RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2949
(367 letters)
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 173 bits (439), Expect = 2e-53
Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 8/194 (4%)
Query: 23 LWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCAS 82
LW + Y F + + +++ + + +Q+L TC+RFVPRT + Y+ +G GC S
Sbjct: 9 LWSGGVIPYTF--AGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWS 66
Query: 83 PVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGH 142
VG I + L C G I HE++H++GF+HEHTR DRD +V + +N+ P
Sbjct: 67 YVGR--ISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDPSM 124
Query: 143 EFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD-GVSKTIVPLYPGAEDTM-GQRDAM 200
N + R G Y Y SIMHY +FS GV +TIVPL G + T + M
Sbjct: 125 TSNFDIDTY--SRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHM 182
Query: 201 SRVDLAKLNRLYKC 214
+ D ++N LY
Sbjct: 183 LQTDANQINNLYTN 196
Score = 67.9 bits (165), Expect = 5e-14
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 215 PKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKD-GVSKTIVPLYPGAEDT 273
+N N + R Y Y SIMHY +FS GV +TIVPL G + T
Sbjct: 117 YQNVDPSMTSNFDIDT--YSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLT 174
Query: 274 M-GQRDAMSRVDLAKLNRLYKC 294
+ M + D ++N LY
Sbjct: 175 DPYDKAHMLQTDANQINNLYTN 196
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 39.2 bits (90), Expect = 2e-04
Identities = 17/151 (11%), Positives = 31/151 (20%), Gaps = 11/151 (7%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGC 80
W + + ++ + E + A + T +RF
Sbjct: 6 WQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQA--- 62
Query: 81 ASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGP 140
I +G T D + V E++
Sbjct: 63 -----DIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNG 117
Query: 141 GHEFNLERRPTGSVRTFGMPYDYGSIMHYSG 171
F + G D +IM
Sbjct: 118 NDIFLVAVHELGHALGLEHSSDPSAIMAPFY 148
Score = 30.0 bits (66), Expect = 0.31
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSG 251
+ F + G D +IM
Sbjct: 114 DLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY 148
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 32.9 bits (74), Expect = 0.045
Identities = 29/195 (14%), Positives = 49/195 (25%), Gaps = 44/195 (22%)
Query: 22 QLWPDKTVYYNFED-SEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNT--- 76
T S+F+ ++ + ++Q + F Q + F N
Sbjct: 61 DYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD 120
Query: 77 ----GFGCASPVGYFPIGTGIDIFLGGRVC---------------FLKGKIQHEILHSLG 117
+ P LGG+ + + HEI H+LG
Sbjct: 121 RPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALG 180
Query: 118 FWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD 177
H E PT + T+ S+M Y +
Sbjct: 181 LSHPGDYN-------------------AGEGDPTYADVTYAEDTRQFSLMSYWSET-NTG 220
Query: 178 GVSKTIVPLYPGAED 192
G + P +D
Sbjct: 221 GDNGGHYAAAPLLDD 235
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 31.0 bits (69), Expect = 0.13
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 23/125 (18%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRFVPRTN--QDTYLRFRNTGF 78
W + Y + + + + VE A++ T + F D + F
Sbjct: 10 WRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREH 69
Query: 79 GCASPVGYFPIGTGIDIFLGGRV------------------CFLKGKIQHEILHSLGFWH 120
G P G + L HEI HSLG +H
Sbjct: 70 GDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFH 129
Query: 121 EHTRP 125
Sbjct: 130 SANTE 134
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 121
Score = 29.4 bits (66), Expect = 0.25
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 190 AEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSI 246
A+ T+ Q DA+ +++ NRL+ L+ R ++Y ++
Sbjct: 17 AKVTVEQDDALLGNQISRFNRLFGVMAEIADE----LKARDGDQRTALLSLFEYPNM 69
Score = 26.0 bits (57), Expect = 3.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 270 AEDTMGQRDAMSRVDLAKLNRLYK 293
A+ T+ Q DA+ +++ NRL+
Sbjct: 17 AKVTVEQDDALLGNQISRFNRLFG 40
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 246
Score = 30.6 bits (68), Expect = 0.26
Identities = 29/190 (15%), Positives = 50/190 (26%), Gaps = 36/190 (18%)
Query: 19 YQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVP-RTNQDTYLRFRNT- 76
+ +Y + S F+ ++ + ++Q T + FV L F N
Sbjct: 69 FNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFS 128
Query: 77 ----GFGCASPVGYFPIGTGIDIFLG----------GRVCFLKGKIQHEILHSLGFWHEH 122
G A G +L + + + HEI H+LG H
Sbjct: 129 SSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPG 188
Query: 123 TRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKT 182
+ PT + T+ S+M Y +
Sbjct: 189 DYNAGEGD-------------------PTYADATYAEDTRAYSVMSYWEEQNTGQDFK-G 228
Query: 183 IVPLYPGAED 192
P +D
Sbjct: 229 AYSSAPLLDD 238
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 30.2 bits (67), Expect = 0.32
Identities = 27/188 (14%), Positives = 45/188 (23%), Gaps = 40/188 (21%)
Query: 24 WPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT---NQDTYLRFRNT---- 76
F S+F+ +K + +++ V F D ++ F N
Sbjct: 67 GYASRGLGTF--SQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASN 124
