Query psy2951
Match_columns 1466
No_of_seqs 1373 out of 10171
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:45:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1336|consensus 100.0 1.9E-64 4.2E-69 557.5 38.6 466 987-1465 1-474 (478)
2 PRK09754 phenylpropionate diox 100.0 5.2E-56 1.1E-60 530.6 45.8 388 1066-1463 3-394 (396)
3 KOG1336|consensus 100.0 1.1E-51 2.4E-56 456.4 36.8 445 516-973 1-449 (478)
4 PRK09754 phenylpropionate diox 100.0 1.1E-43 2.4E-48 424.4 42.9 368 595-972 3-374 (396)
5 TIGR02374 nitri_red_nirB nitri 100.0 1.3E-43 2.7E-48 452.9 43.2 374 1069-1455 1-383 (785)
6 PRK14989 nitrite reductase sub 100.0 6E-43 1.3E-47 443.6 44.4 379 1067-1455 4-394 (847)
7 PRK04965 NADH:flavorubredoxin 100.0 9.6E-43 2.1E-47 414.4 41.2 358 1067-1439 3-365 (377)
8 COG1251 NirB NAD(P)H-nitrite r 100.0 1.5E-42 3.2E-47 400.6 29.8 379 1066-1457 3-390 (793)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.6E-40 5.6E-45 386.0 36.2 379 41-444 2-450 (454)
10 PRK14989 nitrite reductase sub 100.0 1.5E-39 3.2E-44 412.6 43.3 368 595-971 3-381 (847)
11 KOG1346|consensus 100.0 5.2E-41 1.1E-45 356.3 22.6 382 1067-1455 179-646 (659)
12 PRK04965 NADH:flavorubredoxin 100.0 7.8E-39 1.7E-43 380.8 40.3 368 595-976 2-373 (377)
13 TIGR02374 nitri_red_nirB nitri 100.0 7.9E-39 1.7E-43 408.8 42.1 363 598-973 1-372 (785)
14 PRK13512 coenzyme A disulfide 100.0 1.7E-38 3.7E-43 383.5 40.4 383 1066-1461 1-414 (438)
15 PRK09564 coenzyme A disulfide 100.0 1.8E-38 3.9E-43 387.9 41.0 384 1068-1459 2-418 (444)
16 PRK13512 coenzyme A disulfide 100.0 1.4E-37 3E-42 375.6 39.3 362 595-967 1-390 (438)
17 PRK09564 coenzyme A disulfide 100.0 4.1E-37 8.9E-42 376.0 40.0 366 596-967 1-396 (444)
18 TIGR01421 gluta_reduc_1 glutat 100.0 7.2E-37 1.6E-41 369.7 34.8 373 42-444 1-446 (450)
19 KOG1335|consensus 100.0 2E-37 4.4E-42 327.6 26.0 383 42-444 38-491 (506)
20 COG1249 Lpd Pyruvate/2-oxoglut 100.0 9.2E-37 2E-41 356.2 33.9 348 594-968 3-416 (454)
21 PLN02507 glutathione reductase 100.0 3.4E-36 7.4E-41 366.5 39.2 375 41-444 23-479 (499)
22 PRK06116 glutathione reductase 100.0 2.6E-36 5.6E-41 367.9 34.9 372 42-444 3-446 (450)
23 PRK06467 dihydrolipoamide dehy 100.0 6.3E-36 1.4E-40 363.7 36.6 391 42-458 3-467 (471)
24 PLN02546 glutathione reductase 100.0 6.8E-36 1.5E-40 363.5 35.1 376 43-444 79-528 (558)
25 PRK06370 mercuric reductase; V 100.0 2E-35 4.3E-40 361.1 39.1 378 42-444 4-449 (463)
26 TIGR01423 trypano_reduc trypan 100.0 1.4E-35 3E-40 358.1 36.8 373 42-444 2-467 (486)
27 COG1251 NirB NAD(P)H-nitrite r 100.0 4.1E-36 8.9E-41 347.4 30.3 410 595-1021 3-429 (793)
