Query psy295
Match_columns 326
No_of_seqs 304 out of 1147
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:42:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 1.2E-59 4E-64 419.9 13.4 162 140-318 11-177 (178)
2 3gvf_A Inorganic pyrophosphata 100.0 1.2E-57 4.1E-62 411.7 16.8 157 140-313 31-196 (196)
3 3fq3_A Inorganic pyrophosphata 100.0 2.5E-57 8.4E-62 410.0 17.8 155 142-313 33-196 (197)
4 1qez_A Ppase, S-ppase, protein 100.0 2.4E-57 8.3E-62 403.4 17.0 155 142-313 9-171 (173)
5 3tr4_A Inorganic pyrophosphata 100.0 2.3E-57 7.9E-62 405.0 16.7 153 144-313 15-176 (178)
6 2prd_A Pyrophosphate phosphohy 100.0 3.1E-57 1.1E-61 403.0 16.6 155 142-313 12-174 (174)
7 1sxv_A Inorganic pyrophosphata 100.0 9.7E-58 3.3E-62 405.4 13.0 152 145-313 12-169 (172)
8 1e9g_A Ppase, inorganic pyroph 100.0 2.6E-57 9.1E-62 429.4 15.7 177 143-325 40-241 (286)
9 2au7_A Inorganic pyrophosphata 100.0 5.7E-57 2E-61 401.5 16.9 155 142-313 11-174 (175)
10 3ld3_A Inorganic pyrophosphata 100.0 5.1E-57 1.8E-61 408.5 15.9 155 142-313 33-196 (199)
11 2bqx_A Inorganic pyrophosphata 100.0 1.3E-56 4.4E-61 398.7 14.7 154 143-313 12-173 (173)
12 3d53_A Inorganic pyrophosphata 100.0 5E-56 1.7E-60 394.9 14.9 151 143-310 13-172 (173)
13 3u28_C H/ACA ribonucleoprotein 100.0 5E-33 1.7E-37 231.6 9.1 81 69-149 21-101 (114)
14 2ey4_C Small nucleolar RNP sim 99.9 3.1E-25 1.1E-29 175.7 6.3 74 72-149 5-79 (82)
15 2hvy_B GAR1, small nucleolar R 99.9 8.1E-24 2.8E-28 174.2 8.0 75 72-150 5-80 (104)
16 2eqn_A Hypothetical protein LO 99.8 1.3E-21 4.4E-26 160.8 7.7 78 72-149 22-102 (103)
17 2v3m_A NAF1; ribosomal protein 99.8 6E-21 2.1E-25 162.9 7.7 80 71-150 26-112 (131)
18 3u28_C H/ACA ribonucleoprotein 38.0 12 0.00041 31.0 1.5 25 9-34 11-35 (114)
19 2f1l_A 16S rRNA processing pro 26.2 59 0.002 28.3 4.1 35 101-135 119-153 (187)
20 2gtj_A FYN-binding protein; SH 22.7 64 0.0022 25.8 3.2 41 137-194 42-82 (96)
21 1ug1_A KIAA1010 protein; struc 20.7 55 0.0019 26.0 2.5 29 134-163 30-60 (92)
22 3h9n_A Ribosome maturation fac 20.5 93 0.0032 26.7 4.1 33 101-133 101-133 (177)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=1.2e-59 Score=419.86 Aligned_cols=162 Identities=23% Similarity=0.342 Sum_probs=152.2
Q ss_pred ccCCCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccc
Q psy295 140 SFKPNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIA 214 (326)
Q Consensus 140 SFk~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~ 214 (326)
.-.++..++|||||+||++|||+| .+++||++ ++++| |+|||||||||++| |||||||||++.|+
T Consensus 11 ~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~~~ 80 (178)
T 3q46_A 11 PEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFY------PVDYGIIPQTWYDD----GDPFDIMVIMREPV 80 (178)
T ss_dssp SBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCC------SSEEEECTTCCBTT----TBCCEEEECCSSCC
T ss_pred CCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCC------CcccccCCCccCCC----CCeeEEEEEcCCCC
Confidence 335788999999999999999999 99999999 99999 99999999999998 99999999999999
Q ss_pred cceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCCCcceecccCcc
Q psy295 215 KRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEA 294 (326)
Q Consensus 215 ~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK~vn~f~~~~g~ 294 (326)
+|||+++|||||+|+|+|+||+||||||||++||+|++++|++||++ +++++|+|||++||.||||+++. .+|
T Consensus 81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~---~~l~~i~~fF~~YK~legK~v~~----~g~ 153 (178)
T 3q46_A 81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPK---AFLDEIAHFFQRYKELQGKTTKI----EGW 153 (178)
T ss_dssp CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCH---HHHHHHHHHHHHTTGGGTCCEEE----EEE
T ss_pred CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCH---HHHHHHHHHHHHhcCcCCCceEe----ccc
Confidence 99999999999999999999999999999999999999999999995 59999999999999999999965 469
Q ss_pred cCHHHHHHHHHHHHHHHHHhhcCc
Q psy295 295 KNREFAHKVIEETNHQWSKLIKGE 318 (326)
Q Consensus 295 ~~~e~A~~vI~~a~~~y~~l~~~~ 318 (326)
.|+++|+++|++||++|++++..+
T Consensus 154 ~~~~~A~~~I~~~~~~~~~~~~~~ 177 (178)
T 3q46_A 154 GNAEEAKREILRAIEMYKEKFGKE 177 (178)
T ss_dssp EEHHHHHHHHHHHHHHHHHC-CCC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999998643
No 2
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=1.2e-57 Score=411.75 Aligned_cols=157 Identities=22% Similarity=0.309 Sum_probs=149.0
Q ss_pred ccCCCCccceEEecCCCc-eeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEecccc
