RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2950
(406 letters)
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 211 bits (539), Expect = 1e-66
Identities = 63/174 (36%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLT----VTADV 274
EQ RRV ++ Y +DIALL L +P + V P+CLP +
Sbjct: 67 DEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRF 126
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
L+SGWG+L + G+ L VP ++C + G S + + C G G D
Sbjct: 127 SLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKD 186
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
SC+GDSGGP A G +YL GI SWG GCA +GVYT VS Y +W++ ++
Sbjct: 187 SCKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
Score = 178 bits (455), Expect = 4e-54
Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L +P + V P+CLP + + +SGWG+L + G+
Sbjct: 95 RLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSL-----------VSGWGQLLDRGATAL 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L VP ++C + G S + + C G G DSC+GDSGGP A G
Sbjct: 144 ELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHY-RG 202
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+YL GI SWG GCA +GVYT VS Y +W++ ++
Sbjct: 203 TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239
Score = 41.5 bits (98), Expect = 2e-04
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 59
+ + G+ L VP ++C + G
Sbjct: 134 QLLDRGATALELMVLNVPRLMTQDCLQQSRKVGD 167
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 209 bits (535), Expect = 3e-66
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLI 277
+ +R + RI + Y + DI+L EL+ P + V +CLP+ V +
Sbjct: 63 SKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFV 122
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+G+G L G + L+ A+V L C A Y++ + +C G+ +G D+CQ
Sbjct: 123 TGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQA---YNDAITPRMLCAGSLEGKTDACQ 179
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
GDSGGPL +YL GI SWG CA+P+ GVYT V+ DW+ S
Sbjct: 180 GDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229
Score = 177 bits (452), Expect = 8e-54
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL+ P + V +CLP+ + ++G+G L G +
Sbjct: 91 ELSSPVPYTNAVHRVCLPDASYEFQPGD---VMF-----------VTGFGALKNDGYSQN 136
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ A+V L C A Y++ + +C G+ +G D+CQGDSGGPL
Sbjct: 137 HLRQAQVTLIDATTCNEPQA---YNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARD 193
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
+YL GI SWG CA+P+ GVYT V+ DW+ S
Sbjct: 194 IWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229
Score = 41.0 bits (97), Expect = 3e-04
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
G + L+ A+V L C A
Sbjct: 127 ALKNDGYSQNHLRQAQVTLIDATTCNEPQAYND 159
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 209 bits (535), Expect = 4e-66
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLI 277
R ++ I Y++ NDIA++ L + +++ PI LP I
Sbjct: 69 QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSI 128
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG + G+ ILQ A+VPL E C++ + + +C G ++GG+DSCQ
Sbjct: 129 AGWGTVVYQGTTADILQEADVPLLSNERCQQQM----PEYNITENMICAGYEEGGIDSCQ 184
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILY 389
GDSGGPL C + R++L G+TS+G CA P+ GVY VS +++W++S L+
Sbjct: 185 GDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH 235
Score = 176 bits (448), Expect = 3e-53
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L + +++ PI LP + I+GWG + G+
Sbjct: 97 HLEFKVNYTDYIQPISLPEENQVFPPGR---NCS-----------IAGWGTVVYQGTTAD 142
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
ILQ A+VPL E C++ + + +C G ++GG+DSCQGDSGGPL C +
Sbjct: 143 ILQEADVPLLSNERCQQQM----PEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE-NN 197
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILY 217
R++L G+TS+G CA P+ GVY VS +++W++S L+
Sbjct: 198 RWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH 235
Score = 39.9 bits (94), Expect = 7e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
G+ ILQ A+VPL E C++
Sbjct: 133 TVVYQGTTADILQEADVPLLSNERCQQQM 161
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 208 bits (532), Expect = 1e-65
Identities = 78/168 (46%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
EQ V +I + +D ++ NDI+LL+L+ FN+ V+PI LP G T T DV +++
Sbjct: 73 SEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDV-IVT 131
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG SEGG+ P +LQ VPL E+CR Y ++ + +C G +GG DSCQG
Sbjct: 132 GWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY----GADEILDSMICAGVPEGGKDSCQG 187
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
DSGGPLA G YL GI SWG GCARP + GVYT VS + DW+K+
Sbjct: 188 DSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234
Score = 175 bits (446), Expect = 7e-53
Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 21/155 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ FN+ V+PI LP G T T DV +++GWG SEGG+ P
Sbjct: 101 KLSGSLTFNDNVAPIALPEQGHTATGDV----------------IVTGWGTTSEGGNTPD 144
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ VPL E+CR Y ++ + +C G +GG DSCQGDSGGPLA G
Sbjct: 145 VLQKVTVPLVSDEDCRADY----GADEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTG 199
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
YL GI SWG GCARP + GVYT VS + DW+K+
Sbjct: 200 STYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234
Score = 42.2 bits (100), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
TSEGG+ P +LQ VPL E+CR Y
Sbjct: 135 TTSEGGNTPDVLQKVTVPLVSDEDCRADY 163
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 208 bits (531), Expect = 1e-65
Identities = 70/174 (40%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
+++ I Y S +DIAL++L P ++ EF PI LP+ G T T +
Sbjct: 70 DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWV 129
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG E G + +ILQ +PL EEC++ Y + Q VC G K+GG D+C+
Sbjct: 130 TGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY----QDYKITQRMVCAGYKEGGKDACK 185
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGPL C +G + L GITSWG GCAR + GVYT V+ Y DW+ +S
Sbjct: 186 GDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQSS 238
Score = 175 bits (446), Expect = 8e-53
Identities = 63/157 (40%), Positives = 84/157 (53%), Gaps = 19/157 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L P ++ EF PI LP+ G T T + W ++GWG E G + +
Sbjct: 98 KLQAPLEYTEFQKPISLPSKGDTSTIYT---NCW-----------VTGWGFSKEKGEIQN 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
ILQ +PL EEC++ Y + Q VC G K+GG D+C+GDSGGPL C +G
Sbjct: 144 ILQKVNIPLVTNEECQKRY----QDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKH-NG 198
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ L GITSWG GCAR + GVYT V+ Y DW+
Sbjct: 199 MWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKT 235
Score = 40.3 bits (95), Expect = 5e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ E G + +ILQ +PL EEC++ Y
Sbjct: 134 FSKEKGEIQNILQKVNIPLVTNEECQKRY 162
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 207 bits (528), Expect = 4e-65
Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLI 277
Q RR++RI + F++ + DIALLEL +P +++ V PI LP+ A +
Sbjct: 74 GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWV 133
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG GG+ ILQ E+ + + C + C G GG+DSCQ
Sbjct: 134 TGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMM-----CVGFLSGGVDSCQ 188
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
GDSGGPL+ DGR + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 189 GDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKE 237
Score = 174 bits (443), Expect = 2e-52
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL +P +++ V PI LP+ A G + ++GWG GG+
Sbjct: 102 ELEKPAEYSSMVRPISLPDASHVFPA-------------GKAI-WVTGWGHTQYGGTGAL 147
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
ILQ E+ + + C + C G GG+DSCQGDSGGPL+ DG
Sbjct: 148 ILQKGEIRVINQTTCENLLPQQITPRMM-----CVGFLSGGVDSCQGDSGGPLSSVEADG 202
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
R + G+ SWG GCA+ + GVYT + + DW+K
Sbjct: 203 RIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKE 237
Score = 39.1 bits (92), Expect = 0.001
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
T GG+ ILQ E+ + + C
Sbjct: 138 HTQYGGTGALILQKGEIRVINQTTCENLL 166
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 205 bits (525), Expect = 1e-64
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
V+ I D Y + DIALL+L + + PI LP+ G +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWV 129
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG + + LQ A++PL EEC++ Y + + +C G ++GG D+C+
Sbjct: 130 TGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACK 185
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
GDSGGPL+C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 186 GDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234
Score = 173 bits (440), Expect = 5e-52
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 19/156 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L + + PI LP+ G W ++GWG + +
Sbjct: 98 KLETTVNYTDSQRPISLPSKGERNVIYT---DCW-----------VTGWGYRKLRDKIQN 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+C +
Sbjct: 144 TLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGGPLSCKH-NE 198
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 199 VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234
Score = 39.9 bits (94), Expect = 6e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ + LQ A++PL EEC++ Y
Sbjct: 134 YRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 205 bits (525), Expect = 1e-64
Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA----DV 274
E VE + + + K Y DIA+L L P F V+P CLP +
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G++SG+GR E G L+ EVP + C+ S + N C G D
Sbjct: 125 GIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF-----CAGYDTKQED 179
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+CQGDSGGP Y++ GI SWG GCAR YG+YT V+ + W+ +
Sbjct: 180 ACQGDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 172 bits (439), Expect = 7e-52
Identities = 51/157 (32%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L P F V+P CLP A+ L++ G++SG+GR E G
Sbjct: 93 RLKTPITFRMNVAPACLPERDW---AESTLMTQ--------KTGIVSGFGRTHEKGEQST 141
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ EVP + C+ S + N C G D+CQGDSGGP
Sbjct: 142 RLKMLEVPYVDRNSCKLSSSFIITQNMF-----CAGYDTKQEDACQGDSGGPHVTRF-KD 195
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
Y++ GI SWG GCAR YG+YT V+ + W+ +
Sbjct: 196 TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232
Score = 40.7 bits (96), Expect = 4e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
RT E G L+ EVP + C+ S
Sbjct: 132 RTHEKGEQSTRLKMLEVPYVDRNSCKLSS 160
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 205 bits (524), Expect = 2e-64
Identities = 69/174 (39%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 220 HEQRRRVERIYT-DFYDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG- 275
EQ+R V RI ++ +I Y +DIALLEL P N +V+PIC+ + T
Sbjct: 64 TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFG 123
Query: 276 --LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
+SGWGR+ G +LQ VPL + C RS +N C G +GG
Sbjct: 124 SGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNN-----MFCAGFHEGGR 178
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
DSCQGDSGGP +G +L GI SWG CA YG+YT VS Y +W+K
Sbjct: 179 DSCQGDSGGPHVTE-VEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEK 231
Score = 176 bits (448), Expect = 3e-53
Identities = 57/156 (36%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL P N +V+PIC+ + T G +SGWGR+ G
Sbjct: 94 ELDEPLVLNSYVTPICIADKEYTNIFLKF------------GSGYVSGWGRVFHKGRSAL 141
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ VPL + C RS +N C G +GG DSCQGDSGGP +G
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNN-----MFCAGFHEGGRDSCQGDSGGPHVTE-VEG 195
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
+L GI SWG CA YG+YT VS Y +W+K
Sbjct: 196 TSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEK 231
Score = 41.4 bits (98), Expect = 2e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
R G +LQ VPL + C RS
Sbjct: 132 RVFHKGRSALVLQYLRVPLVDRATCLRST 160
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 203 bits (519), Expect = 1e-63
Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ V+ YD + ++ND+AL+EL N FV PICLP A V ++S
Sbjct: 81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMV-IVS 139
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG+ P L E+P+ C+++YA + + +C G K+GG D+C G
Sbjct: 140 GWGKQFLQRF-PETLMEIEIPIVDHSTCQKAYAP--LKKKVTRDMICAGEKEGGKDACAG 196
Query: 339 DSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
DSGGP+ G++YL G SWG C + D YGVY+ + DW++ +
Sbjct: 197 DSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 169 bits (429), Expect = 3e-50
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL N FV PICLP EGA V ++SGWG+ P
Sbjct: 109 ELLESPVLNAFVMPICLPEGPQQ---------------EGAMV-IVSGWGKQFLQRF-PE 151
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-D 178
L E+P+ C+++YA + + +C G K+GG D+C GDSGGP+
Sbjct: 152 TLMEIEIPIVDHSTCQKAYAP--LKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRER 209
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
G++YL G SWG C + D YGVY+ + DW++ +
Sbjct: 210 GQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 38.4 bits (90), Expect = 0.003
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
P L E+P+ C+++YA ++T
Sbjct: 143 KQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVT 178
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 199 bits (509), Expect = 2e-62
Identities = 52/172 (30%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 216 LYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
L + + R ++ + K Y D AL++L +P P
Sbjct: 57 LQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----PTLKIATTTAYNQGT 111
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
++GWG EGGS L A VP CR S + +C G D
Sbjct: 112 FTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS----SFILVANEMICAGYDTKQED 167
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
+CQGDSGGP+ + GI SWG GCAR YGVYT VS ++ + S
Sbjct: 168 TCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219
Score = 161 bits (409), Expect = 1e-47
Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 24/155 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L +P P ++GWG EG GS
Sbjct: 89 KLAQPINQ-----PTLKIATTTAYNQGTFTVAGWGANREG---------------GSQQR 128
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L A VP CR S + +C G D+CQGDSGGP+
Sbjct: 129 YLLKANVPFVSDAACRSSS----SFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNAD 184
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
+ GI SWG GCAR YGVYT VS ++ + S
Sbjct: 185 EWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAV---------AGYE 60
EGGS L A VP CR S + AGY+
Sbjct: 119 ANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYD 162
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 200 bits (512), Expect = 2e-62
Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 9/189 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
+ ++ I Y + + DIALL+L+RP F+ ++ PI LP + + +
Sbjct: 67 DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTV 126
Query: 278 SGWGRLSEGGSL--PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ---VCTGTKQGG 332
+GWG ++ SL P LQ EVPL +E C Y + + Q VC G +GG
Sbjct: 127 TGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGG 186
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYASV 392
D+CQGDSGGPL+CP+ +G +YL GI SWG C + GVYTL S Y+ W++S + +
Sbjct: 187 KDACQGDSGGPLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV-TEL 244
Query: 393 SAKRVNQTS 401
+ V QT
Sbjct: 245 QPRVVPQTQ 253
Score = 167 bits (424), Expect = 2e-49
Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSL-- 117
+L+RP F+ ++ PI LP + G ++GWG ++ SL
Sbjct: 95 QLSRPITFSRYIRPISLPAAQASFPN-------------GLHC-TVTGWGHVAPSVSLLT 140
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ---VCTGTKQGGLDSCQGDSGGPLAC 174
P LQ EVPL +E C Y + + Q VC G +GG D+CQGDSGGPL+C
Sbjct: 141 PKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 175 PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
P+ +G +YL GI SWG C + GVYTL S Y+ W++S +
Sbjct: 201 PV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241
Score = 34.2 bits (79), Expect = 0.054
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 26 RTSEGGSL--PHILQAAEVPLTPKEECRRSYAVAGYELTRPF 65
+ SL P LQ EVPL +E C Y + F
Sbjct: 131 HVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHF 172
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 199 bits (508), Expect = 4e-62
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 207 CYSDWVKSILYAR-----------HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKF 254
C +++ Q V+ I+ + YD + +ND+++++ F
Sbjct: 44 CMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITF 103
Query: 255 NEFVSPICLPNPGLTVTADVGLISGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVA 313
+ V PIC P+P SGWG ++ GG P +L+ + +T C Y
Sbjct: 104 DINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY--- 160
Query: 314 GYSNYLNQCQVCTGTKQG--GLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFY 371
S+ + +C G DSCQGDSGGPL+ G + L GI SWG+GCA +
Sbjct: 161 -TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASG-YP 218
Query: 372 GVYTLVSCYSDWVKSILYAS 391
GVY+ V ++ W+ + +
Sbjct: 219 GVYSRVGFHAGWITDTITNN 238
Score = 166 bits (423), Expect = 2e-49
Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 21/159 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+ F+ V PIC P+P SGWG ++ G G P
Sbjct: 96 KTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSG--------------GVCCPA 141
