFC--KNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
I F +L L L+ L ++P L + L + +
Sbjct: 143 IS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Score = 52.4 bits (126), Expect = 1e-07
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
L+L N ++++ + L L+ + L L + L L + N L
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA--VVEPYAFRGLNYLRVLNVSGNQL 308
Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
L S+ L+T+ N
Sbjct: 309 TTLEESVFHSVGNLETLILDSN 330
Score = 52.0 bits (125), Expect = 2e-07
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L +S + +F+ ++ L + N L + L +L L L L S
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT--S 166
Query: 121 IPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
IP L+ L L L + ++A+ + +L +
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Score = 49.3 bits (118), Expect = 2e-06
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 66 LSLSYTPI---GRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
L+LSY PI + ++ + L L + P L LRVL ++ N L +
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT--T 310
Query: 121 IPF-TLTFCKNLTHLYLDNNLL 141
+ NL L LD+N L
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332
Score = 47.4 bits (113), Expect = 6e-06
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 66 LSLSY---TPIGRRIFK-CDTVEVLSLKS-NSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
L L + I FK ++VL + L ++ P+ NL L +T L +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT--A 238
Query: 121 IP-FTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
+P + L L L N + + G +L + +L + G
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Score = 37.4 bits (87), Expect = 0.008
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 83 VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQ 117
+ VL++ N LT+L + + NL L L N L
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 54.6 bits (132), Expect = 2e-08
Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
L L N L SLP + +LTNL L L N LQ S+P F LT NLT L L N
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLT---NLTELDLSYNQ 168
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L +LP G + QL + + N
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQN 191
Score = 53.9 bits (130), Expect = 3e-08
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
+ L+L N L SLP + +LTNL L L+ N LQ S+P F LT L L L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFDKLT---QLKDLRL 188
Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
N L ++P G + L ++ H N
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 51.9 bits (125), Expect = 1e-07
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 84 EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDNNL 140
L L N L SLP + +LTNL+ L L +N LQ+ + LT NLT+L L +N
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---NLTYLNLAHNQ 144
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
L +LP G + L + N
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYN 167
Score = 47.3 bits (113), Expect = 3e-06
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
+T +LK S+T L ++ + ++ +++ L N+ +L L N
Sbjct: 19 AET-IKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQGIQYLP---NVRYLALGGN 73
Query: 140 LLDALPGFLLSMPQLDTVYRHGN 162
L + + L + GN
Sbjct: 74 KLHDISAL-KELTNLTYLILTGN 95
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
+++ + ++ + S+ I L N+R L L N L + S LT NLT+L L N L
Sbjct: 42 SIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELT---NLTYLILTGNQL 97
Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
+LP G + L + N
Sbjct: 98 QSLPNGVFDKLTNLKELVLVEN 119
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.3 bits (121), Expect = 2e-08
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 40/113 (35%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
+ F F N G I +L EL+ +R+LG + E+++ +AE
Sbjct: 4 DMERIFKRFDTNGDGKI-SLSELTDALRTLGS-TSADEVQRMMAE--------------- 46
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF 377
DT G + F +F+ + + K+V F
Sbjct: 47 ------------------IDTDGDGFIDFNEFISFC---NANPGLMKDVAKVF 78
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
++ FK DT G + L L G S+ EV ++ E + + + + +F+
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFIS 62
Query: 432 I 432
Sbjct: 63 F 63
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 53.7 bits (129), Expect = 2e-08
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
++ F L + KA + + F + LSF DFL ++ S
Sbjct: 72 LRAQVPFEQILSL--PELKANPFKERICRVFSTSP--AKDSLSFEDFLDLLSVFSDTATP 127
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKE----VDQIFREANVTM 420
+ AF+ D GT+ + L ++ LS+ E +D I E+++
Sbjct: 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187
Query: 421 NSKVRYEDFVKIA 433
+ + +F +
Sbjct: 188 DGTINLSEFQHVI 200
Score = 48.3 bits (115), Expect = 1e-06
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 277 RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG--GKLSFPDFLKVMHTHSKAEDIPK 334
+ + E + + L +P + + + LSF DFL ++ S
Sbjct: 70 SSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDI 129
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMH-------THSKAEDIPKEVVD-AFKAADTTKSG 386
+ AF+ D G L+ D ++++ + K+++D + +D + G
Sbjct: 130 KSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDG 189
Query: 387 TV 388
T+
Sbjct: 190 TI 191
Score = 41.4 bits (97), Expect = 2e-04
Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 39/192 (20%)
Query: 186 TRDEV--LRKQ-KKLHQPSRLQDLAVQSVIASKENFFE-PGLFPGPLVDYIAREYNQYHV 241
T+ E+ ++ +L + + E P L P + I R ++
Sbjct: 46 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPA 105
Query: 242 CHYCNSAEPLDRSGYKVFTFKTPYLE-FRECFFLF--ARNGTIKTLDELSVIMRSLGMSP 298
+ + LD VF+ F +F +GT+ ++LS ++ L
Sbjct: 106 KDSLSFEDFLD--LLSVFSDTATPDIKSHYAFRIFDFDDDGTL-NREDLSRLVNCLTGEG 162
Query: 299 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDFL 357
L K+++D + +D + G ++ +F
Sbjct: 163 EDTRLS-------------------------ASEMKQLIDNILEESDIDRDGTINLSEFQ 197
Query: 358 KVMHTHSKAEDI 369
V+ S++ D
Sbjct: 198 HVI---SRSPDF 206
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 52.3 bits (126), Expect = 4e-08
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
L LK N LT + P+ ++++ L L +N ++ I F L L L L +N
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIK--EISNKMFLGLH---QLKTLNLYDNQ 113
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
+ + G + L ++ N
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASN 136
Score = 50.8 bits (122), Expect = 1e-07
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 82 TVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLY 135
L L N L + D GRL +L L L N L I F + ++ L
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGAS---HIQELQ 84
Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGN 162
L N + + L + QL T+ + N
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDN 112
Score = 49.2 bits (118), Expect = 4e-07
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
L L N + + + L L+ L L DN + + F L +LT L L +N
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS--CVMPGSFEHL---NSLTSLNLASNP 137
Query: 141 LD 142
+
Sbjct: 138 FN 139
Score = 37.7 bits (88), Expect = 0.003
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 90 SNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLLDALP-G 146
L +P DI + L L DN L I F + +L L L N L +
Sbjct: 17 GRGLKEIPRDI--PLHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 147 FLLSMPQLDTVYRHGN 162
+ + N
Sbjct: 73 AFEGASHIQELQLGEN 88
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 51.7 bits (124), Expect = 6e-08
Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 10/134 (7%)
Query: 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE 367
G + +F + + + F D ++G + F +F++ + +
Sbjct: 50 IIDDGLIHKEEFQLALFRNRNRRN--LFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSA 107
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVL--------VNWGEGLSSKEVDQIFREANVT 419
+ ++V AFK D ++G + + LK ++ + E + VD+ F +A+
Sbjct: 108 PVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRK 167
Query: 420 MNSKVRYEDFVKIA 433
+ K+ +++
Sbjct: 168 NDGKIDIDEWKDFV 181
Score = 35.1 bits (81), Expect = 0.023
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 34/119 (28%)
Query: 255 GYKVFTFKTPYLE-FRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG 311
VF P E + F L+ + G I +EL ++ +L +
Sbjct: 99 SLGVFHPSAPVHEKVKFAFKLYDLRQTGFI-EREELKEMVVALLHESELVL--------- 148
Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
+ED+ + +VD F AD GK+ ++ + S +
Sbjct: 149 -----------------SEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFV---SLNPSL 187
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 51.1 bits (123), Expect = 8e-08
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
+ L +N +++L +T L L L+ N L+ IP F L +L L L N
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--CIPPRTFDGLK---SLRLLSLHGND 113
Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
+ +P G + L + N
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGAN 136
Score = 51.1 bits (123), Expect = 9e-08
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLD 137
V L L N T +P ++ +L ++ L++N + ++ F +T L L L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS--TLSNQSFSNMT---QLLTLILS 86
Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
N L +P + L + HGN
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGN 112
Score = 51.1 bits (123), Expect = 9e-08
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 86 LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLD 142
L L N L +PP L +LR+L L N + +P L+HL + N L
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLAIGANPLY 139
