BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2950
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 103/167 (61%), Gaps = 7/167 (4%)
Query: 221 EQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 279
EQ V +I + +D ++ NDI+LL+L+ FN+ V+PI LP G T T DV +++G
Sbjct: 74 EQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDV-IVTG 132
Query: 280 WGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
WG SEGG+ P +LQ VPL E+CR Y ++ + +C G +GG DSCQGD
Sbjct: 133 WGTTSEGGNTPDVLQKVTVPLVSDEDCRADYG----ADEILDSMICAGVPEGGKDSCQGD 188
Query: 340 SGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
SGGPLA G YL GI SWG GCARP + GVYT VS + DW+K+
Sbjct: 189 SGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 21/155 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ FN+ V+PI LP G T T DV +++GWG SEGG+ P
Sbjct: 101 KLSGSLTFNDNVAPIALPEQGHTATGDV----------------IVTGWGTTSEGGNTPD 144
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ VPL E+CR Y ++ + +C G +GG DSCQGDSGGPLA G
Sbjct: 145 VLQKVTVPLVSDEDCRADYG----ADEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTG 199
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
YL GI SWG GCARP + GVYT VS + DW+K+
Sbjct: 200 STYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 12 PRQLHHQLFIILLR---RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
P Q H +++ TSEGG+ P +LQ VPL E+CR Y
Sbjct: 118 PEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY 163
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 105/194 (54%), Gaps = 11/194 (5%)
Query: 192 GCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRP 251
G D + +Y+ + SD K +++ + E I Y S +DIAL++L P
Sbjct: 48 GLPLQDVWRIYSGILNLSDITKDTPFSQIK-----EIIIHQNYKVSEGNHDIALIKLQAP 102
Query: 252 FKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSY 310
+ EF PI LP+ G T T ++GWG E G + +ILQ +PL EEC++ Y
Sbjct: 103 LNYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY 162
Query: 311 AVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDF 370
+ Q VC G K+GG D+C+GDSGGPL C +G + L GITSWG GCAR +
Sbjct: 163 Q----DYKITQRMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQ 217
Query: 371 YGVYTLVSCYSDWV 384
GVYT V+ Y DW+
Sbjct: 218 PGVYTKVAEYMDWI 231
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 87/160 (54%), Gaps = 19/160 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A +L P + EF PI LP+ G T T + W ++GWG
Sbjct: 91 NHDIALIKLQAPLNYTEFQKPISLPSKGDTSTI---YTNCW-----------VTGWGFSK 136
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
E G + +ILQ +PL EEC++ Y + Q VC G K+GG D+C+GDSGGPL
Sbjct: 137 EKGEIQNILQKVNIPLVTNEECQKRYQ----DYKITQRMVCAGYKEGGKDACKGDSGGPL 192
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C +G + L GITSWG GCAR + GVYT V+ Y DW+
Sbjct: 193 VCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 231
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELTR 63
+ E G + +ILQ +PL EEC++ Y Y++T+
Sbjct: 135 SKEKGEIQNILQKVNIPLVTNEECQKRY--QDYKITQ 169
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 11/194 (5%)
Query: 192 GCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRP 251
G D + +Y+ + SD K +++ + E I Y S +DIAL++L P
Sbjct: 48 GLPLQDVWRIYSGILELSDITKDTPFSQIK-----EIIIHQNYKVSEGNHDIALIKLQAP 102
Query: 252 FKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSY 310
++ EF PI LP+ G T T ++GWG E G + +ILQ +PL EEC++ Y
Sbjct: 103 LEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY 162
Query: 311 AVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDF 370
+ Q VC G K+GG D+C+GDSGGPL C +G + L GITSWG GCAR +
Sbjct: 163 Q----DYKITQRMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQ 217
Query: 371 YGVYTLVSCYSDWV 384
GVYT V+ Y DW+
Sbjct: 218 PGVYTKVAEYMDWI 231
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A +L P ++ EF PI LP+ G T T + W ++GWG
Sbjct: 91 NHDIALIKLQAPLEYTEFQKPISLPSKGDTSTI---YTNCW-----------VTGWGFSK 136
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
E G + +ILQ +PL EEC++ Y + Q VC G K+GG D+C+GDSGGPL
Sbjct: 137 EKGEIQNILQKVNIPLVTNEECQKRYQ----DYKITQRMVCAGYKEGGKDACKGDSGGPL 192
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C +G + L GITSWG GCAR + GVYT V+ Y DW+
Sbjct: 193 VCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 231
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELTR 63
+ E G + +ILQ +PL EEC++ Y Y++T+
Sbjct: 135 SKEKGEIQNILQKVNIPLVTNEECQKRY--QDYKITQ 169
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 221 EQRRRVER-IYTDFYDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADV 274
EQRR V R I Y+ ++ Y +DIALLEL P N +V+PIC+ + T +
Sbjct: 65 EQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGS 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SGWGR+ G ILQ +VPL + C RS YSN C G +GG D
Sbjct: 125 GYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFTIYSNMF-----CAGFHEGGKD 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
SCQGDSGGP + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 180 SCQGDSGGPHVTEV-EGTSFLTGIISWGEECAVKGKYGIYTKVSRYVNWIK 229
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 84/163 (51%), Gaps = 18/163 (11%)
Query: 51 RRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR 110
+ S+ +A EL P N +V+PIC+ + T ++ L G G +SGWGR
Sbjct: 85 KYSHDIALLELDEPLTLNSYVTPICIADKEYT---NIFLKFG---------SGYVSGWGR 132
Query: 111 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
+ G ILQ +VPL + C RS YSN C G +GG DSCQGDSGG
Sbjct: 133 VFNRGRSATILQYLKVPLVDRATCLRSTKFTIYSNMF-----CAGFHEGGKDSCQGDSGG 187
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
P + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 188 PHVTEV-EGTSFLTGIISWGEECAVKGKYGIYTKVSRYVNWIK 229
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 221 EQRRRVERIYTDF-YDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADV 274
EQ+R V RI Y+ +I Y +DIALLEL P N +V+PIC+ + T +
Sbjct: 65 EQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGS 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SGWGR+ G +LQ VPL + C RS Y+N C G +GG D
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMF-----CAGFHEGGRD 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
SCQGDSGGP + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 180 SCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 51 RRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR 110
+ ++ +A EL P N +V+PIC+ + T ++ L G G +SGWGR
Sbjct: 85 KYNHDIALLELDEPLVLNSYVTPICIADKEYT---NIFLKFG---------SGYVSGWGR 132
Query: 111 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
+ G +LQ VPL + C RS Y+N C G +GG DSCQGDSGG
Sbjct: 133 VFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMF-----CAGFHEGGRDSCQGDSGG 187
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
P + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 188 PHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 221 EQRRRVERIYTDF-YDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADV 274
EQ+R V RI Y+ +I Y +DIALLEL P N +V+PIC+ + T +
Sbjct: 65 EQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGS 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SGWGR+ G +LQ VPL + C RS Y+N C G +GG D
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMF-----CAGFHEGGRD 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
SCQGD+GGP + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 180 SCQGDAGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 51 RRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR 110
+ ++ +A EL P N +V+PIC+ + T ++ L G G +SGWGR
Sbjct: 85 KYNHDIALLELDEPLVLNSYVTPICIADKEYT---NIFLKFG---------SGYVSGWGR 132
Query: 111 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
+ G +LQ VPL + C RS Y+N C G +GG DSCQGD+GG
Sbjct: 133 VFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMF-----CAGFHEGGRDSCQGDAGG 187
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
P + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 188 PHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 221 EQRRRVERIYTDF-YDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADV 274
EQ+R V RI Y+ +I Y +DIALLEL P N +V+PIC+ + T +
Sbjct: 65 EQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGS 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SGWGR+ G +LQ VPL + C RS +N C G +GG D
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMF-----CAGFHEGGRD 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
SCQGDSGGP + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 180 SCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A EL P N +V+PIC+ + T ++ L G G +SGWGR+
Sbjct: 87 NHDIALLELDEPLVLNSYVTPICIADKEYT---NIFLKFG---------SGYVSGWGRVF 134
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
G +LQ VPL + C RS +N C G +GG DSCQGDSGGP
Sbjct: 135 HKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMF-----CAGFHEGGRDSCQGDSGGPH 189
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
+ +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 190 VTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 221 EQRRRVERIYTDF-YDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADV 274
EQ+R V RI ++ +I Y +DIALLEL P N +V+PIC+ + T +
Sbjct: 65 EQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGS 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SGWGR+ G +LQ VPL + C RS +N C G +GG D
Sbjct: 125 GYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMF-----CAGFHEGGRD 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
SCQGDSGGP + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 180 SCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A EL P N +V+PIC+ + T ++ L G G +SGWGR+
Sbjct: 87 NHDIALLELDEPLVLNSYVTPICIADKEYT---NIFLKFG---------SGYVSGWGRVF 134
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
G +LQ VPL + C RS +N C G +GG DSCQGDSGGP
Sbjct: 135 HKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMF-----CAGFHEGGRDSCQGDSGGPH 189
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
+ +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 190 VTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 221 EQRRRVERIYTDF-YDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADV 274
EQ+R V RI ++ +I Y +DIALLEL P N +V+PIC+ + T +
Sbjct: 65 EQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGS 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SGWGR+ G +LQ VPL + C RS +N C G +GG D
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMF-----CAGFHEGGRD 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
SCQGDSGGP + +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 180 SCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A EL P N +V+PIC+ + T ++ L G G +SGWGR+
Sbjct: 87 NHDIALLELDEPLVLNSYVTPICIADKEYT---NIFLKFG---------SGYVSGWGRVF 134
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
G +LQ VPL + C RS +N C G +GG DSCQGDSGGP
Sbjct: 135 HKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMF-----CAGFHEGGRDSCQGDSGGPH 189
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
+ +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 190 VTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 222 QRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISG 279
Q RR++RI + F++ + DIALLEL +P +++ V PICLP+ A + ++G
Sbjct: 76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTG 135
Query: 280 WGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
WG GG+ ILQ E+ + + C + +C G GG+DSCQGD
Sbjct: 136 WGHTQYGGTGALILQKGEIRVIQQTTCENLLP-----QQITPRMMCVGFLSGGVDSCQGD 190
Query: 340 SGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
SGGPL+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 191 SGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
Y +A EL +P +++ V PICLP+ A + ++GWG
Sbjct: 95 DYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAI--------------WVTGWGHTQ 140
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
GG+ ILQ E+ + + C + +C G GG+DSCQGDSGGPL
Sbjct: 141 YGGTGALILQKGEIRVIQQTTCENLLP-----QQITPRMMCVGFLSGGVDSCQGDSGGPL 195
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 196 SSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 222 QRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISG 279
Q RR++RI + F++ + DIALLEL +P +++ V PICLP+ A + ++G
Sbjct: 76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTG 135
Query: 280 WGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
WG GG+ ILQ E+ + + C + +C G GG+DSCQGD
Sbjct: 136 WGHTQYGGTGALILQKGEIRVINQTTCENLLP-----QQITPRMMCVGFLSGGVDSCQGD 190
Query: 340 SGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
SGGPL+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 191 SGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
Y +A EL +P +++ V PICLP+ A + ++GWG
Sbjct: 95 DYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAI--------------WVTGWGHTQ 140
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
GG+ ILQ E+ + + C + +C G GG+DSCQGDSGGPL
Sbjct: 141 YGGTGALILQKGEIRVINQTTCENLLP-----QQITPRMMCVGFLSGGVDSCQGDSGGPL 195
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 196 SSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSL--PHILQAA 296
+ DIALL+L+RP F+ ++ PI LP + + ++GWG ++ SL P LQ
Sbjct: 88 QGDIALLQLSRPITFSRYIRPISLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQL 147
Query: 297 EVPLTPKEECRRSYAVAGYS---NYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
EVPL +E C Y + +++ + VC G +GG D+CQGDSGGPL+CP+ +G +
Sbjct: 148 EVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLW 206
Query: 354 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
YL GI SWG C + GVYTL S Y+ W++S
Sbjct: 207 YLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 20/164 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L+RP F+ ++ PI LP + + ++GWG ++
Sbjct: 91 IALLQLSRPITFSRYIRPISLPAANASFPNGLHCT--------------VTGWGHVAPSV 136
Query: 116 SL--PHILQAAEVPLTPKEECRRSYAVAGYS---NYLNQCQVCTGTKQGGLDSCQGDSGG 170
SL P LQ EVPL +E C Y + +++ + VC G +GG D+CQGDSGG
Sbjct: 137 SLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGG 196
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
PL+CP+ +G +YL GI SWG C + GVYTL S Y+ W++S
Sbjct: 197 PLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSL--PHILQAA 296
+ DIALL+L+RP F+ ++ PI LP + + ++GWG ++ SL P LQ
Sbjct: 88 QGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQL 147
Query: 297 EVPLTPKEECRRSYAVAGYS---NYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
EVPL +E C Y + +++ + VC G +GG D+CQGDSGGPL+CP+ +G +
Sbjct: 148 EVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLW 206
Query: 354 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
YL GI SWG C + GVYTL S Y+ W++S
Sbjct: 207 YLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 20/164 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L+RP F+ ++ PI LP A +G ++GWG ++
Sbjct: 91 IALLQLSRPITFSRYIRPISLP------AAQASFPNGLH--------CTVTGWGHVAPSV 136
Query: 116 SL--PHILQAAEVPLTPKEECRRSYAVAGYS---NYLNQCQVCTGTKQGGLDSCQGDSGG 170
SL P LQ EVPL +E C Y + +++ + VC G +GG D+CQGDSGG
Sbjct: 137 SLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGG 196
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
PL+CP+ +G +YL GI SWG C + GVYTL S Y+ W++S
Sbjct: 197 PLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSL--PHILQAA 296
+ DIALL+L+RP F+ ++ PI LP + + ++GWG ++ SL P LQ
Sbjct: 88 QGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQL 147
Query: 297 EVPLTPKEECRRSYAVAGYS---NYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
EVPL +E C Y + +++ + VC G +GG D+CQGDSGGPL+CP+ +G +
Sbjct: 148 EVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLW 206
Query: 354 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
YL GI SWG C + GVYTL S Y+ W++S
Sbjct: 207 YLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 20/164 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L+RP F+ ++ PI LP A +G ++GWG ++
Sbjct: 91 IALLQLSRPITFSRYIRPISLP------AAQASFPNGLH--------CTVTGWGHVAPSV 136
Query: 116 SL--PHILQAAEVPLTPKEECRRSYAVAGYS---NYLNQCQVCTGTKQGGLDSCQGDSGG 170
SL P LQ EVPL +E C Y + +++ + VC G +GG D+CQGDSGG
Sbjct: 137 SLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGG 196
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
PL+CP+ +G +YL GI SWG C + GVYTL S Y+ W++S
Sbjct: 197 PLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ Y NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 91/188 (48%), Gaps = 30/188 (15%)
Query: 35 HILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 92
+ AA++ P + R +Y + +L+ P K N V+ + LP+
Sbjct: 63 QFVNAAKIIKHPNFD-RETYNNDIMLIKLSSPVKLNARVATVALPS-------------- 107
Query: 93 WGRLSEGADVGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 151
+ LISGWG LS G + P +LQ + PL P+ +C SY N
Sbjct: 108 --SCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----M 160
Query: 152 VCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDW 211
VC G +GG DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDW 215
Query: 212 VKSILYAR 219
++ + A
Sbjct: 216 IQDTIAAN 223
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 212 VKSILYARHEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTV 270
+ S L + + R +++I + Y+K NDIA++ L + +++ PICLP
Sbjct: 61 MASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVF 120
Query: 271 T-ADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTK 329
+ I+GWG L GS +LQ A+VPL E+C++ + Y+ + + VC G +
Sbjct: 121 PPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQ--MPEYN--ITENMVCAGYE 176
Query: 330 QGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILY 389
GG+DSCQGDSGGPL C + R+ L G+TS+G CA P+ GVY V +++W++S L+
Sbjct: 177 AGGVDSCQGDSGGPLMCQ-ENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH 235
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 19/167 (11%)
Query: 51 RRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR 110
R++ +A L + +++ PICLP GR+ I+GWG
Sbjct: 88 RKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPP--------GRICS------IAGWGA 133
Query: 111 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
L GS +LQ A+VPL E+C++ + Y+ + + VC G + GG+DSCQGDSGG
Sbjct: 134 LIYQGSTADVLQEADVPLLSNEKCQQQ--MPEYN--ITENMVCAGYEAGGVDSCQGDSGG 189
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILY 217
PL C + R+ L G+TS+G CA P+ GVY V +++W++S L+
Sbjct: 190 PLMCQ-ENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH 235
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 78 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAGTQ 137
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 138 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 191
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 192 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 245
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 111 KLSSPVKLNAHVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 154
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 155 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 206
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 207 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 245
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 222 QRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISG 279
Q RR++RI + F++ + DIALLEL +P +++ V PI LP+ A + ++G
Sbjct: 76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTG 135
Query: 280 WGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
WG GG+ ILQ E+ + + C + +C G GG+DSCQGD
Sbjct: 136 WGHTQYGGTGALILQKGEIRVINQTTCENLLP-----QQITPRMMCVGFLSGGVDSCQGD 190
Query: 340 SGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
SGGPL+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 191 SGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
Y +A EL +P +++ V PI LP+ A + ++GWG
Sbjct: 95 DYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAI--------------WVTGWGHTQ 140
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
GG+ ILQ E+ + + C + +C G GG+DSCQGDSGGPL
Sbjct: 141 YGGTGALILQKGEIRVINQTTCENLLP-----QQITPRMMCVGFLSGGVDSCQGDSGGPL 195
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 196 SSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIK 236
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ I LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ I LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATIALPS----------------SCAPAGTQCLISGWGHTLSSGVNHP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ Y NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C S + N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
D+CQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDACQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 91/188 (48%), Gaps = 30/188 (15%)
Query: 35 HILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 92
+ AA++ P + R +Y + +L+ P K N V+ + LP+
Sbjct: 63 QFVNAAKIIKHPNFD-RETYNNDIMLIKLSSPVKLNARVATVALPS-------------- 107
Query: 93 WGRLSEGADVGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 151
+ LISGWG LS G + P +LQ + PL P+ +C S + N
Sbjct: 108 --SCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDN-----M 160
Query: 152 VCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDW 211
VC G +GG D+CQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW
Sbjct: 161 VCVGFLEGGKDACQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDW 215
Query: 212 VKSILYAR 219
++ + A
Sbjct: 216 IQDTIAAN 223
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGHTLSSGVNHP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 66 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 125
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 126 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 179
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 180 KDSCQGDSGGPVVC-----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 233
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 99 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 142
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C
Sbjct: 143 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---- 193
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 194 -NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 233
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 64 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 123
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 124 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 177
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 178 KDSCQGDSGGPVVC-----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 97 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 140
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C
Sbjct: 141 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---- 191
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 192 -NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGD+GGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDAGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGD+GGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDAGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 66 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 125
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 126 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 179
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGD+GGP+ C L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 180 KDSCQGDAGGPVVC-----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 233
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 99 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 142
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGD+GGP+ C
Sbjct: 143 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDAGGPVVC---- 193
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 194 -NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 233
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 212 VKSILYARHEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----- 265
+KS L + R ++ I + Y++ NDIA++ L + +++ PI LP
Sbjct: 61 MKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVF 120
Query: 266 -PGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQV 324
PG + I+GWG + G+ ILQ A+VPL E C++ + Y+ + + +
Sbjct: 121 PPGRNCS-----IAGWGTVVYQGTTADILQEADVPLLSNERCQQQ--MPEYN--ITENMI 171
Query: 325 CTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C G ++GG+DSCQGDSGGPL C + R++L G+TS+G CA P+ GVY VS +++W+
Sbjct: 172 CAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWI 230
Query: 385 KSILY 389
+S L+
Sbjct: 231 QSFLH 235
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 22/187 (11%)
Query: 32 SLPHILQAAEVPLTPKEECRR-SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLI 90
++P ++ E+ + P RR +A L + +++ PI LP
Sbjct: 70 TVPRLID--EIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPP----- 122
Query: 91 SGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC 150
GR I+GWG + G+ ILQ A+VPL E C++ + Y+ + +
Sbjct: 123 ---GRNCS------IAGWGTVVYQGTTADILQEADVPLLSNERCQQQ--MPEYN--ITEN 169
Query: 151 QVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 210
+C G ++GG+DSCQGDSGGPL C + R++L G+TS+G CA P+ GVY VS +++
Sbjct: 170 MICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTE 228
Query: 211 WVKSILY 217
W++S L+
Sbjct: 229 WIQSFLH 235
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI WG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVEWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI WG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVEWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI WG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVKWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI WG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVKWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 64 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 123
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +L+ + PL P+ +C SY N VC G +GG
Sbjct: 124 C-LISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 177
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 178 KDSCQGDSGGPVVC-----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 97 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 140
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+L+ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C
Sbjct: 141 DLLKCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---- 191
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 192 -NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 64 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 123
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 124 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 177
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQG+SGGP+ C L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 178 KDSCQGNSGGPVVC-----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 97 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 140
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQG+SGGP+ C
Sbjct: 141 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGNSGGPVVC---- 191
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 192 -NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ N+I L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGD GGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDCGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGD GGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDCGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ N+I L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KDSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG DSCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKDSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
SCQGDSGGP+ C +G L GI SWG GCA PD GVYT V Y DW++ + A+
Sbjct: 170 KSSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG SCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKSSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD GVYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 223
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 6/173 (3%)
Query: 221 EQRRRVER-IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLT----VTADVG 275
EQ RRV + I Y +DIALL L +P + V P+CLP +
Sbjct: 68 EQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFS 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
L+SGWG+L + G+ +LQ VP ++C + G S + + C G G DS
Sbjct: 128 LVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDS 187
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
C+GDSGGP A G +YL GI SWG GCA +GVYT VS Y +W++ ++
Sbjct: 188 CKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A L +P + V P+CLP + R L+SGWG+L
Sbjct: 88 NHDIALLRLHQPVVLTDHVVPLCLPERTFS-----------ERTLAFVRFSLVSGWGQLL 136
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
+ G+ +LQ VP ++C + G S + + C G G DSC+GDSGGP
Sbjct: 137 DRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPH 196
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQR 223
A G +YL GI SWG GCA +GVYT VS Y +W++ ++ R E R
Sbjct: 197 ATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM--RSEPR 244
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNP----GLTVTADVGLISGWGRLSEGGSL 289
+ K Y DIA+L L P +F V+P CLP +T G++SG+GR E G L
Sbjct: 80 FVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKGRL 139
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
L+ EVP + C+ S + N C G D+CQGDSGGP
Sbjct: 140 SSTLKMLEVPYVDRSTCKLSSSFTITPNMF-----CAGYDTQPEDACQGDSGGPHVTRFK 194
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYASVSA 394
D Y++ GI SWG GCAR +GVYT VS + W+ I+ A A
Sbjct: 195 D-TYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWIDKIMKARAGA 238
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 28 SEGGSLPHILQAAEVPLTPKEE--CRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
EG + H EV +T K + +Y +A L P +F V+P CLP
Sbjct: 62 EEGNEMAH-----EVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDW-- 114
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 143
A+ L++ G++SG+GR E G L L+ EVP + C+ S +
Sbjct: 115 -AEATLMT--------QKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLSSSFTIT 165
Query: 144 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYT 203
N C G D+CQGDSGGP D Y++ GI SWG GCAR +GVYT
Sbjct: 166 PNMF-----CAGYDTQPEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKFGVYT 219
Query: 204 LVSCYSDWVKSILYAR 219
VS + W+ I+ AR
Sbjct: 220 KVSNFLKWIDKIMKAR 235
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLT-VTADVGLISGWGRLSEGGSLPHILQAAEVP 299
NDIAL+ L+ P E++ P+CLP G V + ++GWG G +LQ A VP
Sbjct: 211 NDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVP 270
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG---RYYLC 356
+ + C Y N + C G +GG+D+CQGDSGGP C R+ LC
Sbjct: 271 IISNDVCN---GADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLC 327
Query: 357 GITSWGVGCARPDFYGVYTLVSCYSDWV-KSILYASVSAKRVNQ 399
GI SWG GCA GVYT VS + +W+ ++I S ++ V Q
Sbjct: 328 GIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQ 371
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 42 VPLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGAD 101
+P S +A L+ P E++ P+CLP G L+ G
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA------LVDG--------K 244
Query: 102 VGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 161
+ ++GWG G +LQ A VP+ + C Y N + C G +GG+
Sbjct: 245 ICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCN---GADFYGNQIKPKMFCAGYPEGGI 301
Query: 162 DSCQGDSGGPLACPLPDGR---YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
D+CQGDSGGP C R + LCGI SWG GCA GVYT VS + +W+ +
Sbjct: 302 DACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKT 361
Query: 219 RHEQRRRVERI 229
E V ++
Sbjct: 362 HSEASGMVTQL 372
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLT-VTADVGLISGWGRLSEGGSLPHILQAAEVP 299
NDIAL+ L+ P E++ P+CLP G V + ++GWG G +LQ A VP
Sbjct: 211 NDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVP 270
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG---RYYLC 356
+ + C Y N + C G +GG+D+CQGDSGGP C R+ LC
Sbjct: 271 IISNDVCN---GADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLC 327
Query: 357 GITSWGVGCARPDFYGVYTLVSCYSDWV-KSILYASVSAKRVNQ 399
GI SWG GCA GVYT VS + +W+ ++I S ++ V Q
Sbjct: 328 GIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQ 371
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 42 VPLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGAD 101
+P S +A L+ P E++ P+CLP G L+ G
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA------LVDG--------K 244
Query: 102 VGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 161
+ ++GWG G +LQ A VP+ + C Y N + C G +GG+
Sbjct: 245 ICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCN---GADFYGNQIKPKMFCAGYPEGGI 301
Query: 162 DSCQGDSGGPLACPLPDGR---YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
D+CQGDSGGP C R + LCGI SWG GCA GVYT VS + +W+ +
Sbjct: 302 DACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKT 361
Query: 219 RHEQRRRVERI 229
E V ++
Sbjct: 362 HSEASGMVTQL 372
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 84 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFIT 138
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 139 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 194
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ +L
Sbjct: 195 DSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVL 243
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 55 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 108
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 109 SPAVITDKVIPACLPSPNYMVADRTECFITGWGETQGTFGAGL----------------L 152
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGDSGGPL C D +Y
Sbjct: 153 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KY 208
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ +L
Sbjct: 209 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVL 243
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLT-VTADVGLISGWGRLSEGGSLPHILQAAEV 298
NDIAL+ L+ P E++ P+CLP G V + ++GWG G +LQ A V
Sbjct: 93 SNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARV 152
Query: 299 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG---RYYL 355
P+ + C Y N + C G +GG+D+CQGDSGGP C R+ L
Sbjct: 153 PIISNDVCN---GADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRL 209
Query: 356 CGITSWGVGCARPDFYGVYTLVSCYSDWV-KSILYASVSAKRVNQ 399
CGI SWG GCA GVYT VS + +W+ ++I S ++ V Q
Sbjct: 210 CGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQ 254
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 36 ILQAAEVPLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGR 95
+ +P S +A L+ P E++ P+CLP G L+ G
