BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2949
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Query: 22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
++WPD + + FT ++ + A++ HTCV F+ RT++D+Y+ F GC
Sbjct: 8 RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 66
Query: 82 SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
S VG G G G+ C G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 67 SYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 124
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
E+N + V + G YD+ SIMHY+ FS+ TIVP Y G + +GQR
Sbjct: 125 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 184
Query: 200 MSRVDLAKLNRLYKCP 215
+S+ D+A+ +LYKCP
Sbjct: 185 LSKGDIAQARKLYKCP 200
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDT 273
+N G E+N + V + YD+ SIMHY+ FS+ TIVP Y G +
Sbjct: 119 ENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPP 178
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
+GQR +S+ D+A+ +LYKCP
Sbjct: 179 IGQRTRLSKGDIAQARKLYKCP 200
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Query: 22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
++WPD + + FT ++ + A++ HTCV F+ RT++D+Y+ F GC
Sbjct: 9 RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 67
Query: 82 SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
S VG G G G+ C G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 68 SYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 125
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
E+N + V + G YD+ SIMHY+ FS+ TIVP Y G + +GQR
Sbjct: 126 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 185
Query: 200 MSRVDLAKLNRLYKCP 215
+S+ D+A+ +LYKCP
Sbjct: 186 LSKGDIAQARKLYKCP 201
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDT 273
+N G E+N + V + YD+ SIMHY+ FS+ TIVP Y G +
Sbjct: 120 ENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPP 179
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
+GQR +S+ D+A+ +LYKCP
Sbjct: 180 IGQRTRLSKGDIAQARKLYKCP 201
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
Zebrafish Danio Rerio
Length = 199
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 37 EFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIF 96
EF+I +K+++ NAI TC+RFVPR+ Q YL N GC S +G G +
Sbjct: 29 EFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIENKD-GCYSAIG--RTGGKQVVS 85
Query: 97 LGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRT 156
L + C G QHE+ H+LGF+HE +R DRDQ+VR+ NI PG +N ++ T + T
Sbjct: 86 LNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNISPGMAYNFLKQKTNNQNT 145
Query: 157 FGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
PYDYGS+MHY AF+ +TI P+ P +GQR +S++D+ ++N+LY C
Sbjct: 146 ---PYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQRQGLSKIDILRINKLYGC 199
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQ 276
N G +N ++ + T PYDYGS+MHY AF+ +TI P+ P +GQ
Sbjct: 126 NISPGMAYNFLKQKTNNQNT---PYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQ 181
Query: 277 RDAMSRVDLAKLNRLYKC 294
R +S++D+ ++N+LY C
Sbjct: 182 RQGLSKIDILRINKLYGC 199
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 110/196 (56%), Gaps = 5/196 (2%)
Query: 22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
++WP + Y FT ++ + + A++ HTCV F+ R+++++Y+ F GC
Sbjct: 8 RIWPGGVIPYVI-GGNFTGSQRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTYRPCGCC 66
Query: 82 SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
S VG G G G+ C G + HE+ H +GFWHEHTRPDRD V ++RENI PG
Sbjct: 67 SYVGRR--GNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPG 124
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
E+N + G V + G YD+ SIMHY+ FS+ TI+P G +GQR
Sbjct: 125 QEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTR 184
Query: 200 MSRVDLAKLNRLYKCP 215
+S+ D+A+ +LY+CP
Sbjct: 185 LSKGDIAQARKLYRCP 200
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDT 273
+N G E+N + G V + YD+ SIMHY+ FS+ TI+P G
Sbjct: 119 ENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPA 178
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
+GQR +S+ D+A+ +LY+CP
Sbjct: 179 IGQRTRLSKGDIAQARKLYRCP 200
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 119/228 (52%), Gaps = 9/228 (3%)
Query: 2 EGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRF 61
EGDI + R + RN ++ + WP T+ Y EDS + K ++ NA + R+ TC+ F
Sbjct: 28 EGDIRLDRAQ-IRNSIIGEKYRWP-HTIPYVLEDS-LEMNAKGVILNAFERYRLKTCIDF 84
Query: 62 VPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHE 121
P + Y+ G GC S VG +G ++ +G C +QHE LH+LGFWHE
Sbjct: 85 KPWAGETNYISVFK-GSGCWSSVGNRRVGKQ-ELSIGAN-CDRIATVQHEFLHALGFWHE 141
Query: 122 HTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSK 181
+R DRD +VR++ + I G E N + +PYDY S+MHYS AF ++G
Sbjct: 142 QSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEP 200
Query: 182 TIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPK--NYYQGHEFNLE 227
TIV ED +GQR S DL KLN+LY C ++ F LE
Sbjct: 201 TIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELE 248
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
G E N + ++PYDY S+MHYS AF ++G TIV ED +GQR
Sbjct: 161 GREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVIGQRMDF 219
Query: 281 SRVDLAKLNRLYKCPKN 297
S DL KLN+LY C +
Sbjct: 220 SDSDLLKLNQLYNCSSS 236
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 8/215 (3%)
Query: 15 NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR 74
N ++ + WP T+ Y EDS + K ++ NA + R+ TC+ F P + Y+
Sbjct: 1 NSIIGEKYRWP-HTIPYVLEDS-LEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVF 58
Query: 75 NTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVL 134
G GC S VG +G ++ +G C +QHE LH+LGFWHE +R DRD +VR++
Sbjct: 59 K-GSGCWSSVGNRRVGKQ-ELSIGAN-CDRIATVQHEFLHALGFWHEQSRSDRDDYVRIM 115
Query: 135 RENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTM 194