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 52.6 bits (126), Expect = 1e-07
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 67 SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT 126
SL + L+L L +P + L VL L+ N L P
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLD--RNPSPDE 294
Query: 127 FCKNLTHLYLDNNLL 141
+ +L L N
Sbjct: 295 L-PQVGNLSLKGNPF 308
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 59 YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIG--RLTNLRVLCLTDNCL 116
+A + + S ++ L L NSL + L L L+ L
Sbjct: 207 ALRNAGMETPSGV-CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 117 QNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
+ +P L L+ L L N LD P +PQ+ + GN
Sbjct: 266 K--QVPKGLP--AKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGN 306
Score = 48.7 bits (116), Expect = 2e-06
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 60 FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRL----TNLRVLCLTDNC 115
S L K T++VL+L++ + + L L+ L L+ N
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239
Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
L++A+ + + L L L L +P L +
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274
Score = 46.8 bits (111), Expect = 6e-06
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 83 VEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFC----KNLTHLYLD 137
++VLS+ + + + L L L+DN C L L L
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALR 209
Query: 138 NNLLDALPGFLLSM 151
N ++ G ++
Sbjct: 210 NAGMETPSGVCSAL 223
Score = 43.0 bits (101), Expect = 1e-04
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 59 YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRL-----TNLRVLCLTD 113
+ + + P+ + +L+L++ S + + L L+VL +
Sbjct: 101 TLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 114 NCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-----MPQLDTVYRHGNH 163
N S F L+ L L +N G + + P L +
Sbjct: 159 AHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 66 LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA 119
L+LS+T + +++ K + VL L N L P L + L L N ++
Sbjct: 258 LNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFLDS 311
Score = 28.3 bits (63), Expect = 5.2
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 84 EVLSLKSNSLTSL--PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNN 139
E L + ++ L DI + +L+ L + + + + L L L L+N
Sbjct: 46 EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105
Query: 140 LLDA---LPGFLLSMPQLDTVYRHGNHN 164
+ P + P L+ +
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSW 133
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 52.8 bits (127), Expect = 1e-07
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 14/157 (8%)
Query: 287 LSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMH-------THSKAEDIPKE 335
L + L EL G+L + + I E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 395
V AAD ++G + + +F+ V K + AF+ D +G + L
Sbjct: 392 VDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDK-LESAFQKFDQDGNGKISVDELAS 450
Query: 396 VLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
V + L SK ++ + + V +E+F K+
Sbjct: 451 VFG--LDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Score = 32.4 bits (74), Expect = 0.34
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS 364
GK+S + V KE+ D+ G + F +F K++
Sbjct: 441 GKISVDELASVFGLDHLESKTWKEM---ISGIDSNNDGDVDFEEFCKMIQKLC 490
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 50.8 bits (122), Expect = 1e-07
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 66 LSLSYTPIGRRI----FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
LSL I ++I DT+E L + N + SL I +L NLRVL +++N + N
Sbjct: 75 LSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGE 132
Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRH 160
L L L L N L + + YR
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSE----YRI 167
Score = 49.7 bits (119), Expect = 4e-07
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
L + + + L + L L+ N ++ S +L+ +NL L L NL+ +
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIE 86
Query: 146 GFLLSMPQLDTVYRHGNH 163
L+ ++ N
Sbjct: 87 NLDAVADTLEELWISYNQ 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 51.6 bits (124), Expect = 1e-07
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
+L + + V+ + ++++ SL + TNL+ L L+ N + + S
Sbjct: 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLS--- 79
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
L L L ++ N L L G + L ++ N
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNN 116
Score = 48.9 bits (117), Expect = 1e-06
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+L S+T L L+ ++ ++ +Q+ + + F NL L+L +N +
Sbjct: 21 AVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQIS 76
Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
L L + +L+ + + N
Sbjct: 77 DLSP-LKDLTKLEELSVNRNR 96
Score = 48.5 bits (116), Expect = 1e-06
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
E LS+ N L +L L L L +N L++ +L KNL L + NN L +
Sbjct: 88 EELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKS 142
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
+ L + +L+ + HGN
Sbjct: 143 IVM-LGFLSKLEVLDLHGNE 161
Score = 40.0 bits (94), Expect = 8e-04
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 66 LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LS+ + + +EVL L N +T+ + RL + + LT N +
Sbjct: 133 LSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQKCVNEPV-- 189
Query: 124 TLTFCKNLTHLYLDNNLLD 142
K LY+ N + D
Sbjct: 190 -----KYQPELYITNTVKD 203
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 50.3 bits (121), Expect = 2e-07
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 84 EVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
E L + +TS P++ LT+L +L ++ + ++ + + + + L N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149
Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
L ++P+L ++ +
Sbjct: 150 TDIMPLKTLPELKSLNIQFDG 170
Score = 45.3 bits (108), Expect = 9e-06
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 66 LSLSYTPIGRRIFKC----DTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
L + + ++ +L + ++ I L + + L+ N +
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--GAIT 150
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L L L + + + G + P+L+ +Y
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQT 192
Score = 36.9 bits (86), Expect = 0.006
Identities = 9/77 (11%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 86 LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
L +S ++ ++ +L + L + + + + + + N+ L ++N
Sbjct: 28 GLLGQSSTANITE--AQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYN 82
Query: 146 GFLLSMPQLDTVYRHGN 162
+ + L+ + G
Sbjct: 83 P-ISGLSNLERLRIMGK 98
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 50.2 bits (120), Expect = 2e-07
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
++ F L + KA + + F + LSF DFL ++ S
Sbjct: 41 LRAQVPFEQILSLPE--LKANPFKERICRVFSTSP--AKDSLSFEDFLDLLSVFSDTATP 96
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVL-----VNWGEGLSSKE----VDQIFREANVTM 420
+ AF+ D GT+ + L ++ LS+ E +D I E+++
Sbjct: 97 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Query: 421 NSKVRYEDFVKIA 433
+ + +F +
Sbjct: 157 DGTINLSEFQHVI 169
Score = 45.5 bits (108), Expect = 6e-06
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 15/143 (10%)
Query: 256 YKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG--GK 313
++ F P + + + E + + L +P + + +
Sbjct: 23 HRRFCELLP-----QEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 77
Query: 314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH-------THSKA 366
LSF DFL ++ S + AF+ D G L+ D ++++ +
Sbjct: 78 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLS 137
Query: 367 EDIPKEVVDA-FKAADTTKSGTV 388
K+++D + +D + GT+
Sbjct: 138 ASEMKQLIDNILEESDIDRDGTI 160
Score = 41.7 bits (98), Expect = 1e-04
Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 39/192 (20%)
Query: 186 TRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFE----PGLFPGPLVDYIAREYNQYHV 241
T+ E+L ++ + + +V+S + ++ F + P L P + I R ++
Sbjct: 15 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPA 74
Query: 242 CHYCNSAEPLDRSGYKVFTFKTPYLE-FRECFFLF--ARNGTIKTLDELSVIMRSLGMSP 298
+ + LD VF+ F +F +GT+ ++LS ++ L
Sbjct: 75 KDSLSFEDFLD--LLSVFSDTATPDIKSHYAFRIFDFDDDGTL-NREDLSRLVNCLTGEG 131
Query: 299 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDFL 357
L K+++D + +D + G ++ +F
Sbjct: 132 EDTRLS-------------------------ASEMKQLIDNILEESDIDRDGTINLSEFQ 166
Query: 358 KVMHTHSKAEDI 369
V+ S++ D
Sbjct: 167 HVI---SRSPDF 175
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
+ +E LSL + L S+ ++ +L L+ L L++N + NLTHL L
Sbjct: 47 EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPNLTHLNLSG 104
Query: 139 NLLDALPG--FLLSMPQLDTVYRHGN 162
N L + L + L ++
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 49.4 bits (118), Expect = 2e-07
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 79 KCDTVEVLSLKSNSLTSLPPDIG-RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
K ++ L L N + + +L NL L L+ N L++ S L + L L L
Sbjct: 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128
Query: 138 NNLLDALPGF----LLSMPQL 154
N + L + +PQL
Sbjct: 129 NCEVTNLNDYRESVFKLLPQL 149
Score = 45.1 bits (107), Expect = 7e-06
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 85 VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDA 143
VL ++ + NL L L + L + S L L L L +N +
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGG 86
Query: 144 LPGFLLSMPQLDTVYRHGNH 163
L +P L + GN
Sbjct: 87 LDMLAEKLPNLTHLNLSGNK 106
Score = 33.9 bits (78), Expect = 0.039