Q psy295 140 SFKPNDLIPVLLVFKFKC-VMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQI 213 (326)
Q Consensus 140 SFk~GDkI~vIEIp~gs~-vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p 213 (326)
.-.+++.++|||||+||+ +|||+| .+++||+| ++++| |+|||||||||++| |||||||||++.|
T Consensus 31 ~~~p~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~Y------P~NYGfIP~Tl~~D----gDPLDvlvl~~~p 100 (196)
T 3gvf_A 31 KDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRY------PVNYGFIPQTLSGD----GDPVDVLVITPFP 100 (196)
T ss_dssp SBTTTBEEEEEEECTTCCSEEEEEETTTTEEEEEEECTTCCCC------SSEEEECTTCCCTT----SSCCEEEECCSSC
T ss_pred CCCCCEEEEEEEecCCCCceEEEEecCCCCEEEEeEcCCCccC------CcccccccCccCCC----CCceEEEEecCCc
Confidence 334678889999999997 999999 99999999 99999 99999999999988 9999999999999
Q ss_pred ccceeEEEEEEEEEEEeeeCCccceEEEEEecCC--CCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecc
Q psy295 214 AKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND--PNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFAL 290 (326)
Q Consensus 214 ~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~D--P~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~ 290 (326)
++|||+++|||||+|.|+|+||.||||||||++| |+|++|+|++||++ +++++|+|||++||.|| ||++ +
T Consensus 101 ~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~---~~l~~I~~fF~~YK~le~gK~v----~ 173 (196)
T 3gvf_A 101 LLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPA---YLKDQIKHFFEQYKALEKGKWV----K 173 (196)
T ss_dssp CCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCH---HHHHHHHHHHHHTTTTSTTCCE----E
T ss_pred cCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCH---HHHHHHHHHHHHhcCcCCCCeE----E
Confidence 9999999999999999999999999999999998 99999999999985 59999999999999999 9998 5
Q ss_pred cCcccCHHHHHHHHHHHHHHHHH
Q psy295 291 NGEAKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 291 ~~g~~~~e~A~~vI~~a~~~y~~ 313 (326)
+++|.|+++|+++|++|+++|++
T Consensus 174 v~gw~~~~~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 174 VEGWDGIDAAHKEITDGVANFKK 196 (196)
T ss_dssp EEEEECHHHHHHHHHHHHHHHTC
T ss_pred eccCcCHHHHHHHHHHHHHHHhC
Confidence 67899999999999999999964
No 3
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=2.5e-57 Score=410.01 Aligned_cols=155 Identities=26% Similarity=0.300 Sum_probs=147.5
Q ss_pred CCCCccceEEecCC-CceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEecccccc
Q psy295 142 KPNDLIPVLLVFKF-KCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAK 215 (326)
Q Consensus 142 k~GDkI~vIEIp~g-s~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~ 215 (326)
.++..++|||||+| |++|||+| .+++||++ ++++| |+|||||||||++| |||||||||+++|++
T Consensus 33 ~p~~vnvvIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPLDvlvl~~~p~~ 102 (197)
T 3fq3_A 33 PPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTY------PGNYGFVPHTLSED----GDPIDVLVCNTRPLI 102 (197)
T ss_dssp TTSCEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCC------SSEEEECTTCCCTT----SSCCEEEECCSSCCC
T ss_pred CCCEEEEEEEecCCCCCEeEEEecCCCCEEEEeecCCCCcC------CcccccccCcccCC----CCceEEEEEcCCCCC
Confidence 46778899999996 89999999 99999999 99999 99999999999988 999999999999999
Q ss_pred ceeEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccC
Q psy295 216 RGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNG 292 (326)
Q Consensus 216 pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~ 292 (326)
|||+++|||||+|.|+|+||.||||||||++ ||+|++|+|++||++ +++++|+|||++||.|| ||++ +++
T Consensus 103 pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~---~~l~~I~~fF~~YK~le~~K~v----~v~ 175 (197)
T 3fq3_A 103 PGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPE---ITLKQIAHFFEHYKDLEPGKWV----KIG 175 (197)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCH---HHHHHHHHHHHHTTTTSTTCCE----EEC
T ss_pred CceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCH---HHHHHHHHHHHHhcCcCCCCeE----EeC
Confidence 9999999999999999999999999999999 999999999999985 59999999999999999 8988 678
Q ss_pred cccCHHHHHHHHHHHHHHHHH
Q psy295 293 EAKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 293 g~~~~e~A~~vI~~a~~~y~~ 313 (326)
+|.|+++|+++|++|+++|++
T Consensus 176 ~~~~~~~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 176 DWGDEDYARKFIVEAIERAKG 196 (197)
T ss_dssp CCBCHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999975
No 4
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=2.4e-57 Score=403.35 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=148.0
