RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2949
(367 letters)
>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease,
astacin_like subfamily or peptidase family M12A, a group
of zinc-dependent proteolytic enzymes with a HExxH
zinc-binding site/active site. Members of this family
may have an amino terminal propeptide, which is cleaved
to yield the active protease domain, which is
consequently always found at the N-terminus in
multi-domain architectures. This family includes:
astacin, a digestive enzyme from Crayfish; meprin, a
multiple domain membrane component that is constructed
from a homologous alpha and beta chain, proteins
involved in (bone) morphogenesis, tolloid from
drosophila, and the sea urchin SPAN protein, which may
also play a role in development.
Length = 180
Score = 221 bits (565), Expect = 1e-71
Identities = 82/187 (43%), Positives = 121/187 (64%), Gaps = 7/187 (3%)
Query: 26 DKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVG 85
+ TV Y D F +++L+ A++++ +TC+RFVPRT + Y+R G GC S VG
Sbjct: 1 NGTVPYVI-DGSFDESDRSLILRAMREIESNTCIRFVPRTTEKDYIRIVK-GSGCWSYVG 58
Query: 86 YFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFN 145
+G + LG CF G I HE++H+LGF+HE +RPDRD +V + ENI PG+E N
Sbjct: 59 R--VGGRQVVSLG-SGCFSLGTIVHELMHALGFYHEQSRPDRDDYVTINWENIQPGYEHN 115
Query: 146 LERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDL 205
++ +V T+G+PYDYGS+MHY AFSK+G TIVP PG + +GQR+ +S +D+
Sbjct: 116 FDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNG-KPTIVPKDPGYQI-IGQREGLSFLDI 173
Query: 206 AKLNRLY 212
K+N++Y
Sbjct: 174 KKINKMY 180
Score = 91.1 bits (227), Expect = 6e-22
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
G+E N ++ +V T+ +PYDYGS+MHY AFSK+G TIVP PG + +GQR+ +
Sbjct: 111 GYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNG-KPTIVPKDPGYQI-IGQREGL 168
Query: 281 SRVDLAKLNRLY 292
S +D+ K+N++Y
Sbjct: 169 SFLDIKKINKMY 180
>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A). The members
of this family are enzymes that cleave peptides. These
proteases require zinc for catalysis. Members of this
family contain two conserved disulphide bridges, these
are joined 1-4 and 2-3. Members of this family have an
amino terminal propeptide which is cleaved to give the
active protease domain. All other linked domains are
found to the carboxyl terminus of this domain. This
family includes: Astacin, a digestive enzyme from
Crayfish. Meprin, a multiple domain membrane component
that is constructed from a homologous alpha and beta
chain. Proteins involved in morphogenesis such as human
bone morphogenetic protein 1, and Tolloid from
Drosophila melanogaster.
Length = 191
Score = 219 bits (559), Expect = 8e-71
Identities = 87/194 (44%), Positives = 113/194 (58%), Gaps = 4/194 (2%)
Query: 22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
+ WP+ + Y + S FT + L+ A++ TC+RFVPRT D F G GC
Sbjct: 1 RKWPNGPIPYVIDSS-FTGLARALIRQAMRHWEQKTCIRFVPRTAGDNNYLFFFKGDGCY 59
Query: 82 SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
S VG G + LG C G I HE+ H+LGFWHE +RPDRD +V + +NI PG
Sbjct: 60 SYVG--RNGGAQPVSLG-NGCDKFGIIVHELGHALGFWHEQSRPDRDDYVSINWQNIDPG 116
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMS 201
E N E+ V + G+PYDYGSIMHY AFSK+G TIVP + T+GQRD +S
Sbjct: 117 QEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQATIGQRDKLS 176
Query: 202 RVDLAKLNRLYKCP 215
D+ K+N+LYKCP
Sbjct: 177 FGDIEKINKLYKCP 190
Score = 96.9 bits (242), Expect = 6e-24
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
G E N E+ V + +PYDYGSIMHY AFSK+G TIVP + T+GQRD +
Sbjct: 116 GQEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQATIGQRDKL 175
Query: 281 SRVDLAKLNRLYKCP 295
S D+ K+N+LYKCP
Sbjct: 176 SFGDIEKINKLYKCP 190
>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease,
hatching enzyme-like subfamily. Hatching enzymes are
secreted by teleost embryos to digest the egg envelope
or chorion. In some teleosts, the hatching enzyme may be
a system consisting of two evolutionary related
metalloproteases, high choriolytic enzyme and low
choriolytic enzyme (HCE and LCE), which may have
different substrate specificities and cooperatively
digest the chorion.
