Query psy295
Match_columns 326
No_of_seqs 304 out of 1147
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:42:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02707 Soluble inorganic pyr 100.0 9.3E-59 2E-63 436.7 19.2 181 143-325 69-265 (267)
2 PLN02373 soluble inorganic pyr 100.0 1.1E-57 2.4E-62 411.2 16.7 174 129-319 8-186 (188)
3 PRK00642 inorganic pyrophospha 100.0 1.4E-56 3E-61 408.9 18.1 164 142-315 21-204 (205)
4 PRK01250 inorganic pyrophospha 100.0 4.7E-56 1E-60 397.2 16.7 160 137-313 7-175 (176)
5 PRK02230 inorganic pyrophospha 100.0 7.1E-55 1.5E-59 391.7 16.6 155 144-314 3-162 (184)
6 cd00412 pyrophosphatase Inorga 100.0 2.4E-54 5.2E-59 379.5 14.9 148 145-309 2-155 (155)
7 PF00719 Pyrophosphatase: Inor 100.0 4E-54 8.6E-59 378.3 13.6 150 147-313 1-156 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 2.1E-51 4.5E-56 365.8 14.4 153 144-313 13-171 (171)
9 KOG1626|consensus 100.0 4.9E-48 1.1E-52 359.4 14.8 165 149-319 57-235 (279)
10 KOG3262|consensus 100.0 5.6E-33 1.2E-37 248.9 3.2 91 71-171 49-139 (215)
11 PRK13149 H/ACA RNA-protein com 99.9 1E-23 2.2E-28 164.5 7.6 70 75-148 1-71 (73)
12 COG3277 GAR1 RNA-binding prote 99.8 1.2E-18 2.5E-23 143.2 6.9 75 75-149 1-75 (98)
13 PF04410 Gar1: Gar1/Naf1 RNA b 99.7 1.7E-18 3.6E-23 151.8 6.5 82 71-152 19-103 (154)
14 KOG2236|consensus 97.9 6.6E-06 1.4E-10 83.4 2.8 78 71-148 204-284 (483)
15 PF05239 PRC: PRC-barrel domai 82.6 1.6 3.5E-05 33.0 3.4 34 101-134 10-46 (79)
16 KOG3262|consensus 70.8 1.6 3.4E-05 40.6 0.4 18 16-34 44-61 (215)
17 TIGR02273 16S_RimM 16S rRNA pr 47.3 33 0.00071 30.2 4.6 33 100-132 100-132 (165)
18 COG4766 EutQ Ethanolamine util 36.1 21 0.00046 32.5 1.6 31 128-163 129-159 (176)
19 PF00076 RRM_1: RNA recognitio 35.0 63 0.0014 22.7 3.7 42 266-308 11-60 (70)
20 PF06249 EutQ: Ethanolamine ut 31.2 36 0.00078 30.5 2.2 21 140-163 116-136 (152)
21 PRK14592 rimM 16S rRNA-process 27.6 80 0.0017 28.0 3.8 33 100-132 97-129 (165)
22 PF01176 eIF-1a: Translation i 27.3 1.2E+02 0.0025 22.9 4.2 47 108-158 1-58 (65)
23 PF10309 DUF2414: Protein of u 27.1 57 0.0012 25.1 2.4 45 250-305 7-60 (62)
24 PRK00122 rimM 16S rRNA-process 26.9 84 0.0018 27.9 3.8 32 100-131 105-136 (172)
25 COG0806 RimM RimM protein, req 26.3 1E+02 0.0022 28.1 4.3 32 101-132 107-138 (174)
26 PRK13828 rimM 16S rRNA-process 26.2 95 0.0021 27.4 4.0 33 100-132 85-117 (161)
27 PRK13829 rimM 16S rRNA-process 25.7 1.2E+02 0.0025 26.9 4.5 35 100-135 94-128 (162)
28 PRK09521 exosome complex RNA-b 25.6 4E+02 0.0087 23.9 8.0 79 127-227 49-132 (189)
29 cd05694 S1_Rrp5_repeat_hs2_sc2 25.2 46 0.001 25.6 1.6 27 187-227 31-57 (74)
30 PRK12442 translation initiatio 25.0 1.6E+02 0.0034 24.3 4.7 50 111-163 8-58 (87)
31 PF07177 Neuralized: Neuralize 24.5 69 0.0015 24.7 2.5 23 204-226 29-51 (69)
32 TIGR03021 pilP_fam type IV pil 21.0 1.1E+02 0.0024 26.1 3.3 35 113-148 68-102 (119)
33 COG3881 PRC-barrel domain cont 20.6 1.9E+02 0.0041 26.6 4.7 77 49-131 32-111 (176)
34 cd01460 vWA_midasin VWA_Midasi 20.3 39 0.00085 32.6 0.4 28 247-277 236-263 (266)
35 TIGR00008 infA translation ini 20.3 2.3E+02 0.005 22.2 4.6 50 111-163 6-56 (68)
No 1
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=9.3e-59 Score=436.72 Aligned_cols=181 Identities=36% Similarity=0.578 Sum_probs=169.7
Q ss_pred CCCccceEEecCCCceeeeEE------EEEEeccc-ccccccccCCCcccccccccCCCCC---------CCCCCCcceE
Q psy295 143 PNDLIPVLLVFKFKCVMYLLR------LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDD---------LVLKVTLDDV 206 (326)
Q Consensus 143 ~GDkI~vIEIp~gs~vKyE~d------~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD---------~~gDGDPLDV 206 (326)
++..++|||||+||++|||+| .|++||.+ ..++| .+ .+|+|||||||||+++ +.||||||||
T Consensus 69 ~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~y-P~-~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDV 146 (267)
T PLN02707 69 DGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDY-PY-NINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDV 146 (267)
T ss_pred CCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEEC-CC-cCccccccccccccCcccccccccccCCCCCccEE
Confidence 688999999999999999998 69999999 77666 22 3455999999999864 3579999999
Q ss_pred EEeccccccceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCCCcc
Q psy295 207 LVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 286 (326)
Q Consensus 207 lVl~~~p~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK~vn 286 (326)
|||++.++.|||+++|||||+|+|+|+||+|||||||+++||+|++|+|++||++++|+++++|+|||++||.+|||++|
T Consensus 147 lvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n 226 (267)
T PLN02707 147 VEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPAN 226 (267)
T ss_pred EEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccCHHHHHHHHHHHHHHHHHhhcCccCCCCCC
Q psy295 287 VFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGVA 325 (326)
Q Consensus 287 ~f~~~~g~~~~e~A~~vI~~a~~~y~~l~~~~~~~~~~~ 325 (326)
+|+++++|.|+++|+++|++||++|++++.++++.++++
T Consensus 227 ~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~~~~~~~~ 265 (267)
T PLN02707 227 KFGLDNKPMDKDYALKVIEETNEAWAKLVKRSIPAGELS 265 (267)
T ss_pred eccccCCcCCHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 999999999999999999999999999999999988876