Sbjct: 76 VYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA------LVDG--- 126
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 155
+ ++GWG G +LQ A VP+ + C Y N + C G
Sbjct: 127 -----KICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCN---GADFYGNQIKPKMFCAG 178
Query: 156 TKQGGLDSCQGDSGGPLACPLPDGR---YYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
+GG+D+CQGDSGGP C R + LCGI SWG GCA GVYT VS + +W+
Sbjct: 179 YPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 238
Query: 213 KSILYARHEQRRRVERI 229
+ E V ++
Sbjct: 239 FQAIKTHSEASGMVTQL 255
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHIL 293
YD + ++ND+AL+EL N FV PICLP G + ++SGWG+ P L
Sbjct: 96 YDPNTFENDVALVELLESPVLNAFVMPICLPE-GPQQEGAMVIVSGWGK-QFLQRFPETL 153
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD-GR 352
E+P+ C+++YA + + +C G K+GG D+C GDSGGP+ + G+
Sbjct: 154 MEIEIPIVDHSTCQKAYAP--LKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQ 211
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
+YL G SWG C + D YGVY+ + DW++ +
Sbjct: 212 WYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
VA EL N FV PICLP G EGA V ++SGWG+
Sbjct: 105 VALVELLESPVLNAFVMPICLPE---------------GPQQEGAMV-IVSGWGK-QFLQ 147
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
P L E+P+ C+++YA + + +C G K+GG D+C GDSGGP+
Sbjct: 148 RFPETLMEIEIPIVDHSTCQKAYAP--LKKKVTRDMICAGEKEGGKDACAGDSGGPMVTL 205
Query: 176 LPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARH 220
+ G++YL G SWG C + D YGVY+ + DW++ + R+
Sbjct: 206 NRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTGVRN 251
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 88 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 142
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 143 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 198
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 199 DSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 59 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 112
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 113 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 156
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGDSGGPL C D +Y
Sbjct: 157 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KY 212
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 213 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 85 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 139
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 140 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 195
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 196 DSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 56 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 109
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 110 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 153
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGDSGGPL C D +Y
Sbjct: 154 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KY 209
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 210 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 214 SILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
++L + + I +D+ NDI L++L+ P K N V+ + LP+
Sbjct: 56 NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQ 115
Query: 274 VGLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
LISGWG LS G + P +LQ + PL P+ +C SY N VC G +GG
Sbjct: 116 C-LISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGG 169
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
SCQGDSGGP+ C +G L GI SWG GCA PD VYT V Y DW++ + A+
Sbjct: 170 KGSCQGDSGGPVVC---NGE--LQGIVSWGYGCALPDNPDVYTKVCNYVDWIQDTIAAN 223
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGR-LSEGGSLP 118
+L+ P K N V+ + LP+ + LISGWG LS G + P
Sbjct: 89 KLSSPVKLNARVATVALPS----------------SCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+LQ + PL P+ +C SY N VC G +GG SCQGDSGGP+ C +
Sbjct: 133 DLLQCLDAPLLPQADCEASYPGKITDN-----MVCVGFLEGGKGSCQGDSGGPVVC---N 184
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G L GI SWG GCA PD VYT V Y DW++ + A
Sbjct: 185 GE--LQGIVSWGYGCALPDNPDVYTKVCNYVDWIQDTIAAN 223
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PICLP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PICLP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYTDSQRPICLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHIL 293
YD + ++ND+AL+EL N FV PICLP G + ++SGWG+ P L
Sbjct: 251 YDPNTFENDVALVELLESPVLNAFVMPICLPE-GPQQEGAMVIVSGWGK-QFLQRFPETL 308
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD-GR 352
E+P+ C+++YA + + +C G K+GG D+C GDSGGP+ + G+
Sbjct: 309 MEIEIPIVDHSTCQKAYA--PLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQ 366
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
+YL G SWG C + D YGVY+ + DW++ +
Sbjct: 367 WYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 401
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
VA EL N FV PICLP G EGA V ++SGWG+
Sbjct: 260 VALVELLESPVLNAFVMPICLPE---------------GPQQEGAMV-IVSGWGK-QFLQ 302
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
P L E+P+ C+++YA + + +C G K+GG D+C GDSGGP+
Sbjct: 303 RFPETLMEIEIPIVDHSTCQKAYA--PLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTL 360
Query: 176 LPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARH 220
+ G++YL G SWG C + D YGVY+ + DW++ + R+
Sbjct: 361 NRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTGVRN 406
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PICLP+ G V ++GWG +
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRAL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PICLP+ G +V W ++GWG +
Sbjct: 92 YDIALLKLETTVNYADSQRPICLPSKG---DRNVIYTDCW-----------VTGWGYRAL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 85 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 139
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 140 GWGE-TQGTFGAGLLMEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 195
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 196 DSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 56 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 109
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 110 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 153
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
A++P+ + C R + G + ++C G GG DSCQGDSGGPL C D +Y
Sbjct: 154 MEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KY 209
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 210 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PICLP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PICLP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYADSQRPICLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PICLP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PICLP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYADSQRPICLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 88 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 142
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 143 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 198
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
D+GGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 199 DAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 59 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 112
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 113 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 156
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGD+GGPL C D +Y
Sbjct: 157 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KY 212
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 213 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 85 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 139
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 140 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 195
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
D+GGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 196 DAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 56 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 109
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 110 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 153
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGD+GGPL C D +Y
Sbjct: 154 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KY 209
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 210 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 87 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 141
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 142 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 197
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
D+GGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 198 DAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 246
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 58 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 111
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 112 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 155
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGD+GGPL C D +Y
Sbjct: 156 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KY 211
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 212 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 246
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 86 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 140
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 141 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 196
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
D+GGPL C D +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 197 DAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 245
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR ++ ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 57 TAAHCLEKSPRPSSYK---VILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 110
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 111 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 154
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGD+GGPL C D +Y
Sbjct: 155 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KY 210
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 211 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 245
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 87/173 (50%), Gaps = 6/173 (3%)
Query: 221 EQRRRVER-IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLT----VTADVG 275
EQ RRV + I Y +DIALL L +P + V P+CLP +
Sbjct: 68 EQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFS 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
L+SGWG+L + G+ L VP ++C + G S + + C G G DS
Sbjct: 128 LVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDS 187
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
C+GDSGGP A G +YL GI SWG GCA +GVYT VS Y +W++ ++
Sbjct: 188 CKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
++ +A L +P + V P+CLP + R L+SGWG+L
Sbjct: 88 NHDIALLRLHQPVVLTDHVVPLCLPERTFS-----------ERTLAFVRFSLVSGWGQLL 136
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
+ G+ L VP ++C + G S + + C G G DSC+GDSGGP
Sbjct: 137 DRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPH 196
Query: 173 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQR 223
A G +YL GI SWG GCA +GVYT VS Y +W++ ++ R E R
Sbjct: 197 ATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM--RSEPR 244
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + K DIALL+L+ P + V P CLP+P V I+
Sbjct: 629 HVQEIEVSRLFLEPTRK-----DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 683
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG ++G +L+ A++P+ + C R + G + ++C G GG DSCQG
Sbjct: 684 GWGE-TQGTFGAGLLKEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQG 739
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGPL C +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 740 DSGGPLVC-FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Query: 3 TIQDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
T +E +PR + ++L E PH+ Q EV E R+ A+ +L+
Sbjct: 600 TAAHCLEKSPRP---SSYKVILGAHQEVNLEPHV-QEIEVSRLFLEPTRKDIAL--LKLS 653
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
P + V P CLP+P V I+GWG GL L
Sbjct: 654 SPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL----------------L 697
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A++P+ + C R + G + ++C G GG DSCQGDSGGPL C +Y
Sbjct: 698 KEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVC-FEKDKY 753
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 754 ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PICLP+ G V ++GWG
Sbjct: 465 EIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKL 524
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 525 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 580
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 581 CK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 618
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PICLP+ G +V W ++GWG
Sbjct: 479 YDIALLKLETTVNYTDSQRPICLPSKG---DRNVIYTDCW-----------VTGWGYRKL 524
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 525 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 580
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 581 CK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 618
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PI LP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PI LP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYTDSQRPISLPSKG---ERNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PI LP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PI LP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYTDSQRPISLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PI LP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PI LP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYTDSQRPISLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PI LP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PI LP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYADSQRPISLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGEQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWV 212
+ + W+
Sbjct: 222 TAFLKWI 228
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PI LP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PI LP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYADSQRPISLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGEQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG-LTVTADVGLISGWGRLSE 285
E I D Y + DIALL+L + + PI LP+ G V ++GWG
Sbjct: 78 EIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKL 137
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 19/159 (11%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
Y +A +L + + PI LP+ G +V W ++GWG
Sbjct: 92 YDIALLKLETTVNYADSQRPISLPSKG---DRNVIYTDCW-----------VTGWGYRKL 137
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+ + LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYR----GHKITHKMICAGYREGGKDACKGDSGGPLS 193
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 194 CKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 90 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 149
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 150 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 204
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 205 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 243
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 77 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 130
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 131 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 177
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 178 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 236
Query: 206 SCYSDWV 212
+ + W+
Sbjct: 237 TAFLKWI 243
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWV 212
+ + W+
Sbjct: 222 TAFLKWI 228
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWV 212
+ + W+
Sbjct: 222 TAFLKWI 228
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGDSGGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLS 284
I + + K Y DIA+L L P F V+P CLP +T G++SG+GR
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134
Query: 285 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
E G L+ EVP + C+ S S + Q C G D+CQGD+GGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDAGGPH 189
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
D Y++ GI SWG GCAR YG+YT V+ + W+
Sbjct: 190 VTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTA 85
EGG H EV + + +Y +A L P F V+P CLP A
Sbjct: 62 EEGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDW---A 115
Query: 86 DVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSN 145
+ L++ G++SG+GR E G L+ EVP + C+ S S
Sbjct: 116 ESTLMT--------QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-----SF 162
Query: 146 YLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLV 205
+ Q C G D+CQGD+GGP D Y++ GI SWG GCAR YG+YT V
Sbjct: 163 IITQNMFCAGYDTKQEDACQGDAGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKV 221
Query: 206 SCYSDWVKSILYAR 219
+ + W+ + R
Sbjct: 222 TAFLKWIDRSMKTR 235
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 61 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LIS 119
Query: 279 GWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG S G S P +LQ + P+ C+ SY N +C G QGG DSCQ
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGN-----MICVGFLQGGKDSCQ 174
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 175 GDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N V+ + LP + LISGWG S G S P
Sbjct: 89 KLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWGNTK--------------SSGSSYPS 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ + P+ C+ SY N +C G QGG DSCQGDSGGP+ C +G
Sbjct: 134 LLQCLKAPVLSNSSCKSSYPGQITGN-----MICVGFLQGGKDSCQGDSGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 186 Q--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 222 QRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPN--PGLTVTADVGLIS 278
Q R VE+I + Y S NDIAL+++T P F+ P CLP G ++
Sbjct: 80 QERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVA 139
Query: 279 GWGRLSEGGSLPH-ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG L E +LQ A V L C + Y+ + VC G +G +D+CQ
Sbjct: 140 GWGFLQENARRTSPMLQEARVDLIDLGLCN---STRWYNGRIRSTNVCAGYPEGKIDTCQ 196
Query: 338 GDSGGPLACP-LPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C + Y + GITSWGVGCAR GVYT Y +W+ S +
Sbjct: 197 GDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
+A ++T P F+ P CLP G ++GWG L E A R S
Sbjct: 102 IALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENAR--------RTSP 153
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+LQ A V L C + Y+ + VC G +G +D+CQGDSGGPL
Sbjct: 154 ------MLQEARVDLIDLGLCN---STRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLM 204
Query: 174 CP-LPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
C + Y + GITSWGVGCAR GVYT Y +W+ S +
Sbjct: 205 CKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 201 VYTLVSCYSDWVKSILYARHEQRRRVERIYTDF----------YDKSIYKNDIALLELTR 250
V T C + K ++ RR E+ D Y KS NDIALL L +
Sbjct: 37 VLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQ 96
Query: 251 PFKFNEFVSPICLPNPGL-----TVTADVGLISGWG----RLSEGG-SLPHILQAAEVPL 300
P ++ + PICLP+ GL L++GWG R E + +L ++P+
Sbjct: 97 PATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPV 156
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
P EC SN +++ +C G D+C+GDSGGP+ G ++L G+ S
Sbjct: 157 VPHNECSEVM-----SNMVSENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVS 210
Query: 361 WGVGCARPDFYGVYTLVSCYSDWV 384
WG GC YGVYT VS Y DW+
Sbjct: 211 WGEGCGLLHNYGVYTKVSRYLDWI 234
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 21/162 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWG----RL 111
+A L +P ++ + PICLP+ GL L++ L++GWG R
Sbjct: 89 IALLHLAQPATLSQTIVPICLPDSGLAER----------ELNQAGQETLVTGWGYHSSRE 138
Query: 112 SEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
E + +L ++P+ P EC SN +++ +C G D+C+GDSGG
Sbjct: 139 KEAKRNRTFVLNFIKIPVVPHNECSEVM-----SNMVSENMLCAGILGDRQDACEGDSGG 193
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
P+ G ++L G+ SWG GC YGVYT VS Y DW+
Sbjct: 194 PMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 201 VYTLVSCYSDWVKSILYARHEQRRRVERIYTDF----------YDKSIYKNDIALLELTR 250
V T C + K ++ RR E+ D Y KS NDIALL L +
Sbjct: 37 VLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQ 96
Query: 251 PFKFNEFVSPICLPNPGL-----TVTADVGLISGWG----RLSEGG-SLPHILQAAEVPL 300
P ++ + PICLP+ GL L++GWG R E + +L ++P+
Sbjct: 97 PATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPV 156
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
P EC SN +++ +C G D+C+GDSGGP+ G ++L G+ S
Sbjct: 157 VPHNECSEVM-----SNMVSENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVS 210
Query: 361 WGVGCARPDFYGVYTLVSCYSDWV 384
WG GC YGVYT VS Y DW+
Sbjct: 211 WGEGCGLLHNYGVYTKVSRYLDWI 234
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 21/162 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWG----RL 111
+A L +P ++ + PICLP+ GL L++ L++GWG R
Sbjct: 89 IALLHLAQPATLSQTIVPICLPDSGLAER----------ELNQAGQETLVTGWGYHSSRE 138
Query: 112 SEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
E + +L ++P+ P EC SN +++ +C G D+C+GDSGG
Sbjct: 139 KEAKRNRTFVLNFIKIPVVPHNECSEVM-----SNMVSENMLCAGILGDRQDACEGDSGG 193
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
P+ G ++L G+ SWG GC YGVYT VS Y DW+
Sbjct: 194 PMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 61 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LIS 119
Query: 279 GWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG S G S P +LQ + P+ C+ SY N +C G +GG DSCQ
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQ 174
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 175 GDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N V+ + LP + LISGWG S G S P
Sbjct: 89 KLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWGNTK--------------SSGSSYPS 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ + P+ C+ SY N +C G +GG DSCQGDSGGP+ C +G
Sbjct: 134 LLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQGDSGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 186 Q--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 61 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LIS 119
Query: 279 GWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG S G S P +LQ + P+ C+ SY N +C G +GG DSCQ
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQ 174
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 175 GDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N V+ + LP + LISGWG S G S P
Sbjct: 89 KLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWGNTK--------------SSGSSYPS 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ + P+ C+ SY N +C G +GG DSCQGDSGGP+ C +G
Sbjct: 134 LLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQGDSGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 186 Q--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 69 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LIS 127
Query: 279 GWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG S G S P +LQ + P+ C+ SY N +C G +GG DSCQ
Sbjct: 128 GWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQ 182
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 183 GDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 231
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N V+ + LP + LISGWG S G S P
Sbjct: 97 KLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWGNTK--------------SSGSSYPS 141
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ + P+ C+ SY N +C G +GG DSCQGDSGGP+ C +G
Sbjct: 142 LLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQGDSGGPVVC---NG 193
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 194 Q--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 231
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 61 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LIS 119
Query: 279 GWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG S G S P +LQ + P+ C+ +Y N +C G +GG DSCQ
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPGQITGN-----MICVGFLEGGKDSCQ 174
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 175 GDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N V+ + LP + LISGWG S G S P
Sbjct: 89 KLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWGNTK--------------SSGSSYPS 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ + P+ C+ +Y N +C G +GG DSCQGDSGGP+ C +G
Sbjct: 134 LLQCLKAPVLSDSSCKSAYPGQITGN-----MICVGFLEGGKDSCQGDSGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 186 Q--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 222 QRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLP--NPGLTVTADVGLIS 278
Q R VE I + Y + NDIAL+++T P F+ P CLP G ++
Sbjct: 80 QERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVT 139
Query: 279 GWGRLSEGGSLPH-ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG L E G LQ A V L E C + Y+ + VC G +G +D+CQ
Sbjct: 140 GWGYLKEKGPRTSPTLQEARVALIDLELCN---STRWYNGRIRSTNVCAGYPRGKIDTCQ 196
Query: 338 GDSGGPLAC-PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
GDSGGPL C + + + GITSWGVGCAR GVYT Y +W+ S
Sbjct: 197 GDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIAS 246
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLP--NPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
+A ++T P F+ P CLP G ++GWG L E +
Sbjct: 102 IALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKE--------------K 147
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
G LQ A V L E C + Y+ + VC G +G +D+CQGDSGGPL
Sbjct: 148 GPRTSPTLQEARVALIDLELCN---STRWYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLM 204
Query: 174 C-PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
C + + + GITSWGVGCAR GVYT Y +W+ S
Sbjct: 205 CRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIAS 246
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 221 EQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT-ADVGLIS 278
+ +R + RI + Y + DI+L EL+ P + V +CLP+ DV ++
Sbjct: 64 KMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVT 123
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
G+G L G + L+ A+V L C A Y++ + +C G+ +G D+CQG
Sbjct: 124 GFGALKNDGYSQNHLRQAQVTLIDATTCNEPQA---YNDAITPRMLCAGSLEGKTDACQG 180
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
DSGGPL +YL GI SWG CA+P+ GVYT V+ DW+ S
Sbjct: 181 DSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITS 228
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 52 RSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRL 111
Y ++ EL+ P + V +CLP+ + DV ++G+G L
Sbjct: 83 HDYDISLAELSSPVPYTNAVHRVCLPDASYEF--------------QPGDVMFVTGFGAL 128
Query: 112 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
G + L+ A+V L C A Y++ + +C G+ +G D+CQGDSGGP
Sbjct: 129 KNDGYSQNHLRQAQVTLIDATTCNEPQA---YNDAITPRMLCAGSLEGKTDACQGDSGGP 185
Query: 172 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
L +YL GI SWG CA+P+ GVYT V+ DW+ S
Sbjct: 186 LVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITS 228
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRL-SEGG 287
I + + K Y DIA+L L P F V+P LP T LISGWG S G
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPT-APPATGTKCLISGWGNTASSGA 133
Query: 288 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 347
P LQ + P+ + +C SY SN C G +GG DSCQGDSGGP+ C
Sbjct: 134 DYPDELQCLDAPVLSQAKCEASYPGKITSNMF-----CVGFLEGGKDSCQGDSGGPVVC- 187
Query: 348 LPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+G+ L G+ SWG GCA+ + GVYT V Y W+K+ + A+
Sbjct: 188 --NGQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN 227
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 86/193 (44%), Gaps = 30/193 (15%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTVTAD 86
EGG H EV + + +Y +A L P F V+P LP T
Sbjct: 63 EGGEAVH---EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPT-APPATGT 118
Query: 87 VGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNY 146
LISGWG + S G P LQ + P+ + +C SY SN
Sbjct: 119 KCLISGWGNTA--------------SSGADYPDELQCLDAPVLSQAKCEASYPGKITSNM 164
Query: 147 LNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVS 206
C G +GG DSCQGDSGGP+ C +G+ L G+ SWG GCA+ + GVYT V
Sbjct: 165 F-----CVGFLEGGKDSCQGDSGGPVVC---NGQ--LQGVVSWGDGCAQKNKPGVYTKVY 214
Query: 207 CYSDWVKSILYAR 219
Y W+K+ + A
Sbjct: 215 NYVKWIKNTIAAN 227
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGF 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
TK+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N TK+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGFKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRK 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 6/158 (3%)
Query: 230 YTDFYDKSIYK-NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGG 287
+ D+ D S + +DIAL+ L R +F ++ P+CLP P V L + GWGR +E G
Sbjct: 120 HPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGR-TETG 178
Query: 288 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 347
I Q VP+ E+C +++ AG + Q+C G ++ DSC GDSGGPL
Sbjct: 179 QYSTIKQKLAVPVVHAEQCAKTFGAAGVR--VRSSQLCAGGEKAK-DSCGGDSGGPLLAE 235
Query: 348 LPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
+ +++L G+ S+G C + G+YT V Y DW++
Sbjct: 236 RANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIE 273
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 52 RSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRL 111
R + +A L R +F ++ P+CLP P V L + GWGR
Sbjct: 130 RYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLT--------------VVGWGR- 174
Query: 112 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+E G I Q VP+ E+C +++ AG + Q+C G ++ DSC GDSGGP
Sbjct: 175 TETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVR--VRSSQLCAGGEKAK-DSCGGDSGGP 231
Query: 172 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
L + +++L G+ S+G C + G+YT V Y DW++
Sbjct: 232 LLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIE 273
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 31/211 (14%)
Query: 208 YSDWVKSILYARHEQR-------------RRVERIYTDFYDKSIY-----------KNDI 243
Y +WV + +A +EQ+ +R+ YT + ++++ NDI
Sbjct: 30 YDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDI 89
Query: 244 ALLELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
AL++L N ++PICLP T D+G SGWG L++ G L L ++P+
Sbjct: 90 ALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPI 148
Query: 301 TPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG-RYYLCGI 358
++C +Y Y + +C G + GG DSC+GDSGG L + R+++ GI
Sbjct: 149 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGI 208
Query: 359 TSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
SWG + C YGVYT V Y W+++I+
Sbjct: 209 VSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
+A +L N ++PICLP T D+G SGWG L+
Sbjct: 89 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG----------------LT 132
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+ G L L ++P+ ++C +Y Y + +C G + GG DSC+GDSGG
Sbjct: 133 QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGA 192
Query: 172 LACPLPDG-RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L + R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 193 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 226 VERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSE 285
V+ I Y+ NDI L++L++P N +VS + LP+ + L+SGWG LS
Sbjct: 68 VKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPSS-CASSGTRCLVSGWGNLSG 126
Query: 286 GGS-LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 344
S P L+ ++P+ C +Y SN C G +GG DSCQGDSGGP+
Sbjct: 127 SSSNYPDTLRCLDLPILSSSSCNSAYPGQITSNMF-----CAGFMEGGKDSCQGDSGGPV 181
Query: 345 ACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
C +G+ L G+ SWG GCA+ + GVYT V Y W+ S +
Sbjct: 182 VC---NGQ--LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTM 220
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 26/183 (14%)
Query: 35 HILQAAEVPLTPKEECRR-SYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGW 93
+ + +V + P R + +L++P N +VS + LP+ + L+SGW
Sbjct: 63 QFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPSS-CASSGTRCLVSGW 121
Query: 94 GRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVC 153
G LS + + P L+ ++P+ C +Y SN C
Sbjct: 122 GNLSGSSS--------------NYPDTLRCLDLPILSSSSCNSAYPGQITSNMF-----C 162
Query: 154 TGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
G +GG DSCQGDSGGP+ C +G+ L G+ SWG GCA+ + GVYT V Y W+
Sbjct: 163 AGFMEGGKDSCQGDSGGPVVC---NGQ--LQGVVSWGYGCAQRNKPGVYTKVCNYRSWIS 217
Query: 214 SIL 216
S +
Sbjct: 218 STM 220
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 31/211 (14%)
Query: 208 YSDWVKSILYARHEQR-------------RRVERIYTDFYDKSIY-----------KNDI 243
Y +WV + +A +EQ+ +R+ YT + ++++ NDI
Sbjct: 116 YDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDI 175
Query: 244 ALLELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
AL++L N ++PICLP T D+G SGWG L++ G L L ++P+
Sbjct: 176 ALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPI 234
Query: 301 TPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG-RYYLCGI 358
++C +Y Y + +C G + GG DSC+GDSGG L + R+++ GI
Sbjct: 235 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGI 294
Query: 359 TSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
SWG + C YGVYT V Y W+++I+
Sbjct: 295 VSWGSMNCGEAGQYGVYTKVINYIPWIENII 325
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
+A +L N ++PICLP T D+G SGWG L+
Sbjct: 175 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG----------------LT 218
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+ G L L ++P+ ++C +Y Y + +C G + GG DSC+GDSGG
Sbjct: 219 QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGA 278
Query: 172 LACPLPDG-RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L + R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 279 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 325
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRL-SEGGSLPHI 292
YD+ NDI L++L+ N VS I LP T LISGWG S G P
Sbjct: 76 YDRKTLNNDIMLIKLSSRAVINARVSTISLPT-APPATGTKCLISGWGNTASSGADXPDE 134
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ + P+ + +C SY SN C G +GG DSCQGDSGGP+ C +G+
Sbjct: 135 LQCLDAPVLSQAKCEASYPGKITSNMF-----CVGFLEGGKDSCQGDSGGPVVC---NGQ 186
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