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 102 RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHG 161
+R L L + + I NL L L N L ++ L +P+L +
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSE 80
Query: 162 NH 163
N
Sbjct: 81 NR 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 52.0 bits (124), Expect = 2e-07
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 66 LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
LSL + I + +E L L +N +T + + RLT L L L DN + +
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-- 170
Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
L L +LYL N + L L + LD +
Sbjct: 171 -LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 208
Score = 50.9 bits (121), Expect = 5e-07
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 58 QYFSHAFLLSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN 114
QY + L L+ + I + L L N + L + L L+ L L N
Sbjct: 62 QYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHN 119
Query: 115 CLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
+ + + L L LYL NN + + L + +LDT+ N
Sbjct: 120 GISDIN---GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDN 163
Score = 47.4 bits (112), Expect = 6e-06
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 66 LSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
TPI ++IF +LK S+T L ++ + ++ ++ S+
Sbjct: 4 TITVSTPI-KQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK--SVQ 59
Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
+ + N+T L+L+ N L + L ++ L ++ N
Sbjct: 60 G-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 50.9 bits (121), Expect = 3e-07
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 83 VEVLSLKSN-SLTSLPP-DIGRLTNLRVLCLTDNCLQNASI-PFTLTFCKNLTHLYLDNN 139
+ L +++ L L D+ L LR L + + L+ + P F L+ L L N
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFN 90
Query: 140 LLDALPGFLLSMPQLDTVYRHGN 162
L++L + L + GN
Sbjct: 91 ALESLSWKTVQGLSLQELVLSGN 113
Score = 34.7 bits (79), Expect = 0.057
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLD-NNLLDALP-GFLLSMPQLDTVYRHGNH 163
+ C D L L +NLT LY++ L L L + +L + +
Sbjct: 13 LRCTRDGAL---DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 49.8 bits (119), Expect = 4e-07
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 312 GKLSFPDFLKVMH-THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP 370
G ++ +F + T+ K V D F DT +G L F +F + + I
Sbjct: 65 GLINKEEFQLALFKTNKKESLFADRVFDLF---DTKHNGILGFEEFARALSVFHPNAPID 121
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLV--------NWGEGLSSKEVDQIFREANVTMNS 422
++ +F+ D + G + + +K ++V N + + +D+ F EA+ +
Sbjct: 122 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDG 181
Query: 423 KVRYEDFVKIA 433
K+ E++ +
Sbjct: 182 KIDKEEWRSLV 192
Score = 38.7 bits (90), Expect = 0.002
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 34/153 (22%)
Query: 215 KENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLE-FRECFF 273
+ F+ D + ++ H E VF P + F
Sbjct: 73 QLALFKTNKKESLFADRVFDLFDTKH-NGILGFEEFAR--ALSVFHPNAPIDDKIHFSFQ 129
Query: 274 LF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAED 331
L+ + G I E+ ++ + LAE G L +
Sbjct: 130 LYDLKQQGFI-ERQEVKQMVVAT------------LAESGMNLK--------------DT 162
Query: 332 IPKEVVDA-FKAADTTKSGKLSFPDFLKVMHTH 363
+ ++++D F+ ADT GK+ ++ ++ H
Sbjct: 163 VIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRH 195
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 46.4 bits (111), Expect = 5e-07
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVR 425
+D +E++ AFK D G + K ++ GE L+ EV++ +EA+ N +
Sbjct: 4 QDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63
Query: 426 YEDFVKI 432
+F+ +
Sbjct: 64 IPEFMDL 70
Score = 38.7 bits (91), Expect = 2e-04
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 37/97 (38%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP-TIAELKKYLAEKGGKLSFPDFLKVM 323
E F +F +G I DE IM+ +G P T AE+++ + E
Sbjct: 9 EILRAFKVFDANGDGVI-DFDEFKFIMQKVGEEPLTDAEVEEAMKE-------------- 53
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
AD +G + P+F+ ++
Sbjct: 54 -------------------ADEDGNGVIDIPEFMDLI 71
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 50.1 bits (120), Expect = 7e-07
Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 17/160 (10%)
Query: 287 LSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMHTHSKAED----------I 332
L + L EL + G+L + ++ + + +
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKY 392
EV A D K+G + + +F+ V + + AF+ D+ SG + +
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRER-LERAFRMFDSDNSGKISSTE 439
Query: 393 LKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
L + + S+ + E + + +V +++F ++
Sbjct: 440 LATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQM 477
Score = 30.4 bits (69), Expect = 1.1
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
GK+S + + + K V D G++ F +F +++
Sbjct: 433 GKISSTELATIFGVSDVDSETWKSV---LSEVDKNNDGEVDFDEFQQMLL 479
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 50.1 bits (120), Expect = 9e-07
Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 287 LSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMHTHSKAED-------IPKE 335
+ I L EL + G+L + ++ + ++ + +E
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 395
V + K D K+G + + +F+ V + + AF DT KSG + + L +
Sbjct: 401 VDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEER-LRRAFNLFDTDKSGKITKEELAN 459
Query: 396 VLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
+ +S K + + EA+ ++ + +++FV +
Sbjct: 460 LFG--LTSISEKTWNDVLGEADQNKDNMIDFDEFVSM 494
Score = 31.2 bits (71), Expect = 0.82
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
+K GK++ + + S +E +V AD K + F +F+ +MH
Sbjct: 447 DKSGKITKEELANLFGLTSISEKTWNDV---LGEADQNKDNMIDFDEFVSMMH 496
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 44.5 bits (106), Expect = 2e-06
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 30/96 (31%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
E F +G + T EL M +L +++
Sbjct: 8 ELEAAFKKLDANGDGYV-TALELQTFMVTLDAYKALSK---------------------- 44
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
+ + + K AD GK+S +FL
Sbjct: 45 -----DKVKEASAKLIKMADKNSDGKISKEEFLNAN 75
Score = 42.6 bits (101), Expect = 1e-05
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK------EVDQIFREANVT 419
A + E+ AFK D G V A L+ +V + ++ + A+
Sbjct: 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN 61
Query: 420 MNSKVRYEDFVKI 432
+ K+ E+F+
Sbjct: 62 SDGKISKEEFLNA 74
Score = 29.1 bits (66), Expect = 0.66
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 329 AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT----HSKAEDIPKEVVDA-FKAADTT 383
A + E+ AFK D G ++ + M T + ++D KE K AD
Sbjct: 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN 61
Query: 384 KSGTV 388
G +
Sbjct: 62 SDGKI 66
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 47.2 bits (112), Expect = 2e-06
Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 16/166 (9%)
Query: 283 TLDELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA 339
+ D+L+ + +S I + K +L + G+L+ DF+K+
Sbjct: 9 SKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHL 68
Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL-- 397
F D +G + F +F+ V+ T S+ K + AF+ D G + + ++
Sbjct: 69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEK-LSWAFELYDLNHDGYITFDEMLTIVAS 127
Query: 398 ----------VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
+N E V +IF+ + + + ++F + +
Sbjct: 128 VYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGS 173
Score = 37.9 bits (88), Expect = 0.003
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 36/164 (21%)
Query: 214 SKENF------FEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLE 267
++E+F F P P +++ +++ + + + E + + T +
Sbjct: 44 AREDFVKIYKQFFPFGSPEDFANHLFTVFDKDN-NGFIHFEEFIT--VLSTTSRGTLEEK 100
Query: 268 FRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
F L+ N T DE+ I+ S+ + M T
Sbjct: 101 LSWAFELYDLNHDGYITFDEMLTIVASVY----------------------KMMGSMVTL 138
Query: 327 SKAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
++ E P+ V FK D + G ++ +F + I
Sbjct: 139 NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGS---KVDPSI 179
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 46.4 bits (110), Expect = 3e-06
Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 285 DELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
D+L ++RS + + K + + G L+ +F K+ D F
Sbjct: 11 DQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFN 70
Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
D K+G + F +F+ + S+ E K ++ AF+ D +G + + ++
Sbjct: 71 VFDADKNGYIDFKEFICALSVTSRGELNDK-LIWAFQLYDLDNNGLISYDEMLRIVDAIY 129
Query: 402 EGLSS------------KEVDQIFREANVTMNSKVRYEDFVKIA 433
+ + S K V++IF + + ++ E+F + +
Sbjct: 130 KMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS 173
Score = 34.4 bits (79), Expect = 0.036
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 27/103 (26%)
Query: 269 RECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHS 327
F L+ + + DE+ I+ ++ G + P+
Sbjct: 102 IWAFQLYDLDNNGLISYDEMLRIVDAI------------YKMVGSMVKLPE--------- 140
Query: 328 KAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
ED P++ V+ F D K G+L+ +F + + I
Sbjct: 141 -DEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS---KRDPTI 179
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 46.9 bits (112), Expect = 4e-06
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 64 FLLSLSY----TPIGRRIFK--CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNC-L 116
F+L ++ T I F+ C+ L L +N TS+ T L + L N L
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192
Query: 117 QNASIPFTLTF---CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164
