RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2949
(367 letters)
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 243 bits (622), Expect = 7e-80
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 11/219 (5%)
Query: 1 MEGDILIPRERDS---RNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHT 57
EGDI + R +L LW + Y F + + +++ + + +Q+L T
Sbjct: 18 FEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTF--AGVSGADQSAILSGMQELEEKT 75
Query: 58 CVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLG 117
C+RFVPRT + Y+ +G GC S VG I + L C G I H ++H++G
Sbjct: 76 CIRFVPRTTESDYVEIFTSGSGCWSYVGR--ISGAQQVSLQANGCVYHGTILHALMHAIG 133
Query: 118 FWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD 177
F+HEHTR DRD +V + +N+ P N + G Y Y SIMHY +FS
Sbjct: 134 FYHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQ 191
Query: 178 G-VSKTIVPLYPGAEDT-MGQRDAMSRVDLAKLNRLYKC 214
V +TIVPL G + T + M + D ++N LY
Sbjct: 192 WGVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLYTN 230
Score = 89.5 bits (222), Expect = 6e-21
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDG-VSKTIVPLYPGAEDT-M 274
N N + Y Y SIMHY +FS V +TIVPL G + T
Sbjct: 153 NVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDP 210
Query: 275 GQRDAMSRVDLAKLNRLYKC 294
+ M + D ++N LY
Sbjct: 211 YDKAHMLQTDANQINNLYTN 230
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 239 bits (611), Expect = 1e-78
Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Query: 22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
++WPD + + FT ++ + A++ HTCV F+ RT++D+Y+ F GC
Sbjct: 8 RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 66
Query: 82 SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
S VG G I +G C G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 67 SYVGRRG-GGPQAISIGKN-CDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 124
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
E+N + V + G YD+ SIMHY+ FS+ TIVP Y G + +GQR
Sbjct: 125 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 184
Query: 200 MSRVDLAKLNRLYKCP 215
+S+ D+A+ +LYKCP
Sbjct: 185 LSKGDIAQARKLYKCP 200
Score = 99.8 bits (249), Expect = 5e-25
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTM 274
N G E+N + V + YD+ SIMHY+ FS+ TIVP Y G + +
Sbjct: 120 NIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPI 179
Query: 275 GQRDAMSRVDLAKLNRLYKCP 295
GQR +S+ D+A+ +LYKCP
Sbjct: 180 GQRTRLSKGDIAQARKLYKCP 200
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 219 bits (560), Expect = 6e-71
Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 13/197 (6%)
Query: 23 LWPDKT-----VYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTG 77
W V Y EF+I +K+++ NAI TC+RFVPR+ Q YL N
Sbjct: 11 FWKKNANNIVEVPYVV-SGEFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIENKD 69
Query: 78 FGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLREN 137
GC S +G G + L + C G QHE+ H+LGF+HE +R DRDQ+VR+ N
Sbjct: 70 -GCYSAIGR--TGGKQVVSLNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNN 126
Query: 138 IGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQR 197
I PG +N ++ T PYDYGS+MHY AF+ +TI P+ P +GQR
Sbjct: 127 ISPGMAYNFLKQKT---NNQNTPYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQR 182
Query: 198 DAMSRVDLAKLNRLYKC 214
+S++D+ ++N+LY C
Sbjct: 183 QGLSKIDILRINKLYGC 199
Score = 89.8 bits (223), Expect = 2e-21
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQ 276
N G +N ++ + PYDYGS+MHY AF+ +TI P+ P +GQ
Sbjct: 126 NISPGMAYNFLKQ---KTNNQNTPYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQ 181
Query: 277 RDAMSRVDLAKLNRLYKC 294
R +S++D+ ++N+LY C