28 TIGR01424 gluta_reduc_2 glutat 100.0 1E-35 2.3E-40 360.7 35.3 372 43-444 2-442 (446)
29 PTZ00058 glutathione reductase 100.0 3.2E-35 6.9E-40 357.2 38.3 388 41-444 46-553 (561)
30 PRK05249 soluble pyridine nucl 100.0 3.1E-35 6.8E-40 360.4 37.1 374 41-444 3-449 (461)
31 COG1252 Ndh NADH dehydrogenase 100.0 2.8E-36 6.1E-41 341.2 25.4 308 594-917 2-341 (405)
32 PRK07818 dihydrolipoamide dehy 100.0 5.9E-35 1.3E-39 356.8 37.6 374 43-444 4-452 (466)
33 PRK06115 dihydrolipoamide dehy 100.0 7.2E-35 1.6E-39 354.5 37.9 377 42-444 2-452 (466)
34 PRK06416 dihydrolipoamide dehy 100.0 2.2E-34 4.7E-39 352.7 40.0 378 42-444 3-448 (462)
35 PRK07845 flavoprotein disulfid 100.0 1E-34 2.2E-39 353.1 36.8 376 43-444 1-452 (466)
36 COG1252 Ndh NADH dehydrogenase 100.0 1.1E-35 2.4E-40 336.3 25.3 308 1066-1390 3-343 (405)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.7E-34 5.8E-39 348.5 38.0 375 1080-1463 1-409 (427)
38 PRK14694 putative mercuric red 100.0 2.7E-34 5.9E-39 350.6 38.0 380 38-444 1-449 (468)
39 PLN02507 glutathione reductase 100.0 2.8E-34 6E-39 349.7 36.9 348 593-968 23-445 (499)
40 PRK08010 pyridine nucleotide-d 100.0 4.4E-34 9.5E-39 347.4 38.2 373 42-444 2-433 (441)
41 TIGR01421 gluta_reduc_1 glutat 100.0 1.6E-34 3.5E-39 349.2 34.1 343 595-967 2-411 (450)
42 PRK07846 mycothione reductase; 100.0 5.2E-34 1.1E-38 344.4 37.4 373 43-444 1-442 (451)
43 PRK07251 pyridine nucleotide-d 100.0 4.8E-34 1E-38 346.7 37.1 374 42-444 2-432 (438)
44 PRK06327 dihydrolipoamide dehy 100.0 7.4E-34 1.6E-38 347.0 38.4 380 42-444 3-461 (475)
45 PRK06116 glutathione reductase 100.0 3.7E-34 7.9E-39 349.0 35.4 342 595-967 4-411 (450)
46 TIGR01424 gluta_reduc_2 glutat 100.0 4.3E-34 9.3E-39 346.6 35.5 343 595-967 2-407 (446)
47 PTZ00318 NADH dehydrogenase-li 100.0 4.7E-35 1E-39 352.0 26.3 307 1064-1390 8-360 (424)
48 PRK05976 dihydrolipoamide dehy 100.0 8.1E-34 1.8E-38 347.3 37.4 382 42-444 3-458 (472)
49 TIGR02053 MerA mercuric reduct 100.0 1.5E-33 3.2E-38 345.0 38.1 375 44-444 1-444 (463)
50 PRK14727 putative mercuric red 100.0 1.2E-33 2.6E-38 345.0 37.2 376 42-444 15-460 (479)
51 PRK06467 dihydrolipoamide dehy 100.0 8.7E-34 1.9E-38 345.0 35.6 348 594-968 3-417 (471)
52 PRK06370 mercuric reductase; V 100.0 8.7E-34 1.9E-38 346.6 35.8 347 594-967 4-414 (463)
53 PRK13748 putative mercuric red 100.0 2.9E-33 6.2E-38 351.7 41.1 377 42-444 97-542 (561)
54 PRK05249 soluble pyridine nucl 100.0 1.4E-33 3E-38 345.9 36.9 346 594-967 4-414 (461)
55 PLN02546 glutathione reductase 100.0 7.5E-34 1.6E-38 345.7 33.6 344 593-967 77-493 (558)
56 PRK08010 pyridine nucleotide-d 100.0 1.5E-33 3.2E-38 342.8 36.1 346 595-968 3-399 (441)