Q ss_pred CCCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccc
Q psy295 142 KPNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKR 216 (326)
Q Consensus 142 k~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~p 216 (326)
.++..++|||||+||++|||+| .+++||++ ++++| |+||||||+||++| |||||||||+++|++|
T Consensus 9 ~p~~~nvvIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~p~~~ 78 (173)
T 1qez_A 9 APDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNY------PFNYGFIPGTLEED----GDPLDVLVITNYQLYP 78 (173)
T ss_dssp TTTSEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSBCC------SSEEEECTTCCCTT----SSCCEEEECCSSCCCT
T ss_pred CCCeEEEEEEECCCCCeEEEEecCCCCEEEEeecCCCCcC------CccccccccccCCC----CCceEEEEECCCCCCC
Confidence 3578889999999999999999 99999999 99999 99999999999988 9999999999999999
Q ss_pred eeEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccCc
Q psy295 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNGE 293 (326)
Q Consensus 217 G~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~g 293 (326)
||+++|||||+|.|+|+||.||||||||++ ||+|++++|++||+++ ++++|+|||++||.|| ||+++ +++
T Consensus 79 G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~i~~fF~~YK~le~gK~v~----~~g 151 (173)
T 1qez_A 79 GSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQA---TKNKIVHFFEHYKELEPGKYVK----ISG 151 (173)
T ss_dssp TCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHH---HHHHHHHHHHHTTTTSTTCCEE----EEE
T ss_pred ccEEEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHH---HHHHHHHHHHHhccccCCCceE----Ecc
Confidence 999999999999999999999999999999 9999999999999965 9999999999999999 99984 468
Q ss_pred ccCHHHHHHHHHHHHHHHHH
Q psy295 294 AKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 294 ~~~~e~A~~vI~~a~~~y~~ 313 (326)
|.++++|+++|++||++|++
T Consensus 152 w~~~~~A~~~I~~~~~~~~~ 171 (173)
T 1qez_A 152 WGSATEAKNRIQLAIKRVSG 171 (173)
T ss_dssp EECHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999986
No 5
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=2.3e-57 Score=405.03 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=147.1
Q ss_pred CCccceEEecCCCc-eeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccce
Q psy295 144 NDLIPVLLVFKFKC-VMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRG 217 (326)
Q Consensus 144 GDkI~vIEIp~gs~-vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG 217 (326)
+..++|||||+||+ +|||+| .+++||++ ++|+| |+|||||||||++| |||||||||++.|++||
T Consensus 15 ~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~p~~pG 84 (178)
T 3tr4_A 15 DDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRY------PCNYGFVPSTLAQD----GDPLDVLVLTPVPVQPG 84 (178)
T ss_dssp TEEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCC------SSEEEECTTCCCTT----SSCCEEEECCSSCCCTT
T ss_pred CEEEEEEEecCCCCcEEEEEecCCCcEEEEEecCcCccC------CccccccCCcccCC----CCceEEEEECCCCCCCe
Confidence 77899999999998 999999 99999999 99999 99999999999988 99999999999999999
Q ss_pred eEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccCcc
Q psy295 218 EIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNGEA 294 (326)
Q Consensus 218 ~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~g~ 294 (326)
|+++|||||+|+|+|+||+||||||||++ ||+|++|+|++||++ +++++|+|||++||.|| ||++ .+++|
T Consensus 85 ~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~---~~l~~i~~fF~~YK~le~gK~v----~~~g~ 157 (178)
T 3tr4_A 85 VLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISS---LLLDAISHFFERYKDLEPNKWA----KVKGW 157 (178)
T ss_dssp CEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCH---HHHHHHHHHHHHTTTTSTTCCE----EEEEE
T ss_pred eEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCH---HHHHHHHHHHHHHcCcCCCcee----EeccC
Confidence 99999999999999999999999999999 899999999999985 59999999999999999 6888 56789
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q psy295 295 KNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 295 ~~~e~A~~vI~~a~~~y~~ 313 (326)
.++++|+++|++||++|++
T Consensus 158 ~~~~~A~~~I~~~~~~~~~ 176 (178)
T 3tr4_A 158 EDKEAAKKEFEASIVRFKE 176 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999986
No 6
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=3.1e-57 Score=403.00 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=148.1
Q ss_pred CCCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccc
Q psy295 142 KPNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKR 216 (326)
Q Consensus 142 k~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~p 216 (326)