Sbjct: 182 RQGLSKIDILRINKLYGC 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 42/255 (16%), Positives = 75/255 (29%), Gaps = 77/255 (30%)
Query: 106 GKIQHEIL--HSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDY 163
G ++H +L + F+ ++QF ++L E P F + PT G
Sbjct: 14 GSLEHVLLVPTAS-FFIASQL--QEQFNKILPE---PTEGFAADDEPTTPAELVG----- 62
Query: 164 GSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQG-- 221
+ Y ++ + +GQ D + + L + Y +G
Sbjct: 63 -KFLGY--VSSLVE-------------PSKVGQFDQVLNLCLTEFEN------CYLEGND 100
Query: 222 -HEF---NLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTM--- 274
H L+ V+T + +Y + + F K S L+ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS----ALFRAVGEGNAQL 156
Query: 275 -----GQRDAMSRVD-LAKLNRLYK-----------------------CPKNYYQGFDIQ 305
GQ + + L L + Y K + QG +I
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 306 GFYSTSGPIPDLGYL 320
+ PD YL
Sbjct: 217 EWLENPSNTPDKDYL 231
Score = 38.5 bits (89), Expect = 0.004
Identities = 45/278 (16%), Positives = 77/278 (27%), Gaps = 92/278 (33%)
Query: 1 MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVR 60
+E +L+P +QL +F E D
Sbjct: 16 LEHVLLVPT-----ASFFIASQLQ-----------EQFNKILPEPTEGFAADDE------ 53
Query: 61 FVPRTNQDTYLRFRNTGFGCASPV-----GYFP--IGTGIDIFLGGRVCFLKGK-IQHEI 112
P T + +F G+ +S V G F + + F C+L+G I H +
Sbjct: 54 --PTTPAELVGKF--LGY-VSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDI-HAL 104
Query: 113 LHSLGFWHEHTRPDRDQFVR-------VLRENIGPGHEFNLERR-PTGSVRTF------G 158
L ++ T + ++ + + L R G+ + G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 159 MPYDYGSIMHYSGIAFSKDGVSKTIVPLY----PGAEDTMGQRDAMSRVDLAKLNRL-YK 213
DY F + + LY D + + L++L R
Sbjct: 165 NTDDY----------F------EELRDLYQTYHVLVGDLI---KFSAET-LSELIRTTLD 204
Query: 214 CPKNYYQGHEFNL-------ERRPAG----SVRTFSMP 240
K + QG N+ P S+ S P
Sbjct: 205 AEKVFTQG--LNILEWLENPSNTPDKDYLLSI-PISCP 239
Score = 31.6 bits (71), Expect = 0.52
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 23/64 (35%)
Query: 300 QGFDIQG----FYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKV 355
QG QG Y TS D+ W +R D F +T FS + +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDV--------W---------NR--ADNHFKDTYGFSILDI 1664
Query: 356 GRDN 359
+N
Sbjct: 1665 VINN 1668
Score = 30.4 bits (68), Expect = 1.2
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 6 LIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT 65
LI ++ N+ + VY F+ S+ + ++ E + + + V++ T
Sbjct: 438 LINKDLVKNNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISERIVDCI-IRLPVKW-ETT 493
Query: 66 NQDTY---LRFRNTGFGCASPVGYFPI----GTGIDIFLGG 99
Q L F G G AS +G GTG+ + + G
Sbjct: 494 TQFKATHILDF---GPGGASGLGVLTHRNKDGTGVRVIVAG 531
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 57/208 (27%)
Query: 4 DILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQD--LRMHTC-VR 60
IP +L + +W D + +++ +LVE ++ + + + +
Sbjct: 384 SAHIPTI------LL--SLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 61 FVPRTNQDTYL------------RFRNTGFGCASPVGYFP--IG---TGID--------- 94
+ + L F + YF IG I+
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 95 -IFLGGRVCFLKGKIQHE------------ILHSLGFWHEHTR---PDRDQFVRVLRENI 138
+FL R FL+ KI+H+ L L F+ + P ++ V + + +
Sbjct: 495 MVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 139 GPGHEFNLERRPTGSVRTFGMPYDYGSI 166
P E NL + + + +I
Sbjct: 553 -PKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 44.8 bits (105), Expect = 4e-05
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 36/165 (21%)
Query: 218 YYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKD----GVSKTIVPLYPGAE-- 271
++ H + E T Y Y I+ AF + V + E
Sbjct: 1 HHHHHHMDFE--------TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID 52