Length = 182
Score = 176 bits (449), Expect = 2e-54
Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 8/180 (4%)
Query: 35 DSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGID 94
+++ E+ ++E A+Q+ TCVRFVPRT + YL + GC S +G G
Sbjct: 11 SPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIES-RSGCWSYIGR--QGGRQT 67
Query: 95 IFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSV 154
+ L + C KG IQHE+LH+LGF+HE TR DRD++VR+ ENI P +N +++ T ++
Sbjct: 68 VSLQKQGCMYKGIIQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNL 127
Query: 155 RTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
T PYDY S+MHY AFS +G TIVP+ P +GQR MS +D+ ++N+LY C
Sbjct: 128 GT---PYDYSSVMHYGRYAFSING-KPTIVPI-PDPNVPIGQRQGMSNLDILRINKLYNC 182
Score = 74.6 bits (184), Expect = 6e-16
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 240 PYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 294
PYDY S+MHY AFS +G TIVP+ P +GQR MS +D+ ++N+LY C
Sbjct: 130 PYDYSSVMHYGRYAFSING-KPTIVPI-PDPNVPIGQRQGMSNLDILRINKLYNC 182
>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease;
BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic
protein 1) and TLD (tolloid)-like metalloproteases play
vital roles in extracellular matrix formation, by
cleaving precursor proteins such as enzymes, structural
proteins, and proteins involved in the mineralization of
the extracellular matrix. The drosophila protein tolloid
and its Xenopus homologue xolloid cleave and inactivate
Sog and chordin, respectively, which are inhibitors of
Dpp (the Drosophila decapentaplegic gene product) and
its homologue BMP4, involved in dorso-ventral
patterning.
Length = 200
Score = 163 bits (415), Expect = 4e-49
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 7/199 (3%)
Query: 20 QAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFG 79
+ ++WP + Y D FT ++ + + A++ TCV FV RT ++ Y+ F G
Sbjct: 6 KERIWPGGVIPYVI-DGNFTGSQRAMFKQAMRHWENFTCVTFVERTPEENYIVFTYRPCG 64
Query: 80 CASPVGYFPIG-TGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENI 138
C S VG G I I G+ C G + HE+ H +GFWHEHTRPDRD V ++RENI
Sbjct: 65 CCSYVGRRGNGPQAISI---GKNCDKFGIVVHELGHVIGFWHEHTRPDRDDHVTIIRENI 121
Query: 139 GPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLY--PGAEDTMGQ 196
PG E+N + V + G PYD+ SIMHY+ FS+ TI+P G +GQ
Sbjct: 122 QPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQ 181
Query: 197 RDAMSRVDLAKLNRLYKCP 215
R +S D+ + N+LYKCP
Sbjct: 182 RTRLSEGDIIQANKLYKCP 200
Score = 68.6 bits (168), Expect = 1e-13
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLY--PGAEDT 273
+N G E+N + V + PYD+ SIMHY+ FS+ TI+P G
Sbjct: 119 ENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPE 178
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
+GQR +S D+ + N+LYKCP
Sbjct: 179 IGQRTRLSEGDIIQANKLYKCP 200
>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like
subfamily. Meprins are membrane-bound or secreted
extracellular proteases, which cleave a variety of
targets, including peptides such as parathyroid hormone,
gastrin, and cholecystokinin, cytokines such as
osteopontin, and proteins such as collagen IV,
fibronectin, casein and gelatin. Meprins may also be
able to release proteins from the cell surface. Closely
related meprin alpha- and beta-subunits form homo- and
hetero-oligomers; these complexes are found on
epithelial cells of the intestine, for example, and are
also expressed in certain cancer cells.