No 2
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=1.1e-57 Score=411.22 Aligned_cols=174 Identities=22% Similarity=0.271 Sum_probs=160.1
Q ss_pred EEEeCCcccccccCCCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCc
Q psy295 129 SVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTL 203 (326)
Q Consensus 129 sVK~~~gmkAsSFk~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDP 203 (326)
.+-+..++.+..-.++..++|||||+||++|||+| .|++||++ ++++| |+||||||+||++| |||
T Consensus 8 ~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~y------P~nYGfIP~T~~~D----gDP 77 (188)
T PLN02373 8 AAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVY------PHNYGFIPRTLCED----NDP 77 (188)
T ss_pred cCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcC------CcccccccccccCC----CCc
Confidence 33344455554456788999999999999999999 99999999 99999 99999999999988 999
Q ss_pred ceEEEeccccccceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCC
Q psy295 204 DDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 283 (326)
Q Consensus 204 LDVlVl~~~p~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK 283 (326)
||||||++.|++|||+++|||||+|+|+|+||.|||||||+++||+|++|+|++||++ +++++|+|||++||.+|||
T Consensus 78 LDvlvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~---~~l~~I~~fF~~YK~legK 154 (188)
T PLN02373 78 LDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPP---HRLAEIRRFFEDYKKNENK 154 (188)
T ss_pred cEEEEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCH---HHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999985 5999999999999999999
Q ss_pred CcceecccCcccCHHHHHHHHHHHHHHHHHhhcCcc
Q psy295 284 PENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEV 319 (326)
Q Consensus 284 ~vn~f~~~~g~~~~e~A~~vI~~a~~~y~~l~~~~~ 319 (326)
++ .+++|.|+++|+++|++||++|++++..+.
T Consensus 155 ~v----~v~g~~~~~~A~~~I~~~~~~y~~~~~~~~ 186 (188)
T PLN02373 155 EV----AVNDFLPAEAAIEAIQYSMDLYAEYIVESL 186 (188)
T ss_pred eE----EeCCccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98 567999999999999999999999877654
No 3
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.4e-56 Score=408.91 Aligned_cols=164 Identities=22% Similarity=0.277 Sum_probs=152.6
Q ss_pred CCCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCC--------------CCCCC
Q psy295 142 KPNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDL--------------VLKVT 202 (326)
Q Consensus 142 k~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~--------------~gDGD 202 (326)
.++..++|||||+||++|||+| .+++||+| ++++| |+|||||||||++.. .||||
T Consensus 21 ~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~y------P~nYGfIPqT~~dp~~~~~~~~~~~~~~~~gDgD 94 (205)
T PRK00642 21 APESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFC------PALYGFIPRTYCGDLSGKLSGEQSGREDIKGDGD 94 (205)
T ss_pred CCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcC------CcccCcCcccccCcccccccccccccccCCCCCC
Confidence 3678899999999999999999 99999999 99999 999999999998632 37899
Q ss_pred cceEEEeccccccceeE-EEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCC
Q psy295 203 LDDVLVFCFQIAKRGEI-IQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD 281 (326)
Q Consensus 203 PLDVlVl~~~p~~pG~v-v~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le 281 (326)
|||||||++.|++|||+ ++|||||+|+|+|+||+|||||||+++||+|++|+|++||++ +++++|+|||++||.++
T Consensus 95 PLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~---~~l~~I~~fF~~YK~le 171 (205)
T PRK00642 95 PLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPG---TLLDRLQHYFLTYKATP 171 (205)
T ss_pred ceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCH---HHHHHHHHHHHHHcCcc
Confidence 99999999999999985 799999999999999999999999999999999999999995 59999999999999999
Q ss_pred CCCcceecccCcccCHHHHHHHHHHHHHHHHHhh
Q psy295 282 GKPENVFALNGEAKNREFAHKVIEETNHQWSKLI 315 (326)
Q Consensus 282 GK~vn~f~~~~g~~~~e~A~~vI~~a~~~y~~l~ 315 (326)
||+.|.++ .++|.++++|+++|++||++|++++
T Consensus 172 gk~~k~~~-~~g~~~~~~A~~vI~~~~~~y~~~~ 204 (205)
T PRK00642 172 GELIKGVE-IVGIYGKEEAQKVIQLAHEDYANKF 204 (205)
T ss_pred cCCCCeEE-ECCCcCHHHHHHHHHHHHHHHHHhh
Confidence 88777664 5789999999999999999999875
No 4
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=4.7e-56 Score=397.22 Aligned_cols=160 Identities=23% Similarity=0.244 Sum_probs=149.9
Q ss_pred cccccCCCCccceEEecCCCc-eeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEec
Q psy295 137 KSKSFKPNDLIPVLLVFKFKC-VMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFC 210 (326)
Q Consensus 137 kAsSFk~GDkI~vIEIp~gs~-vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~ 210 (326)
.+..-.++..++|||||+||+ +|||+| .|+|||++ ++++| |+|||||||||++| |||||||||+
T Consensus 7 ~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~y------P~nYGfIP~T~~~D----gDPLDvlvl~ 76 (176)
T PRK01250 7 PAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFY------PCNYGFIPHTLSLD----GDPVDVLVVT 76 (176)
T ss_pred CCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcC------CcCcccCCCcccCC----CCceEEEEec
Confidence 333456788889999999999 799999 89999999 99999 99999999999988 9999999999
Q ss_pred cccccceeEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcce