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG--GLDSCQGDSGGPLACPLP 177
+L+ + +T C Y S+ + +C G DSCQGDSGGPL+
Sbjct: 142 VLRYVTLNITTNAFCDAVY----TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDG 197
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
G + L GI SWG+GCA + GVY+ V ++ W+ +
Sbjct: 198 SGIFSLVGIVSWGIGCASG-YPGVYSRVGFHAGWITDTI 235
Score = 36.0 bits (84), Expect = 0.012
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 26 RTSEGG-SLPHILQAAEVPLTPKEECRRSY 54
+ GG P +L+ + +T C Y
Sbjct: 131 TINSGGVCCPAVLRYVTLNITTNAFCDAVY 160
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 198 bits (506), Expect = 1e-61
Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV---- 274
E ++ ++ Y KS NDIALL L +P ++ + PICLP+ GL
Sbjct: 65 WELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQ 124
Query: 275 -GLISGWGRLSEGG-----SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGT 328
L++GWG S + +L ++P+ P EC + N +C G
Sbjct: 125 ETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSEN-----MLCAGI 179
Query: 329 KQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
D+C+GDSGGP+ G ++L G+ SWG GC YGVYT VS Y DW+ +
Sbjct: 180 LGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238
Score = 165 bits (419), Expect = 1e-48
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG---- 115
L +P ++ + PICLP+ GL G + L++GWG S
Sbjct: 93 HLAQPATLSQTIVPICLPDSGLAEREL---------NQAGQE-TLVTGWGYHSSREKEAK 142
Query: 116 -SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLAC 174
+ +L ++P+ P EC + N +C G D+C+GDSGGP+
Sbjct: 143 RNRTFVLNFIKIPVVPHNECSEVMSNMVSEN-----MLCAGILGDRQDACEGDSGGPMVA 197
Query: 175 PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
G ++L G+ SWG GC YGVYT VS Y DW+ +
Sbjct: 198 SF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238
Score = 33.8 bits (78), Expect = 0.072
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 26 RTSEGG-----SLPHILQAAEVPLTPKEECRRSY 54
S + +L ++P+ P EC
Sbjct: 133 YHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM 166
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 197 bits (503), Expect = 2e-61
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 220 HEQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-- 275
H + E ++ + + + NDIAL++L N ++PICLP
Sbjct: 64 HYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDI 123
Query: 276 -LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNY-LNQCQVCTGTKQGGL 333
SGWG + G L L ++P+ ++C +Y Y + +C G + GG
Sbjct: 124 GTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGK 182
Query: 334 DSCQGDSGGPLACPLP-DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
DSC+GDSGG L R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 183 DSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 166 bits (422), Expect = 3e-49
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L N ++PICLP D+G SGWG + G L
Sbjct: 93 KLNNKVVINSNITPICLPRKEAESFMRTD------------DIGTASGWGLT-QRGFLAR 139
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNY-LNQCQVCTGTKQGGLDSCQGDSGGPLACPLP- 177
L ++P+ ++C +Y Y + +C G + GG DSC+GDSGG L
Sbjct: 140 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE 199
Query: 178 DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 200 TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
Score = 36.5 bits (85), Expect = 0.011
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 59
++ G L L ++P+ ++C +Y Y
Sbjct: 131 LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPY 163
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 195 bits (497), Expect = 2e-60
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 10/175 (5%)
Query: 220 HEQRRRVERIYT----DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA-DV 274
+ R+ + ++ DIALLEL + PICLP+ +
Sbjct: 68 KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLM 127
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SG+G + E H L+ +P+ + C + +Q C G D
Sbjct: 128 GYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 185
Query: 335 SCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+CQGDSGG A P+ R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 186 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238
Score = 167 bits (424), Expect = 1e-49
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 19/158 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL + PICLP+ + G+ +SG+G + E H
Sbjct: 99 ELENSVTLGPNLLPICLPDNDTFYDLGL---MGY-----------VSGFGVMEEKI--AH 142
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD- 178
L+ +P+ + C + +Q C G D+CQGDSGG A P+
Sbjct: 143 DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNT 202
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 203 DRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238
Score = 32.6 bits (75), Expect = 0.15
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 2/34 (5%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 59
E H L+ +P+ + C
Sbjct: 135 VMEEKI--AHDLRFVRLPVANPQACENWLRGKNR 166
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 199 bits (507), Expect = 2e-60
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Query: 220 HEQRRRVERIY-------TDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA 272
H + V+ + + NDIAL+ L+ P E++ P+CLP G +
Sbjct: 183 HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVD 242
Query: 273 D-VGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG 331
+ ++GWG G +LQ A VP+ + C + Y N + C G +G
Sbjct: 243 GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF---YGNQIKPKMFCAGYPEG 299
Query: 332 GLDSCQGDSGGPLACPLP---DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
G+D+CQGDSGGP C R+ LCGI SWG GCA GVYT VS + +W+ +
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359
Query: 389 YAS 391
Sbjct: 360 KTH 362
Score = 170 bits (432), Expect = 2e-49
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L+ P E++ P+CLP G + ++GWG G
Sbjct: 217 HLSSPLPLTEYIQPVCLPAAGQALVDGK---ICT-----------VTGWGNTQYYGQQAG 262
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-- 177
+LQ A VP+ + C + Y N + C G +GG+D+CQGDSGGP C
Sbjct: 263 VLQEARVPIISNDVCNGADF---YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSIS 319
Query: 178 -DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
R+ LCGI SWG GCA GVYT VS + +W+ +
Sbjct: 320 RTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359
Score = 39.0 bits (91), Expect = 0.002
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
T G +LQ A VP+ + C +
Sbjct: 253 NTQYYGQQAGVLQEARVPIISNDVCNGADFYGN 285
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 204 bits (520), Expect = 6e-60
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLI 277
V+ I D Y + DIALL+L + + PICLP+ G +
Sbjct: 457 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWV 516
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG + + LQ A++PL EEC++ Y + + +C G ++GG D+C+
Sbjct: 517 TGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACK 572
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
GDSGGPL+C + ++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 573 GDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621
Score = 171 bits (436), Expect = 5e-48
Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 19/156 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L + + PICLP+ G W ++GWG + +
Sbjct: 485 KLETTVNYTDSQRPICLPSKGDRNVIYT---DCW-----------VTGWGYRKLRDKIQN 530
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ A++PL EEC++ Y + + +C G ++GG D+C+GDSGGPL+C +
Sbjct: 531 TLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGGPLSCKH-NE 585
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
++L GITSWG GCA+ + GVYT V Y DW+
Sbjct: 586 VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621
Score = 40.2 bits (94), Expect = 0.001
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ + LQ A++PL EEC++ Y
Sbjct: 521 YRKLRDKIQNTLQKAKIPLVTNEECQKRY 549
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 193 bits (493), Expect = 7e-60
Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 221 EQRRRVERIYT-DFYDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGL 276
Q V+ + Y Y NDIA+L L + LP A +
Sbjct: 69 TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCV 128
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
ISGWGR +LP ILQ + +P+ +C + G +N + +C G +C
Sbjct: 129 ISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDN-HICVQDPAGNTGAC 187
Query: 337 QGDSGGPLACPLPDGRYYLCGITSW----GVGCARPDFYGVYTLVSCYSDWVKS 386
GDSGGPL C PDG + G+TSW G+G PD+ VYT VS Y W+
Sbjct: 188 NGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239
Score = 165 bits (420), Expect = 4e-49
Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L + LP A +ISGWGR +LP
Sbjct: 98 HLATSISLGGNIQAAVLPANNNNDYAG--------------TTCVISGWGRTDGTNNLPD 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
ILQ + +P+ +C + G +N + +C G +C GDSGGPL C PDG
Sbjct: 144 ILQKSSIPVITTAQCTAAMVGVGGANIWDN-HICVQDPAGNTGACNGDSGGPLNC--PDG 200
Query: 180 RYYLCGITSW----GVGCARPDFYGVYTLVSCYSDWVKS 214
+ G+TSW G+G PD+ VYT VS Y W+
Sbjct: 201 GTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239
Score = 41.1 bits (97), Expect = 3e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
RT +LP ILQ + +P+ +C + G
Sbjct: 134 RTDGTNNLPDILQKSSIPVITTAQCTAAMVGVG 166
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 193 bits (493), Expect = 8e-60
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 220 HEQRRRVERIYT-DFYDKSI--YKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG- 275
+V ++ ++ + NDIALL+L P + + CLP G + +
Sbjct: 68 GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVC 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
++GWGRL G+ P ILQ ++ + C + + + + +C G G + S
Sbjct: 128 YVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGW---WGSTVKTNMICAG-GDGIISS 183
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKSIL 388
C GDSGGPL C +G++ + GI S+G +GC V+T VS Y DW+ S++
Sbjct: 184 CNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 163 bits (415), Expect = 3e-48
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L P + + CLP G + ++GWGRL G+ P
Sbjct: 98 KLASPVSLTDKIQLGCLPAAGTILPN-------------NYVC-YVTGWGRLQTNGASPD 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
ILQ ++ + C + + + + +C G G + SC GDSGGPL C +G
Sbjct: 144 ILQQGQLLVVDYATCSKPGW---WGSTVKTNMICAG-GDGIISSCNGDSGGPLNCQGANG 199
Query: 180 RYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKSIL 216
++ + GI S+G +GC V+T VS Y DW+ S++
Sbjct: 200 QWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 37.2 bits (87), Expect = 0.005
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAV----------AGYE 60
R G+ P ILQ ++ + C + AG +
Sbjct: 134 RLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGD 178
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 194 bits (496), Expect = 9e-60
Identities = 65/174 (37%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD--VGL 276
Q R VE+I + Y S NDIAL+++T P F+ P CLP
Sbjct: 78 PLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCW 137
Query: 277 ISGWGRLSEGGSLPH-ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
++GWG L E +LQ A V L C + Y+ + VC G +G +D+
Sbjct: 138 VAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRW---YNGRIRSTNVCAGYPEGKIDT 194
Query: 336 CQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
CQGDSGGPL C + Y + GITSWGVGCAR GVYT Y +W+ S +
Sbjct: 195 CQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 164 bits (416), Expect = 6e-48
Identities = 53/159 (33%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
++T P F+ P CLP ++GWG L E
Sbjct: 106 KITPPVTCGHFIGPGCLPQFRAGP------------PRVPQTC-WVAGWGFLQENARRTS 152
Query: 120 -ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP- 177
+LQ A V L C + Y+ + VC G +G +D+CQGDSGGPL C
Sbjct: 153 PMLQEARVDLIDLGLCNSTRW---YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSA 209
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ Y + GITSWGVGCAR GVYT Y +W+ S +
Sbjct: 210 ENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 33.1 bits (76), Expect = 0.13
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 26 RTSEGGSLPH-ILQAAEVPLTPKEECRRSYAVAG 58
E +LQ A V L C + G
Sbjct: 143 FLQENARRTSPMLQEARVDLIDLGLCNSTRWYNG 176
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 192 bits (490), Expect = 1e-59
Identities = 61/171 (35%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
E VE + + + K Y DIA+L L P F V+P LP LIS
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPAT-GTKCLIS 123
Query: 279 GWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG + G P LQ + P+ + +C SY + C G +GG DSCQ
Sbjct: 124 GWGNTASSGADYPDELQCLDAPVLSQAKCEASY-----PGKITSNMFCVGFLEGGKDSCQ 178
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGP+ C L G+ SWG GCA+ + GVYT V Y W+K+ +
Sbjct: 179 GDSGGPVVC-----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224
Score = 159 bits (406), Expect = 4e-47
Identities = 52/157 (33%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L P F V+P LP LISGWG + G P
Sbjct: 93 RLKTPITFRMNVAPASLPTAPPAT-GTKCLISGWGNTASS--------------GADYPD 137
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ + P+ + +C SY + C G +GG DSCQGDSGGP+ C
Sbjct: 138 ELQCLDAPVLSQAKCEASY-----PGKITSNMFCVGFLEGGKDSCQGDSGGPVVC----- 187
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA+ + GVYT V Y W+K+ +
Sbjct: 188 NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224
Score = 35.6 bits (83), Expect = 0.015
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
S G P LQ + P+ + +C SY
Sbjct: 129 ASSGADYPDELQCLDAPVLSQAKCEASY 156
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 191 bits (489), Expect = 1e-59
Identities = 56/170 (32%), Positives = 77/170 (45%), Gaps = 12/170 (7%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
EQ R+ Y NDI L++L++P N +V P+ LP +S
Sbjct: 61 SEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMC-TVS 119
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG + + LQ +P+ +C SY + C G +GG DSCQG
Sbjct: 120 GWGNTMSSTADSNKLQCLNIPILSYSDCNNSY-----PGMITNAMFCAGYLEGGKDSCQG 174
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSGGP+ C L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 175 DSGGPVVC-----NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 159 bits (406), Expect = 3e-47
Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L++P N +V P+ LP +SGWG + +
Sbjct: 89 KLSKPATLNTYVQPVALPTSCAPAGTMC----------------TVSGWGNTMSSTADSN 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ +C SY + C G +GG DSCQGDSGGP+ C
Sbjct: 133 KLQCLNIPILSYSDCNNSY-----PGMITNAMFCAGYLEGGKDSCQGDSGGPVVC----- 182
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG GCA P GVY V ++DW+ S +
Sbjct: 183 NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 39.4 bits (93), Expect = 8e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
T + + LQ +P+ +C SY
Sbjct: 123 NTMSSTADSNKLQCLNIPILSYSDCNNSY 151
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 192 bits (491), Expect = 2e-59
Identities = 63/176 (35%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 220 HEQRRRVERIYT--DFYDKSIYKNDIALLELTRPF----KFNEFVSPICLPNPGLTVTAD 273
Q +E+ + + +D+ L+ L + ++FV PICLP PG T A
Sbjct: 66 VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAG 125
Query: 274 VG-LISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG 331
I+GWG L E S L+ A VPL +C Y ++ +C G
Sbjct: 126 HKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV---YGADISPNMLCAGYFDC 182
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D+CQGDSGGPLAC +G YL GI SWG GC R GVYT V+ Y DW+
Sbjct: 183 KSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 237
Score = 162 bits (411), Expect = 1e-47
Identities = 60/165 (36%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
R ++FV PICLP PG T A I+GWG L E L
Sbjct: 102 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDEN--------------VSGYSSSL 147
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A VPL +C Y ++ +C G D+CQGDSGGPLAC +G
Sbjct: 148 REALVPLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVA 203
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRV 226
YL GI SWG GC R GVYT V+ Y DW+ + R +R
Sbjct: 204 YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI--RPPRRLVA 246
Score = 33.0 bits (76), Expect = 0.12
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 26 RTSEGGSL-PHILQAAEVPLTPKEECRRSYAVAG 58
E S L+ A VPL +C
Sbjct: 135 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGA 168
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 190 bits (485), Expect = 1e-58
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 220 HEQRRRVERIYT--DF-YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VG 275
EQ V++I + D DIALL L + N +V LP G + +
Sbjct: 68 TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPC 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
I+GWG G L LQ A +P C S + + + VC G G
Sbjct: 128 YITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSY---WGSTVKNSMVCAG-GDGVRSG 183
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKSILYAS 391
CQGDSGGPL C + +G+Y + G+TS+ +GC V+T VS Y W+ +++ ++
Sbjct: 184 CQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN 240
Score = 161 bits (410), Expect = 2e-47
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 21/159 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L + N +V LP G + + I+GWG G L
Sbjct: 98 RLAQSVTLNSYVQLGVLPRAGTILANN--------------SPCYITGWGLTRTNGQLAQ 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ A +P C S + + + VC G G CQGDSGGPL C + +G
Sbjct: 144 TLQQAYLPTVDYAICSSSSY---WGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLV-NG 198
Query: 180 RYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKSIL 216
+Y + G+TS+ +GC V+T VS Y W+ +++
Sbjct: 199 QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 10/45 (22%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAV----------AGYE 60