Length = 230
Score = 148 bits (375), Expect = 1e-42
Identities = 77/213 (36%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 2 EGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRF 61
EGDIL+ + SRN ++ WP + Y +DS + K ++ A + R+ +CV F
Sbjct: 25 EGDILLDEGQ-SRNGLIGDTYRWP-FPIPYILDDS-LDLNAKGVILKAFEMYRLKSCVDF 81
Query: 62 VPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHE 121
P + Y+ F G GC S VG G + I G C K ++HE LH+LGF+HE
Sbjct: 82 KPYEGESNYIFFFK-GSGCWSMVGDQQGGQNLSI---GAGCDYKATVEHEFLHALGFYHE 137
Query: 122 HTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSK 181
+R DRD +V++ + I G E N + PYDY S+MHYS +F+K
Sbjct: 138 QSRSDRDDYVKIWWDQILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEP 197
Query: 182 TIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
TI P D +GQR S +DL +LNR+Y C
Sbjct: 198 TITTKIPEFNDIIGQRLDFSDIDLERLNRMYNC 230
Score = 67.1 bits (164), Expect = 7e-13
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
G E N + + PYDY S+MHYS +F+K TI P D +GQR
Sbjct: 157 GREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDF 216
Query: 281 SRVDLAKLNRLYKC 294
S +DL +LNR+Y C
Sbjct: 217 SDIDLERLNRMYNC 230
>gnl|CDD|214576 smart00235, ZnMc, Zinc-dependent metalloprotease. Neutral zinc
metallopeptidases. This alignment represents a subset of
known subfamilies. Highest similarity occurs in the
HExxH zinc-binding site/ active site.
Length = 139
Score = 117 bits (295), Expect = 4e-32
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGFGC 80
+ WP TV Y + S + E+ + A+ + TC+RFV RT D Y+ F + GC
Sbjct: 3 KKWPKGTVPYVIDSSSLSPEEREAIAKALAEWSDVTCIRFVERTGTADIYISFGSGDSGC 62
Query: 81 ASPVGYFPIG-TGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIG 139
P G + + G C G HE+ H+LG +HE +R DRD ++ + NI
Sbjct: 63 TLSHAGRPGGDQHLSL---GNGCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNID 119
Query: 140 PGHEFNLERRPTGSVRTFGMPYDYGS 165
+ F+L G+PYDYGS
Sbjct: 120 TRN-FDL---SEDDSL--GIPYDYGS 139
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease. This super-family of
metalloproteases contains two major branches, the
astacin-like proteases and the
adamalysin/reprolysin-like proteases. Both branches have
wide phylogenetic distribution, and contain
sub-families, which are involved in vertebrate
development and disease.
Length = 167
Score = 62.5 bits (152), Expect = 9e-12
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 48/191 (25%)
Query: 33 FEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT--NQDTYLRFRNTGFGCASPVGYFP-I 89
E+ + ++L+ A+Q R + +RFV + T G + +
Sbjct: 14 VEEENLSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDFDGGTGGWAYL 73
Query: 90 GTGIDIFLG----GRVCF----LKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
G D G I HE+ H+LGF+H+H R DRD +
Sbjct: 74 GRVCDSLRGVGVLQDNQSGTKEGAQTIAHELGHALGFYHDHDRKDRDDY----------- 122
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMS 201
PT DY S+M Y+ +FS GQR S
Sbjct: 123 --------PTIDDTLNAEDDDYYSVMSYTKGSFS------------------DGQRKDFS 156
Query: 202 RVDLAKLNRLY 212
+ D+ ++N+LY
Sbjct: 157 QCDIDQINKLY 167
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 56.0 bits (135), Expect = 2e-09
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 54/202 (26%)
Query: 27 KTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDT-YLRF-----RNTGFGC 80
K + Y +DS + + +AI+ + F + D +R+ G
Sbjct: 2 KPITYYIDDS-VPDKLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYNDGT 60
Query: 81 ASPVGYFPIGTGIDIFLGGRVC----------FLKGKIQHEILHSLGFWHEHTRPDRDQF 130
S +I L L+ +HE+ H+LG H DRD
Sbjct: 61 WSYGPSQVDPLTGEILLARVYLYSSFVEYSGARLRNTAEHELGHALGLRHNFAASDRDDN 120
Query: 131 VRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGA 190
V +L E D S+M Y+ FS
Sbjct: 121 VDLLAE-----------------------KGDTSSVMDYAPSNFSIQLGD---------- 147
Query: 191 EDTMGQRDAMSRVDLAKLNRLY 212
GQ+ + D+A + +LY
Sbjct: 148 ----GQKYTIGPYDIAAIKKLY 165
Score = 29.8 bits (67), Expect = 1.6
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
H F R +V + D S+M Y+ FS GQ+ +
Sbjct: 109 RHNFAASDR-DDNVDLLAEKGDTSSVMDYAPSNFSIQLGD--------------GQKYTI 153
Query: 281 SRVDLAKLNRLY 292
D+A + +LY
Sbjct: 154 GPYDIAAIKKLY 165
>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like
sub-family 3. A group of bacterial and fungal
metalloproteinase domains similar to matrix
metalloproteinases and astacin.
