RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy295
         (326 letters)



>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 284

 Score =  130 bits (329), Expect = 2e-36
 Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 8/146 (5%)

Query: 186 MGYFTHTSQD----DLVLKVTLD----DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTD 237
            G F  T +D        K   D    DVL     IA  G++ QVKALG++ L+DEG+TD
Sbjct: 93  YGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETD 152

Query: 238 WKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNR 297
           WK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN FA +GEAKN+
Sbjct: 153 WKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNK 212

Query: 298 EFAHKVIEETNHQWSKLIKGEVNAEG 323
           ++A  +I+ET+  W +LI G+ +   
Sbjct: 213 KYALDIIKETHDSWKQLIAGKSSDSK 238


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
           thermophilus [TaxId: 274]}
          Length = 174

 Score = 94.6 bits (235), Expect = 4e-24
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
           D LV        G +++V+ +G++ + DE   D K+I +   D     + D+ D+     
Sbjct: 70  DGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDV---PE 126

Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQW 311
           G  +    +F+ YK  + K      + G  ++R+ A + +     ++
Sbjct: 127 GVKQEIQHFFETYKALEAKKGKWVKVTG-WRDRKAALEEVRACIARY 172


>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 173

 Score = 93.8 bits (233), Expect = 8e-24
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
           D++V   +      II+ + +G+  +ID G  D+K++A+ V DP      D+ D+     
Sbjct: 70  DIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKDIDDVP---K 126

Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSK 313
            +L     +FK YK   GK   V       +  E A + I      + +
Sbjct: 127 AFLDEIAHFFKRYKELQGKEIIVEGW----EGAEAAKREILRAIEMYKE 171


>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 175

 Score = 83.8 bits (207), Expect = 4e-20
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
           DVLV      + G + + + +GV+ + DE   D K++A+  +  +  + + + D+     
Sbjct: 70  DVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLS-KEYDHIKDVNDLPE 128

Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSK 313
                   +F+ YK  +             +N E A   I  +  +   
Sbjct: 129 LLKAQIAHFFEHYKDLEKGKWVKV---EGWENAEAAKAEIVASFERAKN 174


>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon
           Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 170

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 186 MGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINV 245
            G+   T ++D        DVLV        G +I+V+ +G++ + DE   D KI+A+  
Sbjct: 51  YGFIPGTLEEDG----DPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPK 106

Query: 246 NDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIE 305
           +       +++ DI             +F+ YK  + +P     ++G   +   A   I+
Sbjct: 107 DK-TDPSFSNIKDINDLPQATKNKIVHFFEHYK--ELEPGKYVKISG-WGSATEAKNRIQ 162

Query: 306 ET 307
             
Sbjct: 163 LA 164


>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 73

 Score = 65.5 bits (160), Expect = 1e-14
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 77  KMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEV 136
           ++G   H ++   ++ V  + VP  N  +  +  Q +G + ++FG +K  YV++K     
Sbjct: 3   RLGKVLHYAKQGFLI-VRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSN 61

Query: 137 KSKSF 141
                
Sbjct: 62  PEIYV 66


>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 27.5 bits (60), Expect = 2.3
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 160 YLLRLF----ILKYMLISRHNLCFSLQVIK 185
           Y+  L     IL  ML++ HN+ F  Q+++
Sbjct: 320 YIHHLIRAGEILGAMLMTEHNIAFYQQLMQ 349


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,229,270
Number of extensions: 58512
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)