.++..++|||||+||++|||+| .+++||++ ++|+| |+|||||||||++| |||||||||++.|++|
T Consensus 12 ~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~p~~p 81 (174)
T 2prd_A 12 APEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFY------PGDYGFIPSTLAED----GDPLDGLVLSTYPLLP 81 (174)
T ss_dssp TTTEEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSCCC------SSEEEECSSCCCTT----SSCCEEEEECSSCCCT
T ss_pred CCCEEEEEEEecCCCCeEEEEecCCCCEEEeeecCCCCcC------CcccccccCcccCC----CCceEEEEECCCCCCC
Confidence 3578889999999999999999 99999999 99999 99999999999988 9999999999999999
Q ss_pred eeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCC---CCCcceecccCc
Q psy295 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD---GKPENVFALNGE 293 (326)
Q Consensus 217 G~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le---GK~vn~f~~~~g 293 (326)
||+++|||||+|.|+|+||.|||||||+++||+|++|+|++||+++ ++++|+|||++||+|| ||+++ +.+
T Consensus 82 G~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~---~l~~i~~fF~~YK~le~k~gK~v~----~~g 154 (174)
T 2prd_A 82 GVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEG---VKQEIQHFFETYKALEAKKGKWVK----VTG 154 (174)
T ss_dssp TCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHH---HHHHHHHHHHHTTGGGGGGTCCEE----EEE
T ss_pred ceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHH---HHHHHHHHHHHhcCccccCCCceE----ECc
Confidence 9999999999999999999999999999999999999999999965 9999999999999999 99984 458
Q ss_pred ccCHHHHHHHHHHHHHHHHH
Q psy295 294 AKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 294 ~~~~e~A~~vI~~a~~~y~~ 313 (326)
|.++++|+++|++||++|++
T Consensus 155 w~~~~~A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 155 WRDRKAALEEVRACIARYKG 174 (174)
T ss_dssp EECHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999974
No 7
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=9.7e-58 Score=405.39 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=145.6
Q ss_pred CccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccceeE
Q psy295 145 DLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEI 219 (326)
Q Consensus 145 DkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG~v 219 (326)
..++|||||+||++|||+| .+++||++ ++++| |+||||||+||++| |||||||||++.|++|||+
T Consensus 12 ~~nvvIEIP~gs~~KyE~Dk~~G~l~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----GDPlDvlvl~~~p~~pG~v 81 (172)
T 1sxv_A 12 QFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAY------PTDYGFIEDTLGDD----GDPLDALVLLPQPVFPGVL 81 (172)
T ss_dssp CEEEEEEECTTCCEEC-CCTTTCCCCCCEECSSSCCC------SSEEEEETTCCCTT----SSCCEEEECCSSCCCTTCE
T ss_pred EEEEEEEECCCCCeEEEEEcCCCCEEEEeecCCCCCC------CcCcCccCCccCCC----CCCeEEEEEcCCCcCCceE
Confidence 4678999999999999999 99999999 99999 99999999999988 9999999999999999999
Q ss_pred EEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccCcccCHH
Q psy295 220 IQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNGEAKNRE 298 (326)
Q Consensus 220 v~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~g~~~~e 298 (326)
++|||||+|.|+|+||.||||||||++||+|++++|++|||++ ++++|+|||++||+|| ||++ .+++|.+++
T Consensus 82 i~~r~iGvl~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~---~l~~I~~fF~~YK~le~gK~v----~v~gw~~~~ 154 (172)
T 1sxv_A 82 VAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAF---ELDAIKHFFVHYKDLEPGKFV----KAADWVDRA 154 (172)
T ss_dssp EEEEEEEEEEEEETTEECCEEEEEETTCGGGTTCCSGGGSCHH---HHHHHHHHHHHTTTTSTTCCE----EEEEEECHH
T ss_pred EEEEEEEEEEecCCCCCCCEEEEEeCCCCCccccCChHHCCHH---HHHHHHHHHHHhcCcCCCCeE----EeCCCCCHH
Confidence 9999999999999999999999999999999999999999975 9999999999999999 9998 567899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy295 299 FAHKVIEETNHQWSK 313 (326)
Q Consensus 299 ~A~~vI~~a~~~y~~ 313 (326)
+|+++|++|+++|++
T Consensus 155 ~A~~~I~~~~~~~~~ 169 (172)
T 1sxv_A 155 EAEAEVQRSVERFKA 169 (172)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999987
No 8
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=2.6e-57 Score=429.38 Aligned_cols=177 Identities=44% Similarity=0.704 Sum_probs=166.6
Q ss_pred CCCccceEEecCCCceeeeEE---------------EEEEeccc-ccccccccCCCcccccccccCCCCCC--------C
Q psy295 143 PNDLIPVLLVFKFKCVMYLLR---------------LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDL--------V 198 (326)
Q Consensus 143 ~GDkI~vIEIp~gs~vKyE~d---------------~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~--------~ 198 (326)
++..++|||||+||++|||+| .+++||++ ++++| |+|||||||||++.. .
