BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy295
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 129 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 188
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 189 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 234
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 129 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 188
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 189 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 234
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ QVKALG++ L+DEG+T+WK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETEWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET+ W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 90/106 (84%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
IA G++ +VKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+AT+E
Sbjct: 127 IAYTGQVKEVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATDE 186
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
WF+IYKIPDGKPEN FA +GEAKN+++A +I+ET++ W +LI G+
Sbjct: 187 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHNSWKQLIAGK 232
>pdb|3U28|C Chain C, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|C Chain C, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 114
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 75 VIKMGYFTHTSQXXXXXXXXXXXXPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGD 134
V++MG F H + P+FNAPIYL+NK Q+GK+DEI G L + + ++K GD
Sbjct: 27 VLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGD 86
Query: 135 EVKSKSFKPND 145
V++ SFK D
Sbjct: 87 GVQATSFKEGD 97
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK 278
II+ + +G+ +ID G D+K++A+ V DP D++D+ F L +FK YK
Sbjct: 102 IIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKDISDVPKAF---LDEIAHFFKRYK 158
Query: 279 IPDGKPENVFALNG-EAKNRE 298
+GK V G EA RE
Sbjct: 159 ELEGKEIIVEGWEGAEAAKRE 179
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK 278
II+ + +G++ + D G DWK++A+ V DP D++D+ F L +F+ YK
Sbjct: 85 IIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF---LDEIAHFFQRYK 141
Query: 279 IPDGKPENVFAL-NGEAKNREFAHKV 303
GK + N E RE +
Sbjct: 142 ELQGKTTKIEGWGNAEEAKREILRAI 167
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK 278
II+ + +G++ + D G DWK++A+ V DP D++D+ F L +F+ YK
Sbjct: 85 IIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF---LDEIAHFFQRYK 141
Query: 279 IPDGKPENVFAL-NGEAKNREFAHKV 303
GK + N E RE +
Sbjct: 142 ELQGKTTKIEGWGNAEEAKREILRAI 167
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK 278
II+ + +G+ +ID G D+K++A+ V DP D+ D+ F L +FK YK
Sbjct: 93 IIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKDIDDVPKAF---LDEIAHFFKRYK 149
Query: 279 IPDGKPENVFALNG-EAKNREFAHKV 303
GK V G EA RE +
Sbjct: 150 ELQGKEIIVEGWEGAEAAKREILRAI 175
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK 278
II+ + +G+ D G DWK++A+ V DP D++D+ F L +F+ YK
Sbjct: 85 IIEARPIGIXKXEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF---LDEIAHFFQRYK 141
Query: 279 IPDGKPENVFAL-NGEAKNREFAHKV 303
GK + N E RE +
Sbjct: 142 ELQGKTTKIEGWGNAEEAKREILRAI 167
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
pdb|2BQY|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
Length = 173
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWF 274
G +++ + +GV+ + DE D K+IA+ ++ DP + + D+ D+ H L +F
Sbjct: 81 GSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHT---LDKIKHFF 137
Query: 275 KIYKIPDGKPENVFALNGEAKNREFAHKVIEET 307
+ YK D +P + G +N+E A KV+E+
Sbjct: 138 ETYK--DLEPNKWVKVKG-FENKESAIKVLEKA 167
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
Length = 173
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWF 274
G +++ + +GV+ DE D K+IA+ ++ DP + + D+ D+ H L +F
Sbjct: 81 GSVVKARLVGVLNXEDESGXDEKLIALPIDKIDPTHSYVKDIDDLSKHT---LDKIKHFF 137
Query: 275 KIYKIPDGKPENVFALNGEAKNREFAHKVIEET 307
+ YK D +P + G +N+E A KV+E+
Sbjct: 138 ETYK--DLEPNKWVKVKG-FENKESAIKVLEKA 167
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3EIY|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound Pyrophosphate
pdb|3EIZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei, H32 Crystal Form
pdb|3EJ0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound
N-(Pyridin-3-Ylmethyl) Aniline, H32 Crystal Form