Query: 272 DTMGQRDAMSRVDLAKLNRLYKC----PKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWF 327
+ +DA+S RL+ + Q F ++ + +L S
Sbjct: 53 HIIMSKDAVSGTL-----RLFWTLLSKQEEMVQKF-VEEVLR-----INYKFL--MSPIK 99
Query: 328 YKIGGPSDDRKI----MDKFFNNTIHFSKMKVGRDNSYT-YRYAL 367
+ PS ++ D+ +N+ F+K V R Y R AL
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Score = 34.4 bits (78), Expect = 0.069
Identities = 60/437 (13%), Positives = 113/437 (25%), Gaps = 136/437 (31%)
Query: 4 DILIPRERDSRNLVLYQAQLWPDKTVYYNF------EDSEFTIYEKTLVENAIQDL---- 53
I++ ++ S L L+ L + + F + +F + E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRM 111
Query: 54 ------RMHTCV-----RFVPRTNQDTYLRFRN----------------TGFG------- 79
R++ V R YL+ R G G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 80 -CASPVGYFPIGTGIDIFLGGRVCFLK-GKIQ--HEILHSL-GFWHE-----HTRPDRDQ 129
C S + + ++ +L +L L ++ +R D
Sbjct: 170 VCLS--------YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 130 FVRVLRENIGPGHEFNLERRP-------------TGSVRTFGMPYDYGS----IMHYSGI 172
+++ +I L+ +P + F + + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQV 277
Query: 173 AFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAK-LN-RLYKCPKNYYQGHEFNLERRP 230
+ T + L T+ + S L K L+ R P+ + L
Sbjct: 278 TDFLSAATTTHISLDH-HSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 231 AGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNR 290
S+R +D H + D ++ I L L
Sbjct: 335 E-SIRDGLATWDN--WKHV-----NCDKLTTII------------------ESSLNVLE- 367
Query: 291 LYKCPKNYYQGFDIQGFYSTSGPIPD--LGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTI 348
P Y + FD + S IP L + WF I SD +++K
Sbjct: 368 ----PAEYRKMFDRLSVFPPSAHIPTILLSLI-----WFDVI--KSDVMVVVNKLHK--- 413
Query: 349 HFSKMKVGRDNSYTYRY 365
+ + T
Sbjct: 414 --YSLVEKQPKESTISI 428
Score = 33.7 bits (76), Expect = 0.12
Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 57/220 (25%)
Query: 159 MPYDYGSIMHYSGIAFSKD----GVSKTIVPLYPGAE--DTMGQRDAMSRVDLAKLNRLY 212
Y Y I+ AF + V + E + +DA+S RL+
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-----RLF 68
Query: 213 KCPKNYYQGHEFNLERRPAGSVRTF---SMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG 269
L + V+ F + +Y +M S I + S + +Y
Sbjct: 69 WT-----------LLSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSM-MTRMY-- 112
Query: 270 AEDTMGQRDAMSRVD--LAKLN--RLYKCPKNYYQGFDIQ-GFYSTSGPIPDLG-YLPTG 323
+ QRD + + AK N R + Y + ++ P ++ G
Sbjct: 113 ----IEQRDRLYNDNQVFAKYNVSR----LQPYLK---LRQALLELR-PAKNVLIDGVLG 160
Query: 324 SGWFYK---IGGPSDDRKIMDKFFNNTIHFSKMKVGRDNS 360
SG K K+ K I + + + NS
Sbjct: 161 SG---KTWVALDVCLSYKVQCKMDFK-IFW--LNLKNCNS 194
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 32.6 bits (73), Expect = 0.24
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 19/124 (15%)
Query: 24 WPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGFGCAS 82
+ +F + + ++Q + F T N+ + F N +
Sbjct: 83 SVSSIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASG 142
Query: 83 PV-------GYFPIGTGI--DIFLGGRVCFLKGK---------IQHEILHSLGFWHEHTR 124
+ Y+P + ++ HEI H+LG H
Sbjct: 143 NLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEY 202
Query: 125 PDRD 128
+
Sbjct: 203 NAGE 206
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A
Length = 163
Score = 31.5 bits (71), Expect = 0.25
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 50 IQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPI-------GTGIDIFLGGRVC 102
++ L V T +D Y + N FG A G + +++ RV
Sbjct: 59 LRMLPPIKVTLGV--TGKDIYAKGMNFVFGEAELGGARAVLSVFRLTTADSELYR-ERVV 115
Query: 103 FLKGKIQHEILHSLGFWH 120
HEI H LG H
Sbjct: 116 KE---AVHEIGHVLGLKH 130
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 29.7 bits (66), Expect = 1.1