T Consensus 40 ~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~l~~~~~Y------P~NYGfIPqTledp~~~~~~t~~~ 113 (286)
T 1e9g_A 40 NNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGY------IHNYGAFPQTWEDPNVSHPETKAV 113 (286)
T ss_dssp TTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCEETTCCSC------SSEEEECSSCCCCTTSEETTTTEE
T ss_pred CCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEeccCCCCCC------ccCcccCcccccCcccccccCCCC
Confidence 377889999999999999996 57899999 88999 999999999995533 4
Q ss_pred CCCCcceEEEeccccccceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHcc
Q psy295 199 LKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK 278 (326)
Q Consensus 199 gDGDPLDVlVl~~~p~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK 278 (326)
|||||||||||++.|++|||+++|||||+|+|+|+||+|||||||+++||+|++|+|++||++++|+++++|+|||++||
T Consensus 114 gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~Dp~~~~i~di~Dl~~~~p~~l~~i~~fF~~YK 193 (286)
T 1e9g_A 114 GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYK 193 (286)
T ss_dssp BCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTSTTGGGCCSHHHHHHHSTTHHHHHHHHHHHTT
T ss_pred CCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCCcccccCCCHHHhchhhHHHHHHHHHHHHHhc
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceecccCcccCHHHHHHHHHHHHHHHHHhhcCcc-CCCCCC
Q psy295 279 IPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEV-NAEGVA 325 (326)
Q Consensus 279 ~leGK~vn~f~~~~g~~~~e~A~~vI~~a~~~y~~l~~~~~-~~~~~~ 325 (326)
.+|||++|.|+.+++|.++++|+++|++||++|++++.|+. +.++|+
T Consensus 194 ~leGK~~n~~~~~~~~~~~~~A~~vI~~~~~~~~~l~~~~~~~~~~~~ 241 (286)
T 1e9g_A 194 IPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSKGID 241 (286)
T ss_dssp GGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHTTCCSCCTTCC
T ss_pred CcCCCCcceeEecCcCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 99999999998889999999999999999999999999998 777765
No 9
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=5.7e-57 Score=401.54 Aligned_cols=155 Identities=22% Similarity=0.267 Sum_probs=148.9
Q ss_pred CCCCccceEEecCCCc-eeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEecccccc
Q psy295 142 KPNDLIPVLLVFKFKC-VMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAK 215 (326)
Q Consensus 142 k~GDkI~vIEIp~gs~-vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~ 215 (326)
.++..++|||||+||+ +|||+| .+++||++ ++|+| |+||||||+||++| |||||||||+++|++
T Consensus 11 ~p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~p~~ 80 (175)
T 2au7_A 11 LPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFY------PCNYGYINHTLSLD----GDPVDVLVPTPYPLQ 80 (175)
T ss_dssp TTTBEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSCCC------SSEEEECTTCCCTT----SSCCEEEECCSSCCC
T ss_pred CCCEEEEEEEecCCCCceeEEEecCCCCEEEeeecCCCCcC------CcCcCccCCccCCC----CCceEEEEECCCCCC
Confidence 4678899999999999 999999 99999999 99999 99999999999988 999999999999999
Q ss_pred ceeEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccC
Q psy295 216 RGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNG 292 (326)
Q Consensus 216 pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~ 292 (326)
|||+++|||||+|.|+|+||.||||||||++ ||+|++++|++||+++ ++++|+|||++||.|| ||++++ .
T Consensus 81 pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~i~~fF~~YK~le~gK~v~v----~ 153 (175)
T 2au7_A 81 PGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPEL---LKAQIAHFFEHYKDLEKGKWVKV----E 153 (175)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHH---HHHHHHHHHHHTTTTSTTCCEEE----E
T ss_pred CceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHH---HHHHHHHHHHHhhCccCCCCeEE----c
Confidence 9999999999999999999999999999999 9999999999999965 9999999999999999 999965 4
Q ss_pred cccCHHHHHHHHHHHHHHHHH
Q psy295 293 EAKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 293 g~~~~e~A~~vI~~a~~~y~~ 313 (326)
+|.++++|+++|++||++|++
T Consensus 154 gw~~~~~A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 154 GWENAEAAKAEIVASFERAKN 174 (175)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999986
No 10
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=5.1e-57 Score=408.47 Aligned_cols=155 Identities=22% Similarity=0.274 Sum_probs=147.9
Q ss_pred CCCCccceEEecCCC-ceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEecccccc
Q psy295 142 KPNDLIPVLLVFKFK-CVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAK 215 (326)
Q Consensus 142 k~GDkI~vIEIp~gs-~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~ 215 (326)
.+++.++|||||+|| ++|||+| .+++||+| ++++| |+|||||||||++| |||||||||++.|++
T Consensus 33 ~p~~vnvvIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----GDPLDvlvl~~~p~~ 102 (199)
T 3ld3_A 33 APEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYY------PCNYGFIPNTIAGD----GDPVDVLVLARFPVM 102 (199)
T ss_dssp TTTSEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSBCC------SSEEEECTTCCCTT----SSCCEEEECCSSCCC
T ss_pred CCCEEEEEEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcC------CcccccccccccCC----CCceEEEEecCCCCC
Confidence 467889999999998 5999999 99999999 99999 99999999999988 999999999999999
Q ss_pred ceeEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccC
Q psy295 216 RGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNG 292 (326)
Q Consensus 216 pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~ 292 (326)
|||+++|||||+|.|+|+||.||||||||++ ||+|++|+|++||++ +++++|+|||++||.|| ||++ +++
T Consensus 103 pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~---~~l~~I~~fF~~YK~le~gK~v----~v~ 175 (199)
T 3ld3_A 103 PGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPS---SFLDSISHFFSFYKKLEKDKFV----SVG 175 (199)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCH---HHHHHHHHHHHHTTTTSTTCCE----EEE
T ss_pred CceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCH---HHHHHHHHHHHHhcCcCCCceE----Eec
Confidence 9999999999999999999999999999999 999999999999985 59999999999999999 7888 668
Q ss_pred cccCHHHHHHHHHHHHHHHHH
Q psy295 293 EAKNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 293 g~~~~e~A~~vI~~a~~~y~~ 313 (326)
+|.|+++|+++|++|+++|++
T Consensus 176 gw~~~~~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 176 CWQDAASAKELIRSAIIAAKK 196 (199)
T ss_dssp EEEEHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999985
No 11
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=1.3e-56 Score=398.73 Aligned_cols=154 Identities=24% Similarity=0.364 Sum_probs=147.8
Q ss_pred CCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccce
Q psy295 143 PNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRG 217 (326)
Q Consensus 143 ~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~pG 217 (326)
++..++|||||+||++|||+| .+++||++ ++++| |+||||||+||++| |||||||||+++|++||
T Consensus 12 p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~p~~~G 81 (173)
T 2bqx_A 12 ADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNY------PANYGFVPNTLGSD----GDPVDALVLSDVAFQAG 81 (173)
T ss_dssp TTEEEEEEEECTTCSEEEEECTTTCCEEEEEECSSSCCC------SSEEEECSSCCCTT----SSCCEEEECCSSCCCTT
T ss_pred CCeEEEEEEECCCCCeEEEEecCCCCEEEeeecCCCCcC------cccccccccccCCC----CCceEEEEECCCCCCCc
Confidence 678899999999999999999 99999999 99999 99999999999988 99999999999999999
Q ss_pred eEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccCcc
Q psy295 218 EIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNGEA 294 (326)
Q Consensus 218 ~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~g~ 294 (326)
|+++|||||+|.|+|+||.||||||||++ ||+|++++|++||+++ ++++|+|||++||.+| ||++ .+++|
T Consensus 82 ~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~i~~fF~~YK~le~gK~v----~~~g~ 154 (173)
T 2bqx_A 82 SVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKH---TLDKIKHFFETYKDLEPNKWV----KVKGF 154 (173)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHH---HHHHHHHHHHHTTTTSTTCCE----EEEEE
T ss_pred eEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHH---HHHHHHHHHHHhccccCCCce----eeCcC
Confidence 99999999999999999999999999999 9999999999999965 9999999999999999 9998 55689
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q psy295 295 KNREFAHKVIEETNHQWSK 313 (326)
Q Consensus 295 ~~~e~A~~vI~~a~~~y~~ 313 (326)
.++++|+++|++||++|++
T Consensus 155 ~~~~~A~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 155 ENKESAIKVLEKAIKAYQG 173 (173)
T ss_dssp EEHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999964
No 12
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=5e-56 Score=394.89 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=145.1
Q ss_pred CCCccceEEecCCCc-eeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccccc
Q psy295 143 PNDLIPVLLVFKFKC-VMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKR 216 (326)
Q Consensus 143 ~GDkI~vIEIp~gs~-vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~~p 216 (326)
++..++|||||+||+ +|||+| .+++||++ ++++| |+|||||||||++| |||||||||+++|++|
T Consensus 13 p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~p~~~ 82 (173)
T 3d53_A 13 NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSY------PCNYGFIPDTLSND----GDPVDVLVVAHHPVVP 82 (173)
T ss_dssp TTCEEEEEEECTTCCSEEEEECTTTCCEEEEEECCSSCCC------SSEEEECTTCCCTT----SSCCEEEECCSSCCCT
T ss_pred CCeEEEEEEeCCCCCceeEEEecCCCCEEEeeecCCCCcC------CcccchhhCCccCC----CCceEEEEECCCccCC
Confidence 678899999999999 999999 99999999 99999 99999999999988 9999999999999999
Q ss_pred eeEEEEEEEEEEEeeeCCccceEEEEEecC--CCCcCCCCCcccccccCcchHHHHHHHHhHccCCC-CCCcceecccCc
Q psy295 217 GEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKPENVFALNGE 293 (326)
Q Consensus 217 G~vv~vR~IGvL~MiDeGE~D~KIIaVp~~--DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~le-GK~vn~f~~~~g 293 (326)
||+++|||||+|.|+|+||.||||||||++ ||+|++++|++||+++ ++++|+|||++||.|| ||+++ +++
T Consensus 83 G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~i~~fF~~YK~le~gK~v~----v~g 155 (173)
T 3d53_A 83 GSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEM---LKKRIVHFFEHYKDLEKGKWVK----VTG 155 (173)
T ss_dssp TCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHH---HHHHHHHHHHHTTTTSTTCCEE----EEE
T ss_pred ceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHH---HHHHHHHHHHHHcCccCCCcEE----Ecc
Confidence 999999999999999999999999999999 9999999999999965 9999999999999999 99984 468
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy295 294 AKNREFAHKVIEETNHQ 310 (326)