Length = 198
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 19/77 (24%)
Query: 108 IQHEILHSLGFWHEHTRPD----------RDQFVRV----LRENIGPGHEFNLERRPTGS 153
+ HE H+LGF HEH P F I + + G
Sbjct: 96 VLHEFGHALGFIHEHQSPAANIPWDKEAVYAYFSGPPNWDRETVI---NHNVFAKLDDGD 152
Query: 154 VRTFGMPYDYGSIMHYS 170
V PYD SIMHY
Sbjct: 153 VAY--SPYDPDSIMHYP 167
>gnl|CDD|239806 cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like
sub-family 1. A group of bacterial, archaeal, and fungal
metalloproteinase domains similar to matrix
metalloproteinases and astacin.
Length = 156
Score = 31.7 bits (72), Expect = 0.27
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 110 HEILHSLGFWHEHTRPD 126
HE+ H+LG WH RP+
Sbjct: 110 HELGHALGLWHHSDRPE 126
>gnl|CDD|150203 pfam09450, DUF2019, Domain of unknown function (DUF2019). Protein
of unknown function found in bacteria.
Length = 106
Score = 29.3 bits (66), Expect = 0.99
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 190 AEDTMGQRDAMSRVDLAKLNRLY 212
AE + Q DA+ +++K NRL+
Sbjct: 9 AEIGIAQDDALLGNEISKFNRLF 31
Score = 29.3 bits (66), Expect = 0.99
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 270 AEDTMGQRDAMSRVDLAKLNRLY 292
AE + Q DA+ +++K NRL+
Sbjct: 9 AEIGIAQDDALLGNEISKFNRLF 31
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 5 ILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPR 64
IL+PR + + A E T + + A+ L + +
Sbjct: 96 ILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEK---LVEALLKLLLKPLRLY-EM 151
Query: 65 TNQDTYLRFRN 75
R ++
Sbjct: 152 NKAAKGSRLKD 162
>gnl|CDD|185657 PTZ00479, PTZ00479, RAP Superfamily; Provisional.
Length = 435
Score = 28.2 bits (63), Expect = 7.1
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 19/61 (31%)
Query: 95 IFLGGRVCFLKG--------KIQHEILHSLG------FWHEHTRPDRD-----QFVRVLR 135
F+ G CF K+QH IL +LG W + + D Q+VR LR
Sbjct: 333 WFIDGPSCFYTSTNEYTESVKLQHRILSNLGWNIRRVVWIDWVQLGDDTEAKVQYVRKLR 392
Query: 136 E 136
E
Sbjct: 393 E 393
>gnl|CDD|213736 TIGR02773, addB_Gpos, helicase-exonuclease AddAB, AddB subunit.
DNA repair is accomplished by several different systems
in prokaryotes. Recombinational repair of
double-stranded DNA breaks involves the RecBCD pathway
in some lineages, and AddAB (also called RexAB) in
other. The AddA protein is conserved between the
firmicutes and the alphaproteobacteria, while the
partner protein is not. Nevertheless, the partner is
designated AddB in both systems. This model describes
the AddB protein as found Bacillus subtilis and related
species. Although the RexB protein of Streptococcus and
Lactococcus is considered to be orthologous,
functionally equivalent, and merely named differently,
all members of this protein family have a P-loop
nucleotide binding motif GxxGxGK[ST] at the N-terminus,
unlike RexB proteins, and a CxxCxxxxxC motif at the
C-terminus, both of which may be relevant to function
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1160
Score = 28.2 bits (63), Expect = 9.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 206 AKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSM-PYDYGSIMH 248
++L CP ++ + L+ R + + + D G + H
Sbjct: 789 SRLETYNACPFAHFAQYGLKLKER-----KIYKLEAPDLGQLFH 827
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.443
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,266,157
Number of extensions: 1861741
Number of successful extensions: 1410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1384
Number of HSP's successfully gapped: 29
Length of query: 367
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 269
Effective length of database: 6,590,910
Effective search space: 1772954790
Effective search space used: 1772954790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)