Q psy295 211 FQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENV 287 (326)
Q Consensus 211 ~~p~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~ 287 (326)
+.+++|||+++|||||+|+|+|+||.|||||||+++ ||+|++|+|++||++ +++++|+|||++||.++ ||++
T Consensus 77 ~~~~~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~---~~l~eI~~fF~~YK~le~gk~~-- 151 (176)
T PRK01250 77 PYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPE---LLKAQIKHFFEHYKDLEKGKWV-- 151 (176)
T ss_pred CCCCCCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCH---HHHHHHHHHHHHhcCCCCCCCE--
Confidence 999999999999999999999999999999999998 799999999999995 59999999999999998 8987
Q ss_pred ecccCcccCHHHHHHHHHHHHHHHHH
Q psy295 288 FALNGEAKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 288 f~~~~g~~~~e~A~~vI~~a~~~y~~ 313 (326)
.+++|.|+++|+++|++||++|++
T Consensus 152 --~v~g~~~~~~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 152 --KVEGWGGAEEAKAEIVEAIERAKK 175 (176)
T ss_pred --EecCccCHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999975
No 5
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=7.1e-55 Score=391.66 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=148.0
Q ss_pred CCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEecccccccee
Q psy295 144 NDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGE 218 (326)
Q Consensus 144 GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG~ 218 (326)
+..++|||||+||++|||+| .+++||+| +++.| |+||||||+||++| |||||||||++.|+.|||
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----GDPLDvlvl~~~~~~pG~ 72 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVY------PANYGFIKEALDWD----GDELDVLVYSDQKFLPGT 72 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCC------CcCcccCCCccCCC----CCceEEEEECCCCCCCcc
Confidence 45789999999999999999 99999999 99999 99999999999988 999999999999999999
Q ss_pred EEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCCCcceecccCcccCHH
Q psy295 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNRE 298 (326)
Q Consensus 219 vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK~vn~f~~~~g~~~~e 298 (326)
+++|||||+|+|+|+||.|||||||+++||+|++|++++|||++ ++++|+|||++||.+|||+++. +++|.|++
T Consensus 73 vi~~r~IGvl~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~---~l~~I~~fF~~YK~legk~~~~---v~g~~~~~ 146 (184)
T PRK02230 73 VLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQH---WLDEIEYFFSNYKNWKRKGITK---VKGFEDEK 146 (184)
T ss_pred EEEEEEEEEEEeccCCCcCcEEEEEECCCCChhhcCChHHCCHH---HHHHHHHHHHHhcCCCCCCeEE---eCCccCHH
Confidence 99999999999999999999999999999999999999999975 9999999999999999988754 46899999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy295 299 FAHKVIEETNHQWSKL 314 (326)
Q Consensus 299 ~A~~vI~~a~~~y~~l 314 (326)
+|+++|++|+++|+++
T Consensus 147 ~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 147 WALKEYKECVELMKKY 162 (184)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999987
No 6
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=2.4e-54 Score=379.47 Aligned_cols=148 Identities=32% Similarity=0.442 Sum_probs=140.0
Q ss_pred CccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccceeE
Q psy295 145 DLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEI 219 (326)
Q Consensus 145 DkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG~v 219 (326)
..++|||||+||++|||+| .+++||++ ++++| |+||||||+||++| |||||||||++.|++|||+
T Consensus 2 ~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~y------P~nYGfiP~T~~~D----gDPlDvlvl~~~~~~~G~~ 71 (155)
T cd00412 2 VVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGY------PWNYGFIPQTLEDD----GDPLDVLVIGEEPLFPGSV 71 (155)
T ss_pred EEEEEEEECCCCceeEEEccCCCceeeccccccCCcC------cccccccCCcccCC----CCceEEEEEcCCCCCCeeE
Confidence 4578999999999999999 99999999 88999 99999999999998 9999999999999999999
Q ss_pred EEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCC-CCcceecccCcccCHH
Q psy295 220 IQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG-KPENVFALNGEAKNRE 298 (326)
Q Consensus 220 v~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leG-K~vn~f~~~~g~~~~e 298 (326)
++|||||+|+|+|+||.|||||||+.+||+|++|+|++||++ +++++|+|||++||.+|| |++ .+.+|.|++
T Consensus 72 ~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~---~~l~~I~~fF~~YK~le~~k~~----~~~g~~~~~ 144 (155)
T cd00412 72 IRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVPP---HLLDEIKHFFEHYKDLEGKKEV----KVAGWKDKE 144 (155)
T ss_pred EEEEEEEEEEeccCCCccceEEEeeCCCcccccCCChHHCCH---HHHHHHHHHHHHhcccCCCCce----EECcCcCHH
Confidence 999999999999999999999999999999999999999994 599999999999999997 555 345999999
Q ss_pred HHHHHHHHHHH
Q psy295 299 FAHKVIEETNH 309 (326)
Q Consensus 299 ~A~~vI~~a~~ 309 (326)
+|+++|++||+
T Consensus 145 ~A~~~I~~~~~ 155 (155)
T cd00412 145 EALKIIKESIE 155 (155)
T ss_pred HHHHHHHHHhC
Confidence 99999999984
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=4e-54 Score=378.29 Aligned_cols=150 Identities=29% Similarity=0.382 Sum_probs=137.7
Q ss_pred cceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccceeEEE
Q psy295 147 IPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQ 221 (326)
Q Consensus 147 I~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG~vv~ 221 (326)