I F + L + + ALP L L +
Sbjct: 193 T--VID-KDAFGGVYSGPSLLDVSQTSVTALPSKGLE--HLKELIARNTWT 238
Score = 45.0 bits (107), Expect = 2e-05
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 28/109 (25%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNC--------------------LQNA- 119
+ + L L L ++P L N+ + ++ + ++N
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 120 ---SIP-FTLTFCKNLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGN 162
I L L L + N L P + S + N
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 45.2 bits (107), Expect = 9e-06
Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
Query: 283 TLDELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA 339
+ + + R + + + K ++ + G+L F K+ D K
Sbjct: 9 KPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFV 68
Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL-- 397
F D K G++ F +F++ + S+ K + AFK D G + + ++
Sbjct: 69 FNVFDENKDGRIEFSEFIQALSVTSRGTLDEK-LRWAFKLYDLDNDGYITRNEMLDIVDA 127
Query: 398 ----VNWGEGLSSKE------VDQIFREANVTMNSKVRYEDFVKIA 433
V L +E VD+IF + + K+ ++F + +
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGS 173
Score = 38.7 bits (90), Expect = 0.002
Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 45/193 (23%)
Query: 186 TRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFE------PGLFPGPLVDYIAREYNQY 239
T EV + ++ S F + P P ++ +++
Sbjct: 23 TEKEVQQ----WYK--GFIKDC-PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDEN 75
Query: 240 HVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLF--ARNGTIKTLDELSVIMRSLGMS 297
+E + V + T + R F L+ +G I T +E+ I+ ++
Sbjct: 76 K-DGRIEFSEFIQ--ALSVTSRGTLDEKLRWAFKLYDLDNDGYI-TRNEMLDIVDAIYQM 131
Query: 298 PTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDF 356
+ + E+ P++ VD F D GKL+ +F
Sbjct: 132 ----------------------VGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEF 169
Query: 357 LKVMHTHSKAEDI 369
+ I
Sbjct: 170 QEGS---KADPSI 179
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 45.4 bits (107), Expect = 9e-06
Identities = 21/168 (12%), Positives = 64/168 (38%), Gaps = 18/168 (10%)
Query: 283 TLDELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA 339
+ + L + + S + + +L + G+++ F + D
Sbjct: 17 SKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHV 76
Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399
F++ D+ G L F +++ +H + + K + AF D +GT+ + +++
Sbjct: 77 FRSFDSNLDGTLDFKEYVIALHMTTAGKTNQK-LEWAFSLYDVDGNGTISKNEVLEIVMA 135
Query: 400 WGEGLSSKE--------------VDQIFREANVTMNSKVRYEDFVKIA 433
+ ++ ++ ++I++ + K+ ++F++
Sbjct: 136 IFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGT 183
Score = 37.3 bits (86), Expect = 0.004
Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 31/158 (19%)
Query: 214 SKENF------FEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLE 267
+++ F F P P ++ R ++ + E + + T +
Sbjct: 52 TQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLD-GTLDFKEYVI--ALHMTTAGKTNQK 108
Query: 268 FRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
F L+ +G + +E+ I+ ++ T ++K +
Sbjct: 109 LEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDD----------------- 151
Query: 327 SKAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTH 363
E+ P++ + +K KL+ +F++ +
Sbjct: 152 ---ENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLAN 186
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 42.2 bits (100), Expect = 1e-05
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
FK D G +S+ + + ++ + + FK+ D +G +
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEI 53
Score = 41.8 bits (99), Expect = 1e-05
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
FK D G V + +K + + + + IF+ + N ++ +F K
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362
G +S+ + + ++ + + FK+ D +G++ +F K +
Sbjct: 15 GAVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 41.1 bits (97), Expect = 3e-05
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 370 PKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWGEGL--SSKEVDQIFREANVTMNSKVR 425
P+E+ AF+ + + LK V+ G L +D++ E + + +V
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63
Query: 426 YEDFVKI 432
+E+F+ +
Sbjct: 64 FEEFLVM 70
Score = 39.9 bits (94), Expect = 8e-05
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 36/98 (36%)
Query: 267 EFRECFFLFAR----NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 322
E + F +FA I + +EL ++M++LG S
Sbjct: 6 EIKGAFEVFAAKEGDPNQI-SKEELKLVMQTLGPSLL----------------------- 41
Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
+ + + D G++SF +FL +M
Sbjct: 42 --------KGMSTLDEMIEEVDKNGDGEVSFEEFLVMM 71
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 40.8 bits (96), Expect = 5e-05
Identities = 9/74 (12%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
L E++ + F A D +SG + + + + + + + +F+
Sbjct: 14 LYFQGADGDGEEL-ARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRL 70
Query: 417 NVTMNSKVRYEDFV 430
+ + + +++F
Sbjct: 71 DADRDGAITFQEFA 84
Score = 40.8 bits (96), Expect = 6e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
R F N G + +E + L + P A+ + + G ++F +F
Sbjct: 28 RLRSVFAACDANRSGRL-EREEFRALCTELRVRP--ADAEAVFQRLDADRDGAITFQEFA 84
Query: 321 KVM 323
+
Sbjct: 85 RGF 87
Score = 40.0 bits (94), Expect = 1e-04
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
L E++ + F A D +SG+L +F + + F+
Sbjct: 14 LYFQGADGDGEEL-ARLRSVFAACDANRSGRLEREEFRALCTELRVRPA---DAEAVFQR 69
Query: 380 ADTTKSGTV 388
D + G +
Sbjct: 70 LDADRDGAI 78
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 42.9 bits (101), Expect = 8e-05
Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 13/136 (9%)
Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
G ++ F ++ D F A DT +G +SF DF+K + +
Sbjct: 78 PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQ 137
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVL------VNWGEGLSSKE------VDQIFREAN 417
K + AF D K G + + + ++ + KE V+ F++ +
Sbjct: 138 EK-LNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMD 196
Query: 418 VTMNSKVRYEDFVKIA 433
+ V ++F++
Sbjct: 197 KNKDGVVTIDEFIESC 212
Score = 35.2 bits (81), Expect = 0.028
Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 43/207 (20%)
Query: 167 KSTFMWYHSDIHARIRSTS-TRDEVLRKQKKLHQPSRLQDLAVQSVIASKENF------F 219
+T + + T+ E+ + L++ ++ V+ ++E F F
Sbjct: 42 MATVRHRPEALELLEAQSKFTKKEL----QILYR--GFKNECPSGVV-NEETFKEIYSQF 94
Query: 220 EPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLF--AR 277
P ++ ++ H + + + G + T + F L+ +
Sbjct: 95 FPQGDSTTYAHFLFNAFDTDHN-GAVSFEDFIK--GLSILLRGTVQEKLNWAFNLYDINK 151
Query: 278 NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV 337
+G I T +E+ IM+++ D + ED P++ V
Sbjct: 152 DGYI-TKEEMLDIMKAI----------------------YDMMGKCTYPVLKEDAPRQHV 188
Query: 338 DA-FKAADTTKSGKLSFPDFLKVMHTH 363
+ F+ D K G ++ +F++
Sbjct: 189 ETFFQKMDKNKDGVVTIDEFIESCQKD 215
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 41.7 bits (98), Expect = 3e-04
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 27/110 (24%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDN--------------------CLQNA- 119
L L + +L + ++ N ++ A
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 120 ---SIP-FTLTFCKNLTHLYLDNNLLDALPGFL-LSMPQLDTVYRHGNHN 164
I NL +L + N + LP + Q + N N
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140
Score = 38.3 bits (89), Expect = 0.004
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTD-NCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
+L L N + + T L L L+D N L+ L + +
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIH 215
Query: 143 ALP-GFLLSMPQLDTVYRHGN 162
+LP L ++ +L +
Sbjct: 216 SLPSYGLENLKKLRARSTYNL 236
Score = 37.5 bits (87), Expect = 0.006
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNN-LL 141
V + + +T +P D+ N L L+ I + +L + + N +L
Sbjct: 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVL 67
Query: 142 DALP-GFLLSMPQLDTVY-RHGNH 163
+ + ++P+L + N+
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANN 91
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 40.6 bits (95), Expect = 3e-04
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
G ++ F ++ D F A DTT++G + F DF+ + +
Sbjct: 32 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVH 91
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHV------LVNWGEGLSSKE------VDQIFREAN 417
K + F D K G + + + + ++ KE VD F++ +
Sbjct: 92 EK-LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 150
Query: 418 VTMNSKVRYEDFVK 431
+ V ++F++
Sbjct: 151 KNKDGIVTLDEFLE 164
Score = 33.6 bits (77), Expect = 0.067
Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 42/187 (22%)
Query: 186 TRDEVLRKQKKLHQPSRLQDLAVQSVIASKENF------FEPGLFPGPLVDYIAREYNQY 239
T+ E+ + L++ ++ V+ ++E F F P Y+ ++
Sbjct: 16 TKREL----QVLYR--GFKNEXPSGVV-NEETFKQIYAQFFPHGDASTYAHYLFNAFDTT 68
Query: 240 HVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLF--ARNGTIKTLDELSVIMRSLGMS 297
+ + + T + + R F L+ ++G I +E+ I++++
Sbjct: 69 Q-TGSVKFEDFVT--ALSILLRGTVHEKLRWTFNLYDINKDGYI-NKEEMMDIVKAIY-- 122
Query: 298 PTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDF 356
D + ED P++ VD F+ D K G ++ +F
Sbjct: 123 --------------------DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEF 162
Query: 357 LKVMHTH 363
L+
Sbjct: 163 LESXQED 169
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 40.8 bits (95), Expect = 5e-04
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 13/136 (9%)
Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
G + F + D F A D +G + F DF+ + +
Sbjct: 105 PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVH 164
Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE------------VDQIFREAN 417
K + AF D K G + + + ++ + + + V++ F++ +
