RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy295
(326 letters)
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 147 bits (372), Expect = 2e-42
Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 8/145 (5%)
Query: 187 GYFTHT----SQDDLVLKVTLD----DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDW 238
G F T + K D DVL IA G++ QVKALG++ L+DEG+TDW
Sbjct: 94 GAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDW 153
Query: 239 KIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNRE 298
K+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN FA +GEAKN++
Sbjct: 154 KVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKK 213
Query: 299 FAHKVIEETNHQWSKLIKGEVNAEG 323
+A +I+ET+ W +LI G+ +
Sbjct: 214 YALDIIKETHDSWKQLIAGKSSDSK 238
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_C
Length = 114
Score = 101 bits (252), Expect = 9e-27
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 74 QVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVG 133
V++MG F H + D+V + +P+FNAPIYL+NK Q+GK+DEI G L + + ++K G
Sbjct: 26 TVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCG 85
Query: 134 DEVKSKSFKPNDLI 147
D V++ SFK D
Sbjct: 86 DGVQATSFKEGDKF 99
Score = 33.0 bits (75), Expect = 0.037
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 182 QVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDE 233
V++MG F H + D+V + + F I ++ +G +DE
Sbjct: 26 TVLEMGAFLHPCEGDIVCRSINTKIPYF-------NAPIYLENKTQVGKVDE 70
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A
{Thermococcus thioreducens} PDB: 3r6e_A* 3q3l_A 3i98_A
3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Length = 178
Score = 67.3 bits (165), Expect = 1e-13
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
D++V + II+ + +G++ + D G DWK++A+ V DP D++D+ F
Sbjct: 71 DIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF- 129
Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
L +F+ YK GK + N E A + I
Sbjct: 130 --LDEIAHFFQRYKELQGKTTKI----EGWGNAEEAKREILR 165
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP:
b.40.5.1
Length = 174
Score = 66.5 bits (163), Expect = 2e-13
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
D LV G +++V+ +G++ + DE D K+I + D + D+ D+
Sbjct: 70 DGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGV- 128
Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
+ +F+ YK + K + G ++R+ A + +
Sbjct: 129 --KQEIQHFFETYKALEAKKGKWVKVTG-WRDRKAALEEVRA 167
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase;
1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A
4ecp_A
Length = 172
Score = 64.6 bits (158), Expect = 8e-13
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
D LV Q G ++ + +G+ ++DE D K++ + DP + D+ D+
Sbjct: 67 DALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFE- 125
Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
L A +F YK D +P +R A ++
Sbjct: 126 --LDAIKHFFVHYK--DLEPGKFVKAAD-WVDRAEAEAEVQR 162
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Length = 199
Score = 62.8 bits (153), Expect = 7e-12
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETH 262
DVLV G +I V+ +GV+ + DE D K++A+ D + + +D+ +
Sbjct: 92 DVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSS 151
Query: 263 FPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
F L + + +F YK + + ++ ++ A ++I
Sbjct: 152 F---LDSISHFFSFYK--KLEKDKFVSVGC-WQDAASAKELIRS 189
>3d53_A Inorganic pyrophosphatase; seattle structural G center for
infectious disease, ssgcid, hydrolase, magnesium
binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Length = 173
Score = 61.5 bits (150), Expect = 1e-11
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETH 262
DVLV G +I+ +A+GV+ + DE D KIIA+ + D + ++ D+
Sbjct: 71 DVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEM 130
Query: 263 FPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
K +F+ YK D + + G ++ A +I+E
Sbjct: 131 L---KKRIVHFFEHYK--DLEKGKWVKVTG-WGDKVKAETLIKE 168
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia
coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A
2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A