++|||||+||++|||+| ++.+||.+ +++.| |+||||||+||++| |||||||||++.|+.|||+++
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~y------P~NYGfIP~T~~~D----GDPLDvlvl~~~~~~~G~v~~ 70 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPY------PFNYGFIPQTLGGD----GDPLDVLVLGSEPLPPGSVVR 70 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-------SSEEEEETTEEBTT----SSCEEEEEESSS---TTEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCC------ccccccccceecCC----CCeeeEEEEecccccceeEEE
Confidence 57999999999999999 99999999 88888 99999999999988 999999999999999999999
Q ss_pred EEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCC-CCCCcceecccCcccCHHHH
Q psy295 222 VKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIP-DGKPENVFALNGEAKNREFA 300 (326)
Q Consensus 222 vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~l-eGK~vn~f~~~~g~~~~e~A 300 (326)
|||||+|+|+|+||+|||||||+.+||+|++|++++|++ |+.+++|+|||++||.+ ++|++ .+++|.++++|
T Consensus 71 ~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~dl~dl~---~~~~~~i~~fF~~YK~l~~~k~~----~~~~~~~~~~A 143 (156)
T PF00719_consen 71 VRVIGVLKMIDDGERDDKIIAVPVDDPRYDDIKDLEDLP---PHLLDEIEHFFRNYKDLEENKWV----EVGGWEDAEEA 143 (156)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEETTCGGGTTHHSGGGSS---HHHHHHHHHHHHHTTTTSTTEEE----EEEEEEEHHHH
T ss_pred EeceEEEEEeeCCCCceEEEEeccCCcccCCcCcHHHhC---hhHHHHHHHHHHHhcCcCCCCeE----EeCCCcCHHHH
Confidence 999999999999999999999999999999999999998 45999999999999999 67877 77899999999
Q ss_pred HHHHHHHHHHHHH
Q psy295 301 HKVIEETNHQWSK 313 (326)
Q Consensus 301 ~~vI~~a~~~y~~ 313 (326)
+++|++||++|++
T Consensus 144 ~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 144 LKVIKEAHERYKK 156 (156)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999985
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=2.1e-51 Score=365.79 Aligned_cols=153 Identities=27% Similarity=0.378 Sum_probs=147.5
Q ss_pred CCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEecccccccee
Q psy295 144 NDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGE 218 (326)
Q Consensus 144 GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG~ 218 (326)
.+..++||||+||++|||+| .+.+||++ ++|.| |+||||||+||++| ||||||||++++|+.|||
T Consensus 13 ~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~Y------P~NYGfiP~Tl~~D----GDPlDvlVi~~~p~~pG~ 82 (171)
T COG0221 13 EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGY------PVNYGFIPNTLSDD----GDPLDVLVIGEEPLAPGC 82 (171)
T ss_pred ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcC------CccccccCCcccCC----CCceEEEEEcCcCCCcee
Confidence 37788999999999999999 89999999 99999 99999999999999 999999999999999999
Q ss_pred EEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccCcccCH
Q psy295 219 IIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNGEAKNR 297 (326)
Q Consensus 219 vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~g~~~~ 297 (326)
+++|||||+|+|+|+||.|||||||+..||+|++|++++|+++| ++++|+|||++||.+| ||++ +++||+|+
T Consensus 83 vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~---~~~~i~~ffe~yK~le~~k~~----~~~gw~~~ 155 (171)
T COG0221 83 VIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEH---LLDEIQHFFETYKDLEKGKWV----KVEGWEDA 155 (171)
T ss_pred EEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHH---HHHHHHHHHHHHHhcCCCcEE----EeccccCH
Confidence 99999999999999999999999999999999999999999987 9999999999999999 5888 67899999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy295 298 EFAHKVIEETNHQWSK 313 (326)
Q Consensus 298 e~A~~vI~~a~~~y~~ 313 (326)
++|+++|++|+++|++
T Consensus 156 ~~A~~~i~~~~~~~k~ 171 (171)
T COG0221 156 EEAKKEIKEAIERYKE 171 (171)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999974
No 9
>KOG1626|consensus
Probab=100.00 E-value=4.9e-48 Score=359.41 Aligned_cols=165 Identities=41% Similarity=0.618 Sum_probs=153.1
Q ss_pred eEEec-CCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCC--------CCCCCcceEEEeccccc
Q psy295 149 VLLVF-KFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDL--------VLKVTLDDVLVFCFQIA 214 (326)
Q Consensus 149 vIEIp-~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~--------~gDGDPLDVlVl~~~p~ 214 (326)
.+||. +++.++|+.| .++++|.+ .+..| |.|||||||||++.. .|||||||||+||+++.
T Consensus 57 k~EIs~k~~~~pikqD~KkGklR~v~n~fp~~gY------iwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~ 130 (279)
T KOG1626|consen 57 KMEISKKEPFNPIKQDKKKGKLRFVRNLFPYKGY------IWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPV 130 (279)
T ss_pred EEEEeccCCCCcceeeccCCceEEEEeccccccc------ccccccCcccccCCCcccccccccCCCCcceeeEeccccc
Confidence 44555 5556677777 89999999 55557 999999999999832 38999999999999999
Q ss_pred cceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCCCcceecccCcc
Q psy295 215 KRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEA 294 (326)
Q Consensus 215 ~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK~vn~f~~~~g~ 294 (326)
.+||+++||+||+|+||||||+|||||||.++||.++.++|++|+.+++||+|++|++|||.||.++||+.|.|++++++
T Consensus 131 ~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnDP~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f 210 (279)
T KOG1626|consen 131 LPGCVLQVKVLGLMALIDEGETDWKIIAIDVNDPLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDF 210 (279)