pdb|3EJ2|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound 5-Amino-1-(4-
Chlorophenyl)-1h-Pyrazole-4-Carbonitrile, H32 Crystal
Form
pdb|3GVF|A Chain A, 1.7 Angstrom Crystal Structure Of Inorganic
Pyrophosphatase From Burkholderia Pseudomallei Bound
With Phosphate
Length = 196
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVND--PNAAKLNDVADIETHFPGYLK-ATNEW 273
G +++ +ALG++ + DE D K++A+ + P A L + D+ P YLK +
Sbjct: 104 GSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDV----PAYLKDQIKHF 159
Query: 274 FKIYK-IPDGKPENVFALNG-EAKNREFAHKV 303
F+ YK + GK V +G +A ++E V
Sbjct: 160 FEQYKALEKGKWVKVEGWDGIDAAHKEITDGV 191
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAI--NVNDPNAAKLNDVADI 259
G +I+V+ +G++ + DE D KI+A+ + DP+ + + D+ D+
Sbjct: 79 GSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDL 123
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0
Length = 171
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGY-LKATNEWFK 275
G ++ + +G+ ++DE D K++ + DP + D+ D+ P + L A +F
Sbjct: 78 GVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDV----PAFELDAIKHFFV 133
Query: 276 IYK 278
YK
Sbjct: 134 HYK 136
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0
Length = 172
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGY-LKATNEWFK 275
G ++ + +G+ ++DE D K++ + DP + D+ D+ P + L A +F
Sbjct: 79 GVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDV----PAFELDAIKHFFV 134
Query: 276 IYK 278
YK
Sbjct: 135 HYK 137
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|B Chain B, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|C Chain C, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
Length = 169
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGY-LKATNEWFK 275
G ++ + +G+ ++DE D K++ + DP + D+ D+ P + L A +F
Sbjct: 76 GVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDV----PAFELDAIKHFFV 131
Query: 276 IYK 278
YK
Sbjct: 132 HYK 134
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKI 276
G +++ + +G+ ++DE D K++ + VND ++ + D+ T L A +F
Sbjct: 74 GVLVEARPVGMFRMVDEHGGDDKVLCVPVNDHRWDHIHGIIDVPTF---ELDAIKHFFVH 130
Query: 277 YK 278
YK
Sbjct: 131 YK 132
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPN-AAKLNDVADIETHFPG-YLKATNEWF 274
G +I V +G + + D+G D KIIAI P + N++ D T P LK +F
Sbjct: 87 GCVINVYPIGALIMEDDGGKDEKIIAIPT--PKLTQRYNNIHDY-TDLPEITLKQIEHFF 143
Query: 275 KIYKIPDGKPENVFALNGEAKNREFAHKVIEET 307
+ YK D +P + G +++ FAH++I++
Sbjct: 144 EHYK--DLEPGKWAKIEG-WRDKSFAHELIKQA 173
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWF 274
G +I+ + +GV+ + DE D KI+A+ + D + D +D F L + + +F
Sbjct: 104 GAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYNNIKDYSDFPVSF---LNSISHFF 160
Query: 275 KIYK 278
YK
Sbjct: 161 TFYK 164
>pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic
Switching Between Two Dna Bound States
Length = 579
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 227 VIGLIDEGQTDWKII---AINVNDPNAAKLNDVADI------ETHFPGYLKATNEWFKIY 277
++G D G W + A +D A+L + D+ + P +LK ++ +
Sbjct: 458 LMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDF 517
Query: 278 KIPDGKPENVFALNGEAKNREFAH 301
+PD K V+ + G ++ AH
Sbjct: 518 IVPDPKKAAVWEITGAEFSKSEAH 541
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAI 243
G +I+ +A+GV+ + DE D KIIA+
Sbjct: 83 GSVIKCRAIGVLMMEDESGLDEKIIAV 109
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|B Chain B, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|C Chain C, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|D Chain D, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|E Chain E, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|F Chain F, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
Length = 178
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAA--KLNDVADIETHFPGYLKATNEWF 274
G + +V+ALG+ DE D K++A+ V A + + DI + L A + +F
Sbjct: 84 GVLXRVRALGIXKXEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLL---LDAISHFF 140
Query: 275 KIYKIPDGKPENVFALNG----EAKNREFAHKVI 304
+ YK D +P + G EA +EF ++
Sbjct: 141 ERYK--DLEPNKWAKVKGWEDKEAAKKEFEASIV 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,555,792
Number of Sequences: 62578
Number of extensions: 317079
Number of successful extensions: 943
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 48
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)