T G L LQ A +P C S AG +
Sbjct: 134 LTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGD 178
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 190 bits (485), Expect = 1e-58
Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 11/177 (6%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
+Q V RI + DIALLEL P + V + LP T + +
Sbjct: 68 QDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWV 127
Query: 278 SGWGRLSEGGSL--PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC----QVCTGTKQG 331
+GWG + L P L+ +VP+ C Y + Y+ + +C G
Sbjct: 128 TGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NS 185
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSCQGDSGGPL C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+ +
Sbjct: 186 QRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 158 bits (402), Expect = 2e-46
Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSL-- 117
EL P + V + LP T + W ++GWG + L
Sbjct: 96 ELEEPVNISSRVHTVMLPPASETFPPGM---PCW-----------VTGWGDVDNDEPLPP 141
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC----QVCTGTKQGGLDSCQGDSGGPLA 173
P L+ +VP+ C Y + Y+ + +C G DSCQGDSGGPL
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLV 199
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
C + +G + G+ SWG GCA+P+ G+YT V+ Y DW+ +
Sbjct: 200 CKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 35.3 bits (82), Expect = 0.023
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 26 RTSEGGSL--PHILQAAEVPLTPKEECRRSYAVAGYELTRP 64
L P L+ +VP+ C Y + Y
Sbjct: 132 DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDV 172
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 191 bits (488), Expect = 1e-58
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 218 ARHEQRRRVERIYT--DFYDKSI-YKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD- 273
+E D+ D S +DIAL+ L R +F ++ P+CLP P V
Sbjct: 106 PDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQ 165
Query: 274 VGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
+ GWGR E G I Q VP+ E+C +++ AG + Q+C G +
Sbjct: 166 RLTVVGWGRT-ETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVR--VRSSQLCAGG-EKAK 221
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
DSC GDSGGPL + +++L G+ S+G C + G+YT V Y DW++ +
Sbjct: 222 DSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
Score = 164 bits (417), Expect = 3e-48
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L R +F ++ P+CLP P V L + GWGR E G
Sbjct: 138 RLNRQVEFTNYIRPVCLPQPNEEVQVGQRLT--------------VVGWGRT-ETGQYST 182
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
I Q VP+ E+C +++ AG + Q+C G + DSC GDSGGPL +
Sbjct: 183 IKQKLAVPVVHAEQCAKTFGAAGVR--VRSSQLCAGG-EKAKDSCGGDSGGPLLAERANQ 239
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+++L G+ S+G C + G+YT V Y DW++ +
Sbjct: 240 QFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
Score = 39.6 bits (93), Expect = 0.001
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
+E G I Q VP+ E+C +++ AG +
Sbjct: 174 RTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVR 209
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 193 bits (491), Expect = 2e-58
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 220 HEQRRRVERIYT----DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA-DV 274
+ R+ + ++ DIALLEL + PICLP+ +
Sbjct: 157 KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLM 216
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SG+G + E + H L+ +P+ + C + +Q C G D
Sbjct: 217 GYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 274
Query: 335 SCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+CQGDSGG A P+ R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 275 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
Score = 165 bits (419), Expect = 6e-48
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 19/158 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL + PICLP+ +G +SG+G + E + H
Sbjct: 188 ELENSVTLGPNLLPICLPDNDTFYDLG--------------LMGYVSGFGVMEEK--IAH 231
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD- 178
L+ +P+ + C + +Q C G D+CQGDSGG A P+
Sbjct: 232 DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNT 291
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 292 DRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
Score = 33.2 bits (76), Expect = 0.15
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 31 GSLPHILQAAEVPLTPKEECRRSYAVAGY 59
+ H L+ +P+ + C
Sbjct: 227 EKIAHDLRFVRLPVANPQACENWLRGKNR 255
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 189 bits (483), Expect = 2e-58
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 221 EQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
++ + +ND+ALL+L K + + P+ LP+ V A +
Sbjct: 63 GLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSM 122
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG +GG L +L+ ++ + C S ++ L+ VC C+
Sbjct: 123 AGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRF---WNGSLSPSMVCLAADSKDQAPCK 179
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGPL C L G+ S+ C V T V+ Y W++ + S
Sbjct: 180 GDSGGPLVC---GKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRS 231
Score = 159 bits (405), Expect = 9e-47
Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 21/167 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L K + + P+ LP+ V A ++GWG +GG L
Sbjct: 91 QLDGKVKPSRTIRPLALPSKRQVVAAG--------------TRCSMAGWGLTHQGGRLSR 136
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L+ ++ + C S ++ L+ VC C+GDSGGPL C
Sbjct: 137 VLRELDLQVLDTRMCNNSRF---WNGSLSPSMVCLAADSKDQAPCKGDSGGPLVC---GK 190
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSILYARHEQRRR 225
L G+ S+ C V T V+ Y W++ + +
Sbjct: 191 GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRSALEHHH 237
Score = 37.2 bits (87), Expect = 0.005
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
T +GG L +L+ ++ + C S
Sbjct: 127 LTHQGGRLSRVLRELDLQVLDTRMCNNSR 155
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 189 bits (483), Expect = 3e-58
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-I 277
V+ I+ + ++ + +NDIAL++L + + + CLP+ G + D +
Sbjct: 82 GSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFV 141
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWGRL G + LQ P+ C + + + + VC G G + +C
Sbjct: 142 TGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDW---WGTTVKETMVCAG-GDGVISACN 197
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVG--CARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C DG++ + GI S+G G C V+T VS Y DW+ L
Sbjct: 198 GDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
Score = 156 bits (398), Expect = 1e-45
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 21/159 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L + + + CLP+ G + D + ++GWGRL G +
Sbjct: 110 KLAETVELGDTIQVACLPSEGSLLPQDY---PCF-----------VTGWGRLYTNGPIAA 155
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ P+ C + + + + VC G G + +C GDSGGPL C DG
Sbjct: 156 ELQQGLQPVVDYATCSQRDW---WGTTVKETMVCAG-GDGVISACNGDSGGPLNCQA-DG 210
Query: 180 RYYLCGITSWGVG--CARPDFYGVYTLVSCYSDWVKSIL 216
++ + GI S+G G C V+T VS Y DW+ L
Sbjct: 211 QWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
Score = 37.6 bits (88), Expect = 0.005
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 10/45 (22%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAV----------AGYE 60
R G + LQ P+ C + AG +
Sbjct: 146 RLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGD 190
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 190 bits (486), Expect = 3e-58
Identities = 63/176 (35%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 220 HEQRRRVERIYT--DFYDKSIYKNDIALLELTRPF----KFNEFVSPICLPNPGLTVTAD 273
Q +E+ + + +D+ L+ L + ++FV PICLP PG T A
Sbjct: 101 VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAG 160
Query: 274 VG-LISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQG 331
I+GWG L E S L+ A VPL +C Y ++ +C G
Sbjct: 161 HKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV---YGADISPNMLCAGYFDC 217
Query: 332 GLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D+CQGDSGGPLAC +G YL GI SWG GC R GVYT V+ Y DW+
Sbjct: 218 KSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 272
Score = 160 bits (406), Expect = 1e-46
Identities = 60/165 (36%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
R ++FV PICLP PG T A I+GWG L E L
Sbjct: 137 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDEN--------------VSGYSSSL 182
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ A VPL +C Y ++ +C G D+CQGDSGGPLAC +G
Sbjct: 183 REALVPLVADHKCSSPEV---YGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVA 238
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRV 226
YL GI SWG GC R GVYT V+ Y DW+ + R +R
Sbjct: 239 YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI--RPPRRLVA 281
Score = 32.7 bits (75), Expect = 0.16
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 26 RTSEGGSL-PHILQAAEVPLTPKEECRRSYA 55
E S L+ A VPL +C
Sbjct: 170 HLDENVSGYSSSLREALVPLVADHKCSSPEV 200
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 194 bits (495), Expect = 3e-58
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 220 HEQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-- 275
H + E ++ + + + NDIAL++L N ++PICLP
Sbjct: 225 HYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDI 284
Query: 276 -LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNY-LNQCQVCTGTKQGGL 333
SGWG + G L L ++P+ ++C +Y Y + +C G + GG
Sbjct: 285 GTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGK 343
Query: 334 DSCQGDSGGPLACPLP-DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
DSC+GDSGG L R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 344 DSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
Score = 164 bits (418), Expect = 5e-47
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L N ++PICLP D+G SGWG + G L
Sbjct: 254 KLNNKVVINSNITPICLPRKEAESFMRTD------------DIGTASGWGLT-QRGFLAR 300
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNY-LNQCQVCTGTKQGGLDSCQGDSGGPLACPLP- 177
L ++P+ ++C +Y Y + +C G + GG DSC+GDSGG L
Sbjct: 301 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE 360
Query: 178 DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
R+++ GI SWG + C YGVYT V Y W+++I+
Sbjct: 361 TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
Score = 36.3 bits (84), Expect = 0.017
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 59
++ G L L ++P+ ++C +Y Y
Sbjct: 292 LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPY 324
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 189 bits (483), Expect = 3e-58
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 221 EQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA----DV 274
E+ +E+IY + + DIAL++L +P F++++ P+CLP+ +
Sbjct: 76 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYK 135
Query: 275 GLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAV--------AGYSNYLN 320
G ++GWG L E G P +LQ +P+ + C+ S + AGY
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEG 195
Query: 321 QCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSC 379
D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 196 ----------KRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFR 245
Query: 380 YSDWVKSIL 388
W++ ++
Sbjct: 246 LKKWIQKVI 254
Score = 164 bits (416), Expect = 3e-48
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 32/170 (18%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTA----DVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+L +P F++++ P+CLP+ + G ++GWG L E + G
Sbjct: 104 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKET---------WTANVGK 154
Query: 116 SLPHILQAAEVPLTPKEECRRSYAV--------AGYSNYLNQCQVCTGTKQGGLDSCQGD 167
P +LQ +P+ + C+ S + AGY D+C+GD
Sbjct: 155 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEG----------KRGDACEGD 204
Query: 168 SGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Score = 35.7 bits (83), Expect = 0.017
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAV--------AGY 59
+ G P +LQ +P+ + C+ S + AGY
Sbjct: 150 ANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 190
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 188 bits (480), Expect = 5e-58
Identities = 54/175 (30%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 220 HEQRRRVERIYT-DFYDKSIYK--NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG- 275
EQ V ++ ++ DIALL L N V LP + +
Sbjct: 68 KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPC 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
I+GWG+ S GG L L+ A +P C S + + + VC G G
Sbjct: 128 YITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGW---WGSTVKTTMVCAG--GGANSG 182
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 388
C GDSGGPL C + +G YY+ G+TS+ GC V+T VS Y W+ I+
Sbjct: 183 CNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 159 bits (405), Expect = 7e-47
Identities = 46/159 (28%), Positives = 64/159 (40%), Gaps = 22/159 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L N V LP + + + I+GWG+ S GG L
Sbjct: 98 RLNTQASLNSAVQLAALPPSNQILPNNN---PCY-----------ITGWGKTSTGGPLSD 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ A +P C S + + + VC G G C GDSGGPL C + +G
Sbjct: 144 SLKQAWLPSVDHATCSSSGW---WGSTVKTTMVCAG--GGANSGCNGDSGGPLNCQV-NG 197
Query: 180 RYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
YY+ G+TS+ GC V+T VS Y W+ I+
Sbjct: 198 SYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 37.9 bits (89), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+TS GG L L+ A +P C S
Sbjct: 134 KTSTGGPLSDSLKQAWLPSVDHATCSSSG 162
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 193 bits (492), Expect = 5e-58
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 221 EQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 279
Q R++ ++ ++ ND+ALL L RP + + ICLP + SG
Sbjct: 209 YQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASG 268
Query: 280 WGRLSEG--GSLPHILQAAEVPLTPKEECRRSY--AVAGYSNYLNQCQVCTGTKQGGLDS 335
WG+ G +IL+ ++P +++C+ G L+Q VC G + G D+
Sbjct: 269 WGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAG-GEQGKDT 327
Query: 336 CQGDSGGPLACPLP--DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
C GD G PL CP P RY GI +WG+GC + GVY V+ + +W+ +
Sbjct: 328 CTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382
Score = 164 bits (417), Expect = 5e-47
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP + + ICLP + SGWG+ G+ +
Sbjct: 236 LLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSR-------------HRYSN 282
Query: 120 ILQAAEVPLTPKEECRRSY--AVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
IL+ ++P +++C+ G L+Q VC G + G D+C GD G PL CP P
Sbjct: 283 ILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAG-GEQGKDTCTGDGGSPLFCPDP 341
Query: 178 --DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
RY GI +WG+GC + GVY V+ + +W+ +
Sbjct: 342 RNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382
Score = 32.5 bits (74), Expect = 0.22
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 26 RTSEG--GSLPHILQAAEVPLTPKEECRRSY 54
+ G +IL+ ++P +++C+
Sbjct: 271 KKEFGSRHRYSNILKKIQLPTVDRDKCQADL 301
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 188 bits (481), Expect = 5e-58
Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
H Q V R++ DIALL+L+ P + V P CLP+P V I
Sbjct: 85 HVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFI 138
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG +L+ A++P+ + C R + + ++C G GG DSCQ
Sbjct: 139 TGWGETQGTFG-AGLLKEAQLPVIENKVCNRYEF---LNGRVQSTELCAGHLAGGTDSCQ 194
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GD+GGPL C +Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 195 GDAGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 162 bits (411), Expect = 1e-47
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 19/157 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P + V P CLP+P +++ + I+GWG
Sbjct: 107 KLSSPAVITDKVIPACLPSPNYV-------------VADRTEC-FITGWGETQGTFG-AG 151
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L+ A++P+ + C R + + ++C G GG DSCQGD+GGPL C
Sbjct: 152 LLKEAQLPVIENKVCNRYEF---LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFE-KD 207
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 208 KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 32.6 bits (75), Expect = 0.18
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
+G +L+ A++P+ + C R + G
Sbjct: 145 QGTFGAGLLKEAQLPVIENKVCNRYEFLNG 174
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 188 bits (479), Expect = 6e-58
Identities = 56/191 (29%), Positives = 78/191 (40%), Gaps = 21/191 (10%)
Query: 207 CYSDWVKSILYAR--------HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEF 257
C S + +S R + + Y ND+A+L+L+
Sbjct: 42 CVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSG--NNNDLAILKLSTSIPSGGN 99
Query: 258 VSPICLPNPGLTVTA-DVGLISGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGY 315
+ L G A ++GWG SEGG S P L VP+ + CR Y
Sbjct: 100 IGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQY----G 155
Query: 316 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYT 375
++ + C G GG DSCQGDSGGP+ L G SWG GCARP++ GVY
Sbjct: 156 TSAITNQMFCAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWGNGCARPNYSGVYA 211
Query: 376 LVSCYSDWVKS 386
V ++ +
Sbjct: 212 SVGALRSFIDT 222
Score = 161 bits (409), Expect = 1e-47
Identities = 47/156 (30%), Positives = 63/156 (40%), Gaps = 23/156 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTA-DVGLISGWGRLSEGADVGLISGWGRLSEGGSLP 118
+L+ + L G A ++GWG SEG G S P
Sbjct: 89 KLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEG--------------GSSTP 134
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
L VP+ + CR Y ++ + C G GG DSCQGDSGGP+
