RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy295
(326 letters)
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
Length = 267
Score = 161 bits (409), Expect = 7e-48
Identities = 58/111 (52%), Positives = 82/111 (73%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
AK GE+++VK LGV+ +IDEG+ DWK++AI+ +DP A+ +NDV D+E HFPG L A +
Sbjct: 153 AAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRD 212
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEG 323
WF+ YKIPDGKP N F L+ + ++++A KVIEETN W+KL+K + A
Sbjct: 213 WFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRSIPAGE 263
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes
hydrolyze inorganic pyrophosphate (PPi) to two molecules
of orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers.
Length = 155
Score = 123 bits (311), Expect = 1e-34
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
DVLV + G +I+V+ LGV+ +IDEG+TDWK+IA+ V+DP + +ND++D+ P
Sbjct: 57 DVLVIGEEPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVP---P 113
Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNH 309
L +F+ YK +GK E A K++E A K+I+E+
Sbjct: 114 HLLDEIKHFFEHYKDLEGKKEVKVA---GWKDKEEALKIIKESIE 155
>gnl|CDD|189686 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.
Length = 156
Score = 111 bits (280), Expect = 6e-30
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
DVLV + G +++V+ +GV+ +IDEG+TD KIIA+ V+DP +D+ DIE P
Sbjct: 54 DVLVLGPEPLFPGSVVRVRPIGVLAMIDEGETDDKIIAVPVDDPRY---DDIKDIEDLPP 110
Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSK 313
G L +F+ YK + E + + E A K IEE ++ K
Sbjct: 111 GLLDEIEHFFEHYKDLE---EGKWVKVEGWGDAEEAKKEIEEAIERYKK 156
>gnl|CDD|223299 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and
conversion].
Length = 171
Score = 86.1 bits (214), Expect = 2e-20
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
DVLV + G +IQ + +GV+ +IDEG+ D K+IA+ DP + D++D+ H
Sbjct: 69 DVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLL 128
Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSK 313
++ E +K + + ++ E A K I+E ++ +
Sbjct: 129 DEIQHFFETYKDLEKGK------WVKVEGWEDAEEAKKEIKEAIERYKE 171
>gnl|CDD|190975 pfam04410, Gar1, Gar1/Naf1 RNA binding region. Gar1 is a small
nucleolar RNP that is required for pre-mRNA processing
and pseudouridylation. It is co-immunoprecipitated with
the H/ACA families of snoRNAs. This family represents
the conserved central region of Gar1. This region is
necessary and sufficient for normal cell growth, and
specifically binds two snoRNAs snR10 and snR30. This
region is also necessary for nucleolar targeting, and it
is thought that the protein is co-transported to the
nucleolus as part of a nucleoprotein complex. In humans,
Gar1 is also component of telomerase in vivo. Naf1 is an
essentail protein that plays a role in ribosome
biogenesis, modification of spliceosomal small nuclear
RNAs and telomere synthesis, and is homologous to Gar1.
Length = 154
Score = 79.2 bits (196), Expect = 6e-18
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 74 QVIKMGYFTHTSQDDLVLKVTL-DDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKV 132
++ ++G + ++ +V+K T + V F + + L++K IGK+DEIFG + + + SVK
Sbjct: 23 EIEELGTISSVVENQVVIKSTNSEKVLDFGSILCLEDKTVIGKVDEIFGPVNNPFYSVKF 82
Query: 133 -GDEVKSKSFKPNDLI 147
+ +++KS K D +
Sbjct: 83 SSEGIQAKSLKVGDKV 98
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 65.5 bits (160), Expect = 1e-13
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 75 VIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGD 134
+ ++G H +V+ D +P NAP+Y N ++IGK+ ++FG + + Y+ VK D
Sbjct: 1 MKRLGKVLHVCGTGMVIVRDNDRIPPLNAPVYDANLKRIGKVVDVFGPVDEPYILVKPDD 60
Query: 135 EVKSKSFKPND 145
D
Sbjct: 61 RDVKLESLVGD 71
>gnl|CDD|179388 PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.
Length = 184
Score = 48.1 bits (115), Expect = 1e-06
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 199 LKVTLD------DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAK 252
+K LD DVLV+ Q G ++ + +G + +ID+G+TD K+IA++ +D
Sbjct: 47 IKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDH 106
Query: 253 LNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNH--- 309
+N + D+ H+ L +F YK K + + G ++ ++A K +E
Sbjct: 107 INSLKDLPQHW---LDEIEYFFSNYKNWKRK--GITKVKG-FEDEKWALKEYKECVELMK 160
Query: 310 QWSKLIKGE 318
++ KL K E
Sbjct: 161 KYGKLPKDE 169
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional.