+ I G E N + +PYDY S+MHYS AF ++G TIV ED +
Sbjct: 116 WDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVI 174
Query: 195 GQRDAMSRVDLAKLNRLYKCPK--NYYQGHEFNLE 227
GQR S DL KLN+LY C ++ F LE
Sbjct: 175 GQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELE 209
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
G E N + ++PYDY S+MHYS AF ++G TIV ED +GQR
Sbjct: 122 GREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVIGQRMDF 180
Query: 281 SRVDLAKLNRLYKCPKN 297
S DL KLN+LY C +
Sbjct: 181 SDSDLLKLNQLYNCSSS 197
>pdb|1AST|A Chain A, Structure Of Astacin And Implications For Activation Of
Astacins And Zinc-Ligation Of Collagenases
pdb|1IAA|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAB|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAC|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison With Thermolysin
pdb|1IAD|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison To Thermolysin
pdb|1IAE|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1QJI|A Chain A, Structure Of Astacin With A Transition-State Analogue
Inhibitor
pdb|1QJJ|A Chain A, Structure Of Astacin With A Hydroxamic Acid Inhibitor
Length = 200
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 101/192 (52%), Gaps = 8/192 (4%)
Query: 23 LWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCAS 82
LW + Y F + + +++ + + +Q+L TC+RFVPRT + Y+ +G GC S
Sbjct: 9 LWSGGVIPYTF--AGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWS 66
Query: 83 PVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGH 142
VG I + L C G I HE++H++GF+HEHTR DRD +V + +N+ P
Sbjct: 67 YVG--RISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDPSM 124
Query: 143 EFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFS-KDGVSKTIVPLYPGAEDTMGQRDA-M 200
N + R G Y Y SIMHY +FS + GV +TIVPL G + T A M
Sbjct: 125 TSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHM 182
Query: 201 SRVDLAKLNRLY 212
+ D ++N LY
Sbjct: 183 LQTDANQINNLY 194
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 241 YDYGSIMHYSGIAFS-KDGVSKTIVPLYPGAEDTMGQRDA-MSRVDLAKLNRLY 292
Y Y SIMHY +FS + GV +TIVPL G + T A M + D ++N LY
Sbjct: 141 YQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLY 194
>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase
Length = 235
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 11/216 (5%)
Query: 2 EGDILIPRERDSRNL---VLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTC 58
EGDI + R + +L LW + Y F + + +++ + + +Q+L TC
Sbjct: 19 EGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTF--AGVSGADQSAILSGMQELEEKTC 76
Query: 59 VRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGF 118
+RFVPRT + Y+ +G GC S VG I + L C G I H ++H++GF
Sbjct: 77 IRFVPRTTESDYVEIFTSGSGCWSYVG--RISGAQQVSLQANGCVYHGTILHALMHAIGF 134
Query: 119 WHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFS-KD 177
+HEHTR DRD +V + +N+ P N + R G Y Y SIMHY +FS +
Sbjct: 135 YHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQW 192
Query: 178 GVSKTIVPLYPGAEDTMGQRDA-MSRVDLAKLNRLY 212
GV +TIVPL G + T A M + D ++N LY
Sbjct: 193 GVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLY 228
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 241 YDYGSIMHYSGIAFS-KDGVSKTIVPLYPGAEDTMGQRDA-MSRVDLAKLNRLY 292
Y Y SIMHY +FS + GV +TIVPL G + T A M + D ++N LY
Sbjct: 175 YQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLY 228
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 235 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 294
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 295 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 323
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 222 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 281
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 282 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 310
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 233 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 292
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 293 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 321
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 235 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 294
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 295 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 323
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 234 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 293
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 294 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 223 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 282
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 283 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 223 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 282
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 283 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 223 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 282
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 283 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 14 RNLVLYQAQLWPDKTVY-YNFEDSEF-----TIYEKTLVENAI------------QDLRM 55
RN V+ +LW K +N +D + ++ L EN ++LR+
Sbjct: 225 RNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRL 284
Query: 56 HTCVRFVPRTNQDTYLRFRNTGFGCASPV 84
V T QD RF+++ FGC PV
Sbjct: 285 KQEYFVVAATLQDIIRRFKSSKFGCRDPV 313
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 90 GTGIDIFLG-GRVCFLKGKIQHEILHSL 116
G G D+ LG G C K+ H ILHSL
Sbjct: 94 GRGADVHLGNGGPCLFMRKVSHVILHSL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,453,942
Number of Sequences: 62578
Number of extensions: 579867
Number of successful extensions: 963
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 37
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)