Sbjct: 135 VNLLKVTVPIVSRATCRAQY----GTSAITNQMFCAGVSSGGKDSCQGDSGGPIVD---- 186
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
L G SWG GCARP++ GVY V ++ +
Sbjct: 187 SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDT 222
Score = 36.0 bits (84), Expect = 0.014
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 26 RTSEGG-SLPHILQAAEVPLTPKEECRRSY 54
TSEGG S P L VP+ + CR Y
Sbjct: 125 ATSEGGSSTPVNLLKVTVPIVSRATCRAQY 154
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 188 bits (479), Expect = 8e-58
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 220 HEQRRRVERIYT-DFYDKSIYK--NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG- 275
++ ++ + NDIAL++L+R + + V LP G + +
Sbjct: 68 QVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPC 127
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
ISGWGRL GG LP LQ A +P E C + + + + VC G
Sbjct: 128 YISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDW---WGITVKKTMVCAG--GDTRSG 182
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
C GDSGGPL CP DG + + G+TS+ GC V+T VS + DW+ + ++
Sbjct: 183 CNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN 240
Score = 162 bits (413), Expect = 4e-48
Identities = 50/159 (31%), Positives = 68/159 (42%), Gaps = 21/159 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+R + + V LP G + A ISGWGRL GG LP
Sbjct: 98 KLSRSAQLGDKVQLANLPPAGDILPN-------------EAPC-YISGWGRLYTGGPLPD 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ A +P E C + + + + VC G C GDSGGPL CP DG
Sbjct: 144 KLQQALLPTVDYEHCSQWDW---WGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADG 198
Query: 180 RYYLCGITSW--GVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ + G+TS+ GC V+T VS + DW+ +
Sbjct: 199 SWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237
Score = 37.6 bits (88), Expect = 0.004
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
R GG LP LQ A +P E C +
Sbjct: 134 RLYTGGPLPDKLQQALLPTVDYEHCSQWD 162
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 187 bits (478), Expect = 9e-58
Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+EQ + Y+ + NDI L++L N V+ I LP + LIS
Sbjct: 61 NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQC-LIS 119
Query: 279 GWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG G S P +L+ + P+ C+ +Y + C G +GG DSCQ
Sbjct: 120 GWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY-----PGQITSNMFCAGYLEGGKDSCQ 174
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGP+ C L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 175 GDSGGPVVC-----SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 155 bits (394), Expect = 2e-45
Identities = 51/157 (32%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L N V+ I LP + LISGWG G S P
Sbjct: 89 KLKSAASLNSRVASISLPTSCASAGTQC-LISGWGNTKSS--------------GTSYPD 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L+ + P+ C+ +Y + C G +GG DSCQGDSGGP+ C
Sbjct: 134 VLKCLKAPILSDSSCKSAY-----PGQITSNMFCAGYLEGGKDSCQGDSGGPVVC----- 183
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L GI SWG GCA+ + GVYT V Y W+K +
Sbjct: 184 SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 35.2 bits (82), Expect = 0.022
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
S G S P +L+ + P+ C+ +Y
Sbjct: 125 KSSGTSYPDVLKCLKAPILSDSSCKSAY 152
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 187 bits (477), Expect = 1e-57
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 219 RHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
+ +Q V ++ +D+ L++L RP ++FVS I LPN G T+ +
Sbjct: 66 KCKQVLNVSQLVYGPEG-----SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSV 120
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG +L+ A + + E+C + + LN+ ++C G ++ G C+
Sbjct: 121 YGWGYTGLINY-DGLLRVAHLYIMGNEKCSQHH---RGKVTLNESEICAGAEKIGSGPCE 176
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYASVSAKRV 397
GD GGPL C + G+ G GCA P+ G++ V+ Y+ W+ I+
Sbjct: 177 GDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII-----LTYK 230
Query: 398 NQTSVEGNH 406
S +H
Sbjct: 231 VPQSHHHHH 239
Score = 161 bits (410), Expect = 1e-47
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L RP ++FVS I LPN G T+ + GWG
Sbjct: 89 KLARPAVLDDFVSTIDLPNYGSTIPE-------------KTSC-SVYGWGYTGLINY-DG 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L+ A + + E+C + + LN+ ++C G ++ G C+GD GGPL C
Sbjct: 134 LLRVAHLYIMGNEKCSQHH---RGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQ-HK 189
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ G+ G GCA P+ G++ V+ Y+ W+ I+
Sbjct: 190 MRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII 226
Score = 32.6 bits (75), Expect = 0.19
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSY 54
+ +L+ A + + E+C + +
Sbjct: 127 GLINYDGLLRVAHLYIMGNEKCSQHH 152
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 187 bits (478), Expect = 2e-57
Identities = 61/180 (33%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPF----KFNEFVSPICLPNPGLTVTADV 274
EQ+ VE+ +D Y NDIALL+L + + V +CLP L +
Sbjct: 73 EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWT 132
Query: 275 G-LISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
+SG+G+ L+ A V L P C + + + +C G + G
Sbjct: 133 ECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHL---LNRTVTDNMLCAGDTRSG 189
Query: 333 L------DSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 386
D+CQGDSGGPL C DGR L GI SWG+GC + D GVYT V+ Y DW++
Sbjct: 190 GPQANLHDACQGDSGGPLVCLN-DGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRD 248
Score = 155 bits (394), Expect = 4e-45
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSL-PH 119
+R + + V +CLP L + +SG+G+
Sbjct: 106 SSRCAQESSVVRTVCLPPADLQLPDW--------------TECELSGYGKHEALSPFYSE 151
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL------DSCQGDSGGPLA 173
L+ A V L P C + + + +C G + G D+CQGDSGGPL
Sbjct: 152 RLKEAHVRLYPSSRCTSQHL---LNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLV 208
Query: 174 CPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
C DGR L GI SWG+GC + D GVYT V+ Y DW++
Sbjct: 209 CLN-DGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRD 248
Score = 34.2 bits (79), Expect = 0.055
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 26 RTSEGGSL-PHILQAAEVPLTPKEECRRSYAVAG 58
+ L+ A V L P C + +
Sbjct: 141 KHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNR 174
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 192 bits (489), Expect = 2e-57
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 10/175 (5%)
Query: 220 HEQRRRVERIYT----DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA-DV 274
+ R+ + ++ DIALLEL + PICLP+ +
Sbjct: 225 KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLM 284
Query: 275 GLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
G +SG+G + E H L+ +P+ + C + +Q C G D
Sbjct: 285 GYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 342
Query: 335 SCQGDSGGPLACPLPD-GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+CQGDSGG A P+ R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 343 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395
Score = 164 bits (417), Expect = 6e-47
Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL + PICLP+ +G +SG+G + E H
Sbjct: 256 ELENSVTLGPNLLPICLPDNDTFYDLG--------------LMGYVSGFGVMEEKI--AH 299
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD- 178
L+ +P+ + C + +Q C G D+CQGDSGG A P+
Sbjct: 300 DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNT 359
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
R+ GI SWG+GC+R YG YT V Y DW+K +
Sbjct: 360 DRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395
Score = 32.9 bits (75), Expect = 0.20
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 31 GSLPHILQAAEVPLTPKEECRRSYAVAGY 59
+ H L+ +P+ + C
Sbjct: 295 EKIAHDLRFVRLPVANPQACENWLRGKNR 323
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 187 bits (476), Expect = 2e-57
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
QR V ++ + + LL+L R N+ V+ ICLP V I+
Sbjct: 68 SLQRVPVAKMVCGPSG-----SQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIA 122
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG G+ +L A + + +EC + + + ++CT + +C+G
Sbjct: 123 GWGETKGTGN-DTVLNVALLNVISNQECNIKH-----RGRVRESEMCTEGLLAPVGACEG 176
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
D GGPLAC + L GI CAR + V+T VS + DW+ ++
Sbjct: 177 DYGGPLACFT-HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225
Score = 161 bits (409), Expect = 2e-47
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R N+ V+ ICLP V G I+GWG G+
Sbjct: 90 KLERSVTLNQRVALICLPPEWYVVPP-------------GTKC-EIAGWGETKGTGN-DT 134
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L A + + +EC + + + ++CT + +C+GD GGPLAC
Sbjct: 135 VLNVALLNVISNQECNIKH-----RGRVRESEMCTEGLLAPVGACEGDYGGPLACFT-HN 188
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ L GI CAR + V+T VS + DW+ ++
Sbjct: 189 SWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225
Score = 33.3 bits (77), Expect = 0.10
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
T G+ +L A + + +EC +
Sbjct: 126 ETKGTGN-DTVLNVALLNVISNQECNIKH 153
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 188 bits (480), Expect = 3e-57
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 221 EQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA----DV 274
E+ +E+IY + + DIAL++L +P F++++ P+CLP+ +
Sbjct: 106 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYK 165
Query: 275 GLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAV--------AGYSNYLN 320
G ++GWG L E G P +LQ +P+ + C+ S + AGY
Sbjct: 166 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEG 225
Query: 321 QCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSC 379
D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 226 ----------KRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFR 275
Query: 380 YSDWVKSIL 388
W++ ++
Sbjct: 276 LKKWIQKVI 284
Score = 163 bits (414), Expect = 1e-47
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 32/170 (18%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTA----DVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+L +P F++++ P+CLP+ + G ++GWG L E + G
Sbjct: 134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKET---------WTANVGK 184
Query: 116 SLPHILQAAEVPLTPKEECRRSYAV--------AGYSNYLNQCQVCTGTKQGGLDSCQGD 167
P +LQ +P+ + C+ S + AGY D+C+GD
Sbjct: 185 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEG----------KRGDACEGD 234
Query: 168 SGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 235 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284
Score = 35.4 bits (82), Expect = 0.026
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAV--------AGY 59
+ G P +LQ +P+ + C+ S + AGY
Sbjct: 179 TANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGY 220
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 187 bits (476), Expect = 3e-57
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
Q+ ++ +++ Y+ NDI LL+L+ F++ VS +CLP+ A +
Sbjct: 79 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVT 138
Query: 278 SGWGRLS-EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
+GWG + P LQ A +PL C++ + + +C G G+ SC
Sbjct: 139 TGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYW-----GTKIKDAMICAG--ASGVSSC 191
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
GDSGGPL C +G + L GI SWG GVY V+ +WV+ L A+
Sbjct: 192 MGDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 245
Score = 155 bits (394), Expect = 3e-45
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRLSEGADVGLISGWGRLSEGGSLP 118
+L+ F++ VS +CLP+ A + +GWG + P
Sbjct: 107 KLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY--------------TNANTP 152
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
LQ A +PL C++ + + +C G G+ SC GDSGGPL C +
Sbjct: 153 DRLQQASLPLLSNTNCKKYW-----GTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK-N 204
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYA 218
G + L GI SWG GVY V+ +WV+ L A
Sbjct: 205 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAA 244
Score = 34.1 bits (79), Expect = 0.056
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSY 54
+ P LQ A +PL C++ +
Sbjct: 146 YTNANTPDRLQQASLPLLSNTNCKKYW 172
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 186 bits (474), Expect = 3e-57
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 214 SILYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA 272
+ + VE YD + +ND+AL+ LT P KFN+ V PI L + +
Sbjct: 58 TNYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLES 117
Query: 273 DVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
+ ++GWG GG+ P+ LQ E+ + P+++C R + +CT TK G
Sbjct: 118 NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQ------WRVIDSHICTLTK-RG 170
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+C GDSGGPL +G GI S+G CA VYT VS + W+ + L
Sbjct: 171 EGACHGDSGGPLVA---NG--AQIGIVSFGSPCALG-EPDVYTRVSSFVSWINANL 220
Score = 151 bits (383), Expect = 8e-44
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
LT P KFN+ V PI L + E ++GWG GG+ P+
Sbjct: 92 HLTNPIKFNDLVQPIKLSTNDEDL--------------ESNPC-TLTGWGSTRLGGNTPN 136
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ E+ + P+++C R + +CT TK G +C GDSGGPL +G
Sbjct: 137 ALQEIELIVHPQKQCERDQ------WRVIDSHICTLTK-RGEGACHGDSGGPLVA---NG 186
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G CA VYT VS + W+ + L
Sbjct: 187 --AQIGIVSFGSPCALG-EPDVYTRVSSFVSWINANL 220
Score = 41.8 bits (99), Expect = 2e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
T GG+ P+ LQ E+ + P+++C R
Sbjct: 127 STRLGGNTPNALQEIELIVHPQKQCERDQ 155
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 186 bits (475), Expect = 4e-57
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 220 HEQRRRVERIYT--DFYDKSI-YKNDIALLELTRPF----KFNEFVSPICLPNPGLTVTA 272
E + VE + D+ ++ + NDIALL++ + + + I LP+
Sbjct: 72 GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQF 131
Query: 273 DVG-LISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQ 330
I+G+G+ + L P L+ V L EC++ + Y + + +C Q
Sbjct: 132 GTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQ 188
Query: 331 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
DSCQGDSGGPL C GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 189 WKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 157 bits (400), Expect = 5e-46
Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 62 TRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSL-PHI 120
R + + + I LP+ G I+G+G+ + L P
Sbjct: 108 GRCAQPSRTIQTISLPSMYNDPQF-------------GTSC-EITGFGKENSTDYLYPEQ 153
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
L+ V L EC++ + Y + + +C Q DSCQGDSGGPL C GR
Sbjct: 154 LKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGR 209
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
L GI SWG GCA D GVYT VS + W++S
Sbjct: 210 MTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 33.8 bits (78), Expect = 0.081
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 26 RTSEGGSL-PHILQAAEVPLTPKEECRRSYAVAG 58
+ + L P L+ V L EC++ +
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 186 bits (475), Expect = 1e-56
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 220 HEQRRRVERIYT--DFYDKSI-YKNDIALLELTRPF----KFNEFVSPICLPNPGLTVTA 272
E + VE + D+ ++ + NDIALL++ + + + ICLP+
Sbjct: 95 GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQF 154
Query: 273 DVG-LISGWGRLSEGGSL-PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQ 330
I+G+G+ + L P L+ V L EC++ + Y + + +C Q
Sbjct: 155 GTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQ 211
Query: 331 GGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
DSCQGDSGGPL C GR L GI SWG GCA D GVYT VS + W++S
Sbjct: 212 WKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 267
Score = 157 bits (399), Expect = 1e-45
Identities = 51/154 (33%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 63 RPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSL-PHIL 121
R + + + ICLP+ G I+G+G+ + L P L
Sbjct: 132 RCAQPSRTIQTICLPSMYND-------------PQFGTSC-EITGFGKENSTDYLYPEQL 177
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
+ V L EC++ + Y + + +C Q DSCQGDSGGPL C GR
Sbjct: 178 KMTVVKLISHRECQQPHY---YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRM 233
Query: 182 YLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 215
L GI SWG GCA D GVYT VS + W++S
Sbjct: 234 TLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 267
Score = 33.4 bits (77), Expect = 0.10
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 26 RTSEGGSL-PHILQAAEVPLTPKEECRRSYAVAG 58
+ + L P L+ V L EC++ +
Sbjct: 165 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 198
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 184 bits (469), Expect = 2e-56
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 13/172 (7%)
Query: 219 RHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
+Q V+R Y+ + NDI LL+L R K V P+ LP+ V
Sbjct: 64 PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCS 123
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
++GWG+ + G H LQ ++ + +C Y + ++C G + S
Sbjct: 124 VAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL----RHYYDSTIELCVGDPEIKKTSF 179
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+GDSGGPL C GI S+G P T VS + W+K +
Sbjct: 180 KGDSGGPLVC-----NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
Score = 153 bits (388), Expect = 2e-44
Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 25/156 (16%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L R K V P+ LP+ V ++GWG+ + G H
Sbjct: 94 LERKAKRTRAVQPLRLPSNKAQVKPG--------------QTCSVAGWGQTAPLGKHSHT 139
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
LQ ++ + +C Y + ++C G + S +GDSGGPL C
Sbjct: 140 LQEVKMTVQEDRKCESDL----RHYYDSTIELCVGDPEIKKTSFKGDSGGPLVC-----N 190
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G P T VS + W+K +