L G+ SWG GCA+ + GVYT V Y W+K+ + A+
Sbjct: 187 --LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN 223
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G P LQ + P+ + +C SY SN C G +GG D
Sbjct: 117 LISGWGNTASSGADXPDELQCLDAPVLSQAKCEASYPGKITSNMF-----CVGFLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C +G+ L G+ SWG GCA+ + GVYT V Y W+K+ + A
Sbjct: 172 SCQGDSGGPVVC---NGQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN 223
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Query: 193 CARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVERI-YTDFYDKSIYKNDIALLELTRP 251
C R Y + + DW+ L + V+RI + + Y+ Y+NDIAL+E+ +
Sbjct: 363 CLRASKTHRYQIWTTVVDWIHPDL--KRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKD 420
Query: 252 FKFNEF----VSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEEC 306
+ P C+P +P L D ++SGWGR + + LQ EV L C
Sbjct: 421 GNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERV-FSLQWGEVKLISN--C 477
Query: 307 RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCA 366
+ Y Y + C GT G +D+C+GDSGGPL C + Y+ G+ SWG C
Sbjct: 478 SKFYGNRFYEKEME----CAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCG 533
Query: 367 RPDFYGVYTLVSCYSDWV 384
+P+F GVYT V+ Y DW+
Sbjct: 534 KPEFPGVYTKVANYFDWI 551
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 67/141 (47%), Gaps = 23/141 (16%)
Query: 73 PICLP-NPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPK 131
P C+P +P L D ++SGWGR + V LQ EV L
Sbjct: 433 PACVPWSPYLFQPNDTCIVSGWGREKDNERV----------------FSLQWGEVKLIS- 475
Query: 132 EECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
C + Y Y + C GT G +D+C+GDSGGPL C + Y+ G+ SWG
Sbjct: 476 -NCSKFYGNRFYEKEME----CAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGE 530
Query: 192 GCARPDFYGVYTLVSCYSDWV 212
C +P+F GVYT V+ Y DW+
Sbjct: 531 NCGKPEFPGVYTKVANYFDWI 551
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTK 329
G ++GWG L E P +LQ +P+ + C+ S + N K
Sbjct: 131 QAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGK 190
Query: 330 QGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 191 RG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 248
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 16/194 (8%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 143
TA L +G+ G ++GWG L E P +LQ +P+ + C+ S +
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKDSTRIRIT 176
Query: 144 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 202
N K+G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 177 DNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 234
Query: 203 TLVSCYSDWVKSIL 216
T V W++ ++
Sbjct: 235 THVFRLKKWIQKVI 248
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P V+ + LP + LIS
Sbjct: 61 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTEC-LIS 119
Query: 279 GWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG S G S P +LQ + P+ C+ SY N +C G +GG DSCQ
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQ 174
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 175 GDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 65/117 (55%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +LQ + P+ C+ SY N +C G +GG D
Sbjct: 117 LISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 172 SCQGDSGGPVVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 223
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 215 ILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
+L + V+ I Y++ NDI L++L+ P N VS I LP +
Sbjct: 57 VLEGNEQFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTEC 116
Query: 275 GLISGWGR-LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
LISGWG LS G P L+ + P+ + EC+ A Y + C G +GG
Sbjct: 117 -LISGWGNTLSFGADYPDELKCLDAPVLTQAECK-----ASYPGKITNSMFCVGFLEGGK 170
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSCQ DSGGP+ C +G+ L G+ SWG GCA + GVYT V Y DW+K + A+
Sbjct: 171 DSCQRDSGGPVVC---NGQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN 223
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 74/160 (46%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N VS I LP + LISGWG LS G P
Sbjct: 89 KLSSPAVINARVSTISLPTAPPAAGTEC-LISGWGN--------------TLSFGADYPD 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ + P+ + EC+ A Y + C G +GG DSCQ DSGGP+ C +G
Sbjct: 134 ELKCLDAPVLTQAECK-----ASYPGKITNSMFCVGFLEGGKDSCQRDSGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L G+ SWG GCA + GVYT V Y DW+K + A
Sbjct: 186 Q--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN 223
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRL-SEGGSLPHI 292
YD+ NDI L++L+ N VS I LP T LISGWG S G P
Sbjct: 76 YDRKTLNNDIMLIKLSSRAVINAHVSTISLPT-APPATGTKCLISGWGNTASSGADYPDE 134
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ + P+ + +C SY SN C G +GG DSCQGD+GGP+ C +G+
Sbjct: 135 LQCLDAPVLSQAKCEASYPGKITSNMF-----CVGFLEGGKDSCQGDAGGPVVC---NGQ 186
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
L G+ SWG GCA+ + GVYT V Y W+K+ + A+
Sbjct: 187 --LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN 223
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G P LQ + P+ + +C SY SN C G +GG D
Sbjct: 117 LISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMF-----CVGFLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGD+GGP+ C +G+ L G+ SWG GCA+ + GVYT V Y W+K+ + A
Sbjct: 172 SCQGDAGGPVVC---NGQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN 223
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 31/211 (14%)
Query: 208 YSDWVKSILYARHEQR-------------RRVERIYTDFYDKSIY-----------KNDI 243
Y +WV + +A +EQ+ +R+ YT + ++++ NDI
Sbjct: 30 YDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDI 89
Query: 244 ALLELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
AL++L N ++PICLP T D+G SGWG L++ G L L ++P+
Sbjct: 90 ALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPI 148
Query: 301 TPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG-RYYLCGI 358
++C +Y Y + +C G + GG DSC+GD+GG L + R+++ GI
Sbjct: 149 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSETERWFVGGI 208
Query: 359 TSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
SWG + C YGVYT V Y W+++I+
Sbjct: 209 VSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
+A +L N ++PICLP T D+G SGWG L+
Sbjct: 89 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG----------------LT 132
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+ G L L ++P+ ++C +Y Y + +C G + GG DSC+GD+GG
Sbjct: 133 QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGA 192
Query: 172 LACPLPDG-RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L + R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 193 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
Y R+ E+ +E+IY + + DIALL+L +P F++++ P+CLP+ TVT+
Sbjct: 71 YERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ-TVTSL 129
Query: 274 V-----GLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC 322
+ G ++GWG L E + P +LQ +P+ + C+ S + N
Sbjct: 130 LRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAG 189
Query: 323 QVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYS 381
TK+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 190 FKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLK 247
Query: 382 DWVKSIL 388
W++ ++
Sbjct: 248 AWIQKVI 254
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+ TV
Sbjct: 68 RTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ-TV 126
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRS 137
T+ L G ++GWG L E + P +LQ +P+ + C+ S
Sbjct: 127 TS----------LLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N TK+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGFKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRK 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKAWIQKVI 254
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTK 329
G ++GWG L E G P +LQ +P+ + C+ S + N K
Sbjct: 131 QAGYKGRVTGWGNLKEKGQ-PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGK 189
Query: 330 QGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 190 RG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 247
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 143
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S +
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKEKGQ-PSVLQVVNLPIVERPVCKDSTRIRIT 175
Query: 144 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 202
N K+G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 176 DNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 233
Query: 203 TLVSCYSDWVKSIL 216
T V W++ ++
Sbjct: 234 THVFRLKKWIQKVI 247
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL 283
+ I Y+ + NDI L++L N V+ I LP T A G LISGWG
Sbjct: 69 KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNT 124
Query: 284 -SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 342
S G S P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGG
Sbjct: 125 KSSGTSXPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGXLEGGKDSCQGDSGG 179
Query: 343 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
P+ C G+ L GI SWG GCA+ + GVYT V Y W+K + ++
Sbjct: 180 PVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGXLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 31/211 (14%)
Query: 208 YSDWVKSILYARHEQR-------------RRVERIYTDFYDKSIY-----------KNDI 243
Y +WV + +A +EQ+ +R+ YT + ++++ NDI
Sbjct: 191 YDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDI 250
Query: 244 ALLELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
AL++L N ++PICLP T D+G SGWG L++ G L L ++P+
Sbjct: 251 ALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPI 309
Query: 301 TPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG-RYYLCGI 358
++C +Y Y + +C G + GG DSC+GDSGG L + R+++ GI
Sbjct: 310 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGI 369
Query: 359 TSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
SWG + C YGVYT V Y W+++I+
Sbjct: 370 VSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNP---GLTVTADVGLISGWGRLSEGADVGLISGWGRLS 112
+A +L N ++PICLP T D+G SGWG L+
Sbjct: 250 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG----------------LT 293
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGY-SNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+ G L L ++P+ ++C +Y Y + +C G + GG DSC+GDSGG
Sbjct: 294 QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGA 353
Query: 172 LACPLPDG-RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L + R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 354 LVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTK 329
G ++GWG L E G P +LQ +P+ + C+ S + N K
Sbjct: 131 QAGYKGRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGK 189
Query: 330 QGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 190 RG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 247
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 17/194 (8%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT+ ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 143
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S +
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKDSTRIRIT 175
Query: 144 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 202
N K+G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 176 DNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 233
Query: 203 TLVSCYSDWVKSIL 216
T V W++ ++
Sbjct: 234 THVFRLKKWIQKVI 247
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTK 329
G ++GWG L E G P +LQ +P+ + C+ S + N C G K
Sbjct: 131 QAGYKGRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKDSTRIRITDNMF-----CAGYK 184
Query: 330 --QGGL-DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W++
Sbjct: 185 PDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQ 244
Query: 386 SIL 388
++
Sbjct: 245 KVI 247
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 143
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S +
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKDSTRIRIT 175
Query: 144 SNYLNQCQVCTGTK--QGGL-DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFY 199
N C G K +G D+C+GDSGGP P + R+Y GI SWG GC R Y
Sbjct: 176 DNMF-----CAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY 230
Query: 200 GVYTLVSCYSDWVKSIL 216
G YT V W++ ++
Sbjct: 231 GFYTHVFRLKKWIQKVI 247
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GCAR YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GCAR
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARK 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 88/180 (48%), Gaps = 32/180 (17%)
Query: 213 KSILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA 272
KSI++ + +RR+ NDI L++L N V+ I LP T A
Sbjct: 69 KSIVHPSYNKRRK--------------NNDIMLIKLKSAASLNSRVASISLP----TSCA 110
Query: 273 DVG---LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
G LISGWG S G S P +L+ + P+ C+ +Y SN C G
Sbjct: 111 SAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGY 165
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+GG DSCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 166 LEGGKDSCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
Y R+ E+ +E+IY + + DIALL+L +P F++++ P+CLP+ TVT+
Sbjct: 71 YERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ-TVTSL 129
Query: 274 V-----GLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC 322
+ G ++GWG L E + P +LQ +P+ + C+ S + N
Sbjct: 130 LRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAG 189
Query: 323 QVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYS 381
TK+G D+C+GD+GGP P + R+Y GI SWG GC R YG YT V
Sbjct: 190 FKVNDTKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLK 247
Query: 382 DWVKSIL 388
W++ ++
Sbjct: 248 RWIQKVI 254
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+ TV
Sbjct: 68 RTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ-TV 126
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRS 137
T+ L G ++GWG L E + P +LQ +P+ + C+ S
Sbjct: 127 TS----------LLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N TK+G D+C+GD+GGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGFKVNDTKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRK 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKRWIQKVI 254
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 221 EQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGW 280
EQ V + YD + + DI LL L RP K +E + P+ L T ++ GW
Sbjct: 64 EQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHIL-GW 122
Query: 281 GRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDS 340
G+ ++G P +Q A + L +EEC +Y + Q +C G ++ G DSCQGDS
Sbjct: 123 GKTADG-DFPDTIQCAYIHLVSREECEHAYP-----GQITQNMLCAGDEKYGKDSCQGDS 176
Query: 341 GGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GGPL C +L G+ SWG + C + GVYT V Y++W++ + A
Sbjct: 177 GGPLVC-----GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 223
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L RP K +E + P+ L T ++ GWG+ ++G P
Sbjct: 91 LARPAKLSELIQPLPLERDCSANTTSCHIL----------------GWGKTADG-DFPDT 133
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
+Q A + L +EEC +Y + Q +C G ++ G DSCQGDSGGPL C
Sbjct: 134 IQCAYIHLVSREECEHAYP-----GQITQNMLCAGDEKYGKDSCQGDSGGPLVC-----G 183
Query: 181 YYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+L G+ SWG + C + GVYT V Y++W++ + A+
Sbjct: 184 DHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 223
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSTSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGR-LSEGGSLPHI 292
Y++ NDI L++L+ P N VS I LP + LISGWG LS G P
Sbjct: 76 YNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTEC-LISGWGNTLSFGADYPDE 134
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
L+ + P+ + EC+ A Y + C G +GG DSCQ D+GGP+ C +G+
Sbjct: 135 LKCLDAPVLTQAECK-----ASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVC---NGQ 186
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
L G+ SWG GCA + GVYT V Y DW+K + A+
Sbjct: 187 --LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN 223
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 74/160 (46%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N VS I LP + LISGWG LS G P
Sbjct: 89 KLSSPAVINARVSTISLPTAPPAAGTEC-LISGWGN--------------TLSFGADYPD 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ + P+ + EC+ A Y + C G +GG DSCQ D+GGP+ C +G
Sbjct: 134 ELKCLDAPVLTQAECK-----ASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L G+ SWG GCA + GVYT V Y DW+K + A
Sbjct: 186 Q--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN 223
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGR-LSEGGSLPHI 292
Y++ NDI L++L+ P N VS I LP + LISGWG LS G P
Sbjct: 76 YNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTEC-LISGWGNTLSFGADYPDE 134
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
L+ + P+ + EC+ A Y + C G +GG DSCQ D+GGP+ C +G+
Sbjct: 135 LKCLDAPVLTQAECK-----ASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVC---NGQ 186
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
L G+ SWG GCA + GVYT V Y DW+K + A+
Sbjct: 187 --LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN 223
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 74/160 (46%), Gaps = 25/160 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N VS I LP + LISGWG LS G P
Sbjct: 89 KLSSPAVINARVSTISLPTAPPAAGTEC-LISGWGN--------------TLSFGADYPD 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ + P+ + EC+ A Y + C G +GG DSCQ D+GGP+ C +G
Sbjct: 134 ELKCLDAPVLTQAECK-----ASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVC---NG 185
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ L G+ SWG GCA + GVYT V Y DW+K + A
Sbjct: 186 Q--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN 223
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 82 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 137
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 138 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 189
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 190 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 226
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 123 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 177
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 178 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 229
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 90 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 145
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 146 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 197
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 198 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 234
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 131 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 185
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 186 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 237
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+CQGDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPN----P 79
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA 127
Query: 80 GLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYA 139
L G ++GWG L E + G P +LQ +P+ + C+ S
Sbjct: 128 SLLQAGYKGRVTGWGNLKETWTTNV---------GKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 140 VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDF 198
+ N K+G D+CQGDSGGP P + R+Y GI SWG GC R
Sbjct: 179 IRITDNMFCAGYKPDEGKRG--DACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGK 236
Query: 199 YGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 237 YGFYTHVFRLKKWIQKVI 254
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 96 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 151
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 152 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 203
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 204 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 137 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 191
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 192 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 243
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
YD + NDI L++L + V+ I LP T A G LISGWG S G S
Sbjct: 76 YDSNTLNNDIMLIKLKSAASLDSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 81 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 136
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 137 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 188
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 189 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 225
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 122 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 176
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 177 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 228
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ + LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASVSLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVCA-- 184
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 185 -GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVCA---GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL---ISGWGRLSEGGSLPHILQAAE 297
NDI L++L++P N +V P+ LP T A G +SGWG + + LQ
Sbjct: 103 NDIMLIKLSKPATLNTYVQPVALP----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLN 158
Query: 298 VPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
+P+ +C SY + C G +GG DSCQGDSGGP+ C +G L G
Sbjct: 159 IPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQG 208
Query: 358 ITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ SWG GCA P GVY V ++DW+ S +
Sbjct: 209 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 239
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP T A G + +SGWG + +
Sbjct: 109 KLSKPATLNTYVQPVALP----TSCAPAGTMC------------TVSGWGNTMSSTADSN 152
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 153 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 204
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 205 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 239
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
NDI L++L++P N +V P+ LP+ + +SGWG + + LQ +P+
Sbjct: 83 NDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 141
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
+C SY + C G +GG DSCQGDSGGP+ C +G L G+ S
Sbjct: 142 LSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQGVVS 191
Query: 361 WGVGCARPDFYGVYTLVSCYSDWVKSIL 388
WG GCA P GVY V ++DW+ S +
Sbjct: 192 WGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP+ + + +SGWG + +
Sbjct: 89 KLSKPATLNTYVQPVALPS----------------SCAPAGTMCTVSGWGNTMSSTADKN 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL---ISGWGRLSEGGSLPHILQAAE 297
NDI L++L++P N +V P+ LP T A G +SGWG + + LQ
Sbjct: 98 NDIMLIKLSKPATLNTYVQPVALP----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLN 153
Query: 298 VPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
+P+ +C SY + C G +GG DSCQGDSGGP+ C +G L G
Sbjct: 154 IPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQG 203
Query: 358 ITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ SWG GCA P GVY V ++DW+ S +
Sbjct: 204 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 234
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP T A G + +SGWG + +
Sbjct: 104 KLSKPATLNTYVQPVALP----TSCAPAGTMC------------TVSGWGNTMSSTADSN 147
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 148 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 199
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 200 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 234
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 279
E++ R I+++F K++ ND+ALL L RP + + ICLP + SG
Sbjct: 210 QERKIRQVIIHSNFNPKTVV-NDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASG 268
Query: 280 WGRLSEGGS--LPHILQAAEVPLTPKEECRRSY--AVAGYSNYLNQCQVCTGTKQGGLDS 335
WG+ G +IL+ ++P +++C+ G L+Q VC G +QG D+
Sbjct: 269 WGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGK-DT 327
Query: 336 CQGDSGGPLACPLPDG--RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
C GD G PL CP P RY GI +WG+GC + GVY V+ + +W+ + A
Sbjct: 328 CTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAK 385
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
VA L RP + + ICLP + SGWG+ G+ R S
Sbjct: 232 VALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSR-------HRYS--- 281
Query: 116 SLPHILQAAEVPLTPKEECRRSY--AVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 173
+IL+ ++P +++C+ G L+Q VC G +QG D+C GD G PL
Sbjct: 282 ---NILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGK-DTCTGDGGSPLF 337
Query: 174 CPLPDG--RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
CP P RY GI +WG+GC + GVY V+ + +W+ + A+
Sbjct: 338 CPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAK 385
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL---ISGWGRLSEGGSLPHILQAAE 297
NDI L++L++P N +V P+ LP T A G +SGWG + + LQ
Sbjct: 83 NDIMLIKLSKPATLNTYVQPVALP----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLN 138
Query: 298 VPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
+P+ +C SY + C G +GG DSCQGDSGGP+ C +G L G
Sbjct: 139 IPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQG 188
Query: 358 ITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ SWG GCA P GVY V ++DW+ S +
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP T A G + +SGWG + +
Sbjct: 89 KLSKPATLNTYVQPVALP----TSCAPAGTMC------------TVSGWGNTMSSTADSN 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL---ISGWGRLSEGGSLPHILQAAE 297
NDI L++L++P N +V P+ LP T A G +SGWG + + LQ
Sbjct: 83 NDIMLIKLSKPATLNTYVQPVALP----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLN 138
Query: 298 VPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
+P+ +C SY + C G +GG DSCQGDSGGP+ C +G L G
Sbjct: 139 IPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQG 188
Query: 358 ITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ SWG GCA P GVY V ++DW+ S +
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP T A G + +SGWG + +
Sbjct: 89 KLSKPATLNTYVQPVALP----TSCAPAGTMC------------TVSGWGNTMSSTADSN 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
NDI L++L++P N +V P+ LP + +SGWG + LQ +P+
Sbjct: 83 NDIMLIKLSKPATLNTYVQPVALPTS-CAPAGTMCTVSGWGNTMSSTADSDKLQCLNIPI 141
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
+C SY + C G +GG DSCQGDSGGP+ C +G L G+ S
Sbjct: 142 LSYSDCNDSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQGVVS 191
Query: 361 WGVGCARPDFYGVYTLVSCYSDWVKSIL 388
WG GCA P GVY V +SDW+ S +
Sbjct: 192 WGYGCAEPGNPGVYAKVCIFSDWLTSTM 219
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP T A G + +SGWG +
Sbjct: 89 KLSKPATLNTYVQPVALP----TSCAPAGTMC------------TVSGWGNTMSSTADSD 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNDSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V +SDW+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTM 219
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 236 KSIYKNDIALLELTRPFKFNEFVSPICLPNPGLT---VTADVGLISGWGRLSEGGSLPHI 292
++ + NDIAL+ L P K VSPICLP + D+GLISGWGR +E
Sbjct: 168 RTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGR-TEKRDRAVR 226
Query: 293 LQAAEVPLTPKEECRR---SYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
L+AA +P+ P +C+ A Y+ + + G+DSC+GDSGG A P
Sbjct: 227 LKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDP 286
Query: 350 DG--RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYASVSAKR 396
+ ++Y G+ SWG C YG+YT V Y DW+ + + + +
Sbjct: 287 NDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQENSTPRE 332
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A L P K VSPICLP ++D L+ G D+GLISGWGR +E
Sbjct: 175 IALVRLKDPVKMGPTVSPICLPG----TSSDYNLMDG--------DLGLISGWGR-TEKR 221
Query: 116 SLPHILQAAEVPLTPKEECRR---SYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
L+AA +P+ P +C+ A Y+ + + G+DSC+GDSGG
Sbjct: 222 DRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAF 281
Query: 173 ACPLPDG--RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRR 224
A P+ ++Y G+ SWG C YG+YT V Y DW+ + R
Sbjct: 282 AVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQENSTPRE 332
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 218 ARHEQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVT 271
A E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 73 ANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
Query: 272 ADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVC 325
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 133 GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKP 192
Query: 326 TGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W+
Sbjct: 193 DEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Query: 385 KSIL 388
+ ++
Sbjct: 251 QKVI 254
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 218 ARHEQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVT 271
A E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 103 ANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 162
Query: 272 ADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVC 325
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 163 GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKP 222
Query: 326 TGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W+
Sbjct: 223 DEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280
Query: 385 KSIL 388
+ ++
Sbjct: 281 QKVI 284
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 98 RTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 154
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 155 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 206
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 207 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 264
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 265 GKYGFYTHVFRLKKWIQKVI 284
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 218 ARHEQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVT 271
A E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 73 ANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
Query: 272 ADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVC 325
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 133 GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKP 192
Query: 326 TGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W+
Sbjct: 193 DEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250
Query: 385 KSIL 388
+ ++
Sbjct: 251 QKVI 254
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 96 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 151
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGD+GGP+ C
Sbjct: 152 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDAGGPVVC--- 203
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 204 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 137 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 191
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGD+GGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 192 SCQGDAGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 243
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 75 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 134
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 135 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAYY 194
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 195 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 252
Query: 383 WVKSIL 388
W++ ++
Sbjct: 253 WIQKVI 258
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 72 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 128
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 129 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 180
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 181 TRIRITDNMFCAYYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 238
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 239 GKYGFYTHVFRLKKWIQKVI 258
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 103 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 162
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 163 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 222
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 223 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 280
Query: 383 WVKSIL 388
W++ ++
Sbjct: 281 WIQKVI 286
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 100 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 156
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 157 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 208
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 209 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 266
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 267 GKYGFYTHVFRLKKWIQKVI 286
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 107 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 166
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 167 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 226
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 227 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 284
Query: 383 WVKSIL 388
W++ ++
Sbjct: 285 WIQKVI 290
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 104 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 160
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 161 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 212
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 213 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 270
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 271 GKYGFYTHVFRLKKWIQKVI 290
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGD GGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDXGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGD GGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDXGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 107 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 166
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 167 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 226
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 227 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 284
Query: 383 WVKSIL 388
W++ ++
Sbjct: 285 WIQKVI 290
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 104 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 160
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 161 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 212