1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Length = 175
Score = 61.1 bits (149), Expect = 1e-11
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETH 262
DVLV + G + + + +GV+ + DE D K++A+ + + DV D+
Sbjct: 70 DVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPEL 129
Query: 263 FPGYLKATNEWFKIYK-IPDGKPENVFALNGEAKNREFAHKVIEE 306
+F+ YK + GK V +N E A I
Sbjct: 130 L---KAQIAHFFEHYKDLEKGKWVKV----EGWENAEAAKAEIVA 167
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S
structural genomics center for infectious disease,
ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei
1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Length = 196
Score = 61.6 bits (150), Expect = 2e-11
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND--PNAAKLNDVADIETH 262
DVLV G +++ +ALG++ + DE D K++A+ + P A L + D+ +
Sbjct: 92 DVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAY 151
Query: 263 FPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
+F+ YK + + G + AHK I +
Sbjct: 152 L---KDQIKHFFEQYK--ALEKGKWVKVEG-WDGIDAAHKEITD 189
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori}
PDB: 1ygz_A 2bqy_A
Length = 173
Score = 60.7 bits (148), Expect = 2e-11
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAI--NVNDPNAAKLNDVADIETH 262
D LV + G +++ + +GV+ + DE D K+IA+ + DP + + D+ D+ H
Sbjct: 69 DALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKH 128
Query: 263 FPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
L +F+ YK D +P + G +N+E A KV+E+
Sbjct: 129 T---LDKIKHFFETYK--DLEPNKWVKVKG-FENKESAIKVLEK 166
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism,
hydrolase; HET: MSE; 2.00A {Coxiella burnetii}
Length = 178
Score = 60.4 bits (147), Expect = 3e-11
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNA--AKLNDVADIETH 262
DVLV + G +++V+ALG++ + DE D K++A+ V + + DI +
Sbjct: 72 DVLVLTPVPVQPGVLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSL 131
Query: 263 FPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
L A + +F+ YK D +P + G +++E A K E
Sbjct: 132 L---LDAISHFFERYK--DLEPNKWAKVKG-WEDKEAAKKEFEA 169
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase;
ssgcid, inorganic phosphatase; 1.90A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Length = 197
Score = 60.5 bits (147), Expect = 4e-11
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 187 GYFTHTSQDD---LVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAI 243
G+ HT +D + DVLV + G +I V+ +GV+ + D D KIIA+
Sbjct: 78 GFVPHTLSEDGDPI-------DVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAV 130
Query: 244 NVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYK-IPDGKPENVFALNGEAKNREFA 300
K++D D+ LK +F+ YK + GK + G+ + ++A
Sbjct: 131 PSPHLTRRYEKIHDYTDMPEIT---LKQIAHFFEHYKDLEPGKWVKI----GDWGDEDYA 183
Query: 301 HKVIEE 306
K I E
Sbjct: 184 RKFIVE 189
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
thermostability, magnesium, hydrolase; 2.70A {Sulfolobus
acidocaldarius} SCOP: b.40.5.1
Length = 173
Score = 59.9 bits (146), Expect = 4e-11
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETH 262
DVLV G +I+V+ +G++ + DE D KI+A+ + DP+ + + D+ D+
Sbjct: 67 DVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQA 126
Query: 263 FPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEE 306
+F+ YK + +P ++G + A I+
Sbjct: 127 T---KNKIVHFFEHYK--ELEPGKYVKISG-WGSATEAKNRIQL 164
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 46.5 bits (110), Expect = 5e-07
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 77 KMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKV 132
++G H ++ ++ V + VP N + + Q +G + ++FG +K YV++K
Sbjct: 10 RLGKVLHYAKQGFLI-VRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKP 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 1e-06
Identities = 53/334 (15%), Positives = 98/334 (29%), Gaps = 94/334 (28%)
Query: 23 DQEVEVVADF--------------KIKVPQISPSI-----ASFQIQMCNVLGLLILKY-- 61
++ E+V F IK Q PS+ + ++ N + KY
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNV 131
Query: 62 ----MLISRHNFCFSLQVIK------MGYFTHTSQDDLVLKVTLDD--VPFFNAPIY--- 106
+ L+ K + T + L V L + I+
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLN 188