57 TIGR01438 TGR thioredoxin and 100.0 8.4E-34 1.8E-38 344.2 33.8 372 43-444 2-464 (484)
58 PTZ00052 thioredoxin reductase 100.0 2.3E-33 5E-38 342.2 37.7 372 43-444 5-474 (499)
59 PTZ00058 glutathione reductase 100.0 2.7E-33 5.8E-38 340.4 37.7 358 593-967 46-518 (561)
60 PTZ00153 lipoamide dehydrogena 100.0 3E-33 6.6E-38 343.4 37.5 373 43-444 116-646 (659)
61 PRK06416 dihydrolipoamide dehy 100.0 3.6E-33 7.8E-38 341.9 37.9 347 594-967 3-413 (462)
62 TIGR03452 mycothione_red mycot 100.0 4.2E-33 9.2E-38 337.1 38.0 370 43-444 2-445 (452)
63 PRK14694 putative mercuric red 100.0 5.8E-33 1.3E-37 339.0 38.5 348 592-967 3-414 (468)
64 TIGR02053 MerA mercuric reduct 100.0 4.1E-33 8.9E-38 341.1 36.4 344 596-967 1-409 (463)
65 PRK06912 acoL dihydrolipoamide 100.0 5.1E-33 1.1E-37 338.4 36.6 372 45-444 2-444 (458)
66 PTZ00318 NADH dehydrogenase-li 100.0 6.1E-34 1.3E-38 342.4 28.0 305 593-917 8-358 (424)
67 PRK07845 flavoprotein disulfid 100.0 3.8E-33 8.3E-38 339.4 34.8 347 595-968 1-418 (466)
68 TIGR01423 trypano_reduc trypan 100.0 4.8E-33 1E-37 336.0 34.6 345 594-967 2-432 (486)
69 PRK06292 dihydrolipoamide dehy 100.0 2.9E-33 6.2E-38 343.0 33.1 376 42-444 2-446 (460)
70 KOG0405|consensus 100.0 2.1E-33 4.5E-38 293.2 25.7 381 40-444 17-468 (478)
71 PRK07846 mycothione reductase; 100.0 9.6E-33 2.1E-37 333.4 35.0 343 596-968 2-407 (451)
72 PRK13748 putative mercuric red 100.0 2.9E-32 6.3E-37 342.6 39.2 347 594-968 97-508 (561)
73 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.1E-32 4.5E-37 332.0 36.4 352 609-967 1-383 (427)
74 PRK07251 pyridine nucleotide-d 100.0 2.6E-32 5.6E-37 331.5 36.0 343 595-967 3-397 (438)
75 PRK14727 putative mercuric red 100.0 2.5E-32 5.3E-37 333.5 35.6 347 594-967 15-425 (479)
76 PRK09853 putative selenate red 100.0 1.3E-33 2.9E-38 352.2 24.4 378 511-921 431-856 (1019)
77 KOG0405|consensus 100.0 5.7E-33 1.2E-37 289.9 24.7 349 593-968 18-434 (478)
78 TIGR01350 lipoamide_DH dihydro 100.0 5.6E-32 1.2E-36 332.1 37.7 379 43-444 1-447 (461)
79 PRK05976 dihydrolipoamide dehy 100.0 4.1E-32 8.9E-37 332.3 35.7 351 594-967 3-423 (472)
80 PRK06115 dihydrolipoamide dehy 100.0 7.3E-32 1.6E-36 328.2 36.8 347 595-967 3-417 (466)
81 TIGR03169 Nterm_to_SelD pyridi 100.0 8.4E-33 1.8E-37 328.8 27.4 291 1068-1377 1-309 (364)
82 PRK07818 dihydrolipoamide dehy 100.0 1.1E-31 2.5E-36 327.9 36.5 344 595-967 4-417 (466)
83 TIGR01438 TGR thioredoxin and 100.0 8.7E-32 1.9E-36 326.6 33.6 347 595-967 2-429 (484)
84 PRK06912 acoL dihydrolipoamide 100.0 1.9E-31 4.2E-36 324.6 36.7 344 597-967 2-409 (458)