Sbjct: 191 KVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
Score = 37.9 bits (89), Expect = 0.003
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+T+ G H LQ ++ + +C
Sbjct: 129 QTAPLGKHSHTLQEVKMTVQEDRKCESDL 157
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 183 bits (467), Expect = 4e-56
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 219 RHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
+Q V++ + YD + + D+ LL+LT K N++V+ + LP G V
Sbjct: 62 PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQ 121
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
++GWGR S L+ E+ + ++ C ++ + VC G+ +GG DSC
Sbjct: 122 VAGWGRTHNSASWSDTLREVEITIIDRKVCNDRN-HYNFNPVIGMNMVCAGSLRGGRDSC 180
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGV--GCARPDFYGVYTLVSC-YSDWVKSILYASV 392
GDSG PL C G+TS+G+ C P GVY L+S + +W+ + +V
Sbjct: 181 NGDSGSPLLC-----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV 234
Score = 148 bits (377), Expect = 7e-43
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+LT K N++V+ + LP G V + ++GWGR S
Sbjct: 91 QLTEKAKINKYVTILHLPKKGDDVKPG--------------TMCQVAGWGRTHNSASWSD 136
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ E+ + ++ C ++ + VC G+ +GG DSC GDSG PL C
Sbjct: 137 TLREVEITIIDRKVCNDRN-HYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC----- 190
Query: 180 RYYLCGITSWGV--GCARPDFYGVYTLVSC-YSDWVKSIL 216
G+TS+G+ C P GVY L+S + +W+ +
Sbjct: 191 EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
Score = 36.4 bits (85), Expect = 0.010
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
RT S L+ E+ + ++ C
Sbjct: 127 RTHNSASWSDTLREVEITIIDRKVCNDRN 155
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 182 bits (465), Expect = 9e-56
Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 17/193 (8%)
Query: 207 CYSDWVKSILYAR--------HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNE-F 257
C S + ++IY Y +N+ A++E P K ++
Sbjct: 42 CVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKT 101
Query: 258 VSPICLPNPGLTVTA-DVGLISGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGY 315
I LP+ L+SGWG + L A + ++ C Y
Sbjct: 102 TKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEA 161
Query: 316 SNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYT 375
Y+ C G + GD+G P L G+ S+ +F V+
Sbjct: 162 DKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ-----NGTLVGVASYISSMP-SEFPSVFL 215
Query: 376 LVSCYSDWVKSIL 388
V Y +K I+
Sbjct: 216 RVGYYVLDIKDII 228
Score = 153 bits (390), Expect = 1e-44
Identities = 31/159 (19%), Positives = 48/159 (30%), Gaps = 22/159 (13%)
Query: 60 ELTRPFKFNE-FVSPICLPNPGLTVTA-DVGLISGWGRLSEGADVGLISGWGRLSEGGSL 117
E P K ++ I LP+ L+SGWG +
Sbjct: 90 ETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFK--------------SLEY 135
Query: 118 PHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP 177
L A + ++ C Y Y+ C G + GD+G P
Sbjct: 136 SGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ--- 192
Query: 178 DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ S+ +F V+ V Y +K I+
Sbjct: 193 --NGTLVGVASYISSMP-SEFPSVFLRVGYYVLDIKDII 228
Score = 37.6 bits (88), Expect = 0.004
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYE 60
+ L A + ++ C Y +
Sbjct: 129 NFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEAD 162
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 180 bits (459), Expect = 5e-55
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 216 LYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADV 274
L R QR + + + Y + ND+ L++L + + V + LP+
Sbjct: 56 LGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPP-GTT 114
Query: 275 GLISGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGL 333
+SGWG + + P L +V L ++C + Y + L +C G
Sbjct: 115 CTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSKK 169
Query: 334 DSCQGDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
++C GDSGGPL C R L G+ SWG C +P+ GVYT V ++ W+ +
Sbjct: 170 NACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 149 bits (378), Expect = 4e-43
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 26/158 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L + + V + LP+ +SGWG + + P
Sbjct: 88 KLNSQARLSSMVKKVRLPSRCEPP-GTTCTVSGWGTTTSP--------------DVTFPS 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L +V L ++C + Y + L +C G ++C GDSGGPL C
Sbjct: 133 DLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSKKNACNGDSGGPLVC----- 182
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
R L G+ SWG C +P+ GVYT V ++ W+ +
Sbjct: 183 RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 34.8 bits (81), Expect = 0.033
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
TS + P L +V L ++C + Y
Sbjct: 124 TSPDVTFPSDLMCVDVKLISPQDCTKVY 151
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 180 bits (458), Expect = 9e-55
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 220 HEQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLI 277
EQ R + + + + + DI L++L +E + P+ LP+ +V V I
Sbjct: 62 DEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV-GSVCHI 120
Query: 278 SGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
GWG ++ + P + A + L C+ Y +C G +GG D+C
Sbjct: 121 MGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY----PELLTEYRTLCAGILEGGKDTC 176
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C GI S+G C + GVYT V Y+ W++SI+
Sbjct: 177 GGDSGGPLIC-----NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
Score = 148 bits (377), Expect = 8e-43
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L +E + P+ LP+ +V V I GWG ++ + P
Sbjct: 91 KLDSRVSNSEHIVPLSLPSSPPSV-GSVCHIMGWGSITPI--------------KVTYPD 135
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ A + L C+ Y +C G +GG D+C GDSGGPL C
Sbjct: 136 VPYCAYINLLDDAVCQAGY----PELLTEYRTLCAGILEGGKDTCGGDSGGPLIC----- 186
Query: 180 RYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G C + GVYT V Y+ W++SI+
Sbjct: 187 NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224
Score = 35.2 bits (82), Expect = 0.025
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
T + P + A + L C+ Y
Sbjct: 127 TPIKVTYPDVPYCAYINLLDDAVCQAGY 154
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 179 bits (457), Expect = 1e-54
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 15/176 (8%)
Query: 216 LYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEF-VSPICLPNPGLTVTAD 273
L+ + FY + +NDIA+LEL+RP K + P LP+
Sbjct: 62 LWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTG 121
Query: 274 -VGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
L+SG+G H L++A++ + +ECR Y +L+ C + G
Sbjct: 122 SDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKY----GPIFLSLQVFCAQ--KVG 175
Query: 333 LDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ GD+G P + L G+ ++ V+T V Y W++ I+
Sbjct: 176 VSLESGDAGDPTVQ-----QDTLVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDII 225
Score = 147 bits (374), Expect = 2e-42
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEF-VSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLP 118
EL+RP K + P LP+ L+SG+G
Sbjct: 94 ELSRPLKLDGLKSKPAKLPDIEFRPKTG--------------SDVLVSGYGDGQTMDPKD 139
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
H L++A++ + +ECR Y +L+ C + G+ GD+G P
Sbjct: 140 HDLKSAQLTVVDLDECRTKY----GPIFLSLQVFCAQ--KVGVSLESGDAGDPTVQ---- 189
Query: 179 GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+ L G+ ++ V+T V Y W++ I+
Sbjct: 190 -QDTLVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDII 225
Score = 41.4 bits (98), Expect = 2e-04
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
H L++A++ + +ECR Y
Sbjct: 131 DGQTMDPKDHDLKSAQLTVVDLDECRTKY 159
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 179 bits (457), Expect = 2e-54
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 9/172 (5%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+Q +++ NDI L++L K N+ V + + + + ++
Sbjct: 69 SKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVT 128
Query: 279 GWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG L+ V + ++ C G VC G +G DSC+
Sbjct: 129 GWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKD-MVCAGDAKGQKDSCK 187
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSC-YSDWVKSIL 388
GD+GGPL C + I S G C G+YTL++ Y W+KS L
Sbjct: 188 GDAGGPLIC-----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 148 bits (375), Expect = 2e-42
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 21/158 (13%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L K N+ V + + + + ++GWG
Sbjct: 97 KLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPD--------------SLRPSD 142
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ V + ++ C G VC G +G DSC+GD+GGPL C
Sbjct: 143 TLREVTVTVLSRKLCNSQSYYNGDPFITKD-MVCAGDAKGQKDSCKGDAGGPLIC----- 196
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSC-YSDWVKSIL 216
+ I S G C G+YTL++ Y W+KS L
Sbjct: 197 KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 30.6 bits (70), Expect = 0.65
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
+ L+ V + ++ C G
Sbjct: 134 DPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 178 bits (454), Expect = 3e-54
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 13/172 (7%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLI 277
++ V R +D+ LL+L+ V P+ V + +
Sbjct: 66 SKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDV 125
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
+GWG ++ G P LQ +P+ + C R + + + +C DSC+
Sbjct: 126 AGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH---HDGAITERLMCAE--SNRRDSCK 180
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
GD+GGPL C L G+ + G C G+YT V+ Y+ W+ S+L
Sbjct: 181 GDAGGPLVC-----GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 148 bits (376), Expect = 1e-42
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ V P+ V + ++GWG ++ G P
Sbjct: 94 QLSEKATLGPAVRPLPWQRVDRDVAPG--------------TLCDVAGWGIVNHAGRRPD 139
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ +P+ + C R + + + +C DSC+GD+GGPL C
Sbjct: 140 SLQHVLLPVLDRATCNRRTH---HDGAITERLMCAE--SNRRDSCKGDAGGPLVC----- 189
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
L G+ + G C G+YT V+ Y+ W+ S+L
Sbjct: 190 GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 36.4 bits (85), Expect = 0.010
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ G P LQ +P+ + C R
Sbjct: 130 IVNHAGRRPDSLQHVLLPVLDRATCNRRT 158
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 178 bits (455), Expect = 3e-54
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 222 QRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGW 280
R E+ + + +++ DI L+ L P K ++ ++P LP+ +V V I GW
Sbjct: 67 TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSV-GSVCRIMGW 125
Query: 281 GRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGD 339
GR+S G+ P + + L E CR Y + +C G +GG D+C+GD
Sbjct: 126 GRISPTEGTYPDVPHCVNINLLEYEMCRAPY--PEFELPATSRTLCAGILEGGKDTCKGD 183
Query: 340 SGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
SGGPL C GI SWG CA+P YT V + DW+++I+
Sbjct: 184 SGGPLIC-----NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
Score = 150 bits (381), Expect = 2e-43
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L P K ++ ++P LP+ +V V I GWGR+S G+ P
Sbjct: 93 RLDSPVKNSKHIAPFSLPSSPPSV-GSVCRIMGWGRISPT--------------EGTYPD 137
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ + L E CR Y + +C G +GG D+C+GDSGGPL C
Sbjct: 138 VPHCVNINLLEYEMCRAPYP--EFELPATSRTLCAGILEGGKDTCKGDSGGPLIC----- 190
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
GI SWG CA+P YT V + DW+++I+
Sbjct: 191 NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
Score = 36.8 bits (86), Expect = 0.008
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYELT 62
+ G+ P + + L E CR Y T
Sbjct: 129 SPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPAT 164
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 178 bits (453), Expect = 4e-54
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 15/172 (8%)
Query: 219 RHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
+Q+ +VE+ + Y+ +DI LL+L + + V+ + LP+P +
Sbjct: 65 STQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCW 124
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
+GWG+ + L+ E+ + ++ C Y Y + QVC G+ +
Sbjct: 125 AAGWGKTGVRDPTSYTLREVELRIMDEKACVD------YRYYEYKFQVCVGSPTTLRAAF 178
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C GI S+G A+P ++T VS Y W+ +++
Sbjct: 179 MGDSGGPLLC-----AGVAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVI 223
Score = 147 bits (373), Expect = 3e-42
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 27/156 (17%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L + + V+ + LP+P + + +GWG+ +
Sbjct: 95 LEKKVELTPAVNVVPLPSPSDFIHPG--------------AMCWAAGWGKTGVRDPTSYT 140
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
L+ E+ + ++ C Y Y + QVC G+ + GDSGGPL C
Sbjct: 141 LREVELRIMDEKACVD------YRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLC-----A 189
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G A+P ++T VS Y W+ +++
Sbjct: 190 GVAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVI 223
Score = 35.2 bits (82), Expect = 0.021
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+T + L+ E+ + ++ C
Sbjct: 130 KTGVRDPTSYTLREVELRIMDEKACVDYR 158
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 177 bits (452), Expect = 5e-54
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 21/172 (12%)
Query: 219 RHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD-VGLI 277
Q V+RI+ + YD NDI +L+L N V LP G + L
Sbjct: 65 PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLA 124
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG L + +LQ V + CRRS VCT + C
Sbjct: 125 MGWGLLGRNRGIASVLQELNVTVVT-SLCRRS-------------NVCTLVRGRQAGVCF 170
Query: 338 GDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSG PL C + GI S+ GCA + + V+ + +W+ SI+
Sbjct: 171 GDSGSPLVC-----NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 144 bits (365), Expect = 3e-41
Identities = 39/158 (24%), Positives = 54/158 (34%), Gaps = 34/158 (21%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L N V LP G + L GWG L +
Sbjct: 93 QLNGSATINANVQVAQLPAQGRRLGNG--------------VQCLAMGWGLLGRNRGIAS 138
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ V + CRRS VCT + C GDSG PL C
Sbjct: 139 VLQELNVTVVT-SLCRRS-------------NVCTLVRGRQAGVCFGDSGSPLVC----- 179
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S+ GCA + + V+ + +W+ SI+
Sbjct: 180 NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217
Score = 32.1 bits (74), Expect = 0.19
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGY 59
+ +LQ V + CRRS
Sbjct: 129 LLGRNRGIASVLQELNVTVVT-SLCRRSNVCTLV 161
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 178 bits (453), Expect = 5e-54
Identities = 54/173 (31%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 219 RHEQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG- 275
R +Q V R D Y+ NDI LL+LTR + VSPI LP V +
Sbjct: 64 RTQQVIPVRRPIPHPD-YNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMC 122
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
++GWGRL LQ ++ + +E+C + NY+ Q+C G +S
Sbjct: 123 SVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF-----KNYIPFTQICAGDPSKRKNS 177
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C GI S+G VYT +S + W+ S +
Sbjct: 178 FSGDSGGPLVC-----NGVAQGIVSYGRNDGTT--PDVYTRISSFLSWIHSTM 223
Score = 148 bits (376), Expect = 1e-42
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 27/161 (16%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
LTR + VSPI LP V + ++GWGRL
Sbjct: 94 LTRKADITDKVSPINLPRSLAEVKPG--------------MMCSVAGWGRLGVNMPSTDK 139
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
LQ ++ + +E+C + NY+ Q+C G +S GDSGGPL C
Sbjct: 140 LQEVDLEVQSEEKCIARF-----KNYIPFTQICAGDPSKRKNSFSGDSGGPLVC-----N 189
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHE 221
GI S+G VYT +S + W+ S + R++
Sbjct: 190 GVAQGIVSYGRNDGTT--PDVYTRISSFLSWIHSTM-RRYK 227
Score = 37.1 bits (87), Expect = 0.005
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
R LQ ++ + +E+C +
Sbjct: 129 RLGVNMPSTDKLQEVDLEVQSEEKCIARF 157
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 179 bits (456), Expect = 6e-54
Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 208 YSDWVKSILYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNP 266
+ ++ ++ ++ YD +ND++LLEL P + P+C P
Sbjct: 102 ITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEK 161
Query: 267 GLT----VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC 322
+ GL+SGW R G L + L V L EEC + V +
Sbjct: 162 DFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTR----- 214
Query: 323 QVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
C + + G + G ++L G+ + T VS YS
Sbjct: 215 TYCER---SSVAAMHWMDGSVVTRE-HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSL 269
Query: 383 WVKSILYA 390
W K I+ A
Sbjct: 270 WFKQIMNA 277
Score = 150 bits (380), Expect = 9e-43
Identities = 39/163 (23%), Positives = 54/163 (33%), Gaps = 23/163 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL P + P+C P A+ LI GL+SGW R G L +
Sbjct: 142 ELEWPIQCPGAGLPVCTPEKDF---AEHLLIPR--------TRGLLSGWAR--NGTDLGN 188
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L V L EEC + V + C + + G + G
Sbjct: 189 SLTTRPVTLVEGEECGQVLNVTVTTR-----TYCER---SSVAAMHWMDGSVVTRE-HRG 239
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQ 222
++L G+ + T VS YS W K I+ A H
Sbjct: 240 SWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMNAHHHH 281
Score = 35.1 bits (81), Expect = 0.028
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSY 54
G L + L V L EEC +
Sbjct: 182 NGTDLGNSLTTRPVTLVEGEECGQVL 207
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 177 bits (451), Expect = 8e-54