Query: 107 ----------LQNKQQI-GKIDEIFGSLKDYYVSVKVG-DEVKSKS---FKPNDLIPVLL 151
L+ Q++ +ID + S D+ ++K+ ++++ K LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 152 V------------FKFKCVMYLLRLFILKYMLISRH-NLCFSLQVIKMGYFTHTSQDDLV 198
V F C K +L +R + L TH S D
Sbjct: 249 VLLNVQNAKAWNAFNLSC----------KILLTTRFKQVTDFLSAATT---THISLDHHS 295
Query: 199 LKVTLDDVLVFCFQIAK------RGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAK 252
+ +T D+V + E++ + +I E D N N K
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 253 LNDV--ADIETHFPGYLKATNEWFKIY----KIP 280
L + + + P + + ++ IP
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural
genomics, PSI, protein structur initiative; 2.11A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Length = 82
Score = 43.0 bits (101), Expect = 6e-06
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 77 KMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVK 131
++G H ++ ++ V + VP N + + Q +G + ++FG +K YV++K
Sbjct: 10 RLGKVLHYAKQGFLI-VRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIK 63
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein
BC008207 [HOMO sapiens], structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 36.4 bits (84), Expect = 0.002
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 74 QVIKMGYFTHTSQDDLVLKVTLDDVPF-FNAPIYLQNKQQIGKIDEIFGSLKD--YYVSV 130
++ +G + + ++++ + P I+ ++Q GKI EIFG + Y +
Sbjct: 24 ELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRF 83
Query: 131 KVGDEVKSKSFKPNDLI 147
D ++SK K + +
Sbjct: 84 NSSDHIESKGIKIKETM 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.005
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 19/43 (44%)
Query: 110 KQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLV 152
KQ + K+ SLK Y D P L +
Sbjct: 19 KQALKKLQ---ASLKLY---------------AD-DSAPALAI 42
Score = 32.6 bits (73), Expect = 0.071
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 267 LKATNEWFKIYKIPDGKPENVFALNG 292
LK K+Y D P A+
Sbjct: 22 LKKLQASLKLYA-DDSAP--ALAIKA 44
Score = 28.8 bits (63), Expect = 1.5
Identities = 5/22 (22%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 24 QEVE-VVADFKIKVPQISPSIA 44
Q ++ + A K+ +P++A
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
>2lr4_A SPBC2 prophage-derived uncharacterized protein YO; FAB fragment,
structural genomics, unknown function; NMR {Bacillus
subtilis}
Length = 128
Score = 30.2 bits (67), Expect = 0.37
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 228 IGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIP-DGKPEN 286
+ G T +I G K W K ++IP D +N
Sbjct: 45 VKARFMGYTKLTVITGKDGKNLLYNGTAKMFKSDAILGQNKVVIGWDKYFEIPMDALQDN 104
Query: 287 VFALNGEAKNREFAH 301
+ + F +
Sbjct: 105 SIQIKALSSGTTFVY 119
>3bb9_A Putative orphan protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP:
d.17.4.16
Length = 148
Score = 29.5 bits (65), Expect = 0.79
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 186 MGYFTHTSQDDLVLKVTLDDVLVFC-----FQIAKRGEIIQVKALGVIGLIDEGQTDWKI 240
M Y + ++T+ + Q +G+ I + + LI + WKI
Sbjct: 83 MAYLKGLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKI 142
Query: 241 IAI 243
+
Sbjct: 143 THV 145
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation,
hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Length = 131
Score = 28.8 bits (64), Expect = 1.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 105 IYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVK 137
L+++ IG + E+FG L++ + +K+ D K
Sbjct: 63 FCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKK 95
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 27.1 bits (61), Expect = 9.4
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 277 YKI---PDGKPENVFALNGEAKNREFAHKVIEE 306
Y+ G+ ++ A+ R A++++EE
Sbjct: 364 YRFILGEKGEVLDI-----VAEPRRIANRIVEE 391
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.415
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,013,144
Number of extensions: 301772
Number of successful extensions: 691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 29
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)