Q Consensus 294 ~~~~e~A~~vI~~a~~~ 310 (326)
|.++++|+++|++||++
T Consensus 156 w~~~~~A~~~I~~~~~~ 172 (173)
T 3d53_A 156 WGDKVKAETLIKEGIDR 172 (173)
T ss_dssp EECHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhc
Confidence 99999999999999975
No 13
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=99.98 E-value=5e-33 Score=231.62 Aligned_cols=81 Identities=41% Similarity=0.753 Sum_probs=76.8
Q ss_pred CcCCceeEEeeeeEeeecCeEEEEecCCCCCCcCCceeecccccceeeeeeccCccceEEEEEeCCcccccccCCCCccc
Q psy295 69 FCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIP 148 (326)
Q Consensus 69 ~~~~~~v~~lG~f~H~~e~~lV~k~~~~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~ 148 (326)
..+|++|++||+|+|+||++||||+++++||||||+||+|||++||||||||||+|++|||||+++|++|+|||+||++-
T Consensus 21 ~gpp~~v~elG~f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~gv~a~Sfk~gdk~Y 100 (114)
T 3u28_C 21 MGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFY 100 (114)
T ss_dssp --CCSCEEEEEEEEEEETTEEEEEECSSSEECTTCEEECTTCCEEEEEEEEESBTTSCEEEEEECTTCCGGGCCTTCEEE
T ss_pred CCCCHHHheeeeEEEEeCCeEEEEeCCCCCCCCCCEeEccCCccceeEeEEeCCCCccEEEEEecCCCcccccccCCEEE
Confidence 45899999999999999999999999889999999999999999999999999999999999999999999999999965
Q ss_pred e
Q psy295 149 V 149 (326)
Q Consensus 149 v 149 (326)
+
T Consensus 101 I 101 (114)
T 3u28_C 101 I 101 (114)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=99.91 E-value=3.1e-25 Score=175.72 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=66.8
Q ss_pred CceeEEeeeeEeee-cCeEEEEecCCCCCCcCCceeecccccceeeeeeccCccceEEEEEeCCcccccccCCCCccce
Q psy295 72 SLQVIKMGYFTHTS-QDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPV 149 (326)
Q Consensus 72 ~~~v~~lG~f~H~~-e~~lV~k~~~~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~v 149 (326)
+++|++||+|+|.| +++||||++ ++|+|||+||++|+++||||+|||||+|++||+||+++ .+++++ .||++-+
T Consensus 5 ~~~mk~lG~~~h~~~~g~lV~k~~--~~P~~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~~-~~~~s~-~g~klYi 79 (82)
T 2ey4_C 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY-VGEVLYV 79 (82)
T ss_dssp ---CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS-SSCSTT-BTCCCEE
T ss_pred cceeEEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeCC-CChhhc-CCCeEEe
Confidence 56899999999999 899999986 79999999999999999999999999999999999998 478888 9998653
No 15
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=99.89 E-value=8.1e-24 Score=174.23 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=64.8
Q ss_pred CceeEEeeeeEeee-cCeEEEEecCCCCCCcCCceeecccccceeeeeeccCccceEEEEEeCCcccccccCCCCccceE
Q psy295 72 SLQVIKMGYFTHTS-QDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVL 150 (326)
Q Consensus 72 ~~~v~~lG~f~H~~-e~~lV~k~~~~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~gmkAsSFk~GDkI~vI 150 (326)
+++|++||+|+|.| +++||||++ ++|+|||+||++|+++||||+|||||+|++||+||+++. +++++ .||++-+-
T Consensus 5 ~~~mk~lG~~~H~~~~g~lVvk~~--~vP~~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~~~-s~~~~-~G~klYI~ 80 (104)
T 2hvy_B 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS-NPEIY-VGEVLYVD 80 (104)
T ss_dssp ---CEEEEEEEEEETTTEEEEECS--SCCCTTCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS-CGGGG-TTCEEEEC
T ss_pred cceeeEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEecCC-Ccccc-CCCEEEEc
Confidence 57899999999999 899999986 799999999999999999999999999999999999984 33333 99986653
No 16
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=160.75 Aligned_cols=78 Identities=17% Similarity=0.314 Sum_probs=72.2
Q ss_pred CceeEEeeeeEeeecCeEEEEecCC-CCCCcCCceeecccccceeeeeeccCccceEEEEEeCC--cccccccCCCCccc
Q psy295 72 SLQVIKMGYFTHTSQDDLVLKVTLD-DVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGD--EVKSKSFKPNDLIP 148 (326)
Q Consensus 72 ~~~v~~lG~f~H~~e~~lV~k~~~~-~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~--gmkAsSFk~GDkI~ 148 (326)
..++.+||+++|.|++.+|||++.. .+|+|||+||+|||++||||+|||||++++|++||+.+ ++++.+++.|+++-
T Consensus 22 ~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~~~~~i~a~~~~~G~kvY 101 (103)
T 2eqn_A 22 DIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMY 101 (103)
T ss_dssp TSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSSCEEEECCSSHHHHHHHTCCTTCEEE
T ss_pred CCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCCCEEEEEeCcccccccccccCCCEEE
Confidence 3499999999999999999999875 59999999999999999999999999999999999964 89999999999965
Q ss_pred e
Q psy295 149 V 149 (326)
Q Consensus 149 v 149 (326)
+
T Consensus 102 ~ 102 (103)
T 2eqn_A 102 F 102 (103)
T ss_dssp E
T ss_pred e
Confidence 3
No 17
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6e-21 Score=162.88 Aligned_cols=80 Identities=14% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCceeEEeeeeEeeecCeEEEEecC---CCCCCcCCceeecccccceeeeeeccCccceEEEEEeC----CcccccccCC
Q psy295 71 FSLQVIKMGYFTHTSQDDLVLKVTL---DDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVG----DEVKSKSFKP 143 (326)
Q Consensus 71 ~~~~v~~lG~f~H~~e~~lV~k~~~---~~vP~fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~----~gmkAsSFk~ 143 (326)
+..++++||+|+|.|++.+|||++. .++|+|||+||+|||++||||+|||||++++||+||++ +++++.+++.