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 213 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 270
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 271 GKYGFYTHVFRLKKWIQKVI 290
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 103 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 162
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 163 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 222
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 223 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 280
Query: 383 WVKSIL 388
W++ ++
Sbjct: 281 WIQKVI 286
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 100 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 156
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 157 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 208
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 209 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 266
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 267 GKYGFYTHVFRLKKWIQKVI 286
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 101 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 160
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 161 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 220
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 221 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 278
Query: 383 WVKSIL 388
W++ ++
Sbjct: 279 WIQKVI 284
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 98 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 154
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 155 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 206
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 207 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 264
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 265 GKYGFYTHVFRLKKWIQKVI 284
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 101 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 160
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 161 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 220
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 221 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 278
Query: 383 WVKSIL 388
W++ ++
Sbjct: 279 WIQKVI 284
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 98 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 154
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 155 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 206
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 207 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 264
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 265 GKYGFYTHVFRLKKWIQKVI 284
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 101 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 160
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 161 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 220
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 221 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 278
Query: 383 WVKSIL 388
W++ ++
Sbjct: 279 WIQKVI 284
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 98 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 154
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 155 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 206
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 207 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 264
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 265 GKYGFYTHVFRLKKWIQKVI 284
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 217 YARHEQRRRVERI--------YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-- 266
++R R+VE+I + + K DIALL+L RP + ++++ P+CLP+
Sbjct: 115 HSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQT 174
Query: 267 --GLTVTADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNY 318
L G ++GWG E + P +LQ +PL + C+ S + N
Sbjct: 175 AAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNM 234
Query: 319 LNQCQVCTGTKQGGL---DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 374
C G K G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 235 F-----CAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY 289
Query: 375 TLVSCYSDWVKSIL 388
T V W++ ++
Sbjct: 290 THVFRLKKWIQKVI 303
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L RP + ++++ P+CLP+ +L G ++GWG E
Sbjct: 149 IALLKLKRPIELSDYIHPVCLPDKQTA-----------AKLLHAGFKGRVTGWGNRRETW 197
Query: 116 SL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL---DSCQG 166
+ P +LQ +PL + C+ S + N C G K G D+C+G
Sbjct: 198 TTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMF-----CAGYKPGEGKRGDACEG 252
Query: 167 DSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
DSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 253 DSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 303
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 100 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 159
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 160 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 219
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 220 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 277
Query: 383 WVKSIL 388
W++ ++
Sbjct: 278 WIQKVI 283
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 97 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 153
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 154 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 205
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 206 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 263
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 264 GKYGFYTHVFRLKKWIQKVI 283
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 217 YARHEQRRRVERI--------YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-- 266
++R R+VE+I + + K DIALL+L RP + ++++ P+CLP+
Sbjct: 66 HSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQT 125
Query: 267 --GLTVTADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNY 318
L G ++GWG E + P +LQ +PL + C+ S + N
Sbjct: 126 AAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNM 185
Query: 319 LNQCQVCTGTKQGGL---DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 374
C G K G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 186 F-----CAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY 240
Query: 375 TLVSCYSDWVKSIL 388
T V W++ ++
Sbjct: 241 THVFRLKKWIQKVI 254
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L RP + ++++ P+CLP+ +L G ++GWG E
Sbjct: 100 IALLKLKRPIELSDYIHPVCLPDKQTA-----------AKLLHAGFKGRVTGWGNRRETW 148
Query: 116 SL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL---DSCQG 166
+ P +LQ +PL + C+ S + N C G K G D+C+G
Sbjct: 149 TTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMF-----CAGYKPGEGKRGDACEG 203
Query: 167 DSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
DSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 204 DSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 217 YARHEQRRRVERI--------YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-- 266
++R R+VE+I + + K DIALL+L RP + ++++ P+CLP+
Sbjct: 66 HSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQT 125
Query: 267 --GLTVTADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNY 318
L G ++GWG E + P +LQ +PL + C+ S + N
Sbjct: 126 AAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNM 185
Query: 319 LNQCQVCTGTKQGGL---DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 374
C G K G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 186 F-----CAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY 240
Query: 375 TLVSCYSDWVKSIL 388
T V W++ ++
Sbjct: 241 THVFRLKKWIQKVI 254
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 28/180 (15%)
Query: 47 KEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLIS 106
KE R A+ +L RP + ++++ P+CLP+ +L G ++
Sbjct: 93 KENLDRDIAL--LKLKRPIELSDYIHPVCLPDKQTA-----------AKLLHAGFKGRVT 139
Query: 107 GWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 160
GWG E + P +LQ +PL + C+ S + N C G K G
Sbjct: 140 GWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMF-----CAGYKPGE 194
Query: 161 L---DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 236 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 295
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 296 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 355
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 356 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 413
Query: 383 WVKSIL 388
W++ ++
Sbjct: 414 WIQKVI 419
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 233 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 289
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 290 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 341
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 342 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 399
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 400 GKYGFYTHVFRLKKWIQKVI 419
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
NDI L++L++P N +V P+ LP+ + +SGWG + LQ +P+
Sbjct: 83 NDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTADGDKLQCLNIPI 141
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
+C SY + C G +GG DSCQGDSGGP+ C +G L G+ S
Sbjct: 142 LSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQGVVS 191
Query: 361 WGVGCARPDFYGVYTLVSCYSDWVKSIL 388
WG GCA P GVY V ++DW+ S +
Sbjct: 192 WGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP+ + + +SGWG +
Sbjct: 89 KLSKPATLNTYVQPVALPS----------------SCAPAGTMCTVSGWGNTMSSTADGD 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVP 299
NDI L++LT+P N++V + LP A + +SGWG + LQ +P
Sbjct: 82 NNDIMLIKLTKPATLNQYVHAVALPTE-CAADATMCTVSGWGNTMSSVADGDKLQCLSLP 140
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
+ +C SY + Q C G +GG DSCQGDSGGP+ C L G+
Sbjct: 141 ILSHADCANSYP-----GMITQSMFCAGYLEGGKDSCQGDSGGPVVC-----NGVLQGVV 190
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
SWG GCA D GVY V S WV+ +
Sbjct: 191 SWGYGCAERDHPGVYAKVCVLSGWVRDTM 219
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+LT+P N++V + LP + A + +SGWG +
Sbjct: 89 KLTKPATLNQYVHAVALPT----------------ECAADATMCTVSGWGNTMSSVADGD 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + Q C G +GG DSCQGDSGGP+ C
Sbjct: 133 KLQCLSLPILSHADCANSYP-----GMITQSMFCAGYLEGGKDSCQGDSGGPVVC----- 182
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA D GVY V S WV+ +
Sbjct: 183 NGVLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTM 219
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 226 VERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSE 285
V + YD + + DI LL L RP K +E + P+ L T ++ GWG+ ++
Sbjct: 69 VRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHIL-GWGKTAD 127
Query: 286 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
G P +Q A + L +EEC +Y + Q +C G ++ G DSCQGDSGGPL
Sbjct: 128 G-DFPDTIQCAYIHLVSREECEHAY-----PGQITQNMLCAGDEKYGKDSCQGDSGGPLV 181
Query: 346 CPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAS 391
C +L G+ SWG + C + GVYT V Y++W++ + A
Sbjct: 182 C-----GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 223
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 28/161 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP K +E + P+ L T ++ GWG+ ++G P
Sbjct: 90 RLARPAKLSELIQPLPLERDCSAQTTSCHIL----------------GWGKTADG-DFPD 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+Q A + L +EEC +Y + Q +C G ++ G DSCQGDSGGPL C
Sbjct: 133 TIQCAYIHLVSREECEHAY-----PGQITQNMLCAGDEKYGKDSCQGDSGGPLVC----- 182
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+L G+ SWG + C + GVYT V Y++W++ + A+
Sbjct: 183 GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 223
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
NDI L++L++P N +V P+ LP+ + +SGWG + + LQ +P+
Sbjct: 83 NDIMLIKLSKPATLNTYVQPVALPS-SCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 141
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
+C SY + C G +GG DSCQGDSGGP+ C +G L G+ S
Sbjct: 142 LSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQGVVS 191
Query: 361 WGVGCARPDFYGVYTLVSCYSDWVKSIL 388
WG GCA P GVY V +++W+ S +
Sbjct: 192 WGYGCAEPGNPGVYAKVCIFNNWLTSTM 219
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP+ + + +SGWG + +
Sbjct: 89 KLSKPATLNTYVQPVALPS----------------SCAPAGTMCTVSGWGNTMSSTADKN 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V +++W+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTM 219
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHIL 293
YD + + DI LL L RP K +E + P+ L T ++ GWG+ ++G P +
Sbjct: 78 YDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHIL-GWGKTADG-DFPDTI 135
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
Q A + L +EEC +Y + Q +C G ++ G DSCQGDSGGPL C
Sbjct: 136 QCAYIHLVSREECEHAY-----PGQITQNMLCAGDEKYGKDSCQGDSGGPLVC-----GD 185
Query: 354 YLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYA 390
+L G+ SWG + C + GVYT V Y++W++ + A
Sbjct: 186 HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA 223
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP K +E + P+ L T ++ GWG+ ++G P
Sbjct: 91 RLARPAKLSELIQPLPLERDCSAQTTSCHIL----------------GWGKTADG-DFPD 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+Q A + L +EEC +Y + Q +C G ++ G DSCQGDSGGPL C
Sbjct: 134 TIQCAYIHLVSREECEHAY-----PGQITQNMLCAGDEKYGKDSCQGDSGGPLVC----- 183
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYA 218
+L G+ SWG + C + GVYT V Y++W++ + A
Sbjct: 184 GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA 223
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GD+GGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GD+GGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 120 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 179
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 180 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 239
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GD+GGP P + R+Y GI SWG GC R YG YT V
Sbjct: 240 KPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 297
Query: 383 WVKSIL 388
W++ ++
Sbjct: 298 WIQKVI 303
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 117 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 173
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 174 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 225
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GD+GGP P + R+Y GI SWG GC R
Sbjct: 226 TRIRITDNMFCAGYKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 283
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 284 GKYGFYTHVFRLKKWIQKVI 303
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 72 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 131
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 132 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 191
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GD+GGP P + R+Y GI SWG GC R YG YT V
Sbjct: 192 KPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 249
Query: 383 WVKSIL 388
W++ ++
Sbjct: 250 WIQKVI 255
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 69 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 125
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 126 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 177
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GD+GGP P + R+Y GI SWG GC R
Sbjct: 178 TRIRITDNMFCAGYKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 235
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 236 GKYGFYTHVFRLKKWIQKVI 255
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLXSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 102 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 161
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 162 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 221
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GD+GGP P + R+Y GI SWG GC R YG YT V
Sbjct: 222 KPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 279
Query: 383 WVKSIL 388
W++ ++
Sbjct: 280 WIQKVI 285
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 99 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 155
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 156 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 207
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GD+GGP P + R+Y GI SWG GC R
Sbjct: 208 TRIRITDNMFCAGYKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 265
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 266 GKYGFYTHVFRLKKWIQKVI 285
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R +G YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
+G YT V W++ ++
Sbjct: 235 GKFGFYTHVFRLKKWIQKVI 254
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD 273
Y R+ E+ +E+IY + + DIALL+L +P F++++ P+CLP+ TVT+
Sbjct: 71 YERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ-TVTSL 129
Query: 274 V-----GLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC 322
+ G ++GWG L E + P +LQ +P+ + C+ S + N
Sbjct: 130 LRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAG 189
Query: 323 QVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYS 381
TK+G D+C+GDSGGP P + R+Y GI S G GC R YG YT V
Sbjct: 190 FKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLK 247
Query: 382 DWVKSIL 388
W++ ++
Sbjct: 248 RWIQKVI 254
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+ TV
Sbjct: 68 RTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ-TV 126
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRS 137
T+ L G ++GWG L E + P +LQ +P+ + C+ S
Sbjct: 127 TS----------LLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N TK+G D+C+GDSGGP P + R+Y GI S G GC R
Sbjct: 177 TRIRITDNMFCAGFKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRK 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKRWIQKVI 254
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + +IAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY--AVAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 64 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLIS 123
Query: 279 GWGRL-SEGGSLPHILQAA-EVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
GWG S G S P +LQ + + P+ C+ SY N +C G +GG DSC
Sbjct: 124 GWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSC 178
Query: 337 -QGDSGGPLACPLPDGRYYLCGITSWGVGC-ARPDFYGVYTLVSCYSDWVKSILYAS 391
QGDSGGP+ C +G+ L GI SWG GC A+ + GVYT V Y +W++ + A+
Sbjct: 179 SQGDSGGPVVC--SNGQ--LQGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTIAAN 231
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 77/163 (47%), Gaps = 26/163 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P N V+ + LP + LISGWG S G S P
Sbjct: 92 KLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGNTK--------------SSGSSYPS 137
Query: 120 ILQAA-EVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC-QGDSGGPLACPLP 177
+LQ + + P+ C+ SY N +C G +GG DSC QGDSGGP+ C
Sbjct: 138 LLQCSLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCSQGDSGGPVVC--S 190
Query: 178 DGRYYLCGITSWGVGC-ARPDFYGVYTLVSCYSDWVKSILYAR 219
+G+ L GI SWG GC A+ + GVYT V Y +W++ + A
Sbjct: 191 NGQ--LQGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTIAAN 231
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 22/189 (11%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMF---- 186
Query: 324 VCTGTK--QGGL-DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSC 379
C G K +G D+C+ DSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 187 -CAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFR 245
Query: 380 YSDWVKSIL 388
W++ ++
Sbjct: 246 LKKWIQKVI 254
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTK--QGGL-DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGC 193
+ N C G K +G D+C+ DSGGP P + R+Y GI SWG GC
Sbjct: 177 TRIRITDNMF-----CAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGEGC 231
Query: 194 ARPDFYGVYTLVSCYSDWVKSIL 216
R YG YT V W++ ++
Sbjct: 232 DRDGKYGFYTHVFRLKKWIQKVI 254
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 22/189 (11%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E + P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKDSTRIRITDNMF---- 186
Query: 324 VCTGTK--QGGL-DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSC 379
C G K +G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 187 -CAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFR 245
Query: 380 YSDWVKSIL 388
W++ ++
Sbjct: 246 LKKWIQKVI 254
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSL------PHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E + P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTK--QGGL-DSCQGDSGGPLACPLP-DGRYYLCGITSWGVGC 193
+ N C G K +G D+C+GDSGGP P + R+Y GI SWG GC
Sbjct: 177 TRIRITDNMF-----CAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGC 231
Query: 194 ARPDFYGVYTLVSCYSDWVKSIL 216
R YG YT V W++ ++
Sbjct: 232 DRDGKYGFYTHVFRLKKWIQKVI 254
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
NDI L++L++ N +V P+ LP+ + +SGWG + + LQ +P+
Sbjct: 83 NDIMLIKLSKSATLNTYVQPVALPSS-CAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 141
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
+C SY + C G +GG DSCQGDSGGP+ C +G L G+ S
Sbjct: 142 LSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NGE--LQGVVS 191
Query: 361 WGVGCARPDFYGVYTLVSCYSDWVKSIL 388
WG GCA P GVY V ++DW+ S +
Sbjct: 192 WGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++ N +V P+ LP+ + + +SGWG + +
Sbjct: 89 KLSKSATLNTYVQPVALPS----------------SCAPAGTMCTVSGWGNTMSSTADKN 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C +G
Sbjct: 133 KLQCLNIPILSYSDCNNSYP-----GMITNAMFCAGYLEGGKDSCQGDSGGPVVC---NG 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 185 E--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 13/180 (7%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTK 329
G ++GWG L P +LQ +P+ + C+ S + N K
Sbjct: 131 QAGYKGRVTGWGNLK---GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGK 187
Query: 330 QGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+G D+C+GDSGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 188 RG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 245
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 143
TA L +G+ G ++GWG L P +LQ +P+ + C+ S +
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLK---GQPSVLQVVNLPIVERPVCKDSTRIRIT 173
Query: 144 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVY 202
N K+G D+C+GDSGGP P + R+Y GI SWG GC R YG Y
Sbjct: 174 DNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 231
Query: 203 TLVSCYSDWVKSIL 216
T V W++ ++
Sbjct: 232 THVFRLKKWIQKVI 245
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R G YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
G YT V W++ ++
Sbjct: 235 GKIGFYTHVFRLKKWIQKVI 254
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+ DSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEPDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+ DSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEPDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGG 287
++ FY I DIALLEL P K + V + LP T + ++GWG +
Sbjct: 79 VHPQFYTAQI-GADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDE 137
Query: 288 SLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSG 341
LP L+ +VP+ C Y + Y+ + +C G + DSCQGDSG
Sbjct: 138 RLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSG 195
Query: 342 GPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
GPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 196 GPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL P K + V + LP T + W ++GWG +
Sbjct: 92 IALLELEEPVKVSSHVHTVTLPPASETFPPG---MPCW-----------VTGWGDVDNDE 137
Query: 116 SLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSG 169
LP L+ +VP+ C Y + Y+ + +C G + DSCQGDSG
Sbjct: 138 RLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSG 195
Query: 170 GPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
GPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 196 GPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGG 287
++ FY I DIALLEL P K + V + LP T + ++GWG +
Sbjct: 79 VHPQFYTAQI-GADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDE 137
Query: 288 SLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSG 341
LP L+ +VP+ C Y + Y+ + +C G + DSCQGDSG
Sbjct: 138 RLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSG 195
Query: 342 GPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
GPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 196 GPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL P K + V + LP T + W ++GWG +
Sbjct: 92 IALLELEEPVKVSSHVHTVTLPPASETFPPG---MPCW-----------VTGWGDVDNDE 137
Query: 116 SLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSG 169
LP L+ +VP+ C Y + Y+ + +C G + DSCQGDSG
Sbjct: 138 RLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSG 195
Query: 170 GPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
GPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 196 GPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI SWG GC R G YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI SWG GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
G YT V W++ ++
Sbjct: 235 GKPGFYTHVFRLKKWIQKVI 254
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 229 IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGG 287
++ FY I DIALLEL P K + V + LP T + ++GWG +
Sbjct: 79 VHPQFYTAQI-GADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDE 137
Query: 288 SLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSG 341
LP L+ +VP+ C Y + Y+ + +C G + DSCQGDSG
Sbjct: 138 RLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSG 195
Query: 342 GPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
GPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 196 GPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIH 238
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL P K + V + LP T + W ++GWG +
Sbjct: 92 IALLELEEPVKVSSHVHTVTLPPASETFPPG---MPCW-----------VTGWGDVDNDE 137
Query: 116 SLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSG 169
LP L+ +VP+ C Y + Y+ + +C G + DSCQGDSG
Sbjct: 138 RLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSG 195
Query: 170 GPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 213
GPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 196 GPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIH 238
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 215 ILYARHEQRRRVER-IYTDFYDKSIYKNDIALLEL----TRPFKFNEFVSPICLPNPGLT 269
++ EQ+ VE+ I +D Y NDIALL+L +R + + V +CLP L
Sbjct: 68 VVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQ 127
Query: 270 VTADVGL-ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 327
+ +SG+G+ L+ A V L P C + + + + +C G
Sbjct: 128 LPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLL---NRTVTDNMLCAG 184
Query: 328 -TKQGG-----LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYS 381
T+ GG D+CQGDSGGPL C L DGR L GI SWG+GC + D GVYT V+ Y
Sbjct: 185 DTRSGGPQANLHDACQGDSGGPLVC-LNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYL 243
Query: 382 DWVKS 386
DW++
Sbjct: 244 DWIRD 248
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGG-----LDSCQGDSGGPLAC 174
L+ A V L P C + + + + +C G T+ GG D+CQGDSGGPL C
Sbjct: 153 LKEAHVRLYPSSRCTSQHLL---NRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC 209
Query: 175 PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
L DGR L GI SWG+GC + D GVYT V+ Y DW++
Sbjct: 210 -LNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRD 248
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 239 YKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQAAE 297
Y NDIA+L L + LP N +ISGWGR +LP ILQ +
Sbjct: 90 YSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSS 149
Query: 298 VPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
+P+ +C + G +N + +C G +C GDSGGPL C PDG + G
Sbjct: 150 IPVITTAQCTAAMVGVGGANIWDN-HICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVG 206
Query: 358 ITSW----GVGCARPDFYGVYTLVSCYSDWV 384
+TSW G+G PD+ VYT VS Y W+
Sbjct: 207 VTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 104 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
+ISGWGR +LP ILQ + +P+ +C + G +N + +C G +
Sbjct: 128 VISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDN-HICVQDPAGNTGA 186
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSW----GVGCARPDFYGVYTLVSCYSDWV 212
C GDSGGPL C PDG + G+TSW G+G PD+ VYT VS Y W+
Sbjct: 187 CNGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI S G GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI S G GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+C+GDSGGP P + R+Y GI S G GC R YG YT V
Sbjct: 191 KPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+C+GDSGGP P + R+Y GI S G GC R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 215 ILYARHEQRRRVER-IYTDFYDKSIYKNDIALLEL----TRPFKFNEFVSPICLPNPGLT 269
++ EQ+ VE+ I +D Y NDIALL+L +R + + V +CLP L
Sbjct: 81 VVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQ 140
Query: 270 VTADVGL-ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 327
+ +SG+G+ L+ A V L P C + + + + +C G
Sbjct: 141 LPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLL---NRTVTDNMLCAG 197
Query: 328 -TKQGG-----LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYS 381
T+ GG D+CQGDSGGPL C L DGR L GI SWG+GC + D GVYT V+ Y
Sbjct: 198 DTRSGGPQANLHDACQGDSGGPLVC-LNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYL 256
Query: 382 DWVKSIL 388
DW++ +
Sbjct: 257 DWIRDNM 263
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 10/102 (9%)
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGG-----LDSCQGDSGGPLAC 174
L+ A V L P C + + + + +C G T+ GG D+CQGDSGGPL C
Sbjct: 166 LKEAHVRLYPSSRCTSQHLL---NRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC 222
Query: 175 PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L DGR L GI SWG+GC + D GVYT V+ Y DW++ +
Sbjct: 223 -LNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 263
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 81/160 (50%), Gaps = 19/160 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEF-VSPICLPNPGLTVTADVG---LISGWGRL-SEGGS 288
Y+ + NDI L++L + V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLXDSRVASISLP----TSCASAGTQCLISGWGNTKSSGTS 131
Query: 289 LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPL 348
P +L+ + P+ C+ +Y SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 YPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKDSCQGDSGGPVVC-- 184
Query: 349 PDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 185 -SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 221
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G +GG D
Sbjct: 118 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGYLEGGKD 172
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 173 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 224
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
G ++GWG L E G P +LQ +P+ + C+ S + N
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
K+G D+ +GDSGGP P + R+Y GI SWG G R YG YT V
Sbjct: 191 KPDEGKRG--DAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKK 248
Query: 383 WVKSIL 388
W++ ++
Sbjct: 249 WIQKVI 254
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 22/200 (11%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPNPGLTV 83
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD---RE 124
Query: 84 TADVGLISGWGRLSEGADVGLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRS 137
TA L +G+ G ++GWG L E G P +LQ +P+ + C+ S
Sbjct: 125 TAASLLQAGYK--------GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 138 YAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARP 196
+ N K+G D+ +GDSGGP P + R+Y GI SWG G R
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRG--DAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGADRD 234
Query: 197 DFYGVYTLVSCYSDWVKSIL 216
YG YT V W++ ++
Sbjct: 235 GKYGFYTHVFRLKKWIQKVI 254
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 242 DIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLP--HILQAAEV 298
DIALLEL P + V + LP T + ++GWG + LP L+ +V
Sbjct: 91 DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKV 150
Query: 299 PLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
P+ C Y + Y+ + +C G Q DSCQGDSGGPL C + +G +
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQR--DSCQGDSGGPLVCKV-NGTWL 207
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 105 ISGWGRLSEGGSLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQ 158
++GWG + LP L+ +VP+ C Y + Y+ + +C G Q
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ 186
Query: 159 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
DSCQGDSGGPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 187 R--DSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 82/195 (42%), Gaps = 17/195 (8%)
Query: 201 VYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDK-------SIYKNDIALLELTRPFK 253
V T C S + +S R R T S ND+A+L+L+
Sbjct: 36 VLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIP 95
Query: 254 FNEFVSPICLPNPGLT-VTADVGLISGWGRLSEGGS-LPHILQAAEVPLTPKEECRRSYA 311
+ L G V ++GWG SEGGS P L VP+ + CR Y
Sbjct: 96 SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG 155
Query: 312 VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFY 371
+ +N + C G GG DSCQGDSGGP+ D L G SWG GCARP++
Sbjct: 156 TSAITNQM----FCAGVSSGGKDSCQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYS 207
Query: 372 GVYTLVSCYSDWVKS 386
GVY V ++ +
Sbjct: 208 GVYASVGALRSFIDT 222
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 105 ISGWGRLSEGGS-LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG SEGGS P L VP+ + CR Y + +N + C G GG DS
Sbjct: 120 VAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQM----FCAGVSSGGKDS 175
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGP+ D L G SWG GCARP++ GVY V ++ +
Sbjct: 176 CQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDT 222
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 82/195 (42%), Gaps = 17/195 (8%)
Query: 201 VYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDK-------SIYKNDIALLELTRPFK 253
V T C S + +S R R T S ND+A+L+L+
Sbjct: 36 VLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIP 95
Query: 254 FNEFVSPICLPNPGLT-VTADVGLISGWGRLSEGGS-LPHILQAAEVPLTPKEECRRSYA 311
+ L G V ++GWG SEGGS P L VP+ + CR Y
Sbjct: 96 SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG 155