Sbjct: 165 EK-LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMD 223
Query: 418 VTMNSKVRYEDFVKIA 433
+ V ++F++
Sbjct: 224 RNQDGVVTIDEFLETC 239
Score = 37.3 bits (86), Expect = 0.006
Identities = 42/210 (20%), Positives = 66/210 (31%), Gaps = 35/210 (16%)
Query: 172 WYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDY 231
W S + +S + L + HQP L L Q+ KE
Sbjct: 50 WILSSAAPQGSDSSDSELELSTVR--HQPEGLDQLQAQTKFTKKE--------------- 92
Query: 232 IAREYNQYH-VCHYCNSAEPLDRSGYKVF---TFKTPYLEFRECFFLFARNGTIKT---L 284
+ Y + C E + Y F T Y F F NG I +
Sbjct: 93 LQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFV 152
Query: 285 DELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSK----------AEDIPK 334
LS+++R Y K G ++ + L +M + ED P
Sbjct: 153 VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPL 212
Query: 335 EVVDA-FKAADTTKSGKLSFPDFLKVMHTH 363
E V+ F+ D + G ++ +FL+
Sbjct: 213 EHVERFFQKMDRNQDGVVTIDEFLETCQKD 242
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 39.6 bits (93), Expect = 0.002
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 82 TVEVLSLKSNSLTSLPPDIGRL----TNLRVLCLTDNCLQNAS---IPFTLTFCKNLTHL 134
++ L ++ L+ L +V+ L D L A I L L L
Sbjct: 4 DIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 135 YLDNNLL 141
L +N L
Sbjct: 62 NLRSNEL 68
Score = 36.9 bits (86), Expect = 0.012
Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 25/97 (25%)
Query: 66 LSLSYTPIG--------RRIFKCDTVEVLSLKSNSLTSLPPDIG----------RLTNLR 107
LSL + + T++ L L N L D G L
Sbjct: 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG----DAGLQLLCEGLLDPQCRLE 145
Query: 108 VLCLTDNCLQNAS---IPFTLTFCKNLTHLYLDNNLL 141
L L L AS + L + L + NN +
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Score = 34.9 bits (81), Expect = 0.046
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 25/98 (25%)
Query: 66 LSLSYTPIGRR--------IFKCDTVEVLSLKSNSLTSLPPDIG----------RLTNLR 107
L + + + + L + +N L D G + LR
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE----DAGVRELCQGLGQPGSVLR 373
Query: 108 VLCLTDNCLQNASIPF---TLTFCKNLTHLYLDNNLLD 142
VL L D + ++S TL +L L L NN L
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
Score = 34.9 bits (81), Expect = 0.054
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 25/97 (25%)
Query: 66 LSLSYTPIGRR--------IFKCDTVEVLSLKSNSLTSLPPDIG----------RLTNLR 107
L + I + + ++++ LSL N L D G L
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG----DEGARLLCETLLEPGCQLE 316
Query: 108 VLCLTDNCLQNASIPF---TLTFCKNLTHLYLDNNLL 141
L + A L + L L + NN L
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353
Score = 34.6 bits (80), Expect = 0.064
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 22/84 (26%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLS--LKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS--- 120
L++S I V VL LK + L L L + + +
Sbjct: 175 LTVSNNDIN-----EAGVRVLCQGLKDSPCQ-----------LEALKLESCGVTSDNCRD 218
Query: 121 IPFTLTFCKNLTHLYL-DNNLLDA 143
+ + +L L L N L D
Sbjct: 219 LCGIVASKASLRELALGSNKLGDV 242
Score = 30.3 bits (69), Expect = 1.3
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 82 TVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK------- 129
+ VL L ++ SL + +LR L L++NCL +A I L +
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI---LQLVESVRQPGC 427
Query: 130 NLTHLYLDNNLLD-----ALPGFLLSMPQLDTV 157
L L L + L P L +
Sbjct: 428 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 104 TNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-----ALPGFLLSMPQL 154
+++ L + L +A L + + LD+ L + L P L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 22/98 (22%)
Query: 66 LSLSYTPIG--------RRIFKCDTVEVLSLKSNSLTSLPPDIG-----------RLTNL 106
+ LS IG I +E+ + +I + L
Sbjct: 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96
Query: 107 RVLCLTDNCLQNASIPF---TLTFCKNLTHLYLDNNLL 141
+ L+DN + L+ L HLYL NN L
Sbjct: 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Score = 38.5 bits (90), Expect = 0.003
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 27/124 (21%)
Query: 66 LSLSYTPIGRR--------IFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLT 112
SL I + + D+V+ + L N++ L +I +L + +
Sbjct: 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68
Query: 113 DNCLQN---------ASIPFTLTFCKNLTHLYLDNNLL-----DALPGFLLSMPQLDTVY 158
D + L C L + L +N + L FL L+ +Y
Sbjct: 69 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128
Query: 159 RHGN 162
H N
Sbjct: 129 LHNN 132
Score = 38.5 bits (90), Expect = 0.003
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 79 KCDTVEVLSLKSNSLTS------LPPDIGRLTNLRVLCLTDNCLQNA---SIPFTLTFCK 129
+ + + N + L + L+VL L DN + ++ L
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 130 NLTHLYLDNNLL 141
NL L L++ LL
Sbjct: 245 NLRELGLNDCLL 256
Score = 37.8 bits (88), Expect = 0.005
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 19/97 (19%)
Query: 66 LSLSYTPIGRR---------IFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCL 111
+ + I + C ++VL L+ N+ T +L + NLR L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251
Query: 112 TDNCLQNA---SIPFTLTFCKN--LTHLYLDNNLLDA 143
D L ++ + +N L L L N ++
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
Score = 35.8 bits (83), Expect = 0.026
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 25/99 (25%)
Query: 66 LSLSYTPIGRR--------IFKCDTVEVLSLKSNSLT--------------SLPPDIGRL 103
+ LS G + K +E L L +N L ++
Sbjct: 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158
Query: 104 TNLRVLCLTDNCLQNASIPF---TLTFCKNLTHLYLDNN 139
LR + N L+N S+ T + L + + N
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197
Score = 33.1 bits (76), Expect = 0.15
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 27/100 (27%)
Query: 66 LSLSYTPIGRR--------IFKCDTVEVLSLKSNSLTSLPPDIG-----------RLTNL 106
L L + + L L L+ G L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS----ARGAAAVVDAFSKLENIGL 276
Query: 107 RVLCLTDNCLQNA---SIPFTL-TFCKNLTHLYLDNNLLD 142
+ L L N ++ ++ + +L L L+ N
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
Score = 31.6 bits (72), Expect = 0.50
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 73 IGRRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDN------------C 115
+ + + KC + + L N+ L + + T L L L +N
Sbjct: 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145
Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDA 143
LQ ++ L + N L+
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLEN 173
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 104 TNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
V C L AS+P + T L L N L ALP G L ++P L T + N
Sbjct: 9 AGTLVDC-GRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 82 TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDN 114
L L N+LT+LPP + L LR L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 33.2 bits (76), Expect = 0.054
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 80 CDTVEV-LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHL 134
C V + + SLP + L LT N L ++P L L
Sbjct: 8 CAGTLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT--ALPPGLLDALP---ALRTA 60
Query: 135 YLDNNLLD 142
+L N
Sbjct: 61 HLGANPWR 68
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 37.7 bits (87), Expect = 0.004
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD 375
F H A + +AF DTT++G + F DF+ + + K +
Sbjct: 74 FKQIYAQFFPHGDASTYAHYLFNAF---DTTQTGSVKFEDFVTALSILLRGTVHEK-LRW 129
Query: 376 AFKAADTTKSGTVPAKYLKHVL------VNWGEGLSSKE------VDQIFREANVTMNSK 423
F D K G + + + ++ + KE VD F++ + +
Sbjct: 130 TFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGI 189
Query: 424 VRYEDFVKIA 433
V ++F++
Sbjct: 190 VTLDEFLESC 199
Score = 35.0 bits (80), Expect = 0.031
Identities = 34/216 (15%), Positives = 65/216 (30%), Gaps = 55/216 (25%)
Query: 177 IHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQ--------------------SVIASKE 216
R S ++ L H+P L+ L Q S + ++E
Sbjct: 13 TKQRRPSKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEE 72
Query: 217 NF------FEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRE 270
F F P Y+ ++ + + + T + + R
Sbjct: 73 TFKQIYAQFFPHGDASTYAHYLFNAFDTTQ-TGSVKFEDFVT--ALSILLRGTVHEKLRW 129
Query: 271 CFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSK 328
F L+ ++G I +E+ I++++ L
Sbjct: 130 TFNLYDINKDGYI-NKEEMMDIVKAI--------YDMMGKYTYPVLK------------- 167
Query: 329 AEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTH 363
ED P++ VD F+ D K G ++ +FL+
Sbjct: 168 -EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQED 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.7 bits (87), Expect = 0.004
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 79 KCDTVEVLSLKSNSLTSLPP---DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
+ L+L +N L L + + NL++L L+ N L++ + K L L+
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELW 226
Query: 136 LDNN 139
LD N
Sbjct: 227 LDGN 230
Score = 31.9 bits (72), Expect = 0.35
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 58 QYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQ 117
+Y L L + + VL+ +S +L + L L L++N L
Sbjct: 124 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY 183
Query: 118 N-ASIPFTLTFCKNLTHLYLDNNLLDAL 144
+ + NL L L N L +
Sbjct: 184 RLDDMSSIVQKAPNLKILNLSGNELKSE 211
Score = 29.2 bits (65), Expect = 2.7
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 93 LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF---LL 149
L L D + + L A++ L L L NN L L +
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 150 SMPQLDTVYRHGNH 163
P L + GN
Sbjct: 194 KAPNLKILNLSGNE 207
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 37.6 bits (87), Expect = 0.007