85 TIGR03452 mycothione_red mycot 100.0 4.6E-31 9.9E-36 319.4 37.9 344 595-968 2-410 (452)
86 TIGR01350 lipoamide_DH dihydro 100.0 4.1E-31 9E-36 324.4 37.3 348 595-967 1-412 (461)
87 TIGR03169 Nterm_to_SelD pyridi 100.0 4.9E-32 1.1E-36 322.2 28.1 292 597-907 1-310 (364)
88 PRK12831 putative oxidoreducta 100.0 1.6E-32 3.6E-37 331.1 23.7 337 538-905 83-458 (464)
89 PTZ00153 lipoamide dehydrogena 100.0 4.2E-31 9.2E-36 324.6 34.8 281 662-968 248-612 (659)
90 PRK06327 dihydrolipoamide dehy 100.0 1.1E-30 2.4E-35 319.2 37.5 348 595-967 4-426 (475)
91 TIGR01316 gltA glutamate synth 100.0 2.2E-32 4.7E-37 330.1 22.0 339 539-905 72-447 (449)
92 PTZ00052 thioredoxin reductase 100.0 7.4E-31 1.6E-35 320.3 35.4 344 595-967 5-439 (499)
93 PRK06292 dihydrolipoamide dehy 100.0 9.2E-31 2E-35 320.9 34.2 343 595-967 3-411 (460)
94 KOG1346|consensus 100.0 1.8E-30 3.9E-35 276.4 23.2 332 41-378 176-544 (659)
95 KOG1335|consensus 100.0 1.9E-30 4.2E-35 274.9 22.7 347 594-968 38-457 (506)
96 COG0446 HcaD Uncharacterized N 100.0 3.4E-29 7.3E-34 306.6 35.6 363 1069-1439 1-374 (415)
97 PRK12779 putative bifunctional 100.0 2.3E-30 4.9E-35 331.9 25.7 349 539-923 244-639 (944)
98 PRK09853 putative selenate red 100.0 6.3E-30 1.4E-34 319.5 27.6 336 5-369 495-856 (1019)
99 TIGR03315 Se_ygfK putative sel 100.0 3.6E-30 7.7E-35 324.2 24.0 333 539-907 481-839 (1012)
100 TIGR01292 TRX_reduct thioredox 100.0 1.1E-29 2.3E-34 295.5 24.7 278 596-905 1-298 (300)
101 TIGR03140 AhpF alkyl hydropero 100.0 5.4E-30 1.2E-34 315.0 22.1 282 593-905 210-510 (515)
102 PRK10262 thioredoxin reductase 100.0 9.6E-30 2.1E-34 296.3 22.3 290 593-905 4-312 (321)
103 PRK12831 putative oxidoreducta 100.0 1.7E-29 3.8E-34 304.8 25.1 284 1063-1376 137-458 (464)
104 TIGR01316 gltA glutamate synth 100.0 1E-29 2.2E-34 307.0 22.8 280 1064-1375 131-446 (449)
105 COG0492 TrxB Thioredoxin reduc 100.0 1.4E-29 3.1E-34 282.2 22.2 284 594-905 2-298 (305)
106 PRK12775 putative trifunctiona 100.0 1.2E-29 2.7E-34 328.7 23.3 336 539-905 375-752 (1006)
107 COG0492 TrxB Thioredoxin reduc 100.0 3.3E-29 7.1E-34 279.3 22.3 286 42-353 2-298 (305)
108 PRK15317 alkyl hydroperoxide r 100.0 4.3E-29 9.3E-34 307.7 25.6 282 593-905 209-509 (517)
109 PRK12778 putative bifunctional 100.0 1.9E-29 4.2E-34 324.1 23.2 336 539-905 373-747 (752)
110 PRK11749 dihydropyrimidine deh 100.0 2.4E-29 5.2E-34 306.2 22.1 287 590-905 135-449 (457)
111 KOG4716|consensus 100.0 9.2E-29 2E-33 257.1 22.7 390 33-445 9-485 (503)
112 TIGR01292 TRX_reduct thioredox 100.0 2E-28 4.3E-33 284.8 26.6 275 1067-1375 1-297 (300)
113 TIGR03140 AhpF alkyl hydropero 100.0 1.3E-28 2.8E-33 302.9 25.2 284 1064-1376 210-510 (515)