Query: 312 VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFY 371
+ +N + C G GG DSCQGDSGGP+ D L G SWG GCARP++
Sbjct: 156 TSAITNQM----FCAGVSSGGKDSCQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYS 207
Query: 372 GVYTLVSCYSDWVKS 386
GVY V ++ +
Sbjct: 208 GVYASVGALRSFIDT 222
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 105 ISGWGRLSEGGS-LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG SEGGS P L VP+ + CR Y + +N + C G GG DS
Sbjct: 120 VAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQM----FCAGVSSGGKDS 175
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGP+ D L G SWG GCARP++ GVY V ++ +
Sbjct: 176 CQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDT 222
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 77/151 (50%), Gaps = 10/151 (6%)
Query: 241 NDIALLELT----RPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGS-LPHILQ 294
+D+ L+ L R ++FV PICLP PG T A I+GWG L E S L+
Sbjct: 89 HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLR 148
Query: 295 AAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
A VPL +C Y ++ +C G D+CQGDSGGPLAC +G Y
Sbjct: 149 EALVPLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAY 204
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
L GI SWG GC R GVYT V+ Y DW+
Sbjct: 205 LYGIISWGDGCGRLHKPGVYTRVANYVDWIN 235
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 68 NEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEV 126
++FV PICLP PG T A I+GWG L E +SG+ L+ A V
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGHLDEN-----VSGYSSS---------LREALV 152
Query: 127 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGI 186
PL +C Y ++ +C G D+CQGDSGGPLAC +G YL GI
Sbjct: 153 PLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGI 208
Query: 187 TSWGVGCARPDFYGVYTLVSCYSDWVK 213
SWG GC R GVYT V+ Y DW+
Sbjct: 209 ISWGDGCGRLHKPGVYTRVANYVDWIN 235
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 77/151 (50%), Gaps = 10/151 (6%)
Query: 241 NDIALLELT----RPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGS-LPHILQ 294
+D+ L+ L R ++FV PICLP PG T A I+GWG L E S L+
Sbjct: 89 HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLR 148
Query: 295 AAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
A VPL +C Y ++ +C G D+CQGDSGGPLAC +G Y
Sbjct: 149 EALVPLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAY 204
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
L GI SWG GC R GVYT V+ Y DW+
Sbjct: 205 LYGIISWGDGCGRLHKPGVYTRVANYVDWIN 235
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 68 NEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEV 126
++FV PICLP PG T A I+GWG L E +SG+ L+ A V
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGHLDEN-----VSGYSSS---------LREALV 152
Query: 127 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGI 186
PL +C Y ++ +C G D+CQGDSGGPLAC +G YL GI
Sbjct: 153 PLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGI 208
Query: 187 TSWGVGCARPDFYGVYTLVSCYSDWVK 213
SWG GC R GVYT V+ Y DW+
Sbjct: 209 ISWGDGCGRLHKPGVYTRVANYVDWIN 235
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G+YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+CQGDSGGP+ C G+ L GI SWG GCA+ + G+YT V Y W+K + +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIASN 223
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 77/151 (50%), Gaps = 10/151 (6%)
Query: 241 NDIALLELT----RPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGS-LPHILQ 294
+D+ L+ L R ++FV PICLP PG T A I+GWG L E S L+
Sbjct: 124 HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLR 183
Query: 295 AAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
A VPL +C Y ++ +C G D+CQGDSGGPLAC +G Y
Sbjct: 184 EALVPLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAY 239
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
L GI SWG GC R GVYT V+ Y DW+
Sbjct: 240 LYGIISWGDGCGRLHKPGVYTRVANYVDWIN 270
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 68 NEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAAEV 126
++FV PICLP PG T A I+GWG L E +SG+ L+ A V
Sbjct: 142 SQFVQPICLPEPGSTFPAGHKCQIAGWGHLDEN-----VSGYSS---------SLREALV 187
Query: 127 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGI 186
PL +C Y ++ +C G D+CQGDSGGPLAC +G YL GI
Sbjct: 188 PLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGI 243
Query: 187 TSWGVGCARPDFYGVYTLVSCYSDWVK 213
SWG GC R GVYT V+ Y DW+
Sbjct: 244 ISWGDGCGRLHKPGVYTRVANYVDWIN 270
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G+YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+CQGDSGGP+ C G+ L GI SWG GCA+ + G+YT V Y W+K + +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIASN 223
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 11/173 (6%)
Query: 222 QRRRVERIYTDF-YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS-G 279
Q+ ++ +++ + Y+ NDI LL+L+ F++ VS +CLP+ A ++ G
Sbjct: 66 QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTG 125
Query: 280 WGRLS-EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
WG + P LQ A +PL C++ + + +C G G+ SC G
Sbjct: 126 WGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMG 178
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSGGPL C +G + L GI SWG GVY V+ +WV+ L A+
Sbjct: 179 DSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 230
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS-EGGSLP 118
+L+ F++ VS +CLP+ A ++ +GWG + P
Sbjct: 92 KLSTAASFSQTVSAVCLPSASDDFAAGTTCVT--------------TGWGLTRYTNANTP 137
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
LQ A +PL C++ + + +C G G+ SC GDSGGPL C +
Sbjct: 138 DRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMGDSGGPLVCK-KN 189
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G + L GI SWG GVY V+ +WV+ L A
Sbjct: 190 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 230
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 239 YKNDIALLELTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGG-SLPHILQA 295
Y ND+ LL L++P + V PI LP P L T L SGWG ++ L
Sbjct: 93 YSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTC---LASGWGSITPTKFQFTDDLYC 149
Query: 296 AEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYL 355
+ L P E+C +++ + +C G GG D+C+GDSGGPL C DG L
Sbjct: 150 VNLKLLPNEDCAKAHI-----EKVTDAMLCAGEMDGGKDTCKGDSGGPLIC---DG--VL 199
Query: 356 CGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
GITSWG C PD GVYT ++ ++ W+K +
Sbjct: 200 QGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 61 LTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLP 118
L++P + V PI LP P L T L SGWG ++
Sbjct: 102 LSKPADITDTVKPITLPTEEPKLGSTC---LASGWGSIT--------------PTKFQFT 144
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
L + L P E+C +++ + +C G GG D+C+GDSGGPL C D
Sbjct: 145 DDLYCVNLKLLPNEDCAKAHI-----EKVTDAMLCAGEMDGGKDTCKGDSGGPLIC---D 196
Query: 179 GRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
G L GITSWG C PD GVYT ++ ++ W+K +
Sbjct: 197 G--VLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 17/164 (10%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEG 286
+ + YD + +ND+AL+ LT P KFN+ V PI L + ++ ++GWG G
Sbjct: 72 DAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLG 131
Query: 287 GSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLAC 346
G+ P+ LQ E+ + P+++C R + +CT TK+G +C GDSGGPL
Sbjct: 132 GNTPNALQEIELIVHPQKQCERDQW------RVIDSHICTLTKRGE-GACHGDSGGPLV- 183
Query: 347 PLPDGRYYLCGITSWGVGCA--RPDFYGVYTLVSCYSDWVKSIL 388
GI S+G CA PD VYT VS + W+ + L
Sbjct: 184 ----ANGAQIGIVSFGSPCALGEPD---VYTRVSSFVSWINANL 220
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 74/163 (45%), Gaps = 32/163 (19%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
VA LT P KFN+ V PI L T D L S L+ GWG GG
Sbjct: 88 VALVHLTNPIKFNDLVQPIKLS------TNDEDLESNPCTLT---------GWGSTRLGG 132
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ P+ LQ E+ + P+++C R + +CT TK+G +C GDSGGPL
Sbjct: 133 NTPNALQEIELIVHPQKQCERDQW------RVIDSHICTLTKRGE-GACHGDSGGPLV-- 183
Query: 176 LPDGRYYLCGITSWGVGCA--RPDFYGVYTLVSCYSDWVKSIL 216
GI S+G CA PD VYT VS + W+ + L
Sbjct: 184 ---ANGAQIGIVSFGSPCALGEPD---VYTRVSSFVSWINANL 220
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 11/173 (6%)
Query: 222 QRRRVERIYTDF-YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS-G 279
Q+ ++ +++ + Y+ NDI LL+L+ F++ VS +CLP+ A ++ G
Sbjct: 81 QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTG 140
Query: 280 WGRLS-EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
WG + P LQ A +PL C++ + + +C G G+ SC G
Sbjct: 141 WGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMG 193
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSGGPL C +G + L GI SWG GVY V+ +WV+ L A+
Sbjct: 194 DSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 245
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS-EGGSLP 118
+L+ F++ VS +CLP+ A ++ +GWG + P
Sbjct: 107 KLSTAASFSQTVSAVCLPSASDDFAAGTTCVT--------------TGWGLTRYTNANTP 152
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
LQ A +PL C++ + + +C G G+ SC GDSGGPL C +
Sbjct: 153 DRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMGDSGGPLVCK-KN 204
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
G + L GI SWG GVY V+ +WV+ L A
Sbjct: 205 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 245
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G+YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + G+YT V Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTI 220
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SCQGDSGGP+ C G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSAIITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSAIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGD+GGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDAGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGD+GGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 ACQGDAGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGD+GGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDAGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGD+GGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 172 ACQGDAGGPVVC---SGK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query: 221 EQRRRVERIY-TDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 279
Q V+ I+ + YD + +ND+++++ F+ V PIC P+P SG
Sbjct: 69 RQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSG 128
Query: 280 WGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG--GLDSC 336
WG ++ GG P +L+ + +T C Y S+ + +C G DSC
Sbjct: 129 WGTINSGGVCCPAVLRYVTLNITTNAFCDAVYT----SDTIYDDMICATDNTGMTDRDSC 184
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
QGDSGGPL+ G + L GI SWG+GCA + GVY+ V ++ W+ +
Sbjct: 185 QGDSGGPLSVKDGSGIFSLVGIVSWGIGCASG-YPGVYSRVGFHAGWITDTI 235
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 65 FKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHILQAA 124
F+ V PIC P+P SGWG ++ G G P +L+
Sbjct: 101 ITFDINVGPICAPDPANDYVYRKSQCSGWGTINSG--------------GVCCPAVLRYV 146
Query: 125 EVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG--GLDSCQGDSGGPLACPLPDGRYY 182
+ +T C Y S+ + +C G DSCQGDSGGPL+ G +
Sbjct: 147 TLNITTNAFCDAVYT----SDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFS 202
Query: 183 LCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L GI SWG+GCA + GVY+ V ++ W+ +
Sbjct: 203 LVGIVSWGIGCASG-YPGVYSRVGFHAGWITDTI 235
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSYIITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSYIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 242 DIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLP--HILQAAEV 298
DIALLEL P + V + LP T + ++GWG + LP L+ +V
Sbjct: 91 DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKV 150
Query: 299 PLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
P+ C Y + Y+ + +C G Q DSC+GDSGGPL C + +G +
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQR--DSCKGDSGGPLVCKV-NGTWL 207
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 105 ISGWGRLSEGGSLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQ 158
++GWG + LP L+ +VP+ C Y + Y+ + +C G Q
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ 186
Query: 159 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
DSC+GDSGGPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+
Sbjct: 187 R--DSCKGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 81/195 (41%), Gaps = 17/195 (8%)
Query: 201 VYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDK-------SIYKNDIALLELTRPFK 253
V T C S + +S R R T S ND+A+L+L+
Sbjct: 36 VLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIP 95
Query: 254 FNEFVSPICLPNPGLT-VTADVGLISGWGRLSEGGS-LPHILQAAEVPLTPKEECRRSYA 311
+ L G V ++GWG SEGGS P L VP+ + CR Y
Sbjct: 96 SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG 155
Query: 312 VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFY 371
+ +N + C G GG DSCQGD GGP+ D L G SWG GCARP++
Sbjct: 156 TSAITNQM----FCAGVSSGGKDSCQGDXGGPIV----DSSNTLIGAVSWGNGCARPNYS 207
Query: 372 GVYTLVSCYSDWVKS 386
GVY V ++ +
Sbjct: 208 GVYASVGALRSFIDT 222
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 105 ISGWGRLSEGGS-LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG SEGGS P L VP+ + CR Y + +N + C G GG DS
Sbjct: 120 VAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQM----FCAGVSSGGKDS 175
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGD GGP+ D L G SWG GCARP++ GVY V ++ +
Sbjct: 176 CQGDXGGPIV----DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDT 222
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSRIITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C +G DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAYGLEGKGDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GC + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C +G D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAYGLEGKGD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GC + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSWIITSNMF-----CAGYLEGGKDSCQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSWIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 172 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 223
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 212 VKSILYARHEQRRRVERIYTDFYDKSIY--KNDIALLELTRPFKFNEFVSPICLP-NPGL 268
V+ ++ + RRV ++ D+ Y + DIALLEL + PICLP N
Sbjct: 63 VEELMKLGNHPIRRVS-VHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF 121
Query: 269 TVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+G +SG+G + E + H L+ +P+ + C + +Q C G
Sbjct: 122 YDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 179
Query: 329 KQGGLDSCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
D+CQGDSGG A P+ R+ GI SWG+GC+R YG YT V Y DW+K
Sbjct: 180 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKK 236
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL + PICLP+ D+GL+ G +SG+G + E
Sbjct: 95 IALLELENSVTLGPNLLPICLPDN--DTFYDLGLM------------GYVSGFGVMEE-- 138
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ H L+ +P+ + C + +Q C G D+CQGDSGG A
Sbjct: 139 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 198
Query: 176 LPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
P+ R+ GI SWG+GC+R YG YT V Y DW+K
Sbjct: 199 DPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKK 236
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CVGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CVGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 80/159 (50%), Gaps = 21/159 (13%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ + NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSNTLNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ +Y SN C G + G DSCQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGLEGG--DSCQGDSGGPVVC--- 181
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 182 SGK--LQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTI 217
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ +Y SN C G + G D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF-----CAGLEGG--D 169
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
SCQGDSGGP+ C G+ L GI SWG GCA+ + GVYT V Y W+K + +
Sbjct: 170 SCQGDSGGPVVC---SGK--LQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTIASN 220
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGD+GGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDAGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGD+GGP+ C G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 172 ACQGDAGGPVVC---SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT + Y W+K +
Sbjct: 184 SGK--LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + G YT + Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTI 220
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 212 VKSILYARHEQRRRVERIYTDFYDKSIY--KNDIALLELTRPFKFNEFVSPICLP-NPGL 268
V+ ++ + RRV ++ D+ Y + DIALLEL + PICLP N
Sbjct: 152 VEELMKLGNHPIRRVS-VHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF 210
Query: 269 TVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+G +SG+G + E + H L+ +P+ + C + +Q C G
Sbjct: 211 YDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 268
Query: 329 KQGGLDSCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D+CQGDSGG A P+ R+ GI SWG+GC+R YG YT V Y DW+K
Sbjct: 269 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 326
Query: 388 L 388
+
Sbjct: 327 M 327
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL + PICLP+ D+GL+ G +SG+G + E
Sbjct: 184 IALLELENSVTLGPNLLPICLPDN--DTFYDLGLM------------GYVSGFGVMEE-- 227
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ H L+ +P+ + C + +Q C G D+CQGDSGG A
Sbjct: 228 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 287
Query: 176 LPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
P+ R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 288 DPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L N V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLNSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGD+GGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKDACQGDAGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CAGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGD+GGP+ C G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 172 ACQGDAGGPVVC---SGK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 212 VKSILYARHEQRRRVERIYTDFYDKSIY--KNDIALLELTRPFKFNEFVSPICLP-NPGL 268
V+ ++ + RRV ++ D+ Y + DIALLEL + PICLP N
Sbjct: 220 VEELMKLGNHPIRRVS-VHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF 278
Query: 269 TVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+G +SG+G + E + H L+ +P+ + C + +Q C G
Sbjct: 279 YDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 336
Query: 329 KQGGLDSCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D+CQGDSGG A P+ R+ GI SWG+GC+R YG YT V Y DW+K
Sbjct: 337 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 394
Query: 388 L 388
+
Sbjct: 395 M 395
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL + PICLP+ D+GL+ G +SG+G + E
Sbjct: 252 IALLELENSVTLGPNLLPICLPDN--DTFYDLGLM------------GYVSGFGVMEE-- 295
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ H L+ +P+ + C + +Q C G D+CQGDSGG A
Sbjct: 296 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 355
Query: 176 LPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
P+ R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 356 DPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 242 DIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLP--HILQAAEV 298
DIALLEL P + V + LP T + ++GWG + LP L+ +V
Sbjct: 91 DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKV 150
Query: 299 PLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
P+ C Y + Y+ + +C G Q DSC+GDSGGPL C + +G +
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQR--DSCKGDSGGPLVCKV-NGTWL 207
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWV 384
G+ SW GCA+P+ G+YT V+ Y DW+
Sbjct: 208 QAGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 105 ISGWGRLSEGGSLP--HILQAAEVPLTPKEECRRSYAVAGYS----NYLNQCQVCTGTKQ 158
++GWG + LP L+ +VP+ C Y + Y+ + +C G Q
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ 186
Query: 159 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWV 212
DSC+GDSGGPL C + +G + G+ SW GCA+P+ G+YT V+ Y DW+
Sbjct: 187 R--DSCKGDSGGPLVCKV-NGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 212 VKSILYARHEQRRRVERIYTDFYDKSIY--KNDIALLELTRPFKFNEFVSPICLP-NPGL 268
V+ ++ + RRV ++ D+ Y + DIALLEL + PICLP N
Sbjct: 152 VEELMKLGNHPIRRVS-VHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF 210
Query: 269 TVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+G +SG+G + E + H L+ +P+ + C + +Q C G
Sbjct: 211 YDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 268
Query: 329 KQGGLDSCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D+CQGD+GG A P+ R+ GI SWG+GC+R YG YT V Y DW+K
Sbjct: 269 PSLKQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 326
Query: 388 L 388
+
Sbjct: 327 M 327
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A EL + PICLP+ D+GL+ G +SG+G + E
Sbjct: 184 IALLELENSVTLGPNLLPICLPDN--DTFYDLGLM------------GYVSGFGVMEE-- 227
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ H L+ +P+ + C + +Q C G D+CQGD+GG A
Sbjct: 228 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVR 287
Query: 176 LPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
P+ R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 288 DPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHIL 293
+ K Y D AL++L +P P ++GWG EGGS L
Sbjct: 81 FTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYL 135
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDSCQGDSGGPLACPLPDGR 352
A VP CR S + +N + +C G GG+D+CQGDSGGP+
Sbjct: 136 LKANVPFVSDAACRSSSSFILVANEM----ICAGYPDTGGVDTCQGDSGGPMFRKDNADE 191
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
+ GI SWG GCARP + GVYT VS ++ + S
Sbjct: 192 WIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 225
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDS 163
++GWG EGGS L A VP CR S + +N + +C G GG+D+
Sbjct: 119 VAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEM----ICAGYPDTGGVDT 174
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGP+ + GI SWG GCARP + GVYT VS ++ + S
Sbjct: 175 CQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 225
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 242 DIALLELTRPFKFNEF-VSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
D AL++L +P ++ N G T T ++GWG EGGS L A VP
Sbjct: 82 DWALIKLAQPINQPTLKIATTTAYNQG-TFT-----VAGWGANREGGSQQRYLLKANVPF 135
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
CR +Y + + ++C G GG+D+CQGDSGGP+ + GI S
Sbjct: 136 VSDAACRSAYG----NELVANEEICAGYDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVS 191
Query: 361 WGVGCARPDFYGVYTLVSCYSDWVKS 386
WG GCAR YGVYT VS ++ + S
Sbjct: 192 WGEGCARKGKYGVYTEVSTFASAIAS 217
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG EGGS L A VP CR +Y + + ++C G GG+D+C
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSAYG----NELVANEEICAGYDTGGVDTC 167
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
QGDSGGP+ + GI SWG GCAR YGVYT VS ++ + S
Sbjct: 168 QGDSGGPMFRKDNADEWIQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 217
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 229 IYTDFYDKSIYK-NDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLISGWGRLSEG 286
++ D+ + NDIALL+L P + + CLP G + + V ++GWGRL
Sbjct: 79 VHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTN 138
Query: 287 GSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLAC 346
G+ P ILQ ++ + C + + + + +C G G + SC GDSGGPL C
Sbjct: 139 GASPDILQQGQLLVVDYATCSKP---GWWGSTVKTNMICAG-GDGIISSCNGDSGGPLNC 194
Query: 347 PLPDGRYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKSIL 388
+G++ + GI S+G +GC V+T VS Y DW+ S++
Sbjct: 195 QGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L P + + CLP G + + V ++GWGRL G
Sbjct: 94 IALLKLASPVSLTDKIQLGCLPAAGTILPNNY--------------VCYVTGWGRLQTNG 139
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ P ILQ ++ + C + + + + +C G G + SC GDSGGPL C
Sbjct: 140 ASPDILQQGQLLVVDYATCSKP---GWWGSTVKTNMICAG-GDGIISSCNGDSGGPLNCQ 195
Query: 176 LPDGRYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKSIL 216
+G++ + GI S+G +GC V+T VS Y DW+ S++
Sbjct: 196 GANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 235 DKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRL-SEGGSLPHIL 293
+ +I+ DI L+ L RP + + ++P+ LP+ +V V I GWG + S +LP +
Sbjct: 78 NDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSV-GSVCRIMGWGTITSPNATLPDVP 136
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
A + + C+ +Y L +C G +GG D+C+GDSGGPL C +G++
Sbjct: 137 HCANINILDYAVCQAAYK------GLAATTLCAGILEGGKDTCKGDSGGPLIC---NGQF 187
Query: 354 YLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYASVSA 394
GI S G CA+P G+YT V Y+DW++SI+ + A
Sbjct: 188 Q--GILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTDA 227
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP + + ++P+ LP+ +V V I GWG ++ S +LP
Sbjct: 90 RLNRPVRNSAHIAPLSLPSNPPSV-GSVCRIMGWGTIT--------------SPNATLPD 134
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ A + + C+ +Y L +C G +GG D+C+GDSGGPL C +G
Sbjct: 135 VPHCANINILDYAVCQAAYK------GLAATTLCAGILEGGKDTCKGDSGGPLIC---NG 185
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
++ GI S G CA+P G+YT V Y+DW++SI+
Sbjct: 186 QFQ--GILSVGGNPCAQPRKPGIYTKVFDYTDWIQSII 221
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 79/159 (49%), Gaps = 18/159 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRL-SEGGSL 289
Y+ Y NDI L++L V+ I LP T A G LISGWG S G S
Sbjct: 76 YNSETYNNDIMLIKLKSAASLXSRVASISLP----TSCASAGTQCLISGWGNTKSSGTSY 131
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +L+ + P+ C+ + + SN C G +GG D+CQGDSGGP+ C
Sbjct: 132 PDVLKCLKAPILSDSSCKSASSFIITSNMF-----CVGYLEGGKDACQGDSGGPVVC--- 183
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 184 SGK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
LISGWG S G S P +L+ + P+ C+ + + SN C G +GG D
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF-----CVGYLEGGKD 171
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGP+ C G+ L GI SWG GCA+ + G YT V Y W+K +
Sbjct: 172 ACQGDSGGPVVC---SGK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 19/178 (10%)
Query: 221 EQRRRVERI--YTDF-YDKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLT 269
E + VE + + D+ D + NDIALL++ R + + + ICLP +P
Sbjct: 73 EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFG 132
Query: 270 VTADVGLISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+ + I+G+G+ + L P L+ V L EC++ + Y + + +C
Sbjct: 133 TSCE---ITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAAD 186
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
Q DSCQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 187 PQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + ICLP +P + + I+G+G+ +
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCE---ITGFGKEAST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 19/178 (10%)
Query: 221 EQRRRVERI--YTDF-YDKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLT 269
E + VE + + D+ D + NDIALL++ R + + + ICLP +P
Sbjct: 73 EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFG 132
Query: 270 VTADVGLISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+ + I+G+G+ + L P L+ V L EC++ + Y + + +C
Sbjct: 133 TSCE---ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAAD 186
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
Q DSCQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 187 PQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 19/178 (10%)
Query: 221 EQRRRVERI--YTDF-YDKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLT 269
E + VE + + D+ D + NDIALL++ R + + + ICLP +P
Sbjct: 73 EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFG 132
Query: 270 VTADVGLISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+ + I+G+G+ + L P L+ V L EC++ + Y + + +C
Sbjct: 133 TSCE---ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAAD 186
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
Q DSCQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 187 PQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + ICLP +P + + I+G+G+ +
Sbjct: 113 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCE---ITGFGKENST 169
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 170 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 226
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 227 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 266
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 160 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 216
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 217 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 266
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + ICLP +P + + I+G+G+ +
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCE---ITGFGKENST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVP 299
NDIAL++L+R + + V LP G + + ISGWGRL GG LP LQ A +P
Sbjct: 105 NDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLP 164
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
+ E C + Y G + + + VC G T+ G C GDSGGPL CP DG + + G
Sbjct: 165 VVDYEHCSQ-YDWWGIT--VKKTMVCAGGDTRSG----CDGDSGGPLNCPAADGSWQVHG 217
Query: 358 ITSW--GVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+TS+ GC V+T VS + DW+ + ++
Sbjct: 218 VTSFVSAFGCNTIKKPTVFTRVSAFIDWINETIASN 253
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLD 162
ISGWGRL GG LP LQ A +P+ E C + Y G + + + VC G T+ G
Sbjct: 142 ISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQ-YDWWGIT--VKKTMVCAGGDTRSG--- 195
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
C GDSGGPL CP DG + + G+TS+ GC V+T VS + DW+ +
Sbjct: 196 -CDGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINETI 250
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + ICLP +P + + I+G+G+
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCE---ITGFGKEQST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 239 YKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRL-SEGGSLPHILQAAE 297
+ +DI L+ L + V P+ L N V +ISGWG + S + P+ L AE
Sbjct: 85 HSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKC-IISGWGTVTSPQENFPNTLNCAE 143
Query: 298 VPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
V + + +C R+Y + + VC G+ G D+CQGDSGGPL C DG L G
Sbjct: 144 VKIYSQNKCERAYP-----GKITEGMVCAGSSNGA-DTCQGDSGGPLVC---DG--MLQG 192
Query: 358 ITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
ITSWG C +P+ GVYT + Y+ W+K +
Sbjct: 193 ITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 13/115 (11%)
Query: 104 LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
+ISGWG + S + P+ L AEV + + +C R+Y + + VC G+ G D
Sbjct: 121 IISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP-----GKITEGMVCAGSSNGA-D 174
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
+CQGDSGGPL C DG L GITSWG C +P+ GVYT + Y+ W+K +
Sbjct: 175 TCQGDSGGPLVC---DG--MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 19/178 (10%)
Query: 221 EQRRRVERI--YTDF-YDKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLT 269
E + VE + + D+ D + NDIALL++ R + + + ICLP +P
Sbjct: 73 EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFG 132
Query: 270 VTADVGLISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
+ + I+G+G+ + L P L+ V L EC++ + Y + + +C
Sbjct: 133 TSCE---ITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAAD 186
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
Q D+CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 187 PQWKTDACQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q D+
Sbjct: 137 ITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDA 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 221 EQRRRVER-IYTDFYDKSIYKNDIALLELTRP----FKFNEFVSPICLPNPGLTVTADVG 275
EQ +V++ I +D Y NDIALL+L + ++ V ICLP L +
Sbjct: 87 EQTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRAICLPEANLQLPDWTE 146
Query: 276 L-ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG- 332
+SG+G+ L+ V L P C + ++ + +C G + G
Sbjct: 147 CELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFL---FNKTVTNNMLCAGDTRSGE 203
Query: 333 -----LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D+CQGDSGGPL C + D L GI SWGVGC D GVYT V+ Y W++
Sbjct: 204 IYPNVHDACQGDSGGPLVC-MNDNHMTLLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDN 262
Query: 388 LY 389
++
Sbjct: 263 MH 264
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 71 VSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSL-PHILQAAEVPLT 129
V ICLP L + W +SG+G+ L+ V L
Sbjct: 129 VRAICLPEANLQ-------LPDWTECE-------LSGYGKHKSSSPFYSEQLKEGHVRLY 174
Query: 130 PKEECRRSYAVAGYSNYLNQCQVCTGTKQGG------LDSCQGDSGGPLACPLPDGRYYL 183
P C + ++ + +C G + G D+CQGDSGGPL C + D L
Sbjct: 175 PSSRCAPKFL---FNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVC-MNDNHMTL 230
Query: 184 CGITSWGVGCARPDFYGVYTLVSCYSDWVKSILY 217
GI SWGVGC D GVYT V+ Y W++ ++
Sbjct: 231 LGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNMH 264
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHIL 293
+ K Y D AL++L +P P ++GWG EGGS L
Sbjct: 81 FTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYL 135
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
A VP CR S + +N + +C G D+CQGDSGGP+ +
Sbjct: 136 LKANVPFVSDAACRSSSSFILVANEM----ICAGYDTKQEDTCQGDSGGPMFRKDNADEW 191
Query: 354 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
GI SWG GCAR YGVYT VS ++ + S
Sbjct: 192 VQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 224
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG EGGS L A VP CR S + +N + +C G D+C
Sbjct: 119 VAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEM----ICAGYDTKQEDTC 174
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
QGDSGGP+ + GI SWG GCAR YGVYT VS ++ + S
Sbjct: 175 QGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 224
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEF-VSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHI 292
+ K Y D AL++L +P ++ N G T T ++GWG EGGS
Sbjct: 76 FTKETYGKDWALIKLAQPINQPTLKIATTTAYNQG-TFT-----VAGWGANREGGSQQRY 129
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
L A VP CR S + +N + +C G D+CQGDSGGP+
Sbjct: 130 LLKANVPFVSDAACRSSSSFILVANEM----ICAGYDTKQEDTCQGDSGGPMFRKDNADE 185
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
+ GI SWG GCAR YGVYT VS ++ + S
Sbjct: 186 WVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG EGGS L A VP CR S + +N + +C G D+C