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 22 FSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAF------LLSLSYTPIGR 75
+ KN P + + C ++ Q + F + LS + I
Sbjct: 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107
Query: 76 R-----IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNC--LQNASIPFTLTF 127
+ +C ++ LSL+ L+ + + + +NL L L+ C ++ L+
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSS 166
Query: 128 CKNLTHLYL 136
C L L L
Sbjct: 167 CSRLDELNL 175
Score = 33.3 bits (76), Expect = 0.15
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 100 IGRLTNLRVLCL------TDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMP 152
+L L+ L L L L L L + + D L ++P
Sbjct: 243 FFQLNYLQHLSLSRCYDIIPETLLE------LGEIPTLKTLQVFGIVPDGTLQLLKEALP 296
Query: 153 QLD 155
L
Sbjct: 297 HLQ 299
Score = 32.9 bits (75), Expect = 0.19
Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 1/105 (0%)
Query: 51 CSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLC 110
+ L + P V + + + ++ +
Sbjct: 40 YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99
Query: 111 LTDNCLQNASIPFTLTFCKNLTHLYLDN-NLLDALPGFLLSMPQL 154
L+++ ++ +++ L+ C L +L L+ L D + L L
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144
Score = 31.8 bits (72), Expect = 0.45
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 75 RRIFKCDTVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
F V+ + L ++ + +L + + + L+ L L + I TL NL
Sbjct: 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-GLRLSDPIVNTLAKNSNLV 145
Query: 133 HLYLDN 138
L L
Sbjct: 146 RLNLSG 151
Score = 27.5 bits (61), Expect = 9.9
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 103 LTNLRVLCLTDNC--LQNASIPFTLTFCKNLTHLYLDN--NLLDALPGFLLSMPQL 154
+ L L+ LQ + + + C NL HL L + L + + L
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 37.6 bits (87), Expect = 0.009
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 80 CDTVEVLSLKSNSLTS--LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
+ L L L + I + NL VL N + + + +CK L L ++
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350
Query: 138 N 138
Sbjct: 351 R 351
Score = 35.3 bits (81), Expect = 0.035
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 80 CDTVEVLSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH 133
V + L + D G NL+ L + C +I +T +L +
Sbjct: 462 SPNVRWMLLGYVGES----DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517
Query: 134 LYLDN-NLLDALPGFL-LSMPQLD 155
L++ + ++ P +
Sbjct: 518 LWVQGYRASMTGQDLMQMARPYWN 541
Score = 34.5 bits (79), Expect = 0.067
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Query: 79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
+ L L +P +R L L L+ + C NL L N
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
Query: 139 NLLDA-LPGFLLSMPQL 154
+ D L QL
Sbjct: 328 VIGDRGLEVLAQYCKQL 344
Score = 31.1 bits (70), Expect = 0.86
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNC-LQNASIPFTLTFCKNLTHLYLDNNLL 141
E N +P L R LC + +P F + L L LL
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305
Query: 142 --DALPGFLLSMPQL 154
+ + P L
Sbjct: 306 ETEDHCTLIQKCPNL 320
Score = 30.3 bits (68), Expect = 1.3
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 86 LSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
L+ LT D+G N+R + L + + C NL L +
Sbjct: 443 FYLRQGGLT----DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
Query: 140 LL--DALPGFLLSMPQL 154
A+ + +P L
Sbjct: 499 CFSERAIAAAVTKLPSL 515
Score = 30.3 bits (68), Expect = 1.6
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 79 KCDTVEVLSLKSN--------SLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKN 130
C ++ L ++ + L L L L + + C++
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221
Query: 131 LTHLYLDNNLLDALPGFLLSMPQL 154
L + + + + L GF + L
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANL 245
Score = 29.1 bits (65), Expect = 3.3
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 76 RIFKCDTVEVLSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNASIPFTLTFCK 129
RI + + + + ++ G L + + + + N S+ T+ K
Sbjct: 348 RIERGADEQGMEDEEGLVS----QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403
Query: 130 NLTHLYL 136
NL L
Sbjct: 404 NLCDFRL 410
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 36.4 bits (84), Expect = 0.019
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 69 SYTPIGRRIFKCDTVEVLSLKSN-SLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTF 127
Y+ + + C + LS + LP + L L L+ +Q+ + L
Sbjct: 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312
Query: 128 CKNLTHLYLDNNLLD-ALPGFLLSMPQL 154
C L L++ + + D L + L
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDL 340
Score = 32.9 bits (75), Expect = 0.19
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 79 KCDTVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
C + L+L ++ L + + L+ L + D +++A + + CK+L L +
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRV 345
Query: 137 DN 138
Sbjct: 346 FP 347
Score = 31.8 bits (72), Expect = 0.51
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 80 CDTVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQ--NASIPFTLTFCKNLTHLY 135
+E + LK +T L N +VL L+ +C + C+NL L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS-SCEGFSTDGLAAIAATCRNLKELD 162
Query: 136 LDNNLLDALPGFLLS 150
L + +D + G LS
Sbjct: 163 LRESDVDDVSGHWLS 177
Score = 31.8 bits (72), Expect = 0.53
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 80 CDTVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
+E+LS+ + + + +LR L + D + ++ + + + L++
Sbjct: 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
Query: 138 N-NLLD-ALPGFLLSMPQL 154
+ ++ A MP+L
Sbjct: 515 SCSVSFGACKLLGQKMPKL 533
Score = 30.3 bits (68), Expect = 1.6
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 83 VEVLSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
+ + LT P DIG +LR L L+ L + + T+ K + L +
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSV 463
Query: 137 DN-NLLDA-LPGFLLSMPQL 154
D + L L
Sbjct: 464 AFAGDSDLGMHHVLSGCDSL 483
Score = 29.1 bits (65), Expect = 3.3
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 68 LSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTF 127
+ P G + +E +S L + L+ + +TD+CL+ +
Sbjct: 82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEI--------RLKRMVVTDDCLELIA-----KS 128
Query: 128 CKNLTHLYLDN 138
KN L L +
Sbjct: 129 FKNFKVLVLSS 139
Score = 27.6 bits (61), Expect = 9.4
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 24/110 (21%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSL-----PPDIG---------RLTNLRVLCL 111
L L + + + SL SL ++ R NL+ L L
Sbjct: 161 LDLRESDVDDV--SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218
Query: 112 TDNCLQNASIPFTLTFCKNLTHLYL-------DNNLLDALPGFLLSMPQL 154
+ + L L L ++ L L +L
Sbjct: 219 N-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 33.6 bits (77), Expect = 0.026
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
F++ S + K+ LS E+ I+ ++ + + +F
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLPEFC 79
Score = 29.0 bits (65), Expect = 1.2
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 304 KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVMH 361
+ + +S T SK + + ++ +D G L+ P+F H
Sbjct: 29 RSLQPDPSSFISGSVAKNFF-TKSK---LSIPELSYIWELSDADCDGALTLPEFCAAFH 83
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 33.6 bits (77), Expect = 0.031
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
F + D T SG + + +L+ L ++ I+ +++ + K+ E+F+
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLTAEEFI 71
Score = 29.0 bits (65), Expect = 1.1
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVV-DAFKAADTTKSGKLSFPDFLKVMH---TH 363
G L+ P ++ S +P+ + + +D + GKL+ +F+ MH
Sbjct: 25 KTMSGHLTGPQARTIL-MQSS---LPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVA 80
Query: 364 SKAEDIPKEV 373
+ +P +
Sbjct: 81 MSGQPLPPVL 90
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding,
tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate
aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB:
3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Length = 332
Score = 35.2 bits (80), Expect = 0.035
Identities = 11/128 (8%), Positives = 36/128 (28%), Gaps = 14/128 (10%)
Query: 168 STFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGP 227
++Y D ++ + + ++ + + F E +
Sbjct: 128 KFLLYYDVDGDPQVNV--------------QKQAYIERIGSECQAEDIPFFLEILTYDET 173
Query: 228 LVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDEL 287
+ + + E+ + V ++ + + + K FA + + +E
Sbjct: 174 ISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEA 233
Query: 288 SVIMRSLG 295
+ R
Sbjct: 234 AQAFREQE 241
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 35.5 bits (81), Expect = 0.040
Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 40/214 (18%)
Query: 225 PGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLE-FRECFFLFARNGTIKT 283
P D++ R +++ + + + + F+ F A + +
Sbjct: 492 PNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEIS 551
Query: 284 LDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 343
+ EL I+ + K L F + + + +V+
Sbjct: 552 VKELQTIL-------------NRIISKHKDLRTNGF---------SLESCRSMVNLM--- 586
Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
D +GKL +F + + I F+ D KSG++ A ++ + G
Sbjct: 587 DRDGNGKLGLVEFNILWNRIRNYLTI-------FRKFDLDKSGSMSAYEMRMAIEAAGFK 639
Query: 404 LSSKEVDQI---FREANVTMNSKVRYEDFVKIAC 434
L + I F + + ++ +++FV+
Sbjct: 640 LPCQLHQVIVARFADDELIID----FDNFVRCLV 669
Score = 34.0 bits (77), Expect = 0.10
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
D+ +GKL F +F + + +I K+ +K +T +SGT+ + L G
Sbjct: 784 DSDTTGKLGFEEFKYLWN------NI-KKWQGIYKRFETDRSGTIGSNELPGAFEAAGFH 836