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 219 RHEQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG- 275
+Q V + D Y+ NDI LL+L R K V P+ LP V
Sbjct: 65 ETQQIIPVAKAIPHPD-YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDEC 123
Query: 276 LISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDS 335
++GWG+++ G P L ++ + + C + S+Y ++C G + S
Sbjct: 124 YVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF----QSSYNRANEICVGDSKIKGAS 179
Query: 336 CQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+ DSGGPL C + GI S+G V+T V + W+K +
Sbjct: 180 FEEDSGGPLVC-----KRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTM 225
Score = 146 bits (372), Expect = 3e-42
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 25/156 (16%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L R K V P+ LP V D ++GWG+++ G P
Sbjct: 95 LVRNAKRTRAVRPLNLPRRNAHVKPG--------------DECYVAGWGKVTPDGEFPKT 140
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
L ++ + + C + S+Y ++C G + S + DSGGPL C +
Sbjct: 141 LHEVKLTVQKDQVCESQF----QSSYNRANEICVGDSKIKGASFEEDSGGPLVC-----K 191
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G V+T V + W+K +
Sbjct: 192 RAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTM 225
Score = 38.3 bits (90), Expect = 0.002
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ + G P L ++ + + C +
Sbjct: 130 KVTPDGEFPKTLHEVKLTVQKDQVCESQF 158
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 177 bits (451), Expect = 9e-54
Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+++ V R YD + + DI LL L RP K +E + P+ L I
Sbjct: 62 SQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAN-TTSCHIL 120
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG+ ++G P +Q A + L +EEC +Y + Q +C G ++ G DSCQG
Sbjct: 121 GWGKTADG-DFPDTIQCAYIHLVSREECEHAY-----PGQITQNMLCAGDEKYGKDSCQG 174
Query: 339 DSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSI 387
DSGGPL C +L G+ SWG + C + GVYT V Y++W++
Sbjct: 175 DSGGPLVC-----GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219
Score = 145 bits (368), Expect = 2e-41
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP K +E + P+ L + I GWG+ ++G P
Sbjct: 90 RLARPAKLSELIQPLPLER---------------DCSANT-TSCHILGWGKTADG-DFPD 132
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+Q A + L +EEC +Y + Q +C G ++ G DSCQGDSGGPL C
Sbjct: 133 TIQCAYIHLVSREECEHAY-----PGQITQNMLCAGDEKYGKDSCQGDSGGPLVC----- 182
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYAR 219
+L G+ SWG + C + GVYT V Y++W++ + A+
Sbjct: 183 GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 223
Score = 33.3 bits (77), Expect = 0.087
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ G P +Q A + L +EEC +Y
Sbjct: 124 KTADGDFPDTIQCAYIHLVSREECEHAY 151
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 176 bits (449), Expect = 2e-53
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 219 RHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
Q+ V + + Y+ S +DI LL+L V + P+ V
Sbjct: 65 DTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCR 124
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
++GWGR LQ ++ L + C + ++ + Q+C G + +
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH------FRDFDHNLQLCVGNPRKTKSAF 178
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+GDSGGPL C GI S+G A+P V+T +S Y W+ IL
Sbjct: 179 KGDSGGPLLC-----AGVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQIL 223
Score = 144 bits (366), Expect = 3e-41
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 27/156 (17%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L V + P+ V + ++GWGR
Sbjct: 95 LKEKASLTLAVGTLPFPSQFNFVPPG--------------RMCRVAGWGRTGVLKPGSDT 140
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
LQ ++ L + C + ++ + Q+C G + + +GDSGGPL C
Sbjct: 141 LQEVKLRLMDPQACSH------FRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLC-----A 189
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G A+P V+T +S Y W+ IL
Sbjct: 190 GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQIL 223
Score = 34.0 bits (79), Expect = 0.055
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
RT LQ ++ L + C
Sbjct: 130 RTGVLKPGSDTLQEVKLRLMDPQACSHFR 158
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 182 bits (463), Expect = 2e-53
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 221 EQRRRVERIYT--DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTA----DV 274
E+ +E+IY + + DIAL++L +P F++++ P+CLP+ +
Sbjct: 241 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYK 300
Query: 275 GLISGWGRLSE------GGSLPHILQAAEVPLTPKEECRRSYAV--------AGYSNYLN 320
G ++GWG L E G P +LQ +P+ + C+ S + AGY
Sbjct: 301 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEG 360
Query: 321 QCQVCTGTKQGGLDSCQGDSGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSC 379
D+C+GDSGGP P + R+Y GI SWG GC R YG YT V
Sbjct: 361 ----------KRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFR 410
Query: 380 YSDWVKSIL 388
W++ ++
Sbjct: 411 LKKWIQKVI 419
Score = 157 bits (398), Expect = 5e-44
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 32/170 (18%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTA----DVGLISGWGRLSEGADVGLISGWGRLSEGG 115
+L +P F++++ P+CLP+ + G ++GWG L E + G
Sbjct: 269 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKET---------WTANVGK 319
Query: 116 SLPHILQAAEVPLTPKEECRRSYAV--------AGYSNYLNQCQVCTGTKQGGLDSCQGD 167
P +LQ +P+ + C+ S + AGY D+C+GD
Sbjct: 320 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEG----------KRGDACEGD 369
Query: 168 SGGPLACPLP-DGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
SGGP P + R+Y GI SWG GC R YG YT V W++ ++
Sbjct: 370 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 419
Score = 34.8 bits (80), Expect = 0.050
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ G P +LQ +P+ + C+ S
Sbjct: 314 TANVGKGQPSVLQVVNLPIVERPVCKDST 342
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 178 bits (454), Expect = 3e-53
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 17/186 (9%)
Query: 208 YSDWVKSILYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNP 266
+ ++ ++ ++ YD +ND++LLEL P + P+C P
Sbjct: 143 ITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEK 202
Query: 267 GLT----VTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC 322
+ GL+SGW R G L + L V L EEC + V +
Sbjct: 203 DFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTR----- 255
Query: 323 QVCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
C + + G + G ++L G+ + T VS YS
Sbjct: 256 TYCER---SSVAAMHWMDGSVVTRE-HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSL 310
Query: 383 WVKSIL 388
W K I+
Sbjct: 311 WFKQIM 316
Score = 147 bits (373), Expect = 3e-41
Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 23/157 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
EL P + P+C P A+ LI GL+SGW R G L +
Sbjct: 183 ELEWPIQCPGAGLPVCTPEKDF---AEHLLIPR--------TRGLLSGWAR--NGTDLGN 229
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L V L EEC + V + C + + G + G
Sbjct: 230 SLTTRPVTLVEGEECGQVLNVTVTTR-----TYCER---SSVAAMHWMDGSVVTRE-HRG 280
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
++L G+ + T VS YS W K I+
Sbjct: 281 SWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 316
Score = 35.1 bits (81), Expect = 0.032
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 28 SEGGSLPHILQAAEVPLTPKEECRRSY 54
G L + L V L EEC +
Sbjct: 222 RNGTDLGNSLTTRPVTLVEGEECGQVL 248
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 174 bits (444), Expect = 7e-53
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 21/172 (12%)
Query: 219 RHEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
+Q V +++ + YD NDI L++L+ P + V+ + LP V L
Sbjct: 68 PTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLA 127
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWGR+ +LQ V + + + +CT + C
Sbjct: 128 MGWGRVGAHDPPAQVLQELNVTV--------------VTFFCRPHNICTFVPRRKAGICF 173
Query: 338 GDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C + GI S+ GCA F +T V+ Y DW++S L
Sbjct: 174 GDSGGPLIC-----DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
Score = 140 bits (355), Expect = 1e-39
Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 34/157 (21%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L+ P + V+ + LP V L GWGR+ +
Sbjct: 97 LSSPANLSASVATVQLPQQDQPVPHG--------------TQCLAMGWGRVGAHDPPAQV 142
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
LQ V + + + +CT + C GDSGGPL C
Sbjct: 143 LQELNVTV--------------VTFFCRPHNICTFVPRRKAGICFGDSGGPLIC-----D 183
Query: 181 YYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S+ GCA F +T V+ Y DW++S L
Sbjct: 184 GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
Score = 28.3 bits (64), Expect = 3.8
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRS 53
R +LQ V + CR
Sbjct: 132 RVGAHDPPAQVLQELNVTVVT-FFCRPH 158
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 174 bits (443), Expect = 1e-52
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 219 RHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
+Q R Y++ +NDI LL+L+R + N V+P+ LP +
Sbjct: 64 NTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCT 123
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
++GWGR+S L+ ++ + +C R + +Y + Q+C G ++ +
Sbjct: 124 VAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIF-----GSYDPRRQICVGDRRERKAAF 177
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 388
+GDSGGPL C GI S+G P V+T VS + W+++ +
Sbjct: 178 KGDSGGPLLC-----NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 142 bits (361), Expect = 1e-40
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+R + N V+P+ LP + + ++GWGR+S
Sbjct: 93 QLSRRVRRNRNVNPVALPRAQEGLRPG--------------TLCTVAGWGRVSMRRG-TD 137
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L+ ++ + +C R + +Y + Q+C G ++ + +GDSGGPL C
Sbjct: 138 TLREVQLRVQRDRQCLRIF-----GSYDPRRQICVGDRRERKAAFKGDSGGPLLC----- 187
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
GI S+G P V+T VS + W+++ +
Sbjct: 188 NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 31.7 bits (73), Expect = 0.33
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
R S L+ ++ + +C R +
Sbjct: 129 RVSMRRG-TDTLREVQLRVQRDRQCLRIF 156
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 174 bits (443), Expect = 1e-52
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 221 EQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 279
+R E+ + + + +I+ DI L+ L RP + + ++P+ LP+ +V V I G
Sbjct: 63 LRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSV-GSVCRIMG 121
Query: 280 WGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
WG ++ +LP + A + + C+ +Y L +C G +GG D+C+G
Sbjct: 122 WGTITSPNATLPDVPHCANINILDYAVCQAAY------KGLAATTLCAGILEGGKDTCKG 175
Query: 339 DSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSILYASVSA 394
DSGGPL C +G+ GI S G CA+P G+YT V Y+DW++SI+ + A
Sbjct: 176 DSGGPLIC---NGQ--FQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTDA 227
Score = 144 bits (367), Expect = 2e-41
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP + + ++P+ LP+ +V V I GWG ++ S +LP
Sbjct: 90 RLNRPVRNSAHIAPLSLPSNPPSV-GSVCRIMGWGTIT--------------SPNATLPD 134
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ A + + C+ +Y L +C G +GG D+C+GDSGGPL C +G
Sbjct: 135 VPHCANINILDYAVCQAAY------KGLAATTLCAGILEGGKDTCKGDSGGPLIC---NG 185
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S G CA+P G+YT V Y+DW++SI+
Sbjct: 186 Q--FQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSII 221
Score = 36.0 bits (84), Expect = 0.014
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
TS +LP + A + + C+ +Y
Sbjct: 126 TSPNATLPDVPHCANINILDYAVCQAAY 153
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 176 bits (449), Expect = 3e-52
Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 22/186 (11%)
Query: 220 HEQRRRVERIYT--------DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVT 271
+ E ++ ++ + NDIAL+ L P K VSPICLP
Sbjct: 144 KSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYN 203
Query: 272 ADVGL---ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQC----QV 324
G ISGWGR + L+AA +P+ P +C+ ++ +
Sbjct: 204 LMDGDLGLISGWGRTEKRDR-AVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMI 262
Query: 325 CTGTKQGGLDSCQGDSGGPLACPLPD--GRYYLCGITSWGVGCARPDFYGVYTLVSCYSD 382
C G + G+DSC+GDSGG A P+ ++Y G+ SWG C G+YT V Y D
Sbjct: 263 CAG-GEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGTY---GLYTRVKNYVD 318
Query: 383 WVKSIL 388
W+ +
Sbjct: 319 WIMKTM 324
Score = 152 bits (386), Expect = 4e-43
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L P K VSPICLP G D+GLISGWGR +
Sbjct: 179 RLKDPVKMGPTVSPICLPGTSSDYNLMDG------------DLGLISGWGRTEKRDR-AV 225
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQC----QVCTGTKQGGLDSCQGDSGGPLACP 175
L+AA +P+ P +C+ ++ +C G + G+DSC+GDSGG A
Sbjct: 226 RLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCKGDSGGAFAVQ 284
Query: 176 LPD--GRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
P+ ++Y G+ SWG C G+YT V Y DW+ +
Sbjct: 285 DPNDKTKFYAAGLVSWGPQCGTY---GLYTRVKNYVDWIMKTM 324
Score = 34.7 bits (80), Expect = 0.042
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYELTRPFKFNE 69
E L+AA +P+ P +C+ + F
Sbjct: 219 EKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTP 259
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 172 bits (438), Expect = 7e-52
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 219 RHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-L 276
R ++ + + YD ND+ LL+L R V+ + LP TV A
Sbjct: 65 RQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQ 124
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
++GWG GG L + V +TP+++CR + VCTG C
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN-------------NVCTGVLTRRGGIC 171
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
GD G PL C G+ S+ +G C R +T V+ + DW+ +L
Sbjct: 172 NGDGGTPLVC-----EGLAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVL 217
Score = 142 bits (360), Expect = 2e-40
Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 35/158 (22%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R V+ + LP TV A ++GWG GG L
Sbjct: 94 QLDREANLTSSVTILPLPLQNATVEAG--------------TRCQVAGWGSQRSGGRLSR 139
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ V +TP+++CR + VCTG C GD G PL C
Sbjct: 140 FPRFVNVTVTPEDQCRPN-------------NVCTGVLTRRGGICNGDGGTPLVC----- 181
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
G+ S+ +G C R +T V+ + DW+ +L
Sbjct: 182 EGLAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVL 217
Score = 36.0 bits (84), Expect = 0.013
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRS 53
GG L + V +TP+++CR +
Sbjct: 130 SQRSGGRLSRFPRFVNVTVTPEDQCRPN 157
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 172 bits (438), Expect = 9e-52
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 220 HEQRRRVER--IYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLI 277
EQ R + + DI L+ L RP ++ ++P+ LP+ V I
Sbjct: 64 DEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGV-GSRCRI 122
Query: 278 SGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG++S + P + + + + C Y + +C G +GG D+C
Sbjct: 123 MGWGKISTT-TYPDVPHCTNIFIVKHKWCEPLY----PWVPADSRTLCAGILKGGRDTCH 177
Query: 338 GDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGPL C + GI + G C + VYT V Y++W++SI+
Sbjct: 178 GDSGGPLIC-----NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224
Score = 146 bits (371), Expect = 6e-42
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L RP ++ ++P+ LP+ V I GWG++S + P
Sbjct: 93 RLRRPVTYSTHIAPVSLPSRSRGV----------------GSRCRIMGWGKISTT-TYPD 135
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+ + + + C Y + +C G +GG D+C GDSGGPL C
Sbjct: 136 VPHCTNIFIVKHKWCEPLY----PWVPADSRTLCAGILKGGRDTCHGDSGGPLIC----- 186
Query: 180 RYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI + G C + VYT V Y++W++SI+
Sbjct: 187 NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224
Score = 32.9 bits (76), Expect = 0.11
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSY 54
+ P + + + + C Y
Sbjct: 129 STTTYPDVPHCTNIFIVKHKWCEPLY 154
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 172 bits (438), Expect = 9e-52
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 220 HEQRRRVERIYT------------DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG 267
Q R V + + + + +D+ LL L++P + V PI LP
Sbjct: 62 SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKE 121
Query: 268 LTVTADVGLISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCT 326
L SGWG ++ P LQ + L P E C + Y + +C
Sbjct: 122 PKP-GSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVY-----LQKVTDVMLCA 175
Query: 327 GTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVK 385
G GG D+C+ DSGGPL C L G TS+G V C +P +YT + ++ W+K
Sbjct: 176 GEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIK 230
Query: 386 SIL 388
+
Sbjct: 231 DTM 233
Score = 147 bits (373), Expect = 3e-42
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L++P + V PI LP L SGWG ++ P
Sbjct: 101 RLSKPADITDVVKPIALPTKEPKP-GSKCLASGWGSITPT--------------RWQKPD 145
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ + L P E C + Y + +C G GG D+C+ DSGGPL C
Sbjct: 146 DLQCVFITLLPNENCAKVY-----LQKVTDVMLCAGEMGGGKDTCRDDSGGPLIC----- 195
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L G TS+G V C +P +YT + ++ W+K +
Sbjct: 196 DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 33.7 bits (78), Expect = 0.071
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
T P LQ + L P E C + Y
Sbjct: 137 TPTRWQKPDDLQCVFITLLPNENCAKVY 164
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 180 bits (459), Expect = 1e-51
Identities = 71/241 (29%), Positives = 105/241 (43%), Gaps = 24/241 (9%)
Query: 159 GGLDSCQGDSGGPLACPLPDGRYYLCGIT----SWGVG---CARPDFYGVYTLVSCYSDW 211
GG + GD P + D CG W + C R Y + + DW