Length = 205
Score = 45.8 bits (109), Expect = 7e-06
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 205 DVLVFCFQIAKRGEII-QVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHF 263
D+ V + G I+ Q + +G + +ID G+ D KIIA+ +D ++ D+++
Sbjct: 97 DICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECP--- 153
Query: 264 PGYLKATNEWFKIYK-IPDGKPENVFALNGEAKNREFAHKVI 304
L +F YK P + V +E A KVI
Sbjct: 154 GTLLDRLQHYFLTYKATPGELIKGVEI--VGIYGKEEAQKVI 193
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 43.6 bits (103), Expect = 4e-05
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
DVLV + G ++ +A+G++ +ID+G+ D KIIA+ +DP D+ ++ H
Sbjct: 79 DVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPH-- 136
Query: 265 GYLKATNEWFKIYKIPDGKPEN 286
L +F+ YK K EN
Sbjct: 137 -RLAEIRRFFEDYK----KNEN 153
>gnl|CDD|183872 PRK13149, PRK13149, H/ACA RNA-protein complex component Gar1;
Reviewed.
Length = 73
Score = 35.6 bits (83), Expect = 0.003
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 79 GYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKS 138
G H + ++ + LD P + +Y + ++IGK+ ++FG +K+ YV VK +
Sbjct: 5 GKVLHYAPKGKLI-IRLDKQPPIGSVVYDKKLKKIGKVVDVFGPVKEPYVLVKPDKKDPP 63
Query: 139 K 139
+
Sbjct: 64 E 64
>gnl|CDD|179262 PRK01250, PRK01250, inorganic pyrophosphatase; Provisional.
Length = 176
Score = 32.9 bits (76), Expect = 0.12
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETH 262
DVLV G +I+ + +GV+ + DE D KIIA+ + P + DV D+
Sbjct: 71 DVLVVTPYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDL--- 127
Query: 263 FPGYLKATNE-WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
P LKA + +F+ YK D + + G E A I E
Sbjct: 128 -PELLKAQIKHFFEHYK--DLEKGKWVKVEGWG-GAEEAKAEIVE 168
>gnl|CDD|235369 PRK05231, PRK05231, homoserine kinase; Provisional.
Length = 319
Score = 30.5 bits (70), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 9/39 (23%)
Query: 72 SLQVIKMG-----YFTHTSQDDLVL----KVTLDDVPFF 101
SL+ I G +F T+Q + VL ++T +D+PFF
Sbjct: 26 SLKGIAEGIENSNFFLTTTQGEYVLTLFERLTAEDLPFF 64
>gnl|CDD|182736 PRK10793, PRK10793, D-alanyl-D-alanine carboxypeptidase fraction A;
Provisional.
Length = 403
Score = 29.4 bits (66), Expect = 2.6
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 75 VIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKI----------DEIFGSLK 124
+ + + DDL +K + VP +A Y+ GK+ D SL
Sbjct: 18 ALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDP--ASLT 75
Query: 125 DYYVSVKVGDEVKSKSFKPNDLIPVLL--------VFKFKCVMYL 161
S +G +K+ FK DL+ V VFK +M+L
Sbjct: 76 KMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120
>gnl|CDD|145933 pfam03048, Herpes_UL92, UL92 family. Members of this family, found
in several herpesviruses, include EBV BDLF4, HCMV UL92,
HHV8 31, HSV6 U63. Their function is unknown. The N
terminus of this protein contains 6 conserved cysteines
and histidines that might form a zinc binding domain (A
Bateman pers. obs.).
Length = 192
Score = 28.0 bits (63), Expect = 5.5
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 119 IFGSLKDYYVSVKVGDEVKSKSFKPNDL---IPVLLVFKFKCVMYLLRLFILKYMLISRH 175
+ + Y+ V EVK F +L I L+ F F ++ Y LI
Sbjct: 90 LKSDVYSYFSRSNVYAEVKQAIFTDGELKPHIEDLIKFTFNHCFHIFSEAQKGYDLICS- 148
Query: 176 NLCFSLQVIKMGYFTHTSQDDLVLKVT 202
+ VI Y T T +L+ K T
Sbjct: 149 ---LYIHVIISIYSTKTVYGNLLFKCT 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.415
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,667,108
Number of extensions: 1630540
Number of successful extensions: 1193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1187
Number of HSP's successfully gapped: 21
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)