Query: 404 LSSKEVDQIF-REANVTMNSKVRYEDFV 430
L+ I R ++ T N + +++F+
Sbjct: 837 LNQHIYSMIIRRYSDETGN--MDFDNFI 862
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 32.8 bits (75), Expect = 0.047
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
F D G V ++ + + G L S + I+ + K+ + F
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQFA 67
Score = 32.4 bits (74), Expect = 0.062
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 299 TIAELKKYLA-------EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGK 350
+ AE KY + G +S + ++ + +P ++ + DT GK
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIF-LKTG---LPSTLLAHIWSLCDTKDCGK 60
Query: 351 LSFPDFLKVMH----THSKAEDIPKEV 373
LS F H K D P +
Sbjct: 61 LSKDQFALAFHLISQKLIKGIDPPHVL 87
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 34.4 bits (78), Expect = 0.083
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
D SGKL +F + I K ++ D +SGT+ + ++ L G
Sbjct: 585 DEDGSGKLGLKEFYILWT------KIQKYQ-KIYREIDVDRSGTMNSYEMRKALEEAGFK 637
Query: 404 LSSKEVDQI---FREANVTMNSKVRYEDFV 430
L + I F + + ++ +++FV
Sbjct: 638 LPCQLHQVIVARFADDELIID----FDNFV 663
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 31.6 bits (72), Expect = 0.088
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
FK +G +P K L E+ I+ ++ + + ++F
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFC 66
Score = 31.2 bits (71), Expect = 0.13
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 299 TIAELKKYLA-------EKGGKLSFPDFLKVMHTHSKAEDIPKEVV-DAFKAADTTKSGK 350
T + + Y+ + G + + T SK +P + ++ +D K G
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFF-TKSK---LPILELSHIWELSDFDKDGA 59
Query: 351 LSFPDFLKVMHTHSKA---EDIPKEV 373
L+ +F H D+P+++
Sbjct: 60 LTLDEFCAAFHLVVARKNGYDLPEKL 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 33.5 bits (77), Expect = 0.11
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 21/84 (25%)
Query: 66 LSLSYTPIGRRIFKCDTVEVLS--LKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS--- 120
L LS +G + L+ S ++ L L NCL S
Sbjct: 201 LDLSANLLGL-----KSYAELAYIFSSIP-----------NHVVSLNLCLNCLHGPSLEN 244
Query: 121 IPFTLTFCKNLTHLYLDNNLLDAL 144
+ K+L +YLD +++ +
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNM 268
Score = 30.4 bits (69), Expect = 1.0
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 27/101 (26%)
Query: 66 LSLSYTPIG----RRIFKC-----DTVEVLSLKSNSLTSLPPDIG----------RLTNL 106
L LS + + + +V L+L NSL N+
Sbjct: 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANV 82
Query: 107 RVLCLTDNCLQNASIPF---TLTFCK-NLTHLYLDNNLLDA 143
L L+ N L S TL +T L L N +
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
Score = 28.9 bits (65), Expect = 3.3
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 27/99 (27%)
Query: 66 LSLSYTPIG----RRIFK-----CDTVEVLSLKSNSLTSLPPDIG----------RLTNL 106
L+LS +G + + V L+L N L+ +
Sbjct: 56 LNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS----YKSSDELVKTLAAIPFTI 111
Query: 107 RVLCLTDNCLQNASIPF---TLTFC-KNLTHLYLDNNLL 141
VL L N + S + ++T L L N L
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 32.6 bits (74), Expect = 0.14
Identities = 14/164 (8%), Positives = 37/164 (22%), Gaps = 50/164 (30%)
Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAE----------LKKYLAEKGGKLS 315
R I +L ++ ++ + + + G+L
Sbjct: 6 HHHHHSSGLVPRGSDI-DATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLD 64
Query: 316 FPDFLKVMHTHSK-------------------------------AEDIPKEVVDAFKAAD 344
+F ++ I +E++
Sbjct: 65 QEEFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRY 124
Query: 345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
+ G++SFP + + + + F+ G
Sbjct: 125 SDSVGRVSFPSLVCFLMRL-------EAMAKTFRNLSKDGKGLY 161
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 31.3 bits (71), Expect = 0.15
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 296 MSPTIAELKKYLAEKGGKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSGKL 351
M + K+ A G L+ D +M + + P V K D + GK+
Sbjct: 8 METMMFTFHKF-AGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKV 66
Query: 352 SFPDFLKVM 360
F F ++
Sbjct: 67 GFQSFFSLI 75
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 32.8 bits (75), Expect = 0.19
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 20/73 (27%)
Query: 82 TVEVLSLKSNSLTSLPPDIGR------LTNLRVLCLTDNCLQNASIPFTLTFCK------ 129
++ ++L S L G R L L N L +
Sbjct: 102 ALDEVNLASCQLD----PAGLRTLLPVFLRARKLGLQLNSLGPEAC---KDLRDLLLHDQ 154
Query: 130 -NLTHLYLDNNLL 141
+T L L NN L
Sbjct: 155 CQITTLRLSNNPL 167
Score = 32.0 bits (73), Expect = 0.33
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 66 LSLSYTPIGRRIFKCDT-VEVLS--LKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
L L +G + L L + + L L++N L A +
Sbjct: 131 LGLQLNSLG------PEACKDLRDLLLHDQ-----------CQITTLRLSNNPLTAAGVA 173
Query: 123 F---TLTFCKNLTHLYLDNNLL 141
L ++THL L + L
Sbjct: 174 VLMEGLAGNTSVTHLSLLHTGL 195
Score = 30.5 bits (69), Expect = 1.2
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 16/73 (21%)
Query: 82 TVEVLSLKSNSLTSLPPDIG---------RLTNLRVLCLTDNCLQNASIPF---TLTFCK 129
+V LSL L D G R L+ L + N + +
Sbjct: 184 SVTHLSLLHTGLG----DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239
Query: 130 NLTHLYLDNNLLD 142
+L L+L N L
Sbjct: 240 SLELLHLYFNELS 252
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 33.0 bits (74), Expect = 0.21
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 302 ELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
L+K K K++F + + + D F+ D +++ L +
Sbjct: 16 CLRKADKNKDNKMNFKELKDFLKELNIQVD-DGYARKIFRECDHSQTDSLEDEEIETFYK 74
Query: 362 THSKAEDI 369
++ +I
Sbjct: 75 MLTQRAEI 82
Score = 29.5 bits (65), Expect = 2.5
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
+ AD K K++F + + + D F+ D +++ ++
Sbjct: 17 LRKADKNKDNKMNFKELKDFLKELNIQVD-DGYARKIFRECDHSQTDSL 64
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 31.4 bits (71), Expect = 0.21
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 299 TIAELKKY------LAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV-DAFKAADTTKSGKL 351
T+ E K+ L G ++ S +P+ V+ + AD G++
Sbjct: 28 TVEERAKHDQQFHSLKPISGFITGDQARNFF-FQSG---LPQPVLAQIWALADMNNDGRM 83
Query: 352 SFPDFLKVMH 361
+F M
Sbjct: 84 DQVEFSIAMK 93
Score = 27.5 bits (61), Expect = 4.7
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
F + SG + ++ G L + QI+ A++ + ++ +F
Sbjct: 39 FHSLKP-ISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQVEFS 89
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 30.5 bits (69), Expect = 0.23
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLS 352
++ I KY KG + D K++ T + I K+ D FK D G ++
Sbjct: 9 LNSIIDVYHKYSLIKGNFHAVYRDDLKKLLET-ESPQYIRKKGADVWFKELDINTDGAVN 67
Query: 353 FPDFLKVM 360
F +FL ++
Sbjct: 68 FQEFLILV 75
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 30.5 bits (69), Expect = 0.29
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
+ + +Y KG LS + +++ K + + F+ D +
Sbjct: 11 LEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDE 70
Query: 350 KLSFPDFLKVM 360
++ F +F+ ++
Sbjct: 71 QVDFQEFISLV 81
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 30.7 bits (69), Expect = 0.30
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
+ ++ KY ++G KL+ + +++ D+ +
Sbjct: 21 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 80
Query: 350 KLSFPDFLKVM 360
++ F ++ +
Sbjct: 81 EVDFQEYCVFL 91
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.1 bits (70), Expect = 0.33
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 312 GKLSFPDFLKVM-HTHS----------KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
L + + H H +++ + + D G + + +F K +
Sbjct: 83 NLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142
Score = 29.6 bits (66), Expect = 1.1
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 318 DFLKVMHTHSKAEDIPKEVV-DAFKAADTTKSGKLSFPDFLKVM-HTHS----------K 365
+ L+ + +AE P+E+ FK D + L + + H H
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 366 AEDIPKEVVDAFKAADTTKSGTV 388
+++ + + D G +
Sbjct: 111 EDELINIIDGVLRDDDKNNDGYI 133
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 30.2 bits (68), Expect = 0.34
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
+ ++ KY ++G KL+ + +++ D+ +
Sbjct: 12 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDN 71
Query: 350 KLSFPDFLKVM 360
++ F ++ +
Sbjct: 72 EVDFQEYCVFL 82
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 30.2 bits (68), Expect = 0.37
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
M I +Y +G L+ + +M ++ V K D
Sbjct: 8 MGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDA 67
Query: 350 KLSFPDFLKVM 360
++ F +F+ +
Sbjct: 68 QVDFSEFIVFV 78
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 29.8 bits (67), Expect = 0.50
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 299 TIAELKKY------LAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKL 351
+ KY L+ G LS V+ +SK +P +++ ++ +D G L
Sbjct: 10 KPEDKAKYDAIFDSLSPVNGFLSGDKVKPVL-LNSK---LPVDILGRVWELSDIDHDGML 65
Query: 352 SFPDFLKVMH---THSKAEDIPKEV 373
+F M + E +P +
Sbjct: 66 DRDEFAVAMFLVYCALEKEPVPMSL 90
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 30.6 bits (69), Expect = 0.55
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 22/89 (24%)
Query: 66 LSLSYTPI----GRRIFKCDTVEVLSLKSNS---------LTSLPPDIGRLTNLRVL-C- 110
+ + + I + VE + L L+ L + + ++ C
Sbjct: 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125
Query: 111 -LTDNCLQNASIPFTLTFCKNLTHLYLDN 138
+TD + L +NL +L+L +
Sbjct: 126 NVTDKGII------ALHHFRNLKYLFLSD 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 31.5 bits (70), Expect = 0.58
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 101 GRLTNLRVLCLTDNCLQNASIP--FTLTFCKNLTHLYLDNNLL-----DALPGFLLSMPQ 153