Sbjct: 324 GGKRAQLGDL--PWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDW 381
Query: 212 VKSILYARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNE----FVSPICLPNP 266
+ + V+RI + Y+ Y+NDIAL+E+ + + P C+P
Sbjct: 382 IHP--DLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWS 439
Query: 267 GLTVTA-DVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVC 325
D ++SGWGR + + LQ EV L C + Y + + + C
Sbjct: 440 PYLFQPNDTCIVSGWGREKDNERVF-SLQWGEVKLISN--CSKFY----GNRFYEKEMEC 492
Query: 326 TGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVK 385
GT G +D+C+GDSGGPL C + Y+ G+ SWG C +P+F GVYT V+ Y DW+
Sbjct: 493 AGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWIS 552
Query: 386 S 386
Sbjct: 553 Y 553
Score = 148 bits (376), Expect = 5e-40
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 60 ELTRPFKFNE----FVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGG 115
E+ + + P C+P + + +SGWGR +
Sbjct: 416 EMKKDGNKKDCELPRSIPACVPWSPYLFQPND---TCI-----------VSGWGREKDNE 461
Query: 116 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 175
+ LQ EV L C + Y + + + C GT G +D+C+GDSGGPL C
Sbjct: 462 RVF-SLQWGEVKLISN--CSKFY----GNRFYEKEMECAGTYDGSIDACKGDSGGPLVCM 514
Query: 176 LPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKS 214
+ Y+ G+ SWG C +P+F GVYT V+ Y DW+
Sbjct: 515 DANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISY 553
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 171 bits (437), Expect = 1e-51
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
+Q + + Y + ND+ L++L R + + V PI + + + L+S
Sbjct: 64 GQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKC-LVS 122
Query: 279 GWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQ 337
GWG P +LQ + + ++ C + Y ++ C G + G DSCQ
Sbjct: 123 GWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA-----YPRQIDDTMFCAGD-KAGRDSCQ 176
Query: 338 GDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 388
GDSGGP+ C L G+ SWG CARP+ GVYT + ++ W++ +
Sbjct: 177 GDSGGPVVC-----NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223
Score = 141 bits (357), Expect = 5e-40
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R + + V PI + + + L+SGWG P
Sbjct: 92 KLNRRIRPTKDVRPINVSSHCPSAGTKC-LVSGWGTTKSP--------------QVHFPK 136
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ + + ++ C +Y ++ C G + G DSCQGDSGGP+ C
Sbjct: 137 VLQCLNISVLSQKRCEDAY-----PRQIDDTMFCAGD-KAGRDSCQGDSGGPVVC----- 185
Query: 180 RYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+ SWG CARP+ GVYT + ++ W++ +
Sbjct: 186 NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223
Score = 34.4 bits (80), Expect = 0.041
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
S P +LQ + + ++ C +Y
Sbjct: 128 KSPQVHFPKVLQCLNISVLSQKRCEDAY 155
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 171 bits (435), Expect = 2e-51
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLIS 278
Q Y++ + ND+ L++L ++ + I + + T L+S
Sbjct: 63 GSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSC-LVS 121
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG L+ G +P +LQ V + +E C + Y + C G Q DSC G
Sbjct: 122 GWGLLA-NGRMPTVLQCVNVSVVSEEVCSKLY-----DPLYHPSMFCAGGGQDQKDSCNG 175
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSI 387
DSGGPL C YL G+ S+G C + GVYT + +++W++
Sbjct: 176 DSGGPLIC-----NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220
Score = 141 bits (357), Expect = 5e-40
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 28/157 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L ++ + I + + T G L+SGWG L+ G +P
Sbjct: 91 KLDESVSESDTIRSISIASQCPTA---------------GNSC-LVSGWGLLA-NGRMPT 133
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+LQ V + +E C + Y + C G Q DSC GDSGGPL C
Sbjct: 134 VLQCVNVSVVSEEVCSKLY-----DPLYHPSMFCAGGGQDQKDSCNGDSGGPLIC----- 183
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSI 215
YL G+ S+G C + GVYT + +++W++
Sbjct: 184 NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220
Score = 32.5 bits (75), Expect = 0.14
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSY 54
G +P +LQ V + +E C + Y
Sbjct: 127 ANGRMPTVLQCVNVSVVSEEVCSKLY 152
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 171 bits (436), Expect = 2e-51
Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 220 HEQRRRVERI------------YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG 267
+Q R V + + Y ND+ LL L++P + V PI LP
Sbjct: 65 SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE 124
Query: 268 LTVTADVGLISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCT 326
+ L SGWG + P LQ + L P E+C +++ + +C
Sbjct: 125 PKL-GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAH-----EMKVTDAMLCA 178
Query: 327 GTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVK 385
G GG +C+ DSGGPL C L GITSWG C P VYT + +S W++
Sbjct: 179 GEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIR 233
Query: 386 SIL 388
+
Sbjct: 234 ETM 236
Score = 146 bits (371), Expect = 6e-42
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L++P + V PI LP + L SGWG + P
Sbjct: 104 RLSKPADITDVVKPITLPTEEPKL-GSTCLASGWGSTTPI--------------KFKYPD 148
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ + L P E+C +++ + +C G GG +C+ DSGGPL C
Sbjct: 149 DLQCVNLKLLPNEDCDKAH-----EMKVTDAMLCAGEMDGGSYTCEHDSGGPLIC----- 198
Query: 180 RYYLCGITSWGV-GCARPDFYGVYTLVSCYSDWVKSIL 216
L GITSWG C P VYT + +S W++ +
Sbjct: 199 DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 33.3 bits (77), Expect = 0.092
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
T P LQ + L P E+C +++
Sbjct: 140 TPIKFKYPDDLQCVNLKLLPNEDCDKAH 167
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 169 bits (431), Expect = 1e-50
Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 220 HEQRRRVERIYT------------DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG 267
QRR V + + + ND+ LL L+ P V I LP
Sbjct: 60 FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKE 119
Query: 268 LTVTADVGLISGWGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCT 326
V L SGWG + + H LQ + L E+C +Y + + +C
Sbjct: 120 PKV-GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETY-----KDNVTDVMLCA 173
Query: 327 GTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVK 385
G +GG D+C GDSGGPL C L GITS G CA+P +Y + ++ W+K
Sbjct: 174 GEMEGGKDTCAGDSGGPLIC-----DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIK 228
Query: 386 SIL 388
++
Sbjct: 229 KVM 231
Score = 144 bits (366), Expect = 3e-41
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L+ P V I LP V L SGWG + + H
Sbjct: 99 HLSEPADITGGVKVIDLPTKEPKV-GSTCLASGWGSTNPS--------------EMVVSH 143
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
LQ + L E+C +Y + + +C G +GG D+C GDSGGPL C
Sbjct: 144 DLQCVNIHLLSNEKCIETY-----KDNVTDVMLCAGEMEGGKDTCAGDSGGPLIC----- 193
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
L GITS G CA+P +Y + ++ W+K ++
Sbjct: 194 DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM 231
Score = 33.3 bits (77), Expect = 0.093
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ H LQ + L E+C +Y
Sbjct: 135 NPSEMVVSHDLQCVNIHLLSNEKCIETY 162
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 168 bits (428), Expect = 2e-50
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 220 HEQRRRVERIYTDF-YDKSIYK---NDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG 275
EQ +V + Y+ S + +DI L+ L + V P+ L N V
Sbjct: 62 PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKV-GQKC 120
Query: 276 LISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLD 334
+ISGWG ++ + P+ L AEV + + +C R+ Y + + VC G+ G D
Sbjct: 121 IISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA-----YPGKITEGMVCAGS-SNGAD 174
Query: 335 SCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
+CQGDSGGPL C L GITSWG C +P+ GVYT + Y+ W+K +
Sbjct: 175 TCQGDSGGPLVC-----DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
Score = 140 bits (356), Expect = 7e-40
Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 27/158 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L + V P+ L N V +ISGWG ++ + P+
Sbjct: 93 RLQNSANLGDKVKPVQLANLCPKV-GQKCIISGWGTVTSP--------------QENFPN 137
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
L AEV + + +C R+Y + + VC G+ G D+CQGDSGGPL C
Sbjct: 138 TLNCAEVKIYSQNKCERAY-----PGKITEGMVCAGS-SNGADTCQGDSGGPLVC----- 186
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
L GITSWG C +P+ GVYT + Y+ W+K +
Sbjct: 187 DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
Score = 33.7 bits (78), Expect = 0.067
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
TS + P+ L AEV + + +C R+Y
Sbjct: 129 TSPQENFPNTLNCAEVKIYSQNKCERAY 156
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 173 bits (439), Expect = 5e-50
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 218 ARHEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTAD--- 273
A +E+ + YD +DIALL+L R F + + PICLP
Sbjct: 198 APPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQI 257
Query: 274 -VGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGG 332
++GWG E GS +L A VPL P+ C ++ Y + Q+C G
Sbjct: 258 STYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACSQA-----YRRAVPLSQLCVGG-GDL 310
Query: 333 LDSCQGDSGGPLACPLP-----DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKS 386
DSC+GDSGGPL P + GI S G V C + G+YT V Y W+
Sbjct: 311 QDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITD 370
Query: 387 ILYAS 391
+ ++
Sbjct: 371 TMASN 375
Score = 145 bits (368), Expect = 7e-40
Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L R F + + PICLP + + + ++GWG E GS
Sbjct: 228 KLNRSVPFQKHIKPICLPITDELKEKAEQISTYF-----------VTGWGTT-ENGSSSD 275
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLP-- 177
+L A VPL P+ C ++Y + Q+C G DSC+GDSGGPL P
Sbjct: 276 VLLQANVPLQPRSACSQAY-----RRAVPLSQLCVGG-GDLQDSCKGDSGGPLQAPAQYL 329
Query: 178 ---DGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
+ GI S G V C + G+YT V Y W+ +
Sbjct: 330 GEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTM 372
Score = 34.9 bits (80), Expect = 0.046
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSYAV--------AGYE 60
T+E GS +L A VPL P+ C ++Y G
Sbjct: 267 TTENGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGG 308
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 167 bits (426), Expect = 5e-50
Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 31/186 (16%)
Query: 220 HEQRRRVERIYT------------DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG 267
Q +V + +D+ LL L+ P + + V + LP
Sbjct: 62 TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQE 121
Query: 268 LTVTADVG---LISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQ 323
+ G SGWG + E P LQ ++ + + C + + + +
Sbjct: 122 PAL----GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVH-----PQKVTKFM 172
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSD 382
+C G GG +C GDSGGPL C L GITSWG CA P+ +YT V Y
Sbjct: 173 LCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGITSWGSEPCALPERPSLYTKVVHYRK 227
Query: 383 WVKSIL 388
W+K +
Sbjct: 228 WIKDTI 233
Score = 144 bits (366), Expect = 4e-41
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 32/161 (19%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVG---LISGWGRLSEGADVGLISGWGRLSEGGS 116
L+ P + + V + LP + G SGWG + E
Sbjct: 101 RLSEPAELTDAVKVMDLPTQEPAL----GTTCYASGWGSIE--------------PEEFL 142
Query: 117 LPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPL 176
P LQ ++ + + C + + + + +C G GG +C GDSGGPL C
Sbjct: 143 TPKKLQCVDLHVISNDVCAQVH-----PQKVTKFMLCAGRWTGGKSTCSGDSGGPLVC-- 195
Query: 177 PDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L GITSWG CA P+ +YT V Y W+K +
Sbjct: 196 ---NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI 233
Score = 33.0 bits (76), Expect = 0.12
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
E P LQ ++ + + C + +
Sbjct: 137 EPEEFLTPKKLQCVDLHVISNDVCAQVH 164
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 167 bits (426), Expect = 6e-50
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 220 HEQRRRVERIYT------------DFYDKSIYKNDIALLELTRP-FKFNEFVSPICLPNP 266
Q V + Y +D+ LL LT P + V + LP
Sbjct: 62 TAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTE 121
Query: 267 GLTVTADVGLISGWGRL-SEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVC 325
V L SGWG + E S P LQ ++ + P +EC++++ + +C
Sbjct: 122 EPEV-GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAH-----VQKVTDFMLC 175
Query: 326 TGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWV 384
G +GG D+C GDSGGPL C L G+TSWG V C P+ V V Y W+
Sbjct: 176 VGHLEGGKDTCVGDSGGPLMC-----DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWI 230
Query: 385 KSIL 388
+ +
Sbjct: 231 EDTI 234
Score = 143 bits (363), Expect = 9e-41
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 60 ELTRP-FKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLP 118
LT P + V + LP V L SGWG + E S P
Sbjct: 101 RLTEPADTITDAVKVVELPTEEPEV-GSTCLASGWGSIE--------------PENFSFP 145
Query: 119 HILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPD 178
LQ ++ + P +EC++++ + +C G +GG D+C GDSGGPL C
Sbjct: 146 DDLQCVDLKILPNDECKKAH-----VQKVTDFMLCVGHLEGGKDTCVGDSGGPLMC---- 196
Query: 179 GRYYLCGITSWG-VGCARPDFYGVYTLVSCYSDWVKSIL 216
L G+TSWG V C P+ V V Y W++ +
Sbjct: 197 -DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234
Score = 34.9 bits (81), Expect = 0.030
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
E S P LQ ++ + P +EC++++
Sbjct: 138 EPENFSFPDDLQCVDLKILPNDECKKAH 165
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 167 bits (425), Expect = 7e-50
Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 25/183 (13%)
Query: 220 HEQRRRVERIYT------------DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG 267
Q +V + +D+ LL L +P + + V + LP
Sbjct: 62 TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE 121
Query: 268 LTVTADVGLISGWGRLSE-GGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCT 326
+ SGWG +S LQ E+ L E+C R+Y + + +C
Sbjct: 122 PKL-GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAY-----PEKMTEFVLCA 175
Query: 327 GTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVK 385
+ C GDSGG L C GITSWG CA + V+T V + W+K
Sbjct: 176 THRDDSGSICLGDSGGALIC-----DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIK 230
Query: 386 SIL 388
+
Sbjct: 231 ETI 233
Score = 143 bits (364), Expect = 8e-41
Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 26/157 (16%)
Query: 61 LTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHI 120
L +P + + V + LP + SGWG +S +
Sbjct: 102 LAQPARITDAVKILDLPTQEPKL-GSTCYTSGWGLIS--------------TFTNRGSGT 146
Query: 121 LQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
LQ E+ L E+C R+Y + + +C + C GDSGG L C
Sbjct: 147 LQCVELRLQSNEKCARAY-----PEKMTEFVLCATHRDDSGSICLGDSGGALIC-----D 196
Query: 181 YYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
GITSWG CA + V+T V + W+K +
Sbjct: 197 GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233
Score = 33.7 bits (78), Expect = 0.080
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
++ LQ E+ L E+C R+Y
Sbjct: 137 STFTNRGSGTLQCVELRLQSNEKCARAY 164
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 160 bits (406), Expect = 4e-48
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Query: 235 DKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGGS---LPH 291
D Y +D+ LL L P K + V + LP + SGWG + G P
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPD 60
Query: 292 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 351
+Q ++ L C ++ + + + +C G GG D+C GDSGGPL C +G
Sbjct: 61 EIQCVQLTLLQNTFCADAH-----PDKVTESMLCAGYLPGGKDTCMGDSGGPLIC---NG 112
Query: 352 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 388
GITSWG C + +YT + Y DW+ +
Sbjct: 113 M--WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
Score = 141 bits (358), Expect = 5e-41
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 24/158 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L P K + V + LP + SGWG + G + P
Sbjct: 14 RLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGP------------DDFEFPD 60
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+Q ++ L C ++ + + + +C G GG D+C GDSGGPL C +G
Sbjct: 61 EIQCVQLTLLQNTFCADAH-----PDKVTESMLCAGYLPGGKDTCMGDSGGPLIC---NG 112
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSIL 216
GITSWG C + +YT + Y DW+ +
Sbjct: 113 M--WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
Score = 32.9 bits (76), Expect = 0.065
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 27 TSEGGSLPHILQAAEVPLTPKEECRRSY 54
+ P +Q ++ L C ++
Sbjct: 52 GPDDFEFPDEIQCVQLTLLQNTFCADAH 79
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 171 bits (434), Expect = 4e-47
Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 220 HEQRRRVERIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LIS 278
H Q V R++ + DIALL+L+ P + V P CLP+P V I+
Sbjct: 629 HVQEIEVSRLFLEPTR-----KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT 683
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
GWG +G +L+ A++P+ + C R + + ++C G GG DSCQG
Sbjct: 684 GWGET-QGTFGAGLLKEAQLPVIENKVCNRYEF---LNGRVQSTELCAGHLAGGTDSCQG 739
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
DSGGPL C +Y L G+TSWG+GCARP+ GVY VS + W++ ++ +
Sbjct: 740 DSGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN 791
Score = 145 bits (367), Expect = 3e-38
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L+ P + V P CLP+P V I+GWG +G
Sbjct: 651 KLSSPAVITDKVIPACLPSPNYVVAD--------RTECF------ITGWGET-QGTFGAG 695
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L+ A++P+ + C R + + ++C G GG DSCQGDSGGPL C
Sbjct: 696 LLKEAQLPVIENKVCNRYEF---LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE-KD 751
Query: 180 RYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+Y L G+TSWG+GCARP+ GVY VS + W++ ++