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 65 TNQDTYLRFRNTGFGCASPVGYF------PIGTGIDIFLGGRVCFLKGKIQHEILHSLGF 118
T++D Y N FG A G + RV + HE+ H+ G
Sbjct: 97 TSEDLYAPGLNFVFGQARCPGREAVVSVARLLDPDPELYLERVVKE---LTHELGHTFGL 153
Query: 119 WH 120
H
Sbjct: 154 GH 155
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 29.8 bits (66), Expect = 1.4
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 36 SEFTIYEKTLVENAIQDLRMHTCVRFVPRT---NQDTYLRFRNT-----GFGCASPVGYF 87
S+F+ +K + +++ V F D ++ F N G A
Sbjct: 79 SQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSS 138
Query: 88 PIGTGIDIFLGGRVCFLKGK--------IQHEILHSLGFWHEH 122
G + + HEI H+LG H
Sbjct: 139 RKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPG 181
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 29.0 bits (64), Expect = 1.5
Identities = 22/122 (18%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 24 WPDKTVYY---NFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQ--DTYLRFRNTGF 78
W + Y N+ + + A + T + F + D + F
Sbjct: 10 WSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEH 69
Query: 79 GCASPV----GYFPIGTGIDIFLGGRVCF--------------LKGKIQHEILHSLGFWH 120
G P G GG F L HE HSLG H
Sbjct: 70 GDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDH 129
Query: 121 EH 122
Sbjct: 130 SK 131
>1sat_A Serratia protease; parallel beta helix, parallel beta roll,
hydrolase (serine protease); 1.75A {Serratia marcescens}
SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Length = 471
Score = 29.5 bits (65), Expect = 2.0
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 23/110 (20%)
Query: 36 SEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGFGCASPV-------GYF 87
S+F+ ++ + ++Q + F Q + F N +
Sbjct: 79 SKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFL 138
Query: 88 PIGTGIDIFLGGRVCFLKGK---------------IQHEILHSLGFWHEH 122
P LGG+ + + HEI H+LG H
Sbjct: 139 PNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPG 188
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 27.8 bits (61), Expect = 5.1
Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 15/68 (22%)
Query: 65 TNQDTYLRFRNTGFGCASPVGY------------FPIGTGIDIFLGGRVCFLKGKIQHEI 112
T D Y + FG A P F D L R+ HEI
Sbjct: 95 TPGDLYEPLADFVFGLAYPKLGVAIVSPHRLQNEFYGKYADDSALIDRIVKE---GAHEI 151
Query: 113 LHSLGFWH 120
H G H
Sbjct: 152 GHLFGLGH 159
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 26.6 bits (58), Expect = 8.9
Identities = 25/124 (20%), Positives = 32/124 (25%), Gaps = 23/124 (18%)
Query: 24 WPDKTVYY---NFEDSEFTIYEKTLVENAIQDLRMHTCVRF--VPRTNQDTYLRFRNTGF 78
W + Y N+ +E A Q T + F V D + F
Sbjct: 8 WEQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDH 67
Query: 79 GCASPV----GYFPIGTGIDIFLGGRVCF--------------LKGKIQHEILHSLGFWH 120
SP G +GG F L HE+ HSLG H
Sbjct: 68 RDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSH 127
Query: 121 EHTR 124
Sbjct: 128 STDI 131
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 26.7 bits (58), Expect = 10.0
Identities = 21/120 (17%), Positives = 29/120 (24%), Gaps = 23/120 (19%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRF--VPRTNQDTYLRFRNTGF 78
W + Y + + + A Q T ++F + D + F
Sbjct: 5 WRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAH 64
Query: 79 GCASPVGYFPIGTGIDIFLG----GRVCF--------------LKGKIQHEILHSLGFWH 120
G G G F L HEI HSLG H
Sbjct: 65 GDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGH 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.443
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,927,134
Number of extensions: 362080
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 34
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)