T ss_pred ccccEEEEEeeeeeecccCCCccceEEEEECCCcchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhhcCcc
Q psy295 295 KNREFAHKVIEETNHQWSKLIKGEV 319 (326)
Q Consensus 295 ~~~e~A~~vI~~a~~~y~~l~~~~~ 319 (326)
.+++.|.++|++||+.|++++.+++
T Consensus 211 ~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 211 LNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred cChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987
No 10
>KOG3262|consensus
Probab=99.97 E-value=5.6e-33 Score=248.89 Aligned_cols=91 Identities=46% Similarity=0.736 Sum_probs=83.0
Q ss_pred CCceeEEeeeeEeeecCeEEEEecCCCCCCcCCceeecccccceeeeeeccCccceEEEEEeCCcccccccCCCCccceE
Q psy295 71 FSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVL 150 (326)
Q Consensus 71 ~~~~v~~lG~f~H~~e~~lV~k~~~~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~vI 150 (326)
+|++|+|||+|+|.||++||||+++.+|||||||||||||+|||||||||||+|++||||||+++|+|+|||++||+.+
T Consensus 49 pp~evvelg~flh~Cegd~Vck~~~~kIPyfNAPIylenk~qIGKVDEIfG~i~d~~fsIK~~dgv~assfk~g~k~fi- 127 (215)
T KOG3262|consen 49 PPEEVVELGKFLHMCEGDLVCKLTNKKIPYFNAPIYLENKEQIGKVDEIFGPINDVHFSIKPSDGVQASSFKPGDKLFI- 127 (215)
T ss_pred CchhhhhhhhhhhhcCCceEEeeccccCCCCCCceeecchhhhcchhhhcccccccEEEEecCCCceeecccCCCeEEe-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999643
Q ss_pred EecCCCceeeeEEEEEEeccc
Q psy295 151 LVFKFKCVMYLLRLFILKYML 171 (326)
Q Consensus 151 EIp~gs~vKyE~d~~~vDR~l 171 (326)
-+.+ +|-+||+|
T Consensus 128 --~p~K-------llPl~RFL 139 (215)
T KOG3262|consen 128 --DPDK-------LLPLDRFL 139 (215)
T ss_pred --cccc-------cCcHhhcC
Confidence 1221 55667777
No 11
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=99.89 E-value=1e-23 Score=164.51 Aligned_cols=70 Identities=23% Similarity=0.464 Sum_probs=65.9
Q ss_pred eEEeeeeEeee-cCeEEEEecCCCCCCcCCceeecccccceeeeeeccCccceEEEEEeCCcccccccCCCCccc
Q psy295 75 VIKMGYFTHTS-QDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIP 148 (326)
Q Consensus 75 v~~lG~f~H~~-e~~lV~k~~~~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~ 148 (326)
+.++|+|+|.| +++||||+ .++|+|||+||++|+++||||+|||||++++||+||++++..++ +.||++-
T Consensus 1 Mk~~G~~~h~~~~g~lI~~~--~~~P~~n~~V~~~~~~~IGkV~dIfGPV~~pY~~Vk~~~~~~~~--~~g~k~y 71 (73)
T PRK13149 1 MKRLGKVLHYAPKGKLIIRL--DKQPPIGSVVYDKKLKKIGKVVDVFGPVKEPYVLVKPDKKDPPE--LVGEKLY 71 (73)
T ss_pred CcEeEEEEEEcCCCCEEEEc--CCCCCCCCEeECCCCCEeEEEEEEECCCCCcEEEEEeCCCCCcc--ccCCEEE
Confidence 46899999999 79999999 58999999999999999999999999999999999999999997 8898854
No 12
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.2e-18 Score=143.21 Aligned_cols=75 Identities=27% Similarity=0.456 Sum_probs=70.1
Q ss_pred eEEeeeeEeeecCeEEEEecCCCCCCcCCceeecccccceeeeeeccCccceEEEEEeCCcccccccCCCCccce
Q psy295 75 VIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPV 149 (326)
Q Consensus 75 v~~lG~f~H~~e~~lV~k~~~~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~v 149 (326)
+.+||+++|.|+..+||..++..+|++||+||++|.++||+|+|||||++++|++||++++.+.++...||.+-+
T Consensus 1 m~~lG~vlh~~~~g~vi~~~~~~iP~l~~~V~~~~~k~IG~V~dVfGPv~~PY~~Vkp~~~~~~~~~~vg~~lYi 75 (98)
T COG3277 1 MKRLGKVLHVCGTGMVIVRDNDRIPPLNAPVYDANLKRIGKVVDVFGPVDEPYILVKPDDRDVKLESLVGDTLYI 75 (98)
T ss_pred CccceeEEEecCCceEEEeCCCCCCCCCCeeEecCCCEEEEEEEEEccCCCCEEEEeccccccccccccceEEEe
Confidence 468999999999999999988899999999999999999999999999999999999999999888899988554
No 13
>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.
Probab=99.74 E-value=1.7e-18 Score=151.83 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=74.7
Q ss_pred CCceeEEeeeeEeeecCeEEEEecCC-CCCCcCCceeecccccceeeeeeccCccceEEEEE--eCCcccccccCCCCcc
Q psy295 71 FSLQVIKMGYFTHTSQDDLVLKVTLD-DVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVK--VGDEVKSKSFKPNDLI 147 (326)
Q Consensus 71 ~~~~v~~lG~f~H~~e~~lV~k~~~~-~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK--~~~gmkAsSFk~GDkI 147 (326)
++.++++||+++|.|++.+||+++.. .+|.+|+.||++|+++||||+|||||++++|++|| +.+++.+.+++.|+++
T Consensus 19 ~~~~i~~lG~v~~i~~~~vVvk~~~~~~vl~~~s~v~~edr~~iG~V~eiFGpV~~P~y~Vr~~~~~~~~~~~~~~g~~v 98 (154)
T PF04410_consen 19 PPEEIKPLGTVSHIVENLVVVKSTPSKQVLDFGSVVCLEDRTKIGKVDEIFGPVNNPYYSVRFNSSEGIKAKSLKVGDKV 98 (154)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEE-SS-CEEBTT-EEEETTSBEEEEEEEEESESSS-EEEEE-SCHHHHHHHCCCTTSEE
T ss_pred CCceEEEeeeEEEEeCCcEEEEeCCCCcCCCCCCEEECCCCCEeEEEeeEeCCCCceEEEEEeCCccccccccccccceE
Confidence 88999999999999999999999877 79999999999999999999999999999999999 8899999999999998
Q ss_pred ceEEe
Q psy295 148 PVLLV 152 (326)
Q Consensus 148 ~vIEI 152 (326)
-+..=
T Consensus 99 y~~~~ 103 (154)
T PF04410_consen 99 YYDPD 103 (154)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 76643
No 14
>KOG2236|consensus
Probab=97.89 E-value=6.6e-06 Score=83.43 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=67.4
Q ss_pred CCceeEEeeeeEeeecCeEEEEecCCCCC-CcCCceeecccccceeeeeeccCccceEEEEEeCCccccc--ccCCCCcc
Q psy295 71 FSLQVIKMGYFTHTSQDDLVLKVTLDDVP-FFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSK--SFKPNDLI 147 (326)
Q Consensus 71 ~~~~v~~lG~f~H~~e~~lV~k~~~~~vP-~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAs--SFk~GDkI 147 (326)
...++++||.++.+.+..+|++++..+.| -+.+.+++++.+-||+|+|||||+.++|.-|+....-.++ .++-|++.