Sbjct: 752 KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788
Score = 31.2 bits (70), Expect = 0.78
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 29 EGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
+G +L+ A++P+ + C R + G
Sbjct: 689 QGTFGAGLLKEAQLPVIENKVCNRYEFLNG 718
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 154 bits (392), Expect = 5e-45
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 221 EQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISG 279
+ + + Y+ + NDIA++ L P ++ + LP+ + V V +G
Sbjct: 65 QVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVV-TPTG 123
Query: 280 WGRLSEGG-SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
WG S+ + +L+ +VP+ +C Y + +C + GG +C G
Sbjct: 124 WGLPSDSALGISDVLRQVDVPIMSNADCDAVY------GIVTDGNICIDS-TGGKGTCNG 176
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSI 387
DSGGPL GITS+G + +T V+ + DW+++
Sbjct: 177 DSGGPLNY-----NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
Score = 126 bits (318), Expect = 3e-34
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 28/157 (17%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
L P ++ + LP+ + V V +GWG S+ +
Sbjct: 92 RLPVPVTLTAAIATVGLPSTDVGVGTVV-TPTGWGLPSDS--------------ALGISD 136
Query: 120 ILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDG 179
+L+ +VP+ +C Y + +C + GG +C GDSGGPL
Sbjct: 137 VLRQVDVPIMSNADCDAVY------GIVTDGNICIDS-TGGKGTCNGDSGGPLNY----- 184
Query: 180 RYYLCGITSWGVG-CARPDFYGVYTLVSCYSDWVKSI 215
GITS+G + +T V+ + DW+++
Sbjct: 185 NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
Score = 32.9 bits (76), Expect = 0.13
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 26 RTSEGG-SLPHILQAAEVPLTPKEECRRSY 54
S+ + +L+ +VP+ +C Y
Sbjct: 126 LPSDSALGISDVLRQVDVPIMSNADCDAVY 155
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 160 bits (405), Expect = 2e-44
Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 46/214 (21%)
Query: 220 HEQRRRVERIY----------TDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLT 269
++ +E + + Y D+AL++L K+ + + PICLP T
Sbjct: 277 EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGT 336
Query: 270 VTA-DVGLISGWGRLSEG------------GSLPHILQAAEVPLTPKEE---CRRSYAVA 313
A + + + E L EV + ++ C R A
Sbjct: 337 TRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYA 396
Query: 314 GYSNYLNQCQ-------VCTGTKQG--GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV- 363
+ + +CTG ++C+GDSGGPL R+ G+ SWGV
Sbjct: 397 PGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVV 455
Query: 364 -GCARP--------DFYGVYTLVSCYSDWVKSIL 388
C + + W+K L
Sbjct: 456 DVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 489
Score = 141 bits (357), Expect = 1e-37
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTA-DVGLISGWGRLSEGADVGLISGWGRLSEGGSLP 118
+L K+ + + PICLP T A + + + E L + +
Sbjct: 314 KLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEE---LLPAQDIKALFVSEEE 370
Query: 119 HILQAAEVPLTPKEE---CRRSYAVAGYSNYLNQCQ-------VCTGTKQG--GLDSCQG 166
L EV + ++ C R A + + +CTG ++C+G
Sbjct: 371 KKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG 430
Query: 167 DSGGPLACPLPDGRYYLCGITSWGV--GCARP--------DFYGVYTLVSCYSDWVKSIL 216
DSGGPL R+ G+ SWGV C + + W+K L
Sbjct: 431 DSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 489
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 152 bits (384), Expect = 2e-41
Identities = 37/222 (16%), Positives = 69/222 (31%), Gaps = 50/222 (22%)
Query: 215 ILYARHEQRRRVERI----------YTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLP 264
++ + +E+ + Y +DIALL+L + K + PICLP
Sbjct: 281 DPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLP 340
Query: 265 NPGLTVTA------DVGLISGWGRLSEGGSLPH--ILQAAEVPLT-----PKEECRRSYA 311
A L++ H L +++ + C +
Sbjct: 341 CTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVS 400
Query: 312 VAGYSNYLNQCQ--------VCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGV 363
+C+GT++ C+G+SGG + R++ G+ SWG+
Sbjct: 401 QEKTMFPNLTDVREVVTDQFLCSGTQEDE-SPCKGESGGAVFLER-RFRFFQVGLVSWGL 458
Query: 364 -----GCAR------------PDFYGVYTLVSCYSDWVKSIL 388
G A P + + W++ L
Sbjct: 459 YNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHL 500
Score = 131 bits (331), Expect = 5e-34
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 43/189 (22%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPH 119
+L + K + PICLP A++ L G L++ H
Sbjct: 323 KLAQKVKMSTHARPICLPCTM---EANLALRRPQG------STCRDHENELLNKQSVPAH 373
Query: 120 --ILQAAEVPLT-----PKEECRRSYAVAGYSNYLNQCQ--------VCTGTKQGGLDSC 164
L +++ + C + +C+GT++ C
Sbjct: 374 FVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDE-SPC 432
Query: 165 QGDSGGPLACPLPDGRYYLCGITSWGV-----GCAR------------PDFYGVYTLVSC 207
+G+SGG + R++ G+ SWG+ G A P + +
Sbjct: 433 KGESGGAVFLER-RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFR 491
Query: 208 YSDWVKSIL 216
W++ L
Sbjct: 492 MQPWLRQHL 500
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 142 bits (360), Expect = 2e-40
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 221 EQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG---L 276
E ERI + ++ Y ND+AL+++ ++ + + PI LP+
Sbjct: 66 EAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEELNNKFENIWAT 124
Query: 277 ISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSC 336
+SGWG+ + ILQ + + C + Y + + +C T G C
Sbjct: 125 VSGWGQSNTDTV---ILQYTYNLVIDNDRCAQEY----PPGIIVESTICGDT-SDGKSPC 176
Query: 337 QGDSGGPLACPLPDGRYYLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKS 386
GDSGGP + L G+ S+ GC ++ V+ Y DW++
Sbjct: 177 FGDSGGPFVL---SDKNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQ 224
Score = 119 bits (300), Expect = 9e-32
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 26/155 (16%)
Query: 62 TRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGLISGWGRLSEGGSLPHIL 121
++ + + PI LP+ +SGWG+ + IL
Sbjct: 94 IPHVEYTDNIQPIRLPSGEELNNKFEN------------IWATVSGWGQSNTDTV---IL 138
Query: 122 QAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGRY 181
Q + + C + Y + + +C T G C GDSGGP +
Sbjct: 139 QYTYNLVIDNDRCAQEY----PPGIIVESTICGDT-SDGKSPCFGDSGGPFVL---SDKN 190
Query: 182 YLCGITSWG--VGCARPDFYGVYTLVSCYSDWVKS 214
L G+ S+ GC ++ V+ Y DW++
Sbjct: 191 LLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQ 224
Score = 28.3 bits (64), Expect = 3.3
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 26 RTSEGGSLPHILQAAEVPLTPKEECRRSY 54
+++ ILQ + + C + Y
Sbjct: 130 QSNTDTV---ILQYTYNLVIDNDRCAQEY 155
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 144 bits (364), Expect = 8e-38
Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 46/214 (21%)
Query: 220 HEQRRRVERIY----------TDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLT 269
++ +E + + Y D+AL++L K+ + + PICLP T
Sbjct: 519 EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGT 578
Query: 270 VTADV------GLISGWGRLSEGGS-------LPHILQAAEVPLTPKEE---CRRSYAVA 313
A L L EV + ++ C R A
Sbjct: 579 TRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYA 638
Query: 314 GYSNYLNQCQ-------VCTGTKQG--GLDSCQGDSGGPLACPLPDGRYYLCGITSWGV- 363
+ + +CTG ++C+GDSGGPL R+ G+ SWGV
Sbjct: 639 PGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVV 697
Query: 364 -GCARP--------DFYGVYTLVSCYSDWVKSIL 388
C + + W+K L
Sbjct: 698 DVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 731
Score = 124 bits (311), Expect = 7e-31
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTAD-VGLISGWGRLSEGADVGLISGWGRLSEGGSLP 118
+L K+ + + PICLP T A + + + E L + +
Sbjct: 556 KLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEEL---LPAQDIKALFVSEEE 612
Query: 119 HILQAAEVPLTPKEE---CRRSYAVAGYSNYLNQCQ-------VCTGTKQG--GLDSCQG 166
L EV + ++ C R A + + +CTG ++C+G
Sbjct: 613 KKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG 672
Query: 167 DSGGPLACPLPDGRYYLCGITSWGV--GCARP--------DFYGVYTLVSCYSDWVKSIL 216
DSGGPL R+ G+ SWGV C + + W+K L
Sbjct: 673 DSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 731
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 121 bits (306), Expect = 4e-34
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 287 GSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLAC 346
+ P LQ A +PL C++ + + +C G G+ SC GDSGGPL C
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYW-----GTKIKDAMICAG--ASGVSSCMGDSGGPLVC 53
Query: 347 PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYAS 391
+G + L GI SWG GVY V+ +WV+ L A+
Sbjct: 54 K-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN 97
Score = 121 bits (306), Expect = 4e-34
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 115 GSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLAC 174
+ P LQ A +PL C++ + + +C G G+ SC GDSGGPL C
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYW-----GTKIKDAMICAG--ASGVSSCMGDSGGPLVC 53
Query: 175 PLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSIL 216
+G + L GI SWG GVY V+ +WV+ L
Sbjct: 54 K-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
Score = 33.7 bits (78), Expect = 0.018
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 31 GSLPHILQAAEVPLTPKEECRRSY 54
+ P LQ A +PL C++ +
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYW 24
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 73.8 bits (182), Expect = 4e-16
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 220 HEQRRRVERIYT-DFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVG-LI 277
Q+ ++ +++ Y+ NDI LL+L+ F++ VS +CLP+ A +
Sbjct: 64 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVT 123
Query: 278 SGWGRL 283
+GWG
Sbjct: 124 TGWGLT 129
Score = 45.6 bits (109), Expect = 2e-06
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 60 ELTRPFKFNEFVSPICLPNPGLTVTADVG-LISGWGRL 96
+L+ F++ VS +CLP+ A + +GWG
Sbjct: 92 KLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT 129
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 48.8 bits (116), Expect = 7e-07
Identities = 16/160 (10%), Positives = 44/160 (27%), Gaps = 30/160 (18%)
Query: 228 RIYTDFYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGLISGWGRLSEGG 287
+ + + + + D A+++ V + + ISG+
Sbjct: 83 YVPSGYINTGASQYDFAVIKTDTNI--GNTVGYRSIRQVTNLTGTTIK-ISGYPGDKMRS 139
Query: 288 SLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACP 347
+ +T ++ Y +D+ G+SG +
Sbjct: 140 TGKVSQWEMSGSVTREDTNLAYY---------------------TIDTFSGNSGSAML-- 176
Query: 348 LPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSI 387
D + G+ + G + G + + +++
Sbjct: 177 --DQNQQIVGVHNAGYSNGTIN-GGPK-ATAAFVEFINYA 212
Score = 39.6 bits (92), Expect = 8e-04
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 136 RSYAVAGYSNYLNQCQVC---TGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVG 192
+ + S + V T +D+ G+SG + D + G+ + G
Sbjct: 136 KMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAML----DQNQQIVGVHNAGYS 191
Query: 193 CARPDFYGVYTLVSCYSDWVKSI 215
+ G + + +++
Sbjct: 192 NGTIN-GGPK-ATAAFVEFINYA 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 49/324 (15%), Positives = 97/324 (29%), Gaps = 80/324 (24%)
Query: 7 FVEGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTP---------KEECR-RSYAV 56
+ + +LF LL + E + + E L K E R S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 57 AGYELTRPFKFN--EFVSPICLPNPGLTVTADVGLISGWGRLSEGADVGL--ISGWGRLS 112
Y R +N + + + + L+ L +V + + G G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVLIDGVLGSGK-- 163
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLN--QCQVCTGTKQGGLDSCQGDSGG 170
+ A +V L+ K +C+ + + +LN C + + L+ Q
Sbjct: 164 ------TWV-ALDVCLSYKVQCKMDFKIF----WLNLKNCN----SPETVLEMLQK---- 204
Query: 171 PLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVSCYSDWVKSILYARHEQRRRVER-- 228
L +R D L +++ L R + + E
Sbjct: 205 ------------LLYQID-PNWTSRSDHSSNIKLR---IHSIQAEL-RRLLKSKPYENCL 247
Query: 229 -IYTDFYDKSIYKN-DIA--LLELTRPFKFNEFVSP-----ICL--PNPGLTVTADVGLI 277
+ + + + +++ +L TR + +F+S I L + LT L+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 278 SGWGRLSEGGSLPHILQAAEV-PL 300
+ LP + P
Sbjct: 308 LKYLDCRP-QDLPR--EVLTTNPR 328
Score = 38.3 bits (88), Expect = 0.004
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 31/125 (24%)
Query: 208 YSDWVKSILYARHEQRRRVERIYTDFYDKSIYKNDIALLE---LTRPFKFNEFVSPICL- 263
Y ++ S + Q + R+Y + D+ +Y ND + ++R + + L
Sbjct: 91 Y-KFLMSPIKTEQRQPSMMTRMYIEQRDR-LY-NDNQVFAKYNVSRLQPYLKLRQ--ALL 145
Query: 264 ---PNPGLTVTADVGLISGWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLN 320
P + + G+ GS + A +V L+ K +C+ + + +LN
Sbjct: 146 ELRPAKNVLI---DGV---------LGSGKTWV-ALDVCLSYKVQCKMDFKIF----WLN 188
Query: 321 --QCQ 323
C
Sbjct: 189 LKNCN 193
Score = 29.1 bits (64), Expect = 4.0
Identities = 45/289 (15%), Positives = 83/289 (28%), Gaps = 84/289 (29%)
Query: 8 VEGNPRQLHHQLFIILLR---------RTSEGGSLPHILQAAEVPLTPKEECRRSYAVAG 58
+ NP + +R + L I++++ L P E R+ +
Sbjct: 323 LTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMF---- 375
Query: 59 YELTRPFKFNEFVSPICLPNPGLTV------TADVGLISGWGRLSEGADVGLISGWGRLS 112
L F I P L++ +DV ++ +++ L+ +
Sbjct: 376 DRL---SVFPPSA-HI--PTILLSLIWFDVIKSDVMVV-----VNKLHKYSLVEKQPK-E 423
Query: 113 EGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPL 172
S+P I +V L + RS V Y+ D P
Sbjct: 424 STISIPSIYLELKVKLENEYALHRS-IVDHYNIPKTFDS---------------DDLIP- 466
Query: 173 ACPLPDGRYYLCGITSWGVG-----CARPDFYGVYTLVSCYSD--WVKSILYARHE---- 221
P D +Y +G P+ ++ +V + D +++ + RH+
Sbjct: 467 --PYLDQYFY------SHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKI--RHDSTAW 514
Query: 222 -QRRRVERIYTDF--YDKSIYKNDIALLELTRPFKFNEFVSPICLPNPG 267
+ Y I ND L +F LP
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DF-----LPKIE 556
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 35.4 bits (81), Expect = 0.018
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 25/156 (16%)
Query: 222 QRRRVERIYTD--FYDKSIYKNDIALLELTRPFKFNEFVSPICLPNPGLTVTADVGL-IS 278
E + T + ++ +++D A L V + G S
Sbjct: 69 GVWAAEELVTSAEWANRGDFEHDYAFAVLETKG--GTTVQQQVGTASPIAFNQPRGQYYS 126
Query: 279 GWGRLSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQG 338
+G + L + T + + C + G
Sbjct: 127 AYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGI--------PC-----------NMTGG 167
Query: 339 DSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVY 374
SGGP S+G +G Y
Sbjct: 168 SSGGPWFLG-NGTGGAQNSTNSYGYTFLPNVMFGPY 202
Score = 32.8 bits (74), Expect = 0.16
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 162 DSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVY 202
+ G SGGP S+G +G Y
Sbjct: 163 NMTGGSSGGPWFLG-NGTGGAQNSTNSYGYTFLPNVMFGPY 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.19
Identities = 40/224 (17%), Positives = 62/224 (27%), Gaps = 84/224 (37%)
Query: 3 TIQDFVEGNPRQL--H---------HQLFIILLRRTSEGGSLPH--ILQAAEVPLT---- 45
+I D V NP L H + + ++ T G L I + T
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 46 --PKEECRR-----------SYAVAGYELTRPFKFNEFVSPIC-------LPNPG----L 81
K A +E + ++ + P L G L
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAA--FEDLK----SKGLIPADATFAGHSL---GEYAAL 1770
Query: 82 TVTADVGLISGWGRLSEGADVGLISGWGRL-------SEGGSLPHILQA---AEVPLTPK 131
ADV +S + + ++ G E G + + A V +
Sbjct: 1771 ASLADV--MS----IESLVE--VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 132 EE-----CRRSYAVAGYS----NYLN---QCQ-VCTGTKQGGLD 162
+E R G+ NY N Q Q V G + LD
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNY-NVENQ-QYVAAGDLR-ALD 1863
Score = 31.9 bits (72), Expect = 0.48
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 25/78 (32%)
Query: 2 NTIQDFV-EGNPRQLHHQLFIILLRRTSEGGSLPHILQAAEVPLTPKEECRRSYAVAGYE 60
N ++ V G P+ L+ + LR+ P L + +P +
Sbjct: 372 NGAKNLVVSGPPQSLYG--LNLTLRKAKA----PSGLDQSRIPFSE-------------- 411
Query: 61 LTRPFKF-NEFVSPICLP 77
R KF N F+ P+ P
Sbjct: 412 --RKLKFSNRFL-PVASP 426
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 28.0 bits (62), Expect = 4.6
Identities = 25/146 (17%), Positives = 40/146 (27%), Gaps = 24/146 (16%)
Query: 78 NPGLTVTADVGLISGWGRLSEGADVGLI--------SGWGRLSEGGSLPHILQAAEVPL- 128
+ G V+ G + G D + + G + ++ P+
Sbjct: 38 SVGTQVSIGNGRGVFERSVFPGNDAAFVRGTSNFTLTNLVSRYNSGGYATVSGSSTAPIG 97
Query: 129 --------TPKEECRRSYAVAGYSNYLNQCQVCTGTKQGGLDSCQGDSGGPLACPLPDGR 180
T C A +Y + + + GDSGG G
Sbjct: 98 SQVCRSGSTTGWYCGTIQARNQTVSYPQGT--VHSLTRTSVCAEPGDSGGSFI----SGT 151
Query: 181 YYLCGITSWGVGCARPDFYGVYTLVS 206
G+TS G G R Y V+
Sbjct: 152 QAQ-GVTSGGSGNCRTGGTTFYQEVN 176
Score = 27.2 bits (60), Expect = 9.1
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 324 VCTGTKQGGLDSCQGDSGGPLACPLPDGRYYLCGITSWGVGCARPDFYGVYTLVS 378
+ + + GDSGG G G+TS G G R Y V+
Sbjct: 127 TVHSLTRTSVCAEPGDSGGSFI----SGTQAQ-GVTSGGSGNCRTGGTTFYQEVN 176
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 28.0 bits (62), Expect = 7.6
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 87 VGLISGWGRLSEGADVGLISGWGRLSEGGS-----------LPHILQAAEVPLTPKEECR 135
V + GWG G GL + G+ +P + L +
Sbjct: 535 VSVAVGWG----GV-YGLAARATERQGPGTVYTFVVGGKARMPEFVAQRTGQLLQGVKYD 589
Query: 136 RSYAVAGYSNYLNQCQVCTGT 156
+ AG Y+ C C G
Sbjct: 590 PAKVEAGTMLYVANCVFCHGV 610
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 28.0 bits (62), Expect = 7.7
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 87 VGLISGWGRLSEGADVGLISGWGRLSEGGS-----------LPHILQAAEVPLTPKEECR 135
V ++GWG + G +S + L + P P
Sbjct: 533 VTFMAGWGG-AFSTFAGALSLRAGVQPYAQVLTYKLGGTAKLQEPAPRPDTPKPPALSND 591
Query: 136 RSYAVAGYSNYLNQCQVCTG 155
+ AG Y C C G
Sbjct: 592 TASIEAGAKLYDGYCSQCHG 611
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.449
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,503,679
Number of extensions: 394406
Number of successful extensions: 1959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 297
Length of query: 406
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,021,377
Effective search space: 1246626870
Effective search space used: 1246626870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)