Sbjct: 114 VAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEM----ICAGYDTKQEDTC 169
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
QGDSGGP+ + GI SWG GCAR YGVYT VS ++ + S
Sbjct: 170 QGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 242 DIALLELTRPFKFNEF-VSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
D AL++L +P ++ N G T T ++GWG EGGS L A VP
Sbjct: 82 DWALIKLAQPINQPTLKIATTTAYNQG-TFT-----VAGWGANREGGSQQRYLLKANVPF 135
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
CR +Y + + ++C G GG+D+CQGDSGGP+ + GI
Sbjct: 136 VSDAACRSAYG----NELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIV 191
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKS 386
SWG GCARP + GVYT VS ++ + S
Sbjct: 192 SWGYGCARPGYPGVYTEVSTFASAIAS 218
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDS 163
++GWG EGGS L A VP CR +Y + + ++C G GG+D+
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSAYG----NELVANEEICAGYPDTGGVDT 167
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGP+ + GI SWG GCARP + GVYT VS ++ + S
Sbjct: 168 CQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 242 DIALLELTRPFKFNEF-VSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
D AL++L +P ++ N G T T ++GWG EGGS L A VP
Sbjct: 82 DWALIKLAQPINQPTLKIATTTAYNQG-TFT-----VAGWGANREGGSQQRYLLKANVPF 135
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
CR +Y + + ++C G GG+D+CQGDSGGP+ + GI
Sbjct: 136 VSDAACRSAYG----NELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIV 191
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKS 386
SWG GCARP + GVYT VS ++ + S
Sbjct: 192 SWGYGCARPGYPGVYTEVSTFASAIAS 218
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDS 163
++GWG EGGS L A VP CR +Y + + ++C G GG+D+
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSAYG----NELVANEEICAGYPDTGGVDT 167
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGP+ + GI SWG GCARP + GVYT VS ++ + S
Sbjct: 168 CQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 94/215 (43%), Gaps = 36/215 (16%)
Query: 197 DFYGVYTLVSCYSD----WVKSILYARHE---QRRRVERI--YTDF----------YDKS 237
D V T CY+D W+ + E Q R V + + DF +
Sbjct: 35 DRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPED 94
Query: 238 IYKNDIALLELTRPFKFNEFVSPICLP--NPGLTVTADVGLISGWGRLSE-GGSLPHILQ 294
Y ND+ LL L++P + V PI LP P L T L SGWG + P LQ
Sbjct: 95 DYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTC---LASGWGSTTPIKFKYPDDLQ 151
Query: 295 AAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
+ L P E+C +++ + + +C G GG +C+ DSGGPL C DG
Sbjct: 152 CVNLKLLPNEDCDKAHEMK-----VTDAMLCAGEMDGGSYTCEHDSGGPLIC---DG--I 201
Query: 355 LCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
L GITSWG C P VYT + +S W++ +
Sbjct: 202 LQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 86/216 (39%), Gaps = 40/216 (18%)
Query: 5 QDFVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELTRP 64
+F+E P H R S+ P + TP+ E S + L++P
Sbjct: 57 NNFLEDEPSDQH--------RLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKP 108
Query: 65 FKFNEFVSPICLP--NPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE-GGSLPHIL 121
+ V PI LP P L T L SGWG + P L
Sbjct: 109 ADITDVVKPITLPTEEPKLGSTC------------------LASGWGSTTPIKFKYPDDL 150
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
Q + L P E+C +++ + + +C G GG +C+ DSGGPL C DG
Sbjct: 151 QCVNLKLLPNEDCDKAHEMK-----VTDAMLCAGEMDGGSYTCEHDSGGPLIC---DG-- 200
Query: 182 YLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
L GITSWG C P VYT + +S W++ +
Sbjct: 201 ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVP 299
NDIAL++L+R + + V LP G + + ISGWGRL GG LP LQ A +P
Sbjct: 92 NDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLP 151
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCG 357
E C + + + + VC G T+ G C GDSGGPL CP DG + + G
Sbjct: 152 TVDYEHCSQ---WDWWGITVKKTMVCAGGDTRSG----CNGDSGGPLNCPAADGSWQVHG 204
Query: 358 ITSW--GVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+TS+ GC V+T VS + DW+ + ++
Sbjct: 205 VTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN 240
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLD 162
ISGWGRL GG LP LQ A +P E C + + + + VC G T+ G
Sbjct: 129 ISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQ---WDWWGITVKKTMVCAGGDTRSG--- 182
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
C GDSGGPL CP DG + + G+TS+ GC V+T VS + DW+ + +
Sbjct: 183 -CNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN 240
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHI 292
++ + +NDIAL++L + ++ + CLP + D ++GWGRL G +
Sbjct: 84 WNALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADK 143
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ P+ C R + + + + VC G G + +C GDSGGPL C L +G
Sbjct: 144 LQQGLQPVVDHATCSR---IDWWGFRVKKTMVCAG-GDGVISACNGDSGGPLNCQLENGS 199
Query: 353 YYLCGITSWGV--GCARPDFYGVYTLVSCYSDWVKSIL 388
+ + GI S+G GC VYT VS Y DW+ +
Sbjct: 200 WEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKM 237
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGRL G + LQ P+ C R + + + + VC G G + +C
Sbjct: 128 VTGWGRLWTNGPIADKLQQGLQPVVDHATCSR---IDWWGFRVKKTMVCAG-GDGVISAC 183
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGV--GCARPDFYGVYTLVSCYSDWVKSIL 216
GDSGGPL C L +G + + GI S+G GC VYT VS Y DW+ +
Sbjct: 184 NGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKM 237
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+ +
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCE---ITGFGKENST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+ +
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCE---ITGFGKENST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+ +
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCE---ITGFGKENST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+ +
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCE---ITGFGKENST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCE---ITGFGKEQST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+ +
Sbjct: 105 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCE---ITGFGKENST 161
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 162 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 218
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 219 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 258
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ + L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 152 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 208
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 209 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 258
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCE---ITGFGKEQST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGDSGGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 218 ARHEQRRRVERIYTDF----YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT-A 272
R E +++ + +F YD + + D+ LL+LT K N++V+ + LP G V
Sbjct: 58 TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117
Query: 273 DVGLISGWGRLSEGGSLPHILQAAEVPLTPKEEC--RRSYAVAGYSNYLNQCQVCTGTKQ 330
+ ++GWGR S L+ E+ + ++ C R Y ++ + VC G+ +
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY---NFNPVIGMNMVCAGSLR 174
Query: 331 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV--GCARPDFYGVYTLVS-CYSDWVKSI 387
GG DSC GDSG PL C +G + G+TS+G+ C P GVY L+S + +W+
Sbjct: 175 GGRDSCNGDSGSPLLC---EGVFR--GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229
Query: 388 LYASV 392
+ +V
Sbjct: 230 IKGAV 234
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 36 ILQAAEVPLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGR 95
+L E P + R + +LT K N++V+ + LP G V G
Sbjct: 67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKP--------GT 118
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEEC--RRSYAVAGYSNYLNQCQVC 153
+ + ++GWGR S L+ E+ + ++ C R Y ++ + VC
Sbjct: 119 MCQ------VAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY---NFNPVIGMNMVC 169
Query: 154 TGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV--GCARPDFYGVYTLVS-CYSD 210
G+ +GG DSC GDSG PL C +G + G+TS+G+ C P GVY L+S + +
Sbjct: 170 AGSLRGGRDSCNGDSGSPLLC---EGVFR--GVTSFGLENKCGDPRGPGVYILLSKKHLN 224
Query: 211 WV 212
W+
Sbjct: 225 WI 226
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 242 DIALLELTRPFKFNEF-VSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPL 300
D AL++L +P ++ N G T T ++GWG EGGS L A VP
Sbjct: 82 DWALIKLAQPINQPTLKIATTTAYNQG-TFT-----VAGWGANREGGSQQRYLLKANVPF 135
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
CR +Y + + ++C G GG+D CQGDSGGP+ + GI
Sbjct: 136 VSDAACRSAYG----NELVANEEICAGYPDTGGVDPCQGDSGGPMFRKDNADEWIQVGIV 191
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKS 386
SWG GCARP + GVYT VS ++ + S
Sbjct: 192 SWGYGCARPGYPGVYTEVSTFASAIAS 218
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG-TKQGGLDS 163
++GWG EGGS L A VP CR +Y + + ++C G GG+D
Sbjct: 112 VAGWGANREGGSQQRYLLKANVPFVSDAACRSAYG----NELVANEEICAGYPDTGGVDP 167
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGDSGGP+ + GI SWG GCARP + GVYT VS ++ + S
Sbjct: 168 CQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 235 DKSIYKNDIALLELT----RPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEG 286
D + NDIALL++ R + + + I LP +P + + I+G+G+
Sbjct: 90 DTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCE---ITGFGKEQST 146
Query: 287 GSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLA 345
L P L+ V L EC++ + Y + + +C Q DSCQGD+GGPL
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDAGGPLV 203
Query: 346 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 204 CSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I+G+G+ L P L+ V L EC++ + Y + + +C Q DS
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDS 193
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
CQGD+GGPL C L GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 194 CQGDAGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS 243
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTAD---VGLISGWGR 282
+ + + YD +DIALL+L R F + + PICLP L A+ ++GWG
Sbjct: 208 KHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWG- 266
Query: 283 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG--LDSCQGDS 340
+E GS +L A VPL P+ C ++Y A + Q+C G GG DSC+GDS
Sbjct: 267 TTENGSSSDVLLQANVPLQPRSACSQAYRRA-----VPLSQLCVG---GGDLQDSCKGDS 318
Query: 341 GGPLACPLP-----DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GGPL P + GI S G V C + G+YT V Y W+ + ++
Sbjct: 319 GGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASN 375
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Query: 54 YAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSE 113
+ +A +L R F + + PICLP + +E ++GWG +E
Sbjct: 222 HDIALLKLNRSVPFQKHIKPICLP-----------ITDELKEKAEQISTYFVTGWG-TTE 269
Query: 114 GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG--LDSCQGDSGGP 171
GS +L A VPL P+ C ++Y A + Q+C G GG DSC+GDSGGP
Sbjct: 270 NGSSSDVLLQANVPLQPRSACSQAYRRA-----VPLSQLCVG---GGDLQDSCKGDSGGP 321
Query: 172 LACPLP-----DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L P + GI S G V C + G+YT V Y W+ +
Sbjct: 322 LQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTM 372
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVA 57
T+E GS +L A VPL P+ C ++Y A
Sbjct: 267 TTENGSSSDVLLQANVPLQPRSACSQAYRRA 297
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 216 LYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG 275
LY +Q +E++ + ++ DI L++L + NE V PICLP+ VG
Sbjct: 164 LYVGKKQEVEIEKVIFHPDNSTV---DIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVG 220
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSY------------AVAGYSNYLNQCQ 323
+SGWGR + H L+ +P+ +E+C + Y + G LN+
Sbjct: 221 YVSGWGRNANLNFTEH-LKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHT 279
Query: 324 VCTGTKQGGLDSCQGDSGGPLAC-PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
C G + D+C GD+G A D +Y GI S+ C R YGVY V+ D
Sbjct: 280 FCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSC-RTAEYGVYVRVTSILD 338
Query: 383 WVKSIL 388
W+++ +
Sbjct: 339 WIQTTI 344
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 30/170 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L + NE V PICLP+ +VGL VG +SGWGR + H
Sbjct: 192 KLKQKVPVNERVMPICLPSKDY---VNVGL------------VGYVSGWGRNANLNFTEH 236
Query: 120 ILQAAEVPLTPKEECRRSY------------AVAGYSNYLNQCQVCTGTKQGGLDSCQGD 167
L+ +P+ +E+C + Y + G LN+ C G + D+C GD
Sbjct: 237 -LKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGD 295
Query: 168 SGGPLAC-PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+G A D +Y GI S+ C R YGVY V+ DW+++ +
Sbjct: 296 AGSAFAVHDKDDDTWYAAGILSFDKSC-RTAEYGVYVRVTSILDWIQTTI 344
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 42/226 (18%)
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARH-EQRRRVERI-------- 229
G+ ++CG G R DF V T C + L A + +R R +++
Sbjct: 24 GKSHICG----GF-LVREDF--VLTAAHCLGSSINVTLGAHNIMERERTQQVIPVRRPIP 76
Query: 230 YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLP------NPGLTVTADVGLISGWGRL 283
+ D+ D+++ NDI LL+LTR + VSPI LP PG+ + ++GWGRL
Sbjct: 77 HPDYNDETL-ANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCS-----VAGWGRL 130
Query: 284 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 343
LQ ++ + +E+C +A + NY+ Q+C G +S GDSGGP
Sbjct: 131 GVNMPSTDKLQEVDLEVQSEEKC-----IARFKNYIPFTQICAGDPSKRKNSFSGDSGGP 185
Query: 344 LACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
L C GI S+G PD VYT +S + W+ S +
Sbjct: 186 LVC-----NGVAQGIVSYGRNDGTTPD---VYTRISSFLSWIHSTM 223
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+LTR + VSPI LP V G++ ++GWGRL
Sbjct: 93 KLTRKADITDKVSPINLPRSLAEVKP--GMMCS------------VAGWGRLGVNMPSTD 138
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ ++ + +E+C +A + NY+ Q+C G +S GDSGGPL C
Sbjct: 139 KLQEVDLEVQSEEKC-----IARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVC----- 188
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G PD VYT +S + W+ S +
Sbjct: 189 NGVAQGIVSYGRNDGTTPD---VYTRISSFLSWIHSTM 223
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 218 ARHEQRRRVERIYTDF----YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT-A 272
R E +++ + +F YD + + D+ LL+LT K N++V+ + LP G V
Sbjct: 58 TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117
Query: 273 DVGLISGWGRLSEGGSLPHILQAAEVPLTPKEEC--RRSYAVAGYSNYLNQCQVCTGTKQ 330
+ ++GWGR S L+ + + ++ C R Y ++ + VC G+ +
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHY---NFNPVIGMNMVCAGSLR 174
Query: 331 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV--GCARPDFYGVYTLVS-CYSDWVKSI 387
GG DSC GDSG PL C +G + G+TS+G+ C P GVY L+S + +W+
Sbjct: 175 GGRDSCNGDSGSPLLC---EGVFR--GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229
Query: 388 LYASV 392
+ +V
Sbjct: 230 IKGAV 234
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 36 ILQAAEVPLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGR 95
+L E P + R + +LT K N++V+ + LP G V G
Sbjct: 67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKP--------GT 118
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEEC--RRSYAVAGYSNYLNQCQVC 153
+ + ++GWGR S L+ + + ++ C R Y ++ + VC
Sbjct: 119 MCQ------VAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHY---NFNPVIGMNMVC 169
Query: 154 TGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV--GCARPDFYGVYTLVS-CYSD 210
G+ +GG DSC GDSG PL C +G + G+TS+G+ C P GVY L+S + +
Sbjct: 170 AGSLRGGRDSCNGDSGSPLLC---EGVFR--GVTSFGLENKCGDPRGPGVYILLSKKHLN 224
Query: 211 WV 212
W+
Sbjct: 225 WI 226
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 239 YKNDIALLELTRPFK-FNEFVSPICLPNPGLTVTADVG---LISGWGRLS-EGGSLPHIL 293
Y +D+ LL LT P + V + LP T +VG L SGWG + E S P L
Sbjct: 93 YSHDLMLLRLTEPADTITDAVKVVELP----TEEPEVGSTCLASGWGSIEPENFSFPDDL 148
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
Q ++ + P +EC++++ V ++++ +C G +GG D+C GDSGGPL C DG
Sbjct: 149 QCVDLKILPNDECKKAH-VQKVTDFM----LCVGHLEGGKDTCVGDSGGPLMC---DG-- 198
Query: 354 YLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
L G+TSWG V C P+ V V Y W++ +
Sbjct: 199 VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 76 LPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLS-EGGSLPHILQAAEVPLTPKEEC 134
L P T+T V ++ E L SGWG + E S P LQ ++ + P +EC
Sbjct: 102 LTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDEC 161
Query: 135 RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWG-VGC 193
++++ V ++++ +C G +GG D+C GDSGGPL C DG L G+TSWG V C
Sbjct: 162 KKAH-VQKVTDFM----LCVGHLEGGKDTCVGDSGGPLMC---DG--VLQGVTSWGYVPC 211
Query: 194 ARPDFYGVYTLVSCYSDWVKSIL 216
P+ V V Y W++ +
Sbjct: 212 GTPNKPSVAVRVLSYVKWIEDTI 234
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 21/220 (9%)
Query: 182 YLCGIT----SWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDKS 237
Y CG+T W V A D + +S K +L + R E+ + S
Sbjct: 23 YFCGLTLINQEWVVTAAHCDSTNFQMQLGVHS---KKVLNEDEQTRNPKEKFICPNKNMS 79
Query: 238 -IYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLS-EGGSLPHILQA 295
+ DI L++L +P ++ ++P+ LP+ +V V I GWG ++ + P +
Sbjct: 80 EVLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSV-GSVCRIMGWGSITIPNETYPDVPYC 138
Query: 296 AEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYL 355
A + L E C+ Y+ + +C G +GG D+C GDSGGPL C +G++
Sbjct: 139 ANINLVDYEVCQ-----GAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPLIC---NGQFQ- 189
Query: 356 CGITSWGV-GCARPDFYGVYTLVSCYSDWVKSILYASVSA 394
GI S+G C + G+YT V Y+DW++ + + A
Sbjct: 190 -GIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDA 228
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L +P ++ ++P+ LP+ +V V I GWG ++ + + P
Sbjct: 90 KLDKPISNSKHIAPLSLPSNPPSV-GSVCRIMGWGSITIPNE--------------TYPD 134
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ A + L E C+ Y+ + +C G +GG D+C GDSGGPL C +G
Sbjct: 135 VPYCANINLVDYEVCQ-----GAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPLIC---NG 186
Query: 180 RYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVK 213
++ GI S+G C + G+YT V Y+DW++
Sbjct: 187 QFQ--GIVSYGAHSCGQGPKPGIYTNVFDYTDWIQ 219
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 226 VERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRL 283
V+ I+ + ++ + +NDIAL++L + + + CLP+ G + D ++GWGRL
Sbjct: 88 VDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRL 147
Query: 284 SEGGSLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 342
G + LQ P+ C +R + + + + VC G G + +C GDSGG
Sbjct: 148 YTNGPIAAELQQGLQPVVDYATCSQRDW----WGTTVKETMVCAG-GDGVISACNGDSGG 202
Query: 343 PLACPLPDGRYYLCGITSWGVGCARPDFYG--VYTLVSCYSDWVKSIL 388
PL C DG++ + GI S+G G + F V+T VS Y DW+ L
Sbjct: 203 PLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 56 VAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+A +L + + + CLP+ G + D ++GWGRL G
Sbjct: 106 IALIKLAETVELGDTIQVACLPSEGSLLPQDYPC--------------FVTGWGRLYTNG 151
Query: 116 SLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLAC 174
+ LQ P+ C +R + + + + VC G G + +C GDSGGPL C
Sbjct: 152 PIAAELQQGLQPVVDYATCSQRDW----WGTTVKETMVCAG-GDGVISACNGDSGGPLNC 206
Query: 175 PLPDGRYYLCGITSWGVGCARPDFYG--VYTLVSCYSDWVKSIL 216
DG++ + GI S+G G + F V+T VS Y DW+ L
Sbjct: 207 Q-ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 112 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
S G S P +LQ + P+ C+ SY N +C G QGG DSCQGDSGGP
Sbjct: 1 SSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNM-----ICVGFLQGGKDSCQGDSGGP 55
Query: 172 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 56 VVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 98
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 284 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 343
S G S P +LQ + P+ C+ SY N +C G QGG DSCQGDSGGP
Sbjct: 1 SSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNM-----ICVGFLQGGKDSCQGDSGGP 55
Query: 344 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 56 VVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 98
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGSLPHILQAAEVP 299
+D+ L++L RP ++FVS I LPN G T+ + GWG + + +L+ A +
Sbjct: 83 SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWG-YTGLINYDGLLRVAHLY 141
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
+ E+C + + LN+ ++C G ++ G C+GD GGPL C R L G+
Sbjct: 142 IMGNEKCSQHHR---GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL-GVI 197
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G GCA P+ G++ V+ Y+ W+ I+
Sbjct: 198 VPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGADVGLISGWGRLSEGGSLP 118
+L RP ++FVS I LPN G T+ + GWG GLI+ G
Sbjct: 89 KLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGY------TGLINYDG--------- 133
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+L+ A + + E+C + + LN+ ++C G ++ G C+GD GGPL C
Sbjct: 134 -LLRVAHLYIMGNEKCSQHHR---GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHK 189
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
R L G+ G GCA P+ G++ V+ Y+ W+ I+
Sbjct: 190 MRMVL-GVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGSLPHILQAAEVP 299
+D+ L++L RP ++FVS I LPN G T+ + GWG + + +L+ A +
Sbjct: 83 SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWG-YTGLINYDGLLRVAHLY 141
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
+ E+C + + LN+ ++C G ++ G C+GD GGPL C R L G+
Sbjct: 142 IMGNEKCSQHHR---GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL-GVI 197
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G GCA P+ G++ V+ Y+ W+ I+
Sbjct: 198 VPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGADVGLISGWGRLSEGGSLP 118
+L RP ++FVS I LPN G T+ + GWG GLI+ G
Sbjct: 89 KLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGY------TGLINYDG--------- 133
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+L+ A + + E+C + + LN+ ++C G ++ G C+GD GGPL C
Sbjct: 134 -LLRVAHLYIMGNEKCSQHHR---GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHK 189
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
R L G+ G GCA P+ G++ V+ Y+ W+ I+
Sbjct: 190 MRMVL-GVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 239 YKNDIALLELTRPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEGG-SLPHIL 293
+ +D+ LL L++P + V PI LP PG A SGWG ++ P L
Sbjct: 93 FSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLA-----SGWGSITPTRWQKPDDL 147
Query: 294 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 353
Q + L P E C + Y + +C G GG D+C+ DSGGPL C DG
Sbjct: 148 QCVFITLLPNENCAKVYL-----QKVTDVMLCAGEMGGGKDTCRDDSGGPLIC---DG-- 197
Query: 354 YLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAS 391
L G TS+G V C +P +YT + ++ W+K + +
Sbjct: 198 ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKN 236
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 61 LTRPFKFNEFVSPICLP----NPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGS 116
L++P + V PI LP PG A SGWG ++ + W +
Sbjct: 102 LSKPADITDVVKPIALPTKEPKPGSKCLA-----SGWGSITP-------TRWQK------ 143
Query: 117 LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPL 176
P LQ + L P E C + Y + +C G GG D+C+ DSGGPL C
Sbjct: 144 -PDDLQCVFITLLPNENCAKVYL-----QKVTDVMLCAGEMGGGKDTCRDDSGGPLIC-- 195
Query: 177 PDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
DG L G TS+G V C +P +YT + ++ W+K +
Sbjct: 196 -DG--ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 224 RRVERIYTDF------YDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTAD 273
RR +RI Y + ND+ L++L + + V + LP+ PG T T
Sbjct: 59 RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCT-- 116
Query: 274 VGLISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
+SGWG S + P L +V L ++C + Y + L +C G
Sbjct: 117 ---VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSK 168
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
++C GDSGGPL C R L G+ SWG C +P+ GVYT V ++ W+ +
Sbjct: 169 KNACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 105 ISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
+SGWG S + P L +V L ++C + Y + L +C G ++
Sbjct: 117 VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSKKNA 171
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 216
C GDSGGPL C R L G+ SWG C +P+ GVYT V ++ W+ +
Sbjct: 172 CNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 32/209 (15%)
Query: 201 VYTLVSCYSDWVKSILYARH-------EQRRRVER----------IYTDFYDKSIYK--N 241
V T CYS+ + +L + QRR V + I T+ ++ ++ N
Sbjct: 34 VITAAHCYSNNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSN 93
Query: 242 DIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSL-PHILQAAEVPL 300
D+ LL L+ P V I LP V + L SGWG + + H LQ + L
Sbjct: 94 DLMLLHLSEPADITGGVKVIDLPTKEPKVGSTC-LASGWGSTNPSEMVVSHDLQCVNIHL 152
Query: 301 TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
E+C + Y + + +C G +GG D+C GDSGGPL C DG L GITS
Sbjct: 153 LSNEKC-----IETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLIC---DG--VLQGITS 202
Query: 361 WGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
G CA+P +Y + ++ W+K ++
Sbjct: 203 GGATPCAKPKTPAIYAKLIKFTSWIKKVM 231
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 104 LISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
L SGWG + + H LQ + L E+C + Y + + +C G +GG D
Sbjct: 127 LASGWGSTNPSEMVVSHDLQCVNIHLLSNEKC-----IETYKDNVTDVMLCAGEMEGGKD 181
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
+C GDSGGPL C DG L GITS G CA+P +Y + ++ W+K ++
Sbjct: 182 TCAGDSGGPLIC---DG--VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM 231
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 201 VYTLVSCYSDW---VKSILYARHEQRRRVERIYTDF---------YDKSIYKNDIALLEL 248
V T SC+ V +++ ++ RRR + F YD ND+ LL+L
Sbjct: 36 VMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQL 95
Query: 249 TRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVPLTPKEECR 307
R V+ + LP TV A ++GWG GG L + V +TP+++CR
Sbjct: 96 DREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR 155
Query: 308 RSYAVAGYSNYLNQCQVCTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG- 364
+ VCTG T++GG+ C GD G PL C +G + G+ S+ +G
Sbjct: 156 PN-------------NVCTGVLTRRGGI--CNGDQGTPLVC---EGLAH--GVASFSLGP 195
Query: 365 CAR-PDFYGVYTLVSCYSDWVKSIL 388
C R PDF +T V+ + DW+ +L
Sbjct: 196 CGRGPDF---FTRVALFRDWIDGVL 217
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 27/116 (23%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLD 162
++GWG GG L + V +TP+++CR + VCTG T++GG+
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN-------------NVCTGVLTRRGGI- 170
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CAR-PDFYGVYTLVSCYSDWVKSIL 216
C GD G PL C +G + G+ S+ +G C R PDF +T V+ + DW+ +L
Sbjct: 171 -CNGDQGTPLVC---EGLAH--GVASFSLGPCGRGPDF---FTRVALFRDWIDGVL 217
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 201 VYTLVSCYSDW---VKSILYARHEQRRRVERIYTDF---------YDKSIYKNDIALLEL 248
V T SC+ V +++ ++ RRR + F YD ND+ LL+L
Sbjct: 36 VMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQL 95
Query: 249 TRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVPLTPKEECR 307
R V+ + LP TV A ++GWG GG L + V +TP+++CR
Sbjct: 96 DREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR 155
Query: 308 RSYAVAGYSNYLNQCQVCTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG- 364
+ VCTG T++GG+ C GD G PL C +G + G+ S+ +G
Sbjct: 156 PN-------------NVCTGVLTRRGGI--CNGDGGTPLVC---EGLAH--GVASFSLGP 195
Query: 365 CAR-PDFYGVYTLVSCYSDWVKSIL 388
C R PDF +T V+ + DW+ +L
Sbjct: 196 CGRGPDF---FTRVALFRDWIDGVL 217
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 27/116 (23%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLD 162
++GWG GG L + V +TP+++CR + VCTG T++GG+
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN-------------NVCTGVLTRRGGI- 170
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CAR-PDFYGVYTLVSCYSDWVKSIL 216
C GD G PL C +G + G+ S+ +G C R PDF +T V+ + DW+ +L
Sbjct: 171 -CNGDGGTPLVC---EGLAH--GVASFSLGPCGRGPDF---FTRVALFRDWIDGVL 217
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 224 RRVERIYTDF------YDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLTVTAD 273
RR +RI Y + ND+ L++L + + V + LP+ PG T T
Sbjct: 59 RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCT-- 116
Query: 274 VGLISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
+SGWG S + P L +V L ++C + Y + L +C G
Sbjct: 117 ---VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSK 168
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
++C GDSGGPL C R L G+ SWG C +P+ GVYT V ++ W+ +
Sbjct: 169 KNACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 105 ISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
+SGWG S + P L +V L ++C + Y + L +C G ++
Sbjct: 117 VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSKKNA 171
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 216
C GDSGGPL C R L G+ SWG C +P+ GVYT V ++ W+ +
Sbjct: 172 CNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 112 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
S G S P +LQ + P+ C+ SY N +C G +GG DSCQGDSGGP
Sbjct: 1 SSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQGDSGGP 55
Query: 172 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A
Sbjct: 56 VVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 98
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 284 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 343
S G S P +LQ + P+ C+ SY N +C G +GG DSCQGDSGGP
Sbjct: 1 SSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGN-----MICVGFLEGGKDSCQGDSGGP 55
Query: 344 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+ C +G+ L GI SWG GCA+ + GVYT V Y +W++ + A+
Sbjct: 56 VVC---NGQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 98
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 201 VYTLVSCYSDW---VKSILYARHEQRRRVERIYTDF---------YDKSIYKNDIALLEL 248
V T SC+ V +++ ++ RRR + F YD ND+ LL+L
Sbjct: 36 VMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQL 95
Query: 249 TRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGGSLPHILQAAEVPLTPKEECR 307
R V+ + LP TV A ++GWG GG L + V +TP+++CR
Sbjct: 96 DREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR 155
Query: 308 RSYAVAGYSNYLNQCQVCTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG- 364
+ VCTG T++GG+ C GD G PL C +G + G+ S+ +G
Sbjct: 156 PN-------------NVCTGVLTRRGGI--CNGDGGTPLVC---EGLAH--GVASFSLGP 195
Query: 365 CAR-PDFYGVYTLVSCYSDWVKSIL 388
C R PDF +T V+ + DW+ +L
Sbjct: 196 CGRGPDF---FTRVALFRDWIDGVL 217
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 27/116 (23%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG--TKQGGLD 162
++GWG GG L + V +TP+++CR + VCTG T++GG+
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN-------------NVCTGVLTRRGGI- 170
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CAR-PDFYGVYTLVSCYSDWVKSIL 216
C GD G PL C +G + G+ S+ +G C R PDF +T V+ + DW+ +L
Sbjct: 171 -CNGDGGTPLVC---EGLAH--GVASFSLGPCGRGPDF---FTRVALFRDWIDGVL 217
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLS-EGGSLPHILQA 295
+++ DI L+ L P K ++ ++P LP+ +V V I GWGR+S G+ P +
Sbjct: 83 TLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSV-GSVCRIMGWGRISPTEGTYPDVPHC 141
Query: 296 AEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYL 355
+ L E CR Y + +C G +GG D+C+GDSGGPL C +G++
Sbjct: 142 VNINLLEYEMCRAPYP--EFELPATSRTLCAGILEGGKDTCKGDSGGPLIC---NGQFQ- 195
Query: 356 CGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYASVSA 394
GI SWG CA+P YT V + DW+++I+ + A
Sbjct: 196 -GIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNTDA 234
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 105 ISGWGRLS-EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I GWGR+S G+ P + + L E CR Y + +C G +GG D+
Sbjct: 122 IMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYP--EFELPATSRTLCAGILEGGKDT 179
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
C+GDSGGPL C +G++ GI SWG CA+P YT V + DW+++I+
Sbjct: 180 CKGDSGGPLIC---NGQFQ--GIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 221 EQRRRVERIYTDFY---DKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-- 275
EQ V++I Y D DIALL L + N +V LP G T+ A+
Sbjct: 69 EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG-TILANNSPC 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
I+GWG G L LQ A +P C S + + + + VC G G
Sbjct: 128 YITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS---SYWGSTVKNSMVCAG-GDGVRSG 183
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 388
CQGDSGGPL C L +G+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 184 CQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 43 PLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADV 102
P ++ Y +A L + N +V LP G T+ A+
Sbjct: 81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG-TILAN-------------NSP 126
Query: 103 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
I+GWG G L LQ A +P C S + + + + VC G G
Sbjct: 127 CYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS---SYWGSTVKNSMVCAG-GDGVRS 182
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
CQGDSGGPL C L +G+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 183 GCQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 221 EQRRRVERIYTDFY---DKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-- 275
EQ V++I Y D DIALL L + N +V LP G T+ A+
Sbjct: 69 EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG-TILANNSPC 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
I+GWG G L LQ A +P C S + + + + VC G G
Sbjct: 128 YITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS---SYWGSTVKNSMVCAG-GDGVRSG 183
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 388
CQGDSGGPL C L +G+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 184 CQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 21/176 (11%)
Query: 43 PLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADV 102
P ++ Y +A L + N +V LP G + +
Sbjct: 81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANN--------------SP 126
Query: 103 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
I+GWG G L LQ A +P C S + + + + VC G G
Sbjct: 127 CYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS---SYWGSTVKNSMVCAG-GDGVRS 182
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
CQGDSGGPL C L +G+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 183 GCQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 22/172 (12%)
Query: 226 VERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICL----PNPGLTVTADVGLISGWG 281
V+ I Y + ND+ L++L R + + V PI + P+ G L+SGWG
Sbjct: 71 VKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKC-----LVSGWG 125
Query: 282 RL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDS 340
S P +LQ + + ++ C +Y ++ C G K G DSCQGDS
Sbjct: 126 TTKSPQVHFPKVLQCLNISVLSQKRCEDAYP-----RQIDDTMFCAGDK-AGRDSCQGDS 179
Query: 341 GGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GGP+ C L G+ SWG CARP+ GVYT + ++ W++ + A+