R NL+ L + D QN + L + + +L L + +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 154 LDTVYRHGNH 163
L + N+
Sbjct: 309 LKFINMKYNY 318
Score = 29.2 bits (64), Expect = 2.6
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 79 KCDTVEVLSLKSNSLTSLPP----DIGRLTNLRVLCLTDNCLQNA---SIPFTLTFCKNL 131
+ ++ L + ++ + L L + ++ L + + + K+L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309
Query: 132 THLYLDNNLL 141
+ + N L
Sbjct: 310 KFINMKYNYL 319
Score = 28.0 bits (61), Expect = 7.2
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 80 CDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNASI 121
+E + + + LT L + ++ +L+ + + N L +
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 30.3 bits (69), Expect = 0.68
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 16/70 (22%)
Query: 82 TVEVLSLKSNSLTSLPPDIGRL---------TNLRVLCLTDNCLQNA---SIPFTLTFCK 129
V+ S+ D L+ L + N + + ++ L
Sbjct: 66 YVKKFSIVGTRSN----DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNT 121
Query: 130 NLTHLYLDNN 139
+L L +DN
Sbjct: 122 SLIELRIDNQ 131
Score = 27.3 bits (61), Expect = 8.2
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 26/100 (26%)
Query: 66 LSLSYTPIG----RRIFKC----DTVEVLSLKSNSLTSLPPDIG---------RLTNLRV 108
S+ T + + +T++ L+++SN ++ G T+L
Sbjct: 70 FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS----GSGILALVEALQSNTSLIE 125
Query: 109 LCLTDNCLQ--NA---SIPFTLTFCKNLTHLYLDNNLLDA 143
L + + N I L L
Sbjct: 126 LRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.0 bits (65), Expect = 0.70
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
+ I +Y +G KL + ++++ + + V + D+ G
Sbjct: 8 VVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDG 67
Query: 350 KLSFPDFLKVM 360
+ F +F+ +
Sbjct: 68 ECDFQEFMAFV 78
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 28.6 bits (64), Expect = 1.00
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
+ ++ KY ++G KL+ + +++ D+ +
Sbjct: 9 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 68
Query: 350 KLSFPDFLKVM 360
++ F ++ +
Sbjct: 69 EVDFQEYCVFL 79
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
M I + ++G KLS + ++ T + V K D G
Sbjct: 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDG 67
Query: 350 KLSFPDFLKVM 360
++ F +F+ ++
Sbjct: 68 EVDFQEFVVLV 78
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 28.6 bits (64), Expect = 1.1
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT---HSKAEDIPKEVVDAFKAADTTKSGK 350
+ +A KY +G LS + +++ E+ + D K +
Sbjct: 9 IGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQ-DAEIARLMEDLDRNKDQE 67
Query: 351 LSFPDFLKVM 360
++F +++ +
Sbjct: 68 VNFQEYVTFL 77
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 30.6 bits (68), Expect = 1.2
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 280 TIKTLDELSVIMRSLGMSP-TIAELKKYLAE----KGGKLSFPDFLKVMHTHSKAEDIPK 334
TI ++ + + G+S + E + K G + DF + S ++ +
Sbjct: 703 TINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLI--SMGYNMGE 760
Query: 335 -EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
E D + G ++F F+ M + D +V+ +FK
Sbjct: 761 AEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKI 806
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLS 352
+ + +KY A++G +LS + +++ + +D F+ D G++S
Sbjct: 6 PAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVS 65
Query: 353 FPDFLKVM 360
F +F ++
Sbjct: 66 FEEFQVLV 73
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 28.6 bits (64), Expect = 1.4
Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSG 349
++ + KY +++G KLS + +++H + + + + D
Sbjct: 10 LAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQ 69
Query: 350 KLSFPDFLKVM 360
++ F ++ +
Sbjct: 70 QVDFQEYAVFL 80
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 28.7 bits (64), Expect = 1.4
Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSG 349
++ + ++Y G KL + +++ + E + DT K
Sbjct: 9 VAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDC 68
Query: 350 KLSFPDFLKVM 360
++ F ++++ +
Sbjct: 69 EVDFVEYVRSL 79
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 28.6 bits (64), Expect = 1.4
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 296 MSPTIAELKKYLAEKG---GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKS 348
+ + KY+++ K+S F +++ K + D
Sbjct: 10 VIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHD 69
Query: 349 GKLSFPDFLKVM 360
G++SF ++ ++
Sbjct: 70 GRISFDEYWTLI 81
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 28.2 bits (63), Expect = 1.5
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT--HSKAEDIPKEVVDAFKAADTTKSGKL 351
++ + KY +G LS + +++ + D K+ D ++
Sbjct: 9 LTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMK-ESSIDDLMKSLDKNSDQEI 67
Query: 352 SFPDFLKVM 360
F ++ +
Sbjct: 68 DFKEYSVFL 76
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
{Campylobacter jejuni}
Length = 252
Score = 29.4 bits (66), Expect = 1.9
Identities = 9/99 (9%), Positives = 23/99 (23%), Gaps = 16/99 (16%)
Query: 290 IMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 349
I + KK+ + K +F + S + + + K ++
Sbjct: 106 IASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNA 165
Query: 350 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
L + ++ G+
Sbjct: 166 SL-------------NTSNADPRLLGLLSQ---IPVGSF 188
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.9 bits (62), Expect = 2.2
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
+ IA +K+ G K+S +FL M+T ++ + P + K D G
Sbjct: 12 IESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDG 71
Query: 350 KLSFPDFLKVM 360
+L F +FL ++
Sbjct: 72 QLDFQEFLNLI 82
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 29.5 bits (67), Expect = 2.3
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 317 PDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSG-----KLSFP--DFLKVMHTHSKAED 368
P H + +P E+ + A G LS D M H E+
Sbjct: 511 PQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLD----MRWHCLEEN 566
Query: 369 IPKEVVDAFKAADTTKSGTV 388
+ VD F+
Sbjct: 567 EAMQDVDDFELRALVAENMD 586
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 28.0 bits (62), Expect = 2.6
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDA-FKAADTTKS 348
+ I +Y + G L+ +F +++ K E+ ++V++ + DT
Sbjct: 11 IETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNAD 70
Query: 349 GKLSFPDFLKVM 360
+LSF +F+ +M
Sbjct: 71 KQLSFEEFIMLM 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.8
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 191 LRKQK---KLHQPSRLQDLAVQSVI 212
L+K + KL+ LA+++ +
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATM 46
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.1 bits (60), Expect = 4.1
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 296 MSPTIAELKKYLAEKG--GKLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSG 349
M I Y +G KLS + ++++ ++ P V D+ K
Sbjct: 9 MDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDN 68
Query: 350 KLSFPDFLKVM 360
++ F +F+ ++
Sbjct: 69 EVDFNEFVVLV 79
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.5 bits (64), Expect = 4.8
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 341 KAADTTKSGKLSFPDFLKVMHTHS-KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399
+A S K +P K++ T + D + K + G + K + +
Sbjct: 315 QAVVHLASWKTLYPKAAKMLITKTVSINDEKE----LLKVLREKEHGEI--K----IRIL 364
Query: 400 W 400
W
Sbjct: 365 W 365
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.1 bits (60), Expect = 5.2
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 17/76 (22%)
Query: 296 MSPTIAELKKYLAEKGGKLS-----------FPDFLKVMHTHSKAEDIPKEVVDAFKAAD 344
+ I KY + K+ FP+FL + D F+ D
Sbjct: 9 IIGMIDMFHKY-TRRDDKIDKPSLLTMMKENFPNFLSACDKKG-----TNYLADVFEKKD 62
Query: 345 TTKSGKLSFPDFLKVM 360
+ K+ F +FL ++
Sbjct: 63 KNEDKKIDFSEFLSLL 78
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding
proteins, murein tripeptide, periplasmi protein; HET:
MHI; 2.07A {Escherichia coli}
Length = 519
Score = 28.4 bits (64), Expect = 5.8
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 405 SSKEVDQIFREANVTMNSKVRYEDFVK 431
++ D++ +A+ K R D+
Sbjct: 444 NNPAYDKVLAQASTENTVKARNADYNA 470
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide
transport/peptide), peptide transport; 1.20A {Salmonella
typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A
1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A
1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A
1b7h_A ...
Length = 517
Score = 28.4 bits (64), Expect = 6.2
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 405 SSKEVDQIFREANVTMNSKVRYEDFVK 431
S D++ + + R E + K
Sbjct: 442 KSPAFDKLIADTLKVADDTQRSELYAK 468
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein,
ABC transport system; HET: GOL; 2.10A {Burkholderia
pseudomallei}
Length = 506
Score = 27.9 bits (63), Expect = 6.7
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 405 SSKEVDQIFREANVTMNSKVRYEDFVK 431
+ +VD + EAN ++ R +
Sbjct: 432 CNPKVDSLVAEANQKLDDGARAALLTQ 458
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 27.5 bits (62), Expect = 8.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 299 TIAELKKYLAEKG 311
+ ELK+YL + G
Sbjct: 238 DMRELKEYLKKHG 250
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 9.5
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 300 IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 342
+ EL KL+ P F KA PKEVV+A +A
Sbjct: 809 LKELLALAERSQRKLASPGFR------EKA---PKEVVEAEEA 842
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,682,851
Number of extensions: 395233
Number of successful extensions: 3536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1904
Number of HSP's successfully gapped: 875
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)