T Consensus 204 e~~~~~plG~V~svv~~~VII~s~~~~~vlde~Svlf~edR~~lG~I~EiFGpV~~P~YvvRFnS~~e~~~~gi~ig~~v 283 (483)
T KOG2236|consen 204 EKGELLPLGKVSSVVDQQVIIESTCNKEVLDEDSVLFLEDRTALGQIFEIFGPVKNPYYVVRFNSEEEISFLGICIGEKV 283 (483)
T ss_pred CCcceechhHHHHHhhhceEEEeccCcccccccceEEeeccccchhhhhhhcccCCceEEEecCchhhhhhhccccCCee
Confidence 44689999999999999999999988755 4999999999999999999999999999999988776554 55666664
Q ss_pred c
Q psy295 148 P 148 (326)
Q Consensus 148 ~ 148 (326)
-
T Consensus 284 y 284 (483)
T KOG2236|consen 284 Y 284 (483)
T ss_pred E
Confidence 4
No 15
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=82.57 E-value=1.6 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=26.2
Q ss_pred cCCceeecccccceeeeee-ccCccce--EEEEEeCC
Q psy295 101 FNAPIYLQNKQQIGKIDEI-FGSLKDY--YVSVKVGD 134 (326)
Q Consensus 101 fNa~Vy~enk~~IGkVdEI-fGPin~~--yfsVK~~~ 134 (326)
.+.+||+++..++|+|.|| |-+-+.- ++.|+...
T Consensus 10 ~g~~V~~~~G~~iG~V~di~id~~~~~i~~i~v~~~~ 46 (79)
T PF05239_consen 10 IGKEVIDRDGEKIGKVKDIVIDPKTGKIVGIVVSSGG 46 (79)
T ss_dssp TTSEEEETTSCEEEEEEEEEEETTTTEEEEEEEEETT
T ss_pred cCCEEEcCCCCEEEEEEEEEEeCCCCCEEEEEEcCCC
Confidence 5789999999999999999 8884443 45555443
No 16
>KOG3262|consensus
Probab=70.83 E-value=1.6 Score=40.59 Aligned_cols=18 Identities=50% Similarity=0.896 Sum_probs=14.7
Q ss_pred cccCCCCCcceeEEeeccc
Q psy295 16 FQDQGPPDQEVEVVADFKI 34 (326)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (326)
+||||||++-| .|+.|.|
T Consensus 44 ~~d~gpp~evv-elg~flh 61 (215)
T KOG3262|consen 44 FQDQGPPEEVV-ELGKFLH 61 (215)
T ss_pred cccCCCchhhh-hhhhhhh
Confidence 78999999854 4688888
No 17
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=47.31 E-value=33 Score=30.23 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=30.1
Q ss_pred CcCCceeecccccceeeeeeccCccceEEEEEe
Q psy295 100 FFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKV 132 (326)
Q Consensus 100 ~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~ 132 (326)
..+..|++++...+|+|.||+-.-.+..+.|+.
T Consensus 100 LiG~~V~d~~~~~lG~V~~v~~~~a~dll~V~~ 132 (165)
T TIGR02273 100 LIGLEVVTEEGEELGKVVEILETGANDVLVVRS 132 (165)
T ss_pred hCCcEEEcCCCcEEEEEEEEecCCCccEEEEEE
Confidence 467899999999999999999999999999996
No 18
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=36.14 E-value=21 Score=32.47 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEEeCCcccccccCCCCccceEEecCCCceeeeEE
Q psy295 128 VSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLR 163 (326)
Q Consensus 128 fsVK~~~gmkAsSFk~GDkI~vIEIp~gs~vKyE~d 163 (326)
.+|..+.+- . .-++||. |=||+||.+++-..
T Consensus 129 L~V~~~g~t-v-~a~aGDv---ifiPKgssIefst~ 159 (176)
T COG4766 129 LHVRIDGRT-V-IAGAGDV---IFIPKGSSIEFSTT 159 (176)
T ss_pred EEEEEcCCe-E-ecCCCcE---EEecCCCeEEEecc
Confidence 344444441 1 3467886 78999998887665
No 19
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=35.03 E-value=63 Score=22.67 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=30.2
Q ss_pred hHHHHHHHHhHccCCC--------CCCcceecccCcccCHHHHHHHHHHHH
Q psy295 266 YLKATNEWFKIYKIPD--------GKPENVFALNGEAKNREFAHKVIEETN 308 (326)
Q Consensus 266 ~l~~I~~FF~~YK~le--------GK~vn~f~~~~g~~~~e~A~~vI~~a~ 308 (326)
..++|+++|..|-... .+....++++ .+.+.++|.+++++.+
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V-~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFV-EFESEEDAEKALEELN 60 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEE-EESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhhcccccccccccccccceEEE-EEcCHHHHHHHHHHcC
Confidence 5678999999987762 2333445554 7899999999887654
No 20
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=31.22 E-value=36 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=14.9
Q ss_pred ccCCCCccceEEecCCCceeeeEE
Q psy295 140 SFKPNDLIPVLLVFKFKCVMYLLR 163 (326)
Q Consensus 140 SFk~GDkI~vIEIp~gs~vKyE~d 163 (326)
.-++||. |-||+||++.|.-.
T Consensus 116 ~A~~GDv---i~iPkGs~I~fst~ 136 (152)
T PF06249_consen 116 TAKPGDV---IFIPKGSTITFSTP 136 (152)
T ss_dssp EEETT-E---EEE-TT-EEEEEEE
T ss_pred EEcCCcE---EEECCCCEEEEecC
Confidence 6678887 88999999999875
No 21
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=27.62 E-value=80 Score=27.95 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=28.9
Q ss_pred CcCCceeecccccceeeeeeccCccceEEEEEe
Q psy295 100 FFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKV 132 (326)
Q Consensus 100 ~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~ 132 (326)
..+..|++++...+|+|.||+=.-.+-.+.|+.
T Consensus 97 LiG~~V~~~~g~~lG~V~~v~~~ga~dvlvI~~ 129 (165)
T PRK14592 97 LIGMEVKLEDNTIYGYIKKIYNFGSCDIIEISL 129 (165)
T ss_pred cCCcEEEcCCCCEEEEEEEEccCCCccEEEEEE
Confidence 457889999999999999999988888888884
No 22
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=27.29 E-value=1.2e+02 Score=22.90 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=29.0
Q ss_pred cccccceeeeeeccCccceEEEEEeCCccccc-----------ccCCCCccceEEecCCCce
Q psy295 108 QNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSK-----------SFKPNDLIPVLLVFKFKCV 158 (326)
Q Consensus 108 enk~~IGkVdEIfGPin~~yfsVK~~~gmkAs-----------SFk~GDkI~vIEIp~gs~v 158 (326)
|+.+.+|+|-+.+|. -+|.|++.+|.... -+++||.+ ++|+...+.+
T Consensus 1 ee~e~~~~V~~~lG~---~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V-~V~~~~~d~~ 58 (65)
T PF01176_consen 1 EEGEVIGRVTEMLGN---NLFEVECEDGEERLARIPGKFRKRIWIKRGDFV-LVEPSPYDKV 58 (65)
T ss_dssp STTEEEEEEEEEESS---SEEEEEETTSEEEEEEE-HHHHTCC---TTEEE-EEEESTTCTT
T ss_pred CCcEEEEEEEEECCC---CEEEEEeCCCCEEEEEeccceeeeEecCCCCEE-EEEecccCCC
Confidence 356778888888884 56888888876443 34566653 5666555433
No 23
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=27.08 E-value=57 Score=25.06 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=30.8
Q ss_pred cCCCCCcccccccCcchHHHHHHHHhHccCCC---------CCCcceecccCcccCHHHHHHHHH
Q psy295 250 AAKLNDVADIETHFPGYLKATNEWFKIYKIPD---------GKPENVFALNGEAKNREFAHKVIE 305 (326)
Q Consensus 250 ~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le---------GK~vn~f~~~~g~~~~e~A~~vI~ 305 (326)
.-+|+-+++|. -+.|+.||..|-..+ ....|+. |.+.+.|.+.+.