T Consensus 26 ~~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~~~ 105 (131)
T 2v3m_A 26 EKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 105 (131)
T ss_dssp TTSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHTTT
T ss_pred CCCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhcccCC
Confidence 5689999999999999999999985 36999999999999999999999999999999999998 6699999999
Q ss_pred CCccceE
Q psy295 144 NDLIPVL 150 (326)
Q Consensus 144 GDkI~vI 150 (326)
|+++-+.
T Consensus 106 G~kvY~~ 112 (131)
T 2v3m_A 106 GEKAFIV 112 (131)
T ss_dssp TSEEEEE
T ss_pred CCEEEEC
Confidence 9997654
No 18
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=37.95 E-value=12 Score=30.99 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=11.8
Q ss_pred cccCCCccccCCCCCcceeEEeeccc
Q psy295 9 SIGGGGRFQDQGPPDQEVEVVADFKI 34 (326)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (326)
|.|=--|.+|||||++ |..+..|.|
T Consensus 11 ~~~~~~~~~~~gpp~~-v~elG~f~H 35 (114)
T 3u28_C 11 SSGLVPRGSHMGPPDT-VLEMGAFLH 35 (114)
T ss_dssp ------------CCSC-EEEEEEEEE
T ss_pred ccccccCCCCCCCCHH-HheeeeEEE
Confidence 3444567789999998 888999999
No 19
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=26.20 E-value=59 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.0
Q ss_pred cCCceeecccccceeeeeeccCccceEEEEEeCCc
Q psy295 101 FNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDE 135 (326)
Q Consensus 101 fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~~g 135 (326)
.+..|++++.+.+|+|.+|+=.-.+-.+.|+..+|
T Consensus 119 IGl~V~~~~g~~lG~V~~v~~~ganDvlvV~~~~g 153 (187)
T 2f1l_A 119 EGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAG 153 (187)
T ss_dssp TTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTT
T ss_pred CCeEEEeCCCCEEEEEEEEccCCCcEEEEEEeCCC
Confidence 47889999999999999999766566667886543
No 20
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A
Probab=22.66 E-value=64 Score=25.78 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=29.8
Q ss_pred cccccCCCCccceEEecCCCceeeeEEEEEEecccccccccccCCCcccccccccCCC
Q psy295 137 KSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQ 194 (326)
Q Consensus 137 kAsSFk~GDkI~vIEIp~gs~vKyE~d~~~vDR~l~s~~y~~~~~~P~nYGFIP~Tl~ 194 (326)
+--.|++|+.+=||+.+....-+|-.+ .+ =+.|||||.++-
T Consensus 42 ~dLp~~~GE~LeII~~~e~p~g~Wl~R--------N~---------~G~~GyVp~~~v 82 (96)
T 2gtj_A 42 NELSFKQGEQIEIIRITDNPEGKWLGR--------TA---------RGSYGYIKTTAV 82 (96)
T ss_dssp SCCEECTTCCEEEEECTTCSSSCCEEE--------CT---------TCCBCCCCGGGE
T ss_pred ccCCcCCCCEEEEEEccCCCCCeEEEE--------CC---------CCCCCccchhhE
Confidence 445899999999999997655555544 22 466799998874
No 21
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.70 E-value=55 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=22.8
Q ss_pred CcccccccCCCCccceEE--ecCCCceeeeEE
Q psy295 134 DEVKSKSFKPNDLIPVLL--VFKFKCVMYLLR 163 (326)
Q Consensus 134 ~gmkAsSFk~GDkI~vIE--Ip~gs~vKyE~d 163 (326)
.++.+ ++++||+++||+ =|.|....|=+|
T Consensus 30 q~~dl-~l~~GdlVAVl~k~Dp~Gn~srW~Vd 60 (92)
T 1ug1_A 30 QDLDV-SLLEGDLVGVIKKKDPMGSQNRWLID 60 (92)
T ss_dssp SSSCC-CCCTTCEEEEEESCCTTSCSSEEEEE
T ss_pred Cceee-eecCCCEEEEEecCCCCCCCcceEEE
Confidence 45555 899999999996 788987776554
No 22
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=20.51 E-value=93 Score=26.66 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=27.5
Q ss_pred cCCceeecccccceeeeeeccCccceEEEEEeC
Q psy295 101 FNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVG 133 (326)
Q Consensus 101 fNa~Vy~enk~~IGkVdEIfGPin~~yfsVK~~ 133 (326)
....|++++...+|+|.+|+=.-.+-.+.|+..
T Consensus 101 iGl~V~~~~g~~lG~V~~v~~~gandvl~V~~~ 133 (177)
T 3h9n_A 101 IGCTVVNLEGYTMGTVTEMMETGSNDVLVVKAN 133 (177)
T ss_dssp TTCEEEETTCCEEEEEEEEEESSSCEEEEEECC
T ss_pred cCCEEEeCCCCEEEEEEEEeeCCCcEEEEEEec
Confidence 567899999999999999997766677788853
Done!