Query: 77 -GFGCASPVGYFPIGTGI--------DIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDR 127
G A G G + + + HEI H+LG H
Sbjct: 125 GGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAG 184
Query: 128 DQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHY---SGIAFSKDGVSKTIV 184
+ PT + S+M Y +
Sbjct: 185 NGN-------------------PTYRDAVYAEDTRAYSVMSYWSEKNTGQVFTKTGEGAY 225
Query: 185 PLYPGAED 192
P +D
Sbjct: 226 ASAPLLDD 233
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 29.5 bits (65), Expect = 0.34
Identities = 23/152 (15%), Positives = 33/152 (21%), Gaps = 26/152 (17%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRF--VPRTNQDTYLRFRNTGF 78
W + Y E+ + +E A Q T + F V D + F
Sbjct: 3 WEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDH 62
Query: 79 GCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENI 138
SP F G H RV +
Sbjct: 63 RDNSPFDGPGGNLAHA--------FQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHEL 114
Query: 139 GPGHEFNLERRPTGSVRTFGMPYDYGSIMHYS 170
G D G++M+ S
Sbjct: 115 GHSLGL-------------SHSTDIGALMYPS 133
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.1 bits (64), Expect = 0.51
Identities = 24/123 (19%), Positives = 30/123 (24%), Gaps = 24/123 (19%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRF--VPRTNQDTYLRFRNTGF 78
W K V Y + LV A+ + F V D + F
Sbjct: 10 WTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAH 69
Query: 79 GCASPVGYFPIGTGIDIF----LGGRVCF---------------LKGKIQHEILHSLGFW 119
G + P LGG F HE+ HSLG
Sbjct: 70 GDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMG 129
Query: 120 HEH 122
H
Sbjct: 130 HSS 132
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 28.7 bits (63), Expect = 0.79
Identities = 18/151 (11%), Positives = 29/151 (19%), Gaps = 23/151 (15%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRFVPRTNQDT-YLRFRNTGFG 79
W + Y + A Q T +RF + + +
Sbjct: 5 WDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEH 64
Query: 80 CASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIG 139
G F G + + + V
Sbjct: 65 GDGYPFDGKDGLLAHAFAPG------TGVGGDSHFDDDELWSLGKGVGYSLFLVAA---- 114
Query: 140 PGHEFNLERRPTGSVRTFGMPYDYGSIMHYS 170
HEF G D G++M
Sbjct: 115 --HEF-------GHAMGLEHSQDPGALMAPI 136
>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 146
Score = 28.1 bits (63), Expect = 0.90
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 30 YYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPR 64
+Y +++ F + ++ + + L + + F P+
Sbjct: 104 FYCEKENLFLLQDEHRIRLVVNRLGLDSLAPFKPK 138
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 28.0 bits (61), Expect = 1.2
Identities = 19/127 (14%), Positives = 29/127 (22%), Gaps = 24/127 (18%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRF--VPRTNQDTYLRFRNTGF 78
W + Y ++ + A T + F V + D ++F
Sbjct: 7 WHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEH 66
Query: 79 GCASPVGYFPIGTGIDIFLG----GRVCF---------------LKGKIQHEILHSLGFW 119
G P G G F L H+ H+LG
Sbjct: 67 GDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLD 126
Query: 120 HEHTRPD 126
H
Sbjct: 127 HSSVPEA 133
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 27.6 bits (60), Expect = 1.6
Identities = 20/122 (16%), Positives = 28/122 (22%), Gaps = 23/122 (18%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRFVPRTNQDTYLRF------R 74
W + Y + + + A Q T ++F +
Sbjct: 4 WRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAH 63
Query: 75 NTGFGCASPVGYFPIGTGIDIFLGGRVCF--------------LKGKIQHEILHSLGFWH 120
G G +GG F L HEI HSLG H
Sbjct: 64 GDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGH 123
Query: 121 EH 122
Sbjct: 124 SS 125
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 241
Score = 26.0 bits (56), Expect = 6.3
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 99 GRVCFLKGKIQHEILHSLGFWHEHTRPD 126
G + + HEI H+LG H
Sbjct: 160 GSEEYGRQTFTHEIGHALGLAHPGEYNA 187
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 25.7 bits (55), Expect = 6.9
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 33/132 (25%)
Query: 24 WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRFVP---------RTNQDTYL 71
W K + Y+ ++ + + + + A + T + F + + D +
Sbjct: 4 WQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITI 63
Query: 72 RFRNTGFGCASPVGYFPIGTGIDIF----LGGRVCF-----------------LKGKIQH 110
F + G +SP F +GG F L H
Sbjct: 64 IFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVH 123
Query: 111 EILHSLGFWHEH 122
E+ H+LG H +
Sbjct: 124 ELGHALGLEHSN 135
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga
maritima [TaxId: 2336]}
Length = 147
Score = 25.3 bits (55), Expect = 7.4
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 323 GSGWFYKIGGPSDDRKIMDKFFNNTIHFSKM 353
G IGGP + + + SKM
Sbjct: 92 GKDITILIGGPYGLNEEIFAKAHRVFSLSKM 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.443
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,470,670
Number of extensions: 72146
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 26
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)