T Consensus 7 avhirGvd~ls------T~dI~~y~~~y~~~~~~~~IEWIdDtScNvv-----f~d~~~A~~AL~ 60 (62)
T PF10309_consen 7 AVHIRGVDELS------TDDIKAYFSEYFDEEGPFRIEWIDDTSCNVV-----FKDEETAARALV 60 (62)
T ss_pred eEEEEcCCCCC------HHHHHHHHHHhcccCCCceEEEecCCcEEEE-----ECCHHHHHHHHH
Confidence 34677778874 679999999993222 2334443 888888887664
No 24
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=26.92 E-value=84 Score=27.87 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=28.9
Q ss_pred CcCCceeecccccceeeeeeccCccceEEEEE
Q psy295 100 FFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVK 131 (326)
Q Consensus 100 ~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK 131 (326)
..+..|++++...+|+|.+|+=.-.+..+.||
T Consensus 105 LiG~~V~d~~g~~lG~V~~v~~~~a~dll~I~ 136 (172)
T PRK00122 105 LIGLEVVDEDGEELGKVTDILETGANDVLVVL 136 (172)
T ss_pred hCCcEEEeCCCcEEEEEEEEccCCCceEEEEE
Confidence 46789999999999999999998888889997
No 25
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=26.27 E-value=1e+02 Score=28.12 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=29.3
Q ss_pred cCCceeecccccceeeeeeccCccceEEEEEe
Q psy295 101 FNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKV 132 (326)
Q Consensus 101 fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~ 132 (326)
....||+++.+.+|||.||+=+-++-.+.||.
T Consensus 107 iG~~V~~~~g~~lG~V~~i~~~Ga~Dvl~V~~ 138 (174)
T COG0806 107 IGLEVVTEDGELLGKVTEILETGANDVLVVKA 138 (174)
T ss_pred cCcEEEcCCCcEEEEEEEEeeCCCccEEEEEe
Confidence 56789999999999999999999999999996
No 26
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=26.21 E-value=95 Score=27.43 Aligned_cols=33 Identities=3% Similarity=0.054 Sum_probs=28.1
Q ss_pred CcCCceeecccccceeeeeeccCccceEEEEEe
Q psy295 100 FFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKV 132 (326)
Q Consensus 100 ~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~ 132 (326)
..+..|++++...+|+|.+|+-.-.+-.+.|+.
T Consensus 85 LiG~~V~d~~g~~lG~V~~V~~~ga~dvlvV~~ 117 (161)
T PRK13828 85 LIGLAAVDTGGALLGRVKAVHNFGAGDILEIAP 117 (161)
T ss_pred ccCCEEEeCCCCEEEEEEEEccCCCccEEEEEE
Confidence 467789999999999999999977777778884
No 27
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=25.66 E-value=1.2e+02 Score=26.93 Aligned_cols=35 Identities=9% Similarity=0.244 Sum_probs=28.0
Q ss_pred CcCCceeecccccceeeeeeccCccceEEEEEeCCc
Q psy295 100 FFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDE 135 (326)
Q Consensus 100 ~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~g 135 (326)
.....|+ ++...+|+|.+|+=.-.+-.+.|+..++
T Consensus 94 LiG~~V~-~~g~~lG~V~~v~~~ga~dvlvV~~~~~ 128 (162)
T PRK13829 94 LRGLPVY-VDGEPLGEVVDVEDAGAQDLLVIRHVGG 128 (162)
T ss_pred ccCeEEE-ECCEeeEEEEEEecCCCceEEEEEeCCC
Confidence 3567888 8999999999999877777778985443
No 28
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=25.57 E-value=4e+02 Score=23.91 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=44.7
Q ss_pred EEEEEeCCcccccccCCCCccc--eEEecCCCceeeeEEEEEE---ecccccccccccCCCcccccccccCCCCCCCCCC
Q psy295 127 YVSVKVGDEVKSKSFKPNDLIP--VLLVFKFKCVMYLLRLFIL---KYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKV 201 (326)
Q Consensus 127 yfsVK~~~gmkAsSFk~GDkI~--vIEIp~gs~vKyE~d~~~v---DR~l~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDG 201 (326)
.++|++..+. ....+.||.+. |++|.. ..+.++...+ ++.+. +.--||++.+...+ .