Sbjct: 180 GGPVVC-----NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQAN 226
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 78 NPGLTVTADVGLISGWGRLSEGADVGLISGWGRL-SEGGSLPHILQAAEVPLTPKEECRR 136
N + T DV I+ L+SGWG S P +LQ + + ++ C
Sbjct: 94 NRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCED 153
Query: 137 SYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWG-VGCAR 195
+Y ++ C G K G DSCQGDSGGP+ C L G+ SWG CAR
Sbjct: 154 AYP-----RQIDDTMFCAGDK-AGRDSCQGDSGGPVVC-----NGSLQGLVSWGDYPCAR 202
Query: 196 PDFYGVYTLVSCYSDWVKSILYA 218
P+ GVYT + ++ W++ + A
Sbjct: 203 PNRPGVYTNLCKFTKWIQETIQA 225
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 100/220 (45%), Gaps = 20/220 (9%)
Query: 182 YLCGIT----SWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDKS 237
+LCG T W V A D L +S K IL + R E+ + K
Sbjct: 24 FLCGGTLINQDWVVTAAHCDSNNFQLLFGVHS---KKILNEDEQTRDPKEKFFCPNRKKD 80
Query: 238 I-YKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSL-PHILQA 295
DI L++L +E ++P+ LP+ +V + V I GWG+ + P +
Sbjct: 81 DEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGS-VCRIMGWGKTIPTKEIYPDVPHC 139
Query: 296 AEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYL 355
A + + CR +Y+ +N +C G QGG D+C DSGGPL C +G +
Sbjct: 140 ANINILDHAVCRTAYSWRQVANT----TLCAGILQGGRDTCHFDSGGPLIC---NGIFQ- 191
Query: 356 CGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYASVSA 394
GI SWG C +P GVYT V Y DW+KSI+ + A
Sbjct: 192 -GIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIAGNKDA 230
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 105 ISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
I GWG+ + P + A + + CR +Y+ +N +C G QGG D+
Sbjct: 120 IMGWGKTIPTKEIYPDVPHCANINILDHAVCRTAYSWRQVANT----TLCAGILQGGRDT 175
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYARHE 221
C DSGGPL C +G + GI SWG C +P GVYT V Y DW+KSI+ +
Sbjct: 176 CHFDSGGPLIC---NGIFQ--GIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIAGNKD 229
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 221 EQRRRVERIYTDFY---DKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
EQ V++I Y D DIALL L + N +V LP G + +
Sbjct: 69 EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSPCY 128
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
I+GWG G L LQ A +P C S + + + + VC G G C
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS---SYWGSTVKNSMVCAG-GDGVRSGC 184
Query: 337 QGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 388
QGDSGGPL C L +G+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 185 QGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 21/176 (11%)
Query: 43 PLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADV 102
P ++ Y +A L + N +V LP G + +
Sbjct: 81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNN--------------SP 126
Query: 103 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 162
I+GWG G L LQ A +P C S + + + + VC G G
Sbjct: 127 CYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS---SYWGSTVKNSMVCAG-GDGVRS 182
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
CQGDSGGPL C L +G+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 183 GCQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 242 DIALLELTRPFKFNEFVSPICLPNPGLTVTADVG--LISGWGRLSEGGSLPHILQAAEVP 299
DIALL L N V LP P + + I+GWG+ S GG L L+ A +P
Sbjct: 93 DIALLRLNTQASLNSAVQLAALP-PSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLP 151
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS-CQGDSGGPLACPLPDGRYYLCGI 358
C S + + + VC G GG +S C GDSGGPL C + +G YY+ G+
Sbjct: 152 SVDHATCSSS---GWWGSTVKTTMVCAG---GGANSGCNGDSGGPLNCQV-NGSYYVHGV 204
Query: 359 TSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 388
TS+ GC V+T VS Y W+ I+
Sbjct: 205 TSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS- 163
I+GWG+ S GG L L+ A +P C S + + + VC G GG +S
Sbjct: 129 ITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSS---GWWGSTVKTTMVCAG---GGANSG 182
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
C GDSGGPL C + +G YY+ G+TS+ GC V+T VS Y W+ I+
Sbjct: 183 CNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 87/201 (43%), Gaps = 37/201 (18%)
Query: 215 ILYARH-----EQRRRVERIYTDF----YDKSIYKN-----------DIALLELTRPFKF 254
IL RH E +V ++ F YD S+ KN D+ LL L+ P +
Sbjct: 49 ILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAEL 108
Query: 255 NEFVSPICLPN--PGLTVTADVGLISGWGRLS-EGGSLPHILQAAEVPLTPKEECRRSYA 311
+ V + LP P L T SGWG + E P LQ ++ + + C + +
Sbjct: 109 TDAVKVMDLPTQEPALGTTC---YASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP 165
Query: 312 VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDF 370
+ + +C G GG +C GDSGGPL C L GITSWG CA P+
Sbjct: 166 -----QKVTKFMLCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGITSWGSEPCALPER 215
Query: 371 YGVYTLVSCYSDWVKSILYAS 391
+YT V Y W+K + A+
Sbjct: 216 PSLYTKVVHYRKWIKDTIVAN 236
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 106 SGWGRLS-EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
SGWG + E P LQ ++ + + C + + + + +C G GG +C
Sbjct: 131 SGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP-----QKVTKFMLCAGRWTGGKSTC 185
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYA 218
GDSGGPL C L GITSWG CA P+ +YT V Y W+K + A
Sbjct: 186 SGDSGGPLVC-----NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVA 235
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 195 RPDFYGVYTLVSCYSDWVKSILYARH--EQRRR------VERIYTDFYDKSIYKNDIALL 246
R DF V T C ++ L A + EQ + V+ I Y+ NDI LL
Sbjct: 36 REDF--VLTAAHCSGSKIQVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLL 93
Query: 247 ELTRPFKFNEFVSPICLPNPGLTVT-ADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEE 305
+L K + V P+ LP + V DV ++GWG+L G LQ E+ + ++
Sbjct: 94 KLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQK 153
Query: 306 CRRSYAVAGYSNYLNQC-QVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG 364
C SY NY ++ ++C G + S +GDSGGPL C + GI S+G
Sbjct: 154 C-ESY----LKNYFDKANEICAGDPKIKRASFRGDSGGPLVC-----KKVAAGIVSYGQN 203
Query: 365 CARPDFYGVYTLVSCYSDWVKSILYAS 391
+T VS + W+K + S
Sbjct: 204 DGSTP--RAFTKVSTFLSWIKKTMKKS 228
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L K + V P+ LP + V + DV ++GWG+L G
Sbjct: 94 KLKSKAKRSSAVKPLNLPRRNVKV--------------KPGDVCYVAGWGKLGPMGKYSD 139
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQC-QVCTGTKQGGLDSCQGDSGGPLACPLPD 178
LQ E+ + ++C SY NY ++ ++C G + S +GDSGGPL C
Sbjct: 140 TLQEVELTVQEDQKC-ESY----LKNYFDKANEICAGDPKIKRASFRGDSGGPLVC---- 190
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S+G +T VS + W+K +
Sbjct: 191 -KKVAAGIVSYGQNDGSTP--RAFTKVSTFLSWIKKTM 225
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P LQ A +P+ + +C++S+ + + C G G+DSC GDSGGPL C
Sbjct: 6 PEKLQQAALPIVSEADCKKSWG-----SKITDVMTCAGAS--GVDSCMGDSGGPLVCQ-K 57
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DG + L GI SWG G GVY+ V+ WV+ IL A+
Sbjct: 58 DGVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPWVQQILEAN 99
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
P LQ A +P+ + +C++S+ + + C G G+DSC GDSGGPL C
Sbjct: 6 PEKLQQAALPIVSEADCKKSWG-----SKITDVMTCAGAS--GVDSCMGDSGGPLVCQ-K 57
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
DG + L GI SWG G GVY+ V+ WV+ IL A
Sbjct: 58 DGVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPWVQQILEA 98
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 235 DKSIYKNDIALLELTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGGS---L 289
D Y +D+ LL L P K + V + LP P L T + SGWG + G
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEA---SGWGSIEPGPDDFEF 58
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +Q ++ L + ++ + + + + +C G GG D+C GDSGGPL C
Sbjct: 59 PDEIQCVQLTLL-----QNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC--- 110
Query: 350 DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
+G + GITSWG C + +YT + Y DW+ +
Sbjct: 111 NGMWQ--GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGADVGLISGWGR 110
S+ + L P K + V + LP P L T + SGWG + G D
Sbjct: 7 SHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEA---SGWGSIEPGPD--------- 54
Query: 111 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
P +Q ++ L + ++ + + + + +C G GG D+C GDSGG
Sbjct: 55 ---DFEFPDEIQCVQLTLL-----QNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGG 106
Query: 171 PLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
PL C +G + GITSWG C + +YT + Y DW+ +
Sbjct: 107 PLIC---NGMWQ--GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P LQ A +P+ + +C++S+ + + C G G+DSC GDSGGPL C
Sbjct: 6 PEKLQQAALPIVSEADCKKSWG-----SKITDVMTCAGAS--GVDSCMGDSGGPLVCQ-K 57
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DG + L GI SWG G VY+ V+ WV+ IL A+
Sbjct: 58 DGVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPWVQQILEAN 99
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
P LQ A +P+ + +C++S+ + + C G G+DSC GDSGGPL C
Sbjct: 6 PEKLQQAALPIVSEADCKKSWG-----SKITDVMTCAGAS--GVDSCMGDSGGPLVCQ-K 57
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
DG + L GI SWG G VY+ V+ WV+ IL A
Sbjct: 58 DGVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPWVQQILEA 98
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 8/196 (4%)
Query: 194 ARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFK 253
AR F + ++ Y W+ ++ ++R+ + + LL+L R
Sbjct: 37 ARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVT 96
Query: 254 FNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAV 312
N+ V+ ICLP V I+GWG ++G +L A + + +EC
Sbjct: 97 LNQRVALICLPPEWYVVPPGTKCEIAGWGE-TKGTGNDTVLNVALLNVISNQECN----- 150
Query: 313 AGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYG 372
+ + + ++CT + +C+GD GGPLAC + L GI CAR +
Sbjct: 151 IKHRGRVRESEMCTEGLLAPVGACEGDYGGPLAC-FTHNSWVLEGIIIPNRVCARSRWPA 209
Query: 373 VYTLVSCYSDWVKSIL 388
V+T VS + DW+ ++
Sbjct: 210 VFTRVSVFVDWIHKVM 225
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R N+ V+ ICLP W + G I+GWG ++G
Sbjct: 90 KLERSVTLNQRVALICLP-------------PEWYVVPPGTKCE-IAGWGE-TKGTGNDT 134
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L A + + +EC + + + ++CT + +C+GD GGPLAC
Sbjct: 135 VLNVALLNVISNQECN-----IKHRGRVRESEMCTEGLLAPVGACEGDYGGPLAC-FTHN 188
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ L GI CAR + V+T VS + DW+ ++
Sbjct: 189 SWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 182 YLCGIT----SWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVER-IYTDFYDK 236
+ CG T W V A D + +S K +L + R E+ I + +
Sbjct: 24 FFCGGTLINPEWVVTAAHCDSTNFQMQLGVHS---KKVLNEDEQTRNPKEKFICPNKNNN 80
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSE-GGSLPHILQA 295
+ DI L++L +P ++ ++P+ LP+ +V V I GWG ++ + P +
Sbjct: 81 EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSV-GSVCRIMGWGSITPVKETFPDVPYC 139
Query: 296 AEVPLTPKEECRRSYAVAGYSNYLNQCQ-VCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
A + L C+ AGY L + + +C G QGG D+C GDSGGPL C +G++
Sbjct: 140 ANINLLDHAVCQ-----AGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLIC---NGQFQ 191
Query: 355 LCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYASVSA 394
GI S+G C + G+YT V Y+DW++ + + A
Sbjct: 192 --GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDA 230
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 105 ISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ-VCTGTKQGGLD 162
I GWG ++ + P + A + L C+ AGY L + + +C G QGG D
Sbjct: 120 IMGWGSITPVKETFPDVPYCANINLLDHAVCQ-----AGYPELLAEYRTLCAGIVQGGKD 174
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVK 213
+C GDSGGPL C +G++ GI S+G C + G+YT V Y+DW++
Sbjct: 175 TCGGDSGGPLIC---NGQFQ--GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQ 221
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 90/204 (44%), Gaps = 23/204 (11%)
Query: 194 ARPDFYGVYTLVSCYSDWVKSILYARH--EQRRRVERIYTD------FYDKSIYKNDIAL 245
R DF V T C + L A + EQ R + I Y+ + NDI L
Sbjct: 34 VRKDF--VLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIML 91
Query: 246 LELTRPFKFNEFVSPICLPNPGLTVT-ADVGLISGWGRLSEGGSLPHILQAAEVPLTPKE 304
L+L R K+ V P+ LP+ V + ++GWG +S +L LQ EV LT ++
Sbjct: 92 LQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMS-TLATTLQ--EVLLTVQK 148
Query: 305 ECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG 364
+C+ G NY ++C G + +GDSGGPL C + GI S+G
Sbjct: 149 DCQCERLFHG--NYSRATEICVGDPKKTQTGFKGDSGGPLVC-----KDVAQGILSYGNK 201
Query: 365 CARPDFYGVYTLVSCYSDWVKSIL 388
P GVY VS + W+K +
Sbjct: 202 KGTPP--GVYIKVSHFLPWIKRTM 223
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R K+ V P+ LP+ V G+L ++GWG +S +L
Sbjct: 93 QLERKAKWTTAVRPLRLPSSKAQVKP--------GQLCS------VAGWGYVSMS-TLAT 137
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ EV LT +++C+ G NY ++C G + +GDSGGPL C
Sbjct: 138 TLQ--EVLLTVQKDCQCERLFHG--NYSRATEICVGDPKKTQTGFKGDSGGPLVC----- 188
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S+G P GVY VS + W+K +
Sbjct: 189 KDVAQGILSYGNKKGTPP--GVYIKVSHFLPWIKRTM 223
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 182 YLCGIT----SWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVER-IYTDFYDK 236
+ CG T W V A D + +S K +L + R E+ I + +
Sbjct: 24 FFCGGTLINPEWVVTAAHCDSTDFQMQLGVHS---KKVLNEDEQTRNPKEKFICPNKNNN 80
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSE-GGSLPHILQA 295
+ DI L++L +P ++ ++P+ LP+ +V V I GWG ++ + P +
Sbjct: 81 EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSV-GSVCRIMGWGSITPVKETFPDVPYC 139
Query: 296 AEVPLTPKEECRRSYAVAGYSNYLNQCQ-VCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
A + L C+ AGY L + + +C G QGG D+C GDSGGPL C +G++
Sbjct: 140 ANINLLDHAVCQ-----AGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLIC---NGQFQ 191
Query: 355 LCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYASVSA 394
GI S+G C + G+YT V Y+DW++ + + A
Sbjct: 192 --GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDA 230
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 105 ISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ-VCTGTKQGGLD 162
I GWG ++ + P + A + L C+ AGY L + + +C G QGG D
Sbjct: 120 IMGWGSITPVKETFPDVPYCANINLLDHAVCQ-----AGYPELLAEYRTLCAGIVQGGKD 174
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVK 213
+C GDSGGPL C +G++ GI S+G C + G+YT V Y+DW++
Sbjct: 175 TCGGDSGGPLIC---NGQFQ--GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQ 221
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT-ADVGLISGWGRLSEGGSLPHI 292
Y+ NDI LL+L R K V P+ LP V D ++GWG+++ G P
Sbjct: 81 YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKT 140
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
L ++ + + C + S+Y ++C G + S +GDSGGPL C +
Sbjct: 141 LHEVKLTVQKDQVCESQFQ----SSYNRANEICVGDSKIKGASFRGDSGGPLVC-----K 191
Query: 353 YYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
GI S+G + P V+T V + W+K +
Sbjct: 192 RAAAGIVSYGQTDGSAPQ---VFTRVLSFVSWIKKTM 225
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 27/166 (16%)
Query: 52 RSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRL 111
RS + +L R K V P+ LP V + D ++GWG++
Sbjct: 86 RSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHV--------------KPGDECYVAGWGKV 131
Query: 112 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+ G P L ++ + + C + S+Y ++C G + S +GDSGGP
Sbjct: 132 TPDGEFPKTLHEVKLTVQKDQVCESQFQ----SSYNRANEICVGDSKIKGASFRGDSGGP 187
Query: 172 LACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L C + GI S+G + P V+T V + W+K +
Sbjct: 188 LVC-----KRAAAGIVSYGQTDGSAPQ---VFTRVLSFVSWIKKTM 225
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-----LISGWGRLSEGGS 288
Y +D+ LL+L+ V P+ P V DV ++GWG ++ G
Sbjct: 81 YQPDTIDHDLLLLQLSEKATLGPAVRPL----PWQRVDRDVAPGTLCDVAGWGIVNHAGR 136
Query: 289 LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPL 348
P LQ +P+ + C R + + + +C + + DSC+GDSGGPL C
Sbjct: 137 RPDSLQHVLLPVLDRATCNRR---THHDGAITERLMCAESNR--RDSCKGDSGGPLVCG- 190
Query: 349 PDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
L G+ SWG C G+YT V+ Y+ W+ S+L
Sbjct: 191 ----GVLEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG ++ G P LQ +P+ + C R + + + +C + + DSC
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRR---THHDGAITERLMCAESNR--RDSC 179
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
+GDSGGPL C L G+ SWG C G+YT V+ Y+ W+ S+L
Sbjct: 180 KGDSGGPLVCG-----GVLEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL---DSCQGDSGGPLAC 174
P +LQ +PL + C+ S + N C G K G D+C+GDSGGP
Sbjct: 7 PSVLQVVNLPLVERPVCKASTRIRITDNMF-----CAGYKPGEGKRGDACEGDSGGPFVM 61
Query: 175 PLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 62 KSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 104
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL---DSCQGDSGGPLAC 346
P +LQ +PL + C+ S + N C G K G D+C+GDSGGP
Sbjct: 7 PSVLQVVNLPLVERPVCKASTRIRITDNMF-----CAGYKPGEGKRGDACEGDSGGPFVM 61
Query: 347 PLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 62 KSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 104
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 23/204 (11%)
Query: 194 ARPDFYGVYTLVSCYSDWVKSILYARH--EQRRRVERIYTD------FYDKSIYKNDIAL 245
R DF V T C + L A + EQ R + I Y+ + N+I L
Sbjct: 34 VRKDF--VLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIML 91
Query: 246 LELTRPFKFNEFVSPICLPNPGLTVT-ADVGLISGWGRLSEGGSLPHILQAAEVPLTPKE 304
L+L R K+ V P+ LP+ V + ++GWG +S +L LQ EV LT ++
Sbjct: 92 LQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMS-TLATTLQ--EVLLTVQK 148
Query: 305 ECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG 364
+C+ G NY ++C G + +GDSGGPL C + GI S+G
Sbjct: 149 DCQCERLFHG--NYSRATEICVGDPKKTQTGFKGDSGGPLVC-----KDVAQGILSYGNK 201
Query: 365 CARPDFYGVYTLVSCYSDWVKSIL 388
P GVY VS + W+K +
Sbjct: 202 KGTPP--GVYIKVSHFLPWIKRTM 223
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R K+ V P+ LP+ V G+L ++GWG +S +L
Sbjct: 93 QLERKAKWTTAVRPLRLPSSKAQVKP--------GQLCS------VAGWGYVSMS-TLAT 137
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ EV LT +++C+ G NY ++C G + +GDSGGPL C
Sbjct: 138 TLQ--EVLLTVQKDCQCERLFHG--NYSRATEICVGDPKKTQTGFKGDSGGPLVC----- 188
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S+G P GVY VS + W+K +
Sbjct: 189 KDVAQGILSYGNKKGTPP--GVYIKVSHFLPWIKRTM 223
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 209 SDWVKSILYARHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGL 268
S V++ L RH + Y++ + ND+ L++L ++ + I + +
Sbjct: 64 SQMVEASLSVRHPE-----------YNRPLLANDLMLIKLDESVSESDTIRSISIASQCP 112
Query: 269 TVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
T + L+SGWG L+ G +P +LQ V + +E C + Y + + C G
Sbjct: 113 T-AGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMF-----CAGG 165
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSI 387
Q DSC GDSGGPL C YL G+ S+G C + GVYT + +++W++
Sbjct: 166 GQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220
Query: 388 LYA 390
+ A
Sbjct: 221 VQA 223
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 35 HILQAAEVPLTPKEECRRSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWG 94
H L+A + P + E S +V E RP N+ + + + ++ + + IS
Sbjct: 54 HSLEADQEPGSQMVE--ASLSVRHPEYNRPLLANDLM--LIKLDESVSESDTIRSISIAS 109
Query: 95 RLSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCT 154
+ + L+SGWG L+ G +P +LQ V + +E C + Y + + C
Sbjct: 110 QCPTAGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMF-----CA 163
Query: 155 GTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVK 213
G Q DSC GDSGGPL C YL G+ S+G C + GVYT + +++W++
Sbjct: 164 GGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIE 218
Query: 214 SILYA 218
+ A
Sbjct: 219 KTVQA 223
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 242 DIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPLT 301
DI L+ L RP ++ ++P+ LP+ V + ++ GWG++S + P + + +
Sbjct: 88 DIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIM-GWGKISTT-TYPDVPHCTNIFIV 145
Query: 302 PKEECRRSYA-VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITS 360
+ C Y V S L C G +GG D+C GDSGGPL C +G + GI +
Sbjct: 146 KHKWCEPLYPWVPADSRTL-----CAGILKGGRDTCHGDSGGPLIC---NGEMH--GIVA 195
Query: 361 WGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
G C + VYT V Y++W++SI+
Sbjct: 196 GGSEPCGQHLKPAVYTKVFDYNNWIQSII 224
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP ++ ++P+ LP+ V + ++ GWG++S + P
Sbjct: 93 RLRRPVTYSTHIAPVSLPSRSRGVGSRCRIM----------------GWGKISTT-TYPD 135
Query: 120 ILQAAEVPLTPKEECRRSYA-VAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
+ + + + C Y V S L C G +GG D+C GDSGGPL C +
Sbjct: 136 VPHCTNIFIVKHKWCEPLYPWVPADSRTL-----CAGILKGGRDTCHGDSGGPLIC---N 187
Query: 179 GRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
G + GI + G C + VYT V Y++W++SI+
Sbjct: 188 GEMH--GIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 94/229 (41%), Gaps = 30/229 (13%)
Query: 177 PDGRYYLCGITSW--------GVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRR--- 225
P R Y+ + W G R DF V T C+ + L A + + +
Sbjct: 9 PHSRPYMAYLMIWDQKSLKRCGGFLIRDDF--VLTAAHCWGSSINVTLGAHNIKEQEPTQ 66
Query: 226 ----VER-IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISG 279
V+R I Y+ + NDI LL+L R K V P+ LP N ++G
Sbjct: 67 QFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAG 126
Query: 280 WGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
WG+ + G H LQ EV +T +E+ + + Y Y + ++C G + S +GD
Sbjct: 127 WGQTAPLGKHSHTLQ--EVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSFKGD 182
Query: 340 SGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
SGGPL C GI S+G P T VS + W+K +
Sbjct: 183 SGGPLVC-----NKVAQGIVSYGRNNGMPP--RACTKVSSFVHWIKKTM 224
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG+ + G H LQ EV +T +E+ + + Y Y + ++C G + S
Sbjct: 124 VAGWGQTAPLGKHSHTLQ--EVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSF 179
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+GDSGGPL C GI S+G P T VS + W+K +
Sbjct: 180 KGDSGGPLVC-----NKVAQGIVSYGRNNGMPP--RACTKVSSFVHWIKKTM 224
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT-ADVGLISGWGRLSEGGSLPHI 292
Y+ NDI LL+L R K V P+ LP V D ++GWG+++ G P
Sbjct: 81 YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKT 140
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
L ++ + + C + S+Y ++C G + S + DSGGPL C +
Sbjct: 141 LHEVKLTVQKDQVCESQFQ----SSYNRANEICVGDSKIKGASFEEDSGGPLVC-----K 191
Query: 353 YYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
GI S+G + P V+T V + W+K +
Sbjct: 192 RAAAGIVSYGQTDGSAPQ---VFTRVLSFVSWIKKTM 225
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 27/166 (16%)
Query: 52 RSYAVAGYELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRL 111
RS + +L R K V P+ LP V + D ++GWG++
Sbjct: 86 RSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHV--------------KPGDECYVAGWGKV 131
Query: 112 SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGP 171
+ G P L ++ + + C + S+Y ++C G + S + DSGGP
Sbjct: 132 TPDGEFPKTLHEVKLTVQKDQVCESQFQ----SSYNRANEICVGDSKIKGASFEEDSGGP 187
Query: 172 LACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L C + GI S+G + P V+T V + W+K +
Sbjct: 188 LVC-----KRAAAGIVSYGQTDGSAPQ---VFTRVLSFVSWIKKTM 225
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 221 EQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LISG 279
+Q V +++ + YD NDI L++L+ P + V+ + LP V L G
Sbjct: 70 QQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMG 129
Query: 280 WGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
WGR+ +LQ V + + + +CT + C GD
Sbjct: 130 WGRVGAHDPPAQVLQELNVTVV--------------TFFCRPHNICTFVPRRKAGICFGD 175
Query: 340 SGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
SGGPL C DG + GI S+ + GCA F +T V+ Y DW++S L
Sbjct: 176 SGGPLIC---DG--IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 104 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
L GWGR+ +LQ V + + + +CT +
Sbjct: 126 LAMGWGRVGAHDPPAQVLQELNVTVV--------------TFFCRPHNICTFVPRRKAGI 171
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 216
C GDSGGPL C DG + GI S+ + GCA F +T V+ Y DW++S L
Sbjct: 172 CFGDSGGPLIC---DG--IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHI 292
Y+ + NDI LL+L R K V P+ LP N ++GWG+ + G H
Sbjct: 80 YNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHT 139
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ EV +T +E+ + + Y Y + ++C G + S +GDSGGPL C
Sbjct: 140 LQ--EVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSFKGDSGGPLVC-----N 190
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GI S+G P T VS + W+K +
Sbjct: 191 KVAQGIVSYGRNNGMPP--RACTKVSSFVHWIKKTM 224
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG+ + G H LQ EV +T +E+ + + Y Y + ++C G + S
Sbjct: 124 VAGWGQTAPLGKHSHTLQ--EVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSF 179
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+GDSGGPL C GI S+G P T VS + W+K +
Sbjct: 180 KGDSGGPLVC-----NKVAQGIVSYGRNNGMPP--RACTKVSSFVHWIKKTM 224
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 208 YSDWVKSILYARHEQRRRVERIYTDF-----YDKSIYKNDIALLELTRPFKFNEFVSPIC 262
+ D V R ++ +V TDF Y+ + NDIA++ L P ++ +
Sbjct: 48 FVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVG 107
Query: 263 LPNPGLTVTADVGLISGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQ 321
LP+ + V V +GWG S+ + +L+ +VP+ +C Y + N
Sbjct: 108 LPSTDVGV-GTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGN---- 162
Query: 322 CQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWG--VGC--ARPDFYGVYTLV 377
+C + GG +C GDSGGPL +G Y GITS+G GC PD +T V
Sbjct: 163 --ICIDST-GGKGTCNGDSGGPLNY---NGLTY--GITSFGAAAGCEAGYPD---AFTRV 211
Query: 378 SCYSDWVKS 386
+ + DW+++
Sbjct: 212 TYFLDWIQT 220
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 47/235 (20%)
Query: 8 VEGNPRQLHHQLFIILLRRTSEGGSLPH---ILQAA---------EVPL---TPKEECRR 52
VE P HQ + + GGSL IL AA +V L +E+
Sbjct: 5 VEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIREDEAT 64
Query: 53 SYAVAGYELTRPFKFNEFV-----SPICLPNPGLTVTADVGLISGWGRLSEGADVGLI-- 105
+ + T +N FV + I LP P +T+TA + + G S VG +
Sbjct: 65 QVTIQSTDFTVHENYNSFVISNDIAVIRLPVP-VTLTAAIATV---GLPSTDVGVGTVVT 120
Query: 106 -SGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
+GWG S+ + +L+ +VP+ +C Y + N +C + GG +
Sbjct: 121 PTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGN------ICIDST-GGKGT 173
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWG--VGC--ARPDFYGVYTLVSCYSDWVKS 214
C GDSGGPL +G Y GITS+G GC PD +T V+ + DW+++
Sbjct: 174 CNGDSGGPLNY---NGLTY--GITSFGAAAGCEAGYPD---AFTRVTYFLDWIQT 220
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-----LISGWGRLSEGGSLPHILQA 295
+D+ LL+L+ V P+ P V DV ++GWG +S G P LQ
Sbjct: 88 HDLLLLQLSEKATLGPAVRPL----PWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQH 143
Query: 296 AEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
+P+ + C RR++ + + Q +C + + DSC+GDSGGPL C G
Sbjct: 144 VLLPVLDRATCNRRTH----HDGAITQRMMCAESNR--RDSCKGDSGGPLVC----GGVL 193
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+TS C G+YT V+ Y+ W+ S+L
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 93 WGRLSEGADVGL---ISGWGRLSEGGSLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLN 148
W R+ + G ++GWG +S G P LQ +P+ + C RR++ + +
Sbjct: 110 WQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTH----HDGAIT 165
Query: 149 QCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCY 208
Q +C + + DSC+GDSGGPL C G +TS C G+YT V+ Y
Sbjct: 166 QRMMCAESNR--RDSCKGDSGGPLVC----GGVLEGVVTSGSRVCGNRKKPGIYTRVASY 219
Query: 209 SDWVKSIL 216
+ W+ S+L
Sbjct: 220 AAWIDSVL 227
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
P +LQ +P+ + C+ S + N K+G D+C+GDSGGP P
Sbjct: 3 PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSP 60
Query: 178 -DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 61 FNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 100
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +LQ +P+ + C+ S + N K+G D+C+GDSGGP P
Sbjct: 3 PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSP 60
Query: 350 -DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 61 FNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 100
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
P +LQ +P+ + C+ S + N K+G D+C+GDSGGP P
Sbjct: 3 PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSP 60
Query: 178 -DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 61 FNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 100
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P +LQ +P+ + C+ S + N K+G D+C+GDSGGP P
Sbjct: 3 PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSP 60
Query: 350 -DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 61 FNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 100
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-----LISGWGRLSEGGSLPHILQA 295
+D+ LL+L+ V P+ P V DV ++GWG ++ G P LQ
Sbjct: 88 HDLLLLQLSEKATLGPAVRPL----PWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQH 143
Query: 296 AEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
+P+ + C RR++ + + + +C + + DSC+GDSGGPL C G
Sbjct: 144 VLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDSCKGDSGGPLVC----GGVL 193
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+TS C G+YT V+ Y+ W+ S+L
Sbjct: 194 EGVVTSGSAVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG ++ G P LQ +P+ + C RR++ + + + +C + + DS
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDS 178
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
C+GDSGGPL C G +TS C G+YT V+ Y+ W+ S+L
Sbjct: 179 CKGDSGGPLVC----GGVLEGVVTSGSAVCGNRKKPGIYTRVASYAAWIDSVL 227
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
P LQ A +PL C++ + + +C G G+ SC GDSGGPL C
Sbjct: 3 PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMGDSGGPLVCK-K 54
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+G + L GI SWG GVY V+ +WV+ L A
Sbjct: 55 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 96
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P LQ A +PL C++ + + +C G G+ SC GDSGGPL C
Sbjct: 3 PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGAS--GVSSCMGDSGGPLVCK-K 54
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+G + L GI SWG GVY V+ +WV+ L A+
Sbjct: 55 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 96
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
P LQ A +PL C++ + + +C G G+ SC GDSGGPL C
Sbjct: 4 PDRLQQASLPLLSNTNCKKYWGT-----KIKDAMICAGAS--GVSSCMGDSGGPLVCK-K 55
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+G + L GI SWG GVY V+ +WV+ L A
Sbjct: 56 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 97
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
P LQ A +PL C++ + + +C G G+ SC GDSGGPL C
Sbjct: 4 PDRLQQASLPLLSNTNCKKYWGT-----KIKDAMICAGAS--GVSSCMGDSGGPLVCK-K 55
Query: 350 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+G + L GI SWG GVY V+ +WV+ L A+
Sbjct: 56 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 97
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-----ISGWGRLSEGGSLPHILQA 295
+D+ LL+L+ V P+ P V DV ++GWG ++ G P LQ
Sbjct: 95 HDLLLLQLSEKATLGPAVRPL----PWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQH 150
Query: 296 AEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
+P+ + C RR++ + + + +C + + DSC+GDSGGPL C G
Sbjct: 151 VLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDSCKGDSGGPLVC----GGVL 200
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+TS C G+YT V+ Y+ W+ S+L
Sbjct: 201 EGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 234
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG ++ G P LQ +P+ + C RR++ + + + +C + + DS
Sbjct: 132 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDS 185
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
C+GDSGGPL C G +TS C G+YT V+ Y+ W+ S+L
Sbjct: 186 CKGDSGGPLVC----GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 234
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-----LISGWGRLSEGGSLPHILQA 295
+D+ LL+L+ V P+ P V DV ++GWG ++ G P LQ
Sbjct: 88 HDLLLLQLSEKATLGPAVRPL----PWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQH 143
Query: 296 AEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
+P+ + C RR++ + + + +C + + DSC+GDSGGPL C G
Sbjct: 144 VLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDSCKGDSGGPLVC----GGVL 193
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+TS C G+YT V+ Y+ W+ S+L
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG ++ G P LQ +P+ + C RR++ + + + +C + + DS
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDS 178
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
C+GDSGGPL C G +TS C G+YT V+ Y+ W+ S+L
Sbjct: 179 CKGDSGGPLVC----GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 218 ARHEQRRRV---ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
+R E R+V +RI+ D YD NDI +L+L N V LP G + V
Sbjct: 61 SRREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV 120
Query: 275 G-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
L GWG L + +LQ V + CRRS N C + G + G
Sbjct: 121 QCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRGRQAG-- 167
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
C GDSG PL C +G + GI S+ GCA + + V+ + +W+ SI+
Sbjct: 168 -VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 44 LTPKEECRRSYAVA-----GYELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGR 95
L+ +E R+ +AV GY+ N+ V I N T+ A+V L + R
Sbjct: 60 LSRREPTRQVFAVQRIFEDGYDPVN--LLNDIV--ILQLNGSATINANVQVAQLPAQGRR 115
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 155
L G L GWG L + +LQ V + CRRS N C + G
Sbjct: 116 LGNGVQC-LAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRG 163
Query: 156 TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKS 214
+ G C GDSG PL C +G + GI S+ GCA + + V+ + +W+ S
Sbjct: 164 RQAG---VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215
Query: 215 IL 216
I+
Sbjct: 216 II 217
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGSLPHILQAAEV 298
+ND+ALL+L K + + P+ LP+ V A ++GWG +GG L +L+ ++
Sbjct: 84 ENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDL 143
Query: 299 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGI 358
+ C S ++ L+ VC C+GDSGGPL C GR L G+
Sbjct: 144 QVLDTRMCNNSRF---WNGSLSPSMVCLAADSKDQAPCKGDSGGPLVC--GKGR-VLAGV 197
Query: 359 TSWGVGCARPDFY-GVYTLVSCYSDWVKSI 387
S+ F V T V+ Y W++ +
Sbjct: 198 LSFSSRVCTDIFKPPVATAVAPYVSWIRKV 227
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG +GG L +L+ ++ + C S ++ L+ VC C
Sbjct: 122 MAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRF---WNGSLSPSMVCLAADSKDQAPC 178
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFY-GVYTLVSCYSDWVKSI 215
+GDSGGPL C GR L G+ S+ F V T V+ Y W++ +
Sbjct: 179 KGDSGGPLVC--GKGR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKV 227