T Consensus 49 ~Isv~P~~~~-~~~~~~GdiV~GkV~~i~~---~g~~V~I~~~~~~~~~l~----------~~~~G~l~~s~i~~----~ 110 (189)
T PRK09521 49 KISVIPFKKT-PPLLKKGDIVYGRVVDVKE---QRALVRIVSIEGSERELA----------TSKLAYIHISQVSD----G 110 (189)
T ss_pred EEEEecCcCC-CCCCCCCCEEEEEEEEEcC---CeEEEEEEEecccccccC----------CCceeeEEhhHcCh----h
Confidence 4566666553 34667888765 556633 3444442222 22221 22348898886544 2
Q ss_pred CcceEEEeccccccceeEEEEEEEEE
Q psy295 202 TLDDVLVFCFQIAKRGEIIQVKALGV 227 (326)
Q Consensus 202 DPLDVlVl~~~p~~pG~vv~vR~IGv 227 (326)
+.-+ ....+.+|+++.||++.+
T Consensus 111 ~~~~----~~~~~~~GD~V~akV~~i 132 (189)
T PRK09521 111 YVES----LTDAFKIGDIVRAKVISY 132 (189)
T ss_pred hhhh----HHhccCCCCEEEEEEEec
Confidence 2212 233468899999999977
No 29
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=25.21 E-value=46 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=21.7
Q ss_pred cccccCCCCCCCCCCCcceEEEeccccccceeEEEEEEEEE
Q psy295 187 GYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGV 227 (326)
Q Consensus 187 GFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG~vv~vR~IGv 227 (326)
||+|.+...+ . ..+.+|+.+.|+++.+
T Consensus 31 Gfl~~~~~~~----~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 31 GFLPKKDAGN----F----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEHHHCCc----c----------cccCCCCEEEEEEEEE
Confidence 8999887765 2 5678999999999854
No 30
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=24.98 E-value=1.6e+02 Score=24.32 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=36.1
Q ss_pred ccceeeeeeccCccceEEEEEeCCcccccccCCCCccc-eEEecCCCceeeeEE
Q psy295 111 QQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIP-VLLVFKFKCVMYLLR 163 (326)
Q Consensus 111 ~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~-vIEIp~gs~vKyE~d 163 (326)
+.-|+|.|+++ +-.|-|+++.|......-+|..-- -|=|-.|+.|+-|+-
T Consensus 8 e~~G~V~e~Lp---~~~frV~LenG~~vla~isGKmR~~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 8 ELDGIVDEVLP---DSRFRVTLENGVEVGAYASGRMRKHRIRILAGDRVTLELS 58 (87)
T ss_pred EEEEEEEEECC---CCEEEEEeCCCCEEEEEeccceeeeeEEecCCCEEEEEEC
Confidence 34589999988 458999999888776666665544 566667776666664
No 31
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=24.48 E-value=69 Score=24.71 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=16.3
Q ss_pred ceEEEeccccccceeEEEEEEEE
Q psy295 204 DDVLVFCFQIAKRGEIIQVKALG 226 (326)
Q Consensus 204 LDVlVl~~~p~~pG~vv~vR~IG 226 (326)
=..||+++.|+.+|+.+++|+.=
T Consensus 29 ~~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 29 NNGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp SS-EEEESS-B-TT-EEEEEEEE
T ss_pred CceEEEecCCccCCCEEEEEEEe
Confidence 35799999999999999999843
No 32
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=20.99 E-value=1.1e+02 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=30.4
Q ss_pred ceeeeeeccCccceEEEEEeCCcccccccCCCCccc
Q psy295 113 IGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIP 148 (326)
Q Consensus 113 IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~ 148 (326)
.=.|-+|||.-++....+.+..| ....+++||.++
T Consensus 68 ~P~v~~I~G~~~~l~A~l~l~~G-~~~~v~~G~~lp 102 (119)
T TIGR03021 68 LPRVVEIFGRGGRLTATLRLPGG-REVDVQVGDSLP 102 (119)
T ss_pred CCEEEEEEccCCCeEEEEEeCCC-cEEEecCCCccC
Confidence 44689999999999999999998 556899999865
No 33
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=20.59 E-value=1.9e+02 Score=26.62 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=43.4
Q ss_pred hhhhhhhhhhhhhhhhhccCCcCCceeEEeeeeEeeecCeEEEEec-CCCCCCcCCceeecccccce--eeeeeccCccc
Q psy295 49 QMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVT-LDDVPFFNAPIYLQNKQQIG--KIDEIFGSLKD 125 (326)
Q Consensus 49 ~~~~~~~~~~~~~~~~~r~~~~~~~~v~~lG~f~H~~e~~lV~k~~-~~~vP~fNa~Vy~enk~~IG--kVdEIfGPin~ 125 (326)
|-.+++|++.-|+ +..-....+.++.....-++.++.... ....|.+|+..|-.-+-+.= .=-+|+|=+.+
T Consensus 32 ~gdrvl~flvnkg------gwfh~h~~lp~~~i~Sig~k~Imi~vp~~~~~~~~ns~~ye~m~mk~~lt~dG~iLGmveD 105 (176)
T COG3881 32 SGDRVLGFLVNKG------GWFHKHCCLPVKNIVSIGSKMIMIYVPYKGSFIRFNSFTYEIMNMKVILTYDGTILGMVED 105 (176)
T ss_pred CCCeEEEEEEecC------cEEeeeeeeeecceeeeccceEEEeccccceecccCchhhHhhcCceEeccCCcEeeeeeE
Confidence 4567788555444 444445666666666555555555443 24588999955532222111 11246777778
Q ss_pred eEEEEE
Q psy295 126 YYVSVK 131 (326)
Q Consensus 126 ~yfsVK 131 (326)
+||--|
T Consensus 106 VyFdek 111 (176)
T COG3881 106 VYFDEK 111 (176)
T ss_pred EEEecc
Confidence 999766
No 34
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=20.31 E-value=39 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=22.9
Q ss_pred CCCcCCCCCcccccccCcchHHHHHHHHhHc
Q psy295 247 DPNAAKLNDVADIETHFPGYLKATNEWFKIY 277 (326)
Q Consensus 247 DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~Y 277 (326)
-|.|--++|+++||.. +-+.+++||+.-
T Consensus 236 fpYy~~~~~~~~lp~~---l~~~lrqwf~~~ 263 (266)
T cd01460 236 FPYYVIVRDLNQLPSV---LSDALRQWFELV 263 (266)
T ss_pred CCeEEEecChhHhHHH---HHHHHHHHHHHH
Confidence 4788889999999876 667779999864
No 35
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=20.28 E-value=2.3e+02 Score=22.19 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=35.2
Q ss_pred ccceeeeeeccCccceEEEEEeCCcccccccCCCCccc-eEEecCCCceeeeEE
Q psy295 111 QQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIP-VLLVFKFKCVMYLLR 163 (326)
Q Consensus 111 ~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~-vIEIp~gs~vKyE~d 163 (326)
+..|+|.|.+| +-+|.|++.+|...-..=+|..-- -|=|-.|+.++-|+.
T Consensus 6 e~~G~V~e~L~---~~~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 6 EMEGKVTESLP---NAMFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVELS 56 (68)
T ss_pred EEEEEEEEECC---CCEEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEEC
Confidence 34688999988 468999999998777666665542 556666665555554
Done!