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 218 ARHEQRRRV---ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
+R E R+V +RI+ D YD NDI +L+L N V LP G + V
Sbjct: 61 SRREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV 120
Query: 275 G-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
L GWG L + +LQ V + CRRS N C + G + G
Sbjct: 121 QCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRGRQAG-- 167
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
C GDSG PL C +G + GI S+ GCA + + V+ + +W+ SI+
Sbjct: 168 -VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 44 LTPKEECRRSYAVA-----GYELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGR 95
L+ +E R+ +AV GY+ N+ V I N T+ A+V L + R
Sbjct: 60 LSRREPTRQVFAVQRIFEDGYDPVN--LLNDIV--ILQLNGSATINANVQVAQLPAQGRR 115
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 155
L G L GWG L + +LQ V + CRRS N C + G
Sbjct: 116 LGNGVQC-LAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRG 163
Query: 156 TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKS 214
+ G C GDSG PL C +G + GI S+ GCA + + V+ + +W+ S
Sbjct: 164 RQAG---VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215
Query: 215 IL 216
I+
Sbjct: 216 II 217
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-----LISGWGRLSEGGSLPHILQA 295
+D+ LL+L+ V P+ P V DV ++GWG ++ G P LQ
Sbjct: 88 HDLLLLQLSEKATLGPAVRPL----PWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQH 143
Query: 296 AEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYY 354
+P+ + C RR++ + + + +C + + DSC+GD+GGPL C G
Sbjct: 144 VLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDSCKGDAGGPLVC----GGVL 193
Query: 355 LCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+TS C G+YT V+ Y+ W+ S+L
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEEC-RRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG ++ G P LQ +P+ + C RR++ + + + +C + + DS
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH----HDGAITERLMCAESNR--RDS 178
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
C+GD+GGPL C G +TS C G+YT V+ Y+ W+ S+L
Sbjct: 179 CKGDAGGPLVC----GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 241 NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGSLP-HILQAAEVP 299
NDI L++L K N+ V + + + + ++GWG P L+ V
Sbjct: 91 NDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVT 150
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
+ ++ C G ++ + VC G +G DSC+GD+GGPL C G ++ I
Sbjct: 151 VLSRKLCNSQSYYNG-DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC---KGVFH--AIV 204
Query: 360 SWGVGCARPDFYGVYTLVS-CYSDWVKSIL 388
S G C G+YTL++ Y W+KS L
Sbjct: 205 SGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 105 ISGWGRLSEGGSLP-HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 163
++GWG P L+ V + ++ C G ++ + VC G +G DS
Sbjct: 127 VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG-DPFITKDMVCAGDAKGQKDS 185
Query: 164 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVS-CYSDWVKSILYARH 220
C+GD+GGPL C G ++ I S G C G+YTL++ Y W+KS L H
Sbjct: 186 CKGDAGGPLIC---KGVFH--AIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPH 238
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 218 ARHEQRRRV---ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
+R E R+V +RI+ + YD NDI +L+L N V LP G + V
Sbjct: 61 SRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV 120
Query: 275 G-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
L GWG L + +LQ V + CRRS N C + G + G
Sbjct: 121 QCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRGRQAG-- 167
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
C GDSG PL C +G + GI S+ GCA + + V+ + +W+ SI+
Sbjct: 168 -VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 44 LTPKEECRRSYAVA-----GYELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGR 95
L+ +E R+ +AV GY+ N+ V I N T+ A+V L + R
Sbjct: 60 LSRREPTRQVFAVQRIFENGYDPVN--LLNDIV--ILQLNGSATINANVQVAQLPAQGRR 115
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 155
L G L GWG L + +LQ V + CRRS N C + G
Sbjct: 116 LGNGVQC-LAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRG 163
Query: 156 TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKS 214
+ G C GDSG PL C +G + GI S+ GCA + + V+ + +W+ S
Sbjct: 164 RQAG---VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215
Query: 215 IL 216
I+
Sbjct: 216 II 217
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 218 ARHEQRRRV---ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
+R E R+V +RI+ + YD NDI +L+L N V LP G + V
Sbjct: 61 SRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV 120
Query: 275 G-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
L GWG L + +LQ V + CRRS N C + G + G
Sbjct: 121 QCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRGRQAG-- 167
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
C GDSG PL C +G + GI S+ GCA + + V+ + +W+ SI+
Sbjct: 168 -VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 44 LTPKEECRRSYAVA-----GYELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGR 95
L+ +E R+ +AV GY+ N+ V I N T+ A+V L + R
Sbjct: 60 LSRREPTRQVFAVQRIFENGYDPVN--LLNDIV--ILQLNGSATINANVQVAQLPAQGRR 115
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 155
L G L GWG L + +LQ V + CRRS N C + G
Sbjct: 116 LGNGVQC-LAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRG 163
Query: 156 TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKS 214
+ G C GDSG PL C +G + GI S+ GCA + + V+ + +W+ S
Sbjct: 164 RQAG---VCFGDSGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215
Query: 215 IL 216
I+
Sbjct: 216 II 217
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 221 EQRRRVER-IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT-ADVGLIS 278
+Q+ +VE+ I + Y+ +DI LL+L + + V+ + LP+P + + +
Sbjct: 67 QQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAA 126
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG+ + L+ E+ + ++ C Y Y + QVC G+ + G
Sbjct: 127 GWGKTGVRDPTSYTLREVELRIMDEKAC------VDYRYYEYKFQVCVGSPTTLRAAFMG 180
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGPL C G + GI S+G A+P ++T VS Y W+ +++
Sbjct: 181 DSGGPLLCA---GVAH--GIVSYGHPDAKPP--AIFTRVSTYVPWINAVI 223
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 106 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 165
+GWG+ + L+ E+ + ++ C Y Y + QVC G+ +
Sbjct: 126 AGWGKTGVRDPTSYTLREVELRIMDEKAC------VDYRYYEYKFQVCVGSPTTLRAAFM 179
Query: 166 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GDSGGPL C G + GI S+G A+P ++T VS Y W+ +++
Sbjct: 180 GDSGGPLLCA---GVAH--GIVSYGHPDAKPP--AIFTRVSTYVPWINAVI 223
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-ISGWGRLSEGGSLPHILQAAEV 298
+N++ALL+L K + + P+ LP+ V A ++GWG +GG L +L+ ++
Sbjct: 84 ENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDL 143
Query: 299 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGI 358
+ C S ++ L+ VC C+GDSGGPL C GR L G+
Sbjct: 144 QVLDTRMCNNSRF---WNGSLSPSMVCLAADSKDQAPCKGDSGGPLVC--GKGR-VLAGV 197
Query: 359 TSWGVGCARPDFY-GVYTLVSCYSDWVKSI 387
S+ F V T V+ Y W++ +
Sbjct: 198 LSFSSRVCTDIFKPPVATAVAPYVSWIRKV 227
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWG +GG L +L+ ++ + C S ++ L+ VC C
Sbjct: 122 MAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRF---WNGSLSPSMVCLAADSKDQAPC 178
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFY-GVYTLVSCYSDWVKSI 215
+GDSGGPL C GR L G+ S+ F V T V+ Y W++ +
Sbjct: 179 KGDSGGPLVC--GKGR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKV 227
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 88/211 (41%), Gaps = 36/211 (17%)
Query: 201 VYTLVSCYSD----WVKSILYARHEQRRRVERIYTDF----YDKSIYK-----------N 241
V T C SD W+ ++ E + ++ F +D S+ K +
Sbjct: 36 VLTAAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISH 95
Query: 242 DIALLELTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGGSL-PHILQAAEV 298
D+ LL L +P + + V + LP P L T SGWG +S + LQ E+
Sbjct: 96 DLMLLRLAQPARITDAVKILDLPTQEPKLGSTC---YTSGWGLISTFTNRGSGTLQCVEL 152
Query: 299 PLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGI 358
L E+C R+Y + + +C + C GDSGG L C DG + GI
Sbjct: 153 RLQSNEKCARAYP-----EKMTEFVLCATHRDDSGSICLGDSGGALIC---DGVFQ--GI 202
Query: 359 TSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
TSWG CA + V+T V + W+K +
Sbjct: 203 TSWGYSECADFNDNFVFTKVMPHKKWIKETI 233
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLPN--PGLTVTADVGLISGWGRLSEGADVGLISGWGR 110
S+ + L +P + + V + LP P L T SGWG +S + G SG
Sbjct: 94 SHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTC---YTSGWGLISTFTNRG--SG--- 145
Query: 111 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGG 170
LQ E+ L E+C R+Y + + +C + C GDSGG
Sbjct: 146 ---------TLQCVELRLQSNEKCARAYP-----EKMTEFVLCATHRDDSGSICLGDSGG 191
Query: 171 PLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
L C DG + GITSWG CA + V+T V + W+K +
Sbjct: 192 ALIC---DGVFQ--GITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 15/186 (8%)
Query: 213 KSILYARHEQRRRVER-IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT 271
K +L + R E+ I + + + DI L++L +E + P+ LP+ +V
Sbjct: 56 KKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV- 114
Query: 272 ADVGLISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ-VCTGTK 329
V I GWG ++ + P + A + L C+ AGY L + + +C G
Sbjct: 115 GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQ-----AGYPELLTEYRTLCAGIL 169
Query: 330 QGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
+GG D+C GDSGGPL C +G++ GI S+G C + GVYT V Y+ W++SI+
Sbjct: 170 EGGKDTCGGDSGGPLIC---NGQFQ--GIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
Query: 389 YASVSA 394
+ +
Sbjct: 225 AGNTTV 230
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 105 ISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ-VCTGTKQGGLD 162
I GWG ++ + P + A + L C+ AGY L + + +C G +GG D
Sbjct: 120 IMGWGSITPIKVTYPDVPYCAYINLLDDAVCQ-----AGYPELLTEYRTLCAGILEGGKD 174
Query: 163 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
+C GDSGGPL C +G++ GI S+G C + GVYT V Y+ W++SI+
Sbjct: 175 TCGGDSGGPLIC---NGQFQ--GIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 218 ARHEQRRRV---ERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
+R E R+V +RI+ + YD NDI +L+L N V LP G + V
Sbjct: 61 SRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV 120
Query: 275 G-LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
L GWG L + +LQ V + CRRS N C + G + G
Sbjct: 121 QCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRGRQAG-- 167
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
C GD G PL C +G + GI S+ GCA + + V+ + +W+ SI+
Sbjct: 168 -VCFGDXGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 44 LTPKEECRRSYAVA-----GYELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGR 95
L+ +E R+ +AV GY+ N+ V I N T+ A+V L + R
Sbjct: 60 LSRREPTRQVFAVQRIFENGYDPVN--LLNDIV--ILQLNGSATINANVQVAQLPAQGRR 115
Query: 96 LSEGADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTG 155
L G L GWG L + +LQ V + CRRS N C + G
Sbjct: 116 LGNGVQC-LAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----------NVCTLVRG 163
Query: 156 TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKS 214
+ G C GD G PL C +G + GI S+ GCA + + V+ + +W+ S
Sbjct: 164 RQAG---VCFGDXGSPLVC---NGLIH--GIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215
Query: 215 IL 216
I+
Sbjct: 216 II 217
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPN-PGLTVTADVGLISGWGRLSEGGSLPHI 292
Y+ S +DI LL+L V + P+ + ++GWGR
Sbjct: 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAGWGRTGVLKPGSDT 140
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ ++ L + C + + ++ + Q+C G + + +GDSGGPL C
Sbjct: 141 LQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ- 193
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GI S+G A+P V+T +S Y W+ IL A+
Sbjct: 194 ----GIVSYGRSDAKPP--AVFTRISHYQPWINQILQAN 226
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR LQ ++ L + C + + ++ + Q+C G + +
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAF 178
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G A+P V+T +S Y W+ IL A
Sbjct: 179 KGDSGGPLLCAGAAQ-----GIVSYGRSDAKPP--AVFTRISHYQPWINQILQA 225
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-GLTVTADVGLISGWGRLSEGGSLPHI 292
Y+ S +DI LL+L V + P+ + ++GWGR
Sbjct: 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDT 140
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ ++ L + C + + ++ + Q+C G + + +GDSGGPL C
Sbjct: 141 LQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----- 189
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GI S+G A+P V+T +S Y W+ IL A+
Sbjct: 190 GVAQGIVSYGRSDAKPP--AVFTRISHYRPWINQILQAN 226
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR LQ ++ L + C + + ++ + Q+C G + +
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAF 178
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G A+P V+T +S Y W+ IL A
Sbjct: 179 KGDSGGPLLCA-----GVAQGIVSYGRSDAKPP--AVFTRISHYRPWINQILQA 225
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-GLTVTADVGLISGWGRLSEGGSLPHI 292
Y+ S +DI LL+L V + P+ + ++GWGR
Sbjct: 83 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDT 142
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ ++ L + C + + ++ + Q+C G + + +GDSGGPL C
Sbjct: 143 LQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----- 191
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GI S+G A+P V+T +S Y W+ IL A+
Sbjct: 192 GVAQGIVSYGRSDAKPP--AVFTRISHYRPWINQILQAN 228
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR LQ ++ L + C + + ++ + Q+C G + +
Sbjct: 127 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAF 180
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G A+P V+T +S Y W+ IL A
Sbjct: 181 KGDSGGPLLCA-----GVAQGIVSYGRSDAKPP--AVFTRISHYRPWINQILQA 227
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-GLTVTADVGLISGWGRLSEGGSLPHI 292
Y+ S +DI LL+L V + P+ + ++GWGR
Sbjct: 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDT 140
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ ++ L + C + + ++ + Q+C G + + +GDSGGPL C
Sbjct: 141 LQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----- 189
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GI S+G A+P V+T +S Y W+ IL A+
Sbjct: 190 GVAQGIVSYGRSDAKPP--AVFTRISHYRPWINQILQAN 226
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR LQ ++ L + C + + ++ + Q+C G + +
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAF 178
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G A+P V+T +S Y W+ IL A
Sbjct: 179 KGDSGGPLLCA-----GVAQGIVSYGRSDAKPP--AVFTRISHYRPWINQILQA 225
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-GLTVTADVGLISGWGRLSEGGSLPHI 292
Y+ S +DI LL+L V + P+ + ++GWGR
Sbjct: 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDT 140
Query: 293 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 352
LQ ++ L + C + + ++ + Q+C G + + +GDSGGPL C
Sbjct: 141 LQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ- 193
Query: 353 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GI S+G A+P V+T +S Y W+ IL A+
Sbjct: 194 ----GIVSYGRSDAKPP--AVFTRISHYQPWINQILQAN 226
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR LQ ++ L + C + + ++ + Q+C G + +
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC------SHFRDFDHNLQLCVGNPRKTKSAF 178
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G A+P V+T +S Y W+ IL A
Sbjct: 179 KGDSGGPLLCAGAAQ-----GIVSYGRSDAKPP--AVFTRISHYQPWINQILQA 225
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 194 ARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVER--------IYTDFYDKSIYKNDIAL 245
R DF V T C+ + L A + QRR + I Y++ +NDI L
Sbjct: 34 VREDF--VLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIML 91
Query: 246 LELTRPFKFNEFVSPICLP------NPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVP 299
L+L+R + N V+P+ LP PG T ++GWGR+S L+ ++
Sbjct: 92 LQLSRRVRRNRNVNPVALPRAQEGLRPGTLCT-----VAGWGRVSMRRGT-DTLREVQLR 145
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
+ +C R + +Y + Q+C G ++ + +GDSGGPL C GI
Sbjct: 146 VQRDRQCLRIFG-----SYDPRRQICVGDRRERKAAFKGDSGGPLLC-----NNVAHGIV 195
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKSILYA 390
S+G P V+T VS + W+++ + +
Sbjct: 196 SYGKSSGVPP--EVFTRVSSFLPWIRTTMRS 224
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR+S L+ ++ + +C R + +Y + Q+C G ++ +
Sbjct: 124 VAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIFG-----SYDPRRQICVGDRRERKAAF 177
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G P V+T VS + W+++ + +
Sbjct: 178 KGDSGGPLLC-----NNVAHGIVSYGKSSGVPP--EVFTRVSSFLPWIRTTMRS 224
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 194 ARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVER--------IYTDFYDKSIYKNDIAL 245
R DF V T C+ + L A + QRR + I Y++ +NDI L
Sbjct: 34 VREDF--VLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIML 91
Query: 246 LELTRPFKFNEFVSPICLP------NPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVP 299
L+L+R + N V+P+ LP PG T ++GWGR+S L+ ++
Sbjct: 92 LQLSRRVRRNRNVNPVALPRAQEGLRPGTLCT-----VAGWGRVSMRRGT-DTLREVQLR 145
Query: 300 LTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGIT 359
+ +C R + +Y + Q+C G ++ + +GDSGGPL C GI
Sbjct: 146 VQRDRQCLRIFG-----SYDPRRQICVGDRRERKAAFKGDSGGPLLC-----NNVAHGIV 195
Query: 360 SWGVGCARPDFYGVYTLVSCYSDWVKSILYA 390
S+G P V+T VS + W+++ + +
Sbjct: 196 SYGKSSGVPP--EVFTRVSSFLPWIRTTMRS 224
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
++GWGR+S L+ ++ + +C R + +Y + Q+C G ++ +
Sbjct: 124 VAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIFG-----SYDPRRQICVGDRRERKAAF 177
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
+GDSGGPL C GI S+G P V+T VS + W+++ + +
Sbjct: 178 KGDSGGPLLC-----NNVAHGIVSYGKSSGVPP--EVFTRVSSFLPWIRTTMRS 224
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 226 VERIYTDFYDKSIYKNDIALLELTRPFKFNEFVS-PICLPNPGL--TVTADVGLISGWGR 282
V +Y FY + +NDIA+LEL+RP K + S P LP+ +DV L+SG+G
Sbjct: 73 VSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDV-LVSGYGD 131
Query: 283 LSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG-GLDSCQGDSG 341
H L++A++ + +ECR Y S QV K G L+S GD+G
Sbjct: 132 GQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLS-----LQVFCAQKVGVSLES--GDAG 184
Query: 342 GPLACPLPDGRYYLCGITSWGVGCARPD-FYGVYTLVSCYSDWVKSIL 388
P + L G+ ++ RP+ V+T V Y W++ I+
Sbjct: 185 DPTV-----QQDTLVGVAAY--FPKRPEGAPEVFTKVGSYVSWIQDII 225
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 56 VAGYELTRPFKFNEFVS-PICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEG 114
+A EL+RP K + S P LP+ R G+DV L+SG+G
Sbjct: 90 IAILELSRPLKLDGLKSKPAKLPDIEF-------------RPKTGSDV-LVSGYGDGQTM 135
Query: 115 GSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG-GLDSCQGDSGGPLA 173
H L++A++ + +ECR Y S QV K G L+S GD+G P
Sbjct: 136 DPKDHDLKSAQLTVVDLDECRTKYGPIFLS-----LQVFCAQKVGVSLES--GDAGDPTV 188
Query: 174 CPLPDGRYYLCGITSWGVGCARPD-FYGVYTLVSCYSDWVKSILYAR 219
+ L G+ ++ RP+ V+T V Y W++ I+ +
Sbjct: 189 -----QQDTLVGVAAY--FPKRPEGAPEVFTKVGSYVSWIQDIIKKK 228
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 222 QRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLI--- 277
Q+ VE+ + YD + NDI LL+L K N + LP + + G +
Sbjct: 68 QKLEVEKQFPHPKYDDRLVLNDIMLLKLKE--KANLTLGVGTLPISAKSNSIPPGRVCRA 125
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWGR + LQ ++ + + C+ + ++ + Q+C G + + +
Sbjct: 126 VGWGRTNVNEPPSDTLQEVKMRILDPQACKH------FEDFHQEPQLCVGNPKKIRNVYK 179
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C GI S+ + A+P V+T +S Y W+ IL
Sbjct: 180 GDSGGPLLCA-----GIAQGIASYVLRNAKPP--SVFTRISHYRPWINKIL 223
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 107 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 166
GWGR + LQ ++ + + C+ + ++ + Q+C G + + +G
Sbjct: 127 GWGRTNVNEPPSDTLQEVKMRILDPQACKH------FEDFHQEPQLCVGNPKKIRNVYKG 180
Query: 167 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
DSGGPL C GI S+ + A+P V+T +S Y W+ IL
Sbjct: 181 DSGGPLLCA-----GIAQGIASYVLRNAKPP--SVFTRISHYRPWINKIL 223
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 38/229 (16%)
Query: 172 LACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILY----ARHEQRRRV- 226
L L D R CG + D + T C D V ++Y ++E V
Sbjct: 18 LDITLQDQRRVWCG-------GSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVN 70
Query: 227 -ERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLP------NPGLTVTADVGLIS 278
ERI + ++ Y ND+AL+++ ++ + + PI LP N + A V S
Sbjct: 71 SERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEELNNKFENIWATV---S 126
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG + + ILQ + + C + Y + + +C G G C G
Sbjct: 127 GWG---QSNTDTVILQYTYNLVIDNDRCAQEYP----PGIIVESTIC-GDTSDGKSPCFG 178
Query: 339 DSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVK 385
DSGGP L D + L G+ S+ G GC G ++ V+ Y DW++
Sbjct: 179 DSGGPFV--LSD-KNLLIGVVSFVSGAGCESGKPVG-FSRVTSYMDWIQ 223
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 105 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 164
+SGWG + + ILQ + + C + Y + + +C G G C
Sbjct: 125 VSGWG---QSNTDTVILQYTYNLVIDNDRCAQEYP----PGIIVESTIC-GDTSDGKSPC 176
Query: 165 QGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVK 213
GDSGGP L D + L G+ S+ G GC G ++ V+ Y DW++
Sbjct: 177 FGDSGGPFV--LSD-KNLLIGVVSFVSGAGCESGKPVG-FSRVTSYMDWIQ 223
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 242 DIALLELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLSE 285
DIAL++L +P F++++ P+CLP+ L G ++GWG L E
Sbjct: 26 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 73
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 56 VAGYELTRPFKFNEFVSPICLPN----PGLTVTADVGLISGWGRLSE--GADVG 103
+A +L +P F++++ P+CLP+ L G ++GWG L E A+VG
Sbjct: 27 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG 80
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQA 295
Y D+AL++L K+ + + PICLP G T + + + E ++A
Sbjct: 105 EFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKA 164
Query: 296 -----AEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV------CTG--TKQG 331
E LT KE C R A GY + +V CTG +
Sbjct: 165 LFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYA 224
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
++C+GDSGGPL R+ G+ SWGV
Sbjct: 225 DPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 255
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLP-----NPGLTVTADVGLISGWGRLSEGADVGLISG 107
Y VA +L K+ + + PICLP L + L D+ +
Sbjct: 108 DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL-- 165
Query: 108 WGRLSEGGSLPHILQAAEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV---- 152
+ E LT KE C R A GY + +V
Sbjct: 166 ------------FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPR 213
Query: 153 --CTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
CTG + ++C+GDSGGPL R+ G+ SWGV
Sbjct: 214 FLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 255
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQA 295
Y D+AL++L K+ + + PICLP G T + + + E ++A
Sbjct: 312 EFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKA 371
Query: 296 -----AEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV------CTG--TKQG 331
E LT KE C R A GY + +V CTG +
Sbjct: 372 LFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYA 431
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
++C+GDSGGPL R+ G+ SWGV
Sbjct: 432 DPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 462
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLP-----NPGLTVTADVGLISGWGRLSEGADVGLISG 107
Y VA +L K+ + + PICLP L + L D+ +
Sbjct: 315 DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL-- 372
Query: 108 WGRLSEGGSLPHILQAAEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV---- 152
+ E LT KE C R A GY + +V
Sbjct: 373 ------------FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPR 420
Query: 153 --CTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
CTG + ++C+GDSGGPL R+ G+ SWGV
Sbjct: 421 FLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 462
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQA 295
Y D+AL++L K+ + + PICLP G T + + + E ++A
Sbjct: 304 EFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKA 363
Query: 296 -----AEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV------CTG--TKQG 331
E LT KE C R A GY + +V CTG +
Sbjct: 364 LFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYA 423
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
++C+GDSGGPL R+ G+ SWGV
Sbjct: 424 DPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 454
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLP-----NPGLTVTADVGLISGWGRLSEGADVGLISG 107
Y VA +L K+ + + PICLP L + L D+ +
Sbjct: 307 DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL-- 364
Query: 108 WGRLSEGGSLPHILQAAEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV---- 152
+ E LT KE C R A GY + +V
Sbjct: 365 ------------FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPR 412
Query: 153 --CTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
CTG + ++C+GDSGGPL R+ G+ SWGV
Sbjct: 413 FLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 454
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 217 YARH-EQRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPN----PGLT 269
Y R+ E+ +E+IY + + DIAL++L +P F++++ P+CLP+ L
Sbjct: 71 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 130
Query: 270 VTADVGLISGWGRLSE 285
G ++GWG L E
Sbjct: 131 QAGYKGRVTGWGNLKE 146
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYA--VAGYELTRPFKFNEFVSPICLPN----P 79
RT ++ I ++ + P+ R + +A +L +P F++++ P+CLP+
Sbjct: 68 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA 127
Query: 80 GLTVTADVGLISGWGRLSE 98
L G ++GWG L E
Sbjct: 128 SLLQAGYKGRVTGWGNLKE 146
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQA 295
Y D+AL++L K+ + + PICLP G T + + + E ++A
Sbjct: 537 EFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKA 596
Query: 296 -----AEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV------CTG--TKQG 331
E LT KE C R A GY + +V CTG +
Sbjct: 597 LFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYA 656
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
++C+GDSGGPL R+ G+ SWGV
Sbjct: 657 DPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 687
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLP-----NPGLTVTADVGLISGWGRLSEGADVGLISG 107
Y VA +L K+ + + PICLP L + L D+ +
Sbjct: 540 DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL-- 597
Query: 108 WGRLSEGGSLPHILQAAEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV---- 152
+ E LT KE C R A GY + +V
Sbjct: 598 ------------FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPR 645
Query: 153 --CTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
CTG + ++C+GDSGGPL R+ G+ SWGV
Sbjct: 646 FLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 687
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 237 SIYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQA 295
Y D+AL++L K+ + + PICLP G T + + + E ++A
Sbjct: 546 EFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKA 605
Query: 296 -----AEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV------CTG--TKQG 331
E LT KE C R A GY + +V CTG +
Sbjct: 606 LFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYA 665
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
++C+GDSGGPL R+ G+ SWGV
Sbjct: 666 DPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 696
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLP-----NPGLTVTADVGLISGWGRLSEGADVGLISG 107
Y VA +L K+ + + PICLP L + L D+ +
Sbjct: 549 DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL-- 606
Query: 108 WGRLSEGGSLPHILQAAEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV---- 152
+ E LT KE C R A GY + +V
Sbjct: 607 ------------FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPR 654
Query: 153 --CTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
CTG + ++C+GDSGGPL R+ G+ SWGV
Sbjct: 655 FLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 696
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 238 IYKNDIALLELTRPFKFNEFVSPICLP-NPGLTVTADVGLISGWGRLSEGGSLPHILQA- 295
Y D+AL++L K+ + + PICLP G T + + + E ++A
Sbjct: 557 FYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL 616
Query: 296 ----AEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV------CTG--TKQGG 332
E LT KE C R A GY + +V CTG +
Sbjct: 617 FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYAD 676
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
++C+GDSGGPL R+ G+ SWGV
Sbjct: 677 PNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 706
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 53 SYAVAGYELTRPFKFNEFVSPICLP-----NPGLTVTADVGLISGWGRLSEGADVGLISG 107
Y VA +L K+ + + PICLP L + L D+ +
Sbjct: 559 DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL-- 616
Query: 108 WGRLSEGGSLPHILQAAEVPLTPKE----------ECRRSYAVA-GYSNYLNQCQV---- 152
+ E LT KE C R A GY + +V
Sbjct: 617 ------------FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPR 664
Query: 153 --CTG--TKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 191
CTG + ++C+GDSGGPL R+ G+ SWGV
Sbjct: 665 FLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 706
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 217 YARHEQRRRVERI--------YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNP-- 266
++R R+VE+I + + K DIALL+L RP + ++++ P+CLP+
Sbjct: 66 HSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQT 125
Query: 267 --GLTVTADVGLISGWGRLSE 285
L G ++GWG E
Sbjct: 126 AAKLLHAGFKGRVTGWGNRRE 146
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 47 KEECRRSYAVAGYELTRPFKFNEFVSPICLPNP----GLTVTADVGLISGWGRLSE 98
KE R +A +L RP + ++++ P+CLP+ L G ++GWG E
Sbjct: 93 KENLDRD--IALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRE 146
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 9/48 (18%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPN-----PGLTVTADVGLISGWGR 282
+NDI LL+L P +F+E VS +CLPN P TV A +GWG+
Sbjct: 82 RNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCA----TTGWGK 125
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 60 ELTRPFKFNEFVSPICLPN-----PGLTVTADVGLISGWGR 95
+L P +F+E VS +CLPN P TV A +GWG+
Sbjct: 89 KLATPAQFSETVSAVCLPNVDDDFPPGTVCA----TTGWGK 125
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 18/162 (11%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG----LTVTADVGLISGWGRLSEGGSL 289
YD +ND++LLEL P + P+C P L + GL+SGW R G L
Sbjct: 129 YDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDL 186
Query: 290 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 349
+ L V L EEC + V + C+ + +D G +
Sbjct: 187 GNSLTTRPVTLVEGEECGQVLNVTVTTR--TYCERSSVAAMHWMD-------GSVVTREH 237
Query: 350 DGRYYLCGIT-SWGVGCARPDFYGVYTLVSCYSDWVKSILYA 390
G ++L G+ S VG + T VS YS W K I+ A
Sbjct: 238 RGSWFLTGVLGSQPVG--GQAHMVLVTKVSRYSLWFKQIMNA 277
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG----LTVTADVGLISGWGRLSEGGSL 289
YD +ND++LLEL P + P+C P L + GL+SGW R G L
Sbjct: 170 YDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDL 227
Query: 290 PHILQAAEVPLTPKEEC 306
+ L V L EEC
Sbjct: 228 GNSLTTRPVTLVEGEEC 244
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 240 KNDIALLELTRPFKFNEFVSPICLPN-----PGLTVTADVGLISGWGR 282
+NDI LL+L P +F+E VS + LPN P TV A +GWG+
Sbjct: 85 RNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCA----TTGWGK 128
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 35.4 bits (80), Expect = 0.065, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 222 QRRRVERIYTDF-YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLI-SG 279
Q+ ++ +++ + Y+ NDI LL+L+ F++ VS +CLP+ A + +G
Sbjct: 66 QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTG 125
Query: 280 WG 281
WG
Sbjct: 126 WG 127
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 21/175 (12%)
Query: 227 ERIYTDFYDKSIYKNDIALLELTRPFKFN-------EFVSPICLPNPGLTVTADVGLISG 279
++IY Y +N+ A++E P K + E S + P P +V L+SG
Sbjct: 70 KKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSV-----LVSG 124
Query: 280 WGRLSEGGSLPHI--LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
WG + SL + L A + ++ C Y Y+ C G +
Sbjct: 125 WGS-TNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGY 183
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYASV 392
GD+G P + +G L G+ S+ + +F V+ V Y +K I+ V
Sbjct: 184 GDAGDP---AVQNGT--LVGVASY-ISSMPSEFPSVFLRVGYYVLDIKDIISGKV 232
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 220 HEQRRRVERIYTD-FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ +I T ++ + NDI L++L+ P N V+ + LP + LIS
Sbjct: 61 NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LIS 119
Query: 279 GWGR 282
GWG
Sbjct: 120 GWGN 123
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 238 IYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWG--------RLSEGGSL 289
Y +DIALL+L + K + PICLP T+ A++ L G L S+
Sbjct: 314 FYGDDIALLKLAQKVKMSTHARPICLP---CTMEANLALRRPQGSTCRDHENELLNKQSV 370
Query: 290 P-HI--LQAAEVPLTPK-----EECRR--SYAVAGYSNYLNQCQV------CTGTKQGGL 333
P H L +++ + K C S + N + +V C+GT++
Sbjct: 371 PAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDE- 429
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
C+G+SGG + R++ G+ SWG+
Sbjct: 430 SPCKGESGGAVFLE-RRFRFFQVGLVSWGL 458
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 238 IYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWG--------RLSEGGSL 289
Y +DIALL+L + K + PICLP T+ A++ L G L S+
Sbjct: 322 FYGDDIALLKLAQKVKMSTHARPICLP---CTMEANLALRRPQGSTCRDHENELLNKQSV 378
Query: 290 P-HI--LQAAEVPLTPK-----EECRR--SYAVAGYSNYLNQCQV------CTGTKQGGL 333
P H L +++ + K C S + N + +V C+GT++
Sbjct: 379 PAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDE- 437
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
C+G+SGG + R++ G+ SWG+
Sbjct: 438 SPCKGESGGAVFLE-RRFRFFQVGLVSWGL 466
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 234 YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWG 281
++ + NDI L++L+ P N V+ + LP + LISGWG
Sbjct: 33 FNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWG 79
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
Length = 792
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 150 CQVCTGTKQGGLDSCQGDSGGPL 172
C V GT+QG + +CQGD P+
Sbjct: 17 CGVLVGTQQGRVVACQGDPDAPV 39
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 322 CQVCTGTKQGGLDSCQGDSGGPL 344
C V GT+QG + +CQGD P+
Sbjct: 17 CGVLVGTQQGRVVACQGDPDAPV 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,033,283
Number of Sequences: 62578
Number of extensions: 642330
Number of successful extensions: 3270
Number of sequences better than 100.0: 354
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 810
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)