114 PRK10262 thioredoxin reductase 100.0 1.1E-28 2.4E-33 287.4 23.3 295 40-353 3-312 (321)
115 PRK12810 gltD glutamate syntha 100.0 5E-29 1.1E-33 303.3 19.3 338 540-905 89-462 (471)
116 PRK12814 putative NADPH-depend 100.0 2.3E-28 5E-33 306.9 22.4 333 540-905 139-498 (652)
117 TIGR03143 AhpF_homolog putativ 100.0 6.6E-28 1.4E-32 298.5 25.1 279 594-904 3-305 (555)
118 TIGR03315 Se_ygfK putative sel 100.0 1.3E-27 2.8E-32 301.1 27.3 323 5-356 493-840 (1012)
119 KOG4716|consensus 100.0 1.2E-27 2.5E-32 249.0 21.8 362 585-968 9-450 (503)
120 PRK15317 alkyl hydroperoxide r 100.0 2.5E-27 5.5E-32 292.0 28.4 282 1064-1376 209-509 (517)
121 PRK12770 putative glutamate sy 100.0 2.2E-27 4.9E-32 279.1 25.6 286 594-905 17-347 (352)
122 TIGR01318 gltD_gamma_fam gluta 100.0 9.4E-28 2E-32 290.5 22.6 335 539-905 84-463 (467)
123 PRK12769 putative oxidoreducta 100.0 1.7E-27 3.8E-32 301.2 22.6 335 539-905 270-649 (654)
124 PRK12779 putative bifunctional 100.0 4.1E-27 8.9E-32 302.0 25.5 283 1065-1377 305-625 (944)
125 PRK12770 putative glutamate sy 100.0 4.2E-27 9.1E-32 276.7 23.2 285 1065-1376 17-347 (352)
126 PRK11749 dihydropyrimidine deh 100.0 6.1E-27 1.3E-31 285.1 25.1 318 6-354 99-450 (457)
127 TIGR03143 AhpF_homolog putativ 99.9 1.1E-26 2.4E-31 287.5 27.0 279 1065-1375 3-305 (555)
128 PRK12778 putative bifunctional 99.9 4.6E-27 9.9E-32 302.2 24.3 281 1064-1376 429-747 (752)
129 TIGR01317 GOGAT_sm_gam glutama 99.9 2.7E-27 5.8E-32 287.6 20.9 338 540-905 89-476 (485)
130 KOG2495|consensus 99.9 1E-26 2.3E-31 252.1 18.5 296 590-904 50-393 (491)
131 PRK12809 putative oxidoreducta 99.9 1.2E-26 2.6E-31 291.7 21.2 335 539-905 253-632 (639)
132 PRK12810 gltD glutamate syntha 99.9 3E-26 6.4E-31 279.1 23.4 288 1064-1376 141-462 (471)
133 PRK12775 putative trifunctiona 99.9 3.2E-26 7E-31 297.0 24.4 322 5-355 389-754 (1006)
134 TIGR01318 gltD_gamma_fam gluta 99.9 6.9E-26 1.5E-30 274.3 24.9 319 5-353 98-463 (467)
135 PRK13984 putative oxidoreducta 99.9 2.9E-26 6.4E-31 289.1 21.2 333 537-905 225-599 (604)
136 COG3634 AhpF Alkyl hydroperoxi 99.9 3.6E-27 7.8E-32 246.2 10.3 291 592-904 208-511 (520)
137 PRK12814 putative NADPH-depend 99.9 8.8E-26 1.9E-30 283.7 24.1 281 1065-1376 192-498 (652)
138 COG0446 HcaD Uncharacterized N 99.9 1.2E-24 2.6E-29 266.4 32.9 329 598-933 1-337 (415)
139 PRK12769 putative oxidoreducta 99.9 2.6E-25 5.7E-30 281.4 26.7 320 5-353 284-649 (654)
140 PLN02852 ferredoxin-NADP+ redu 99.9 6.6E-25 1.4E-29 260.1 24.6 293 592-906 23-420 (491)
141 TIGR01317 GOGAT_sm_gam glutama 99.9 5.2E-25 1.1E-29 267.5 23.2 285 1065-1376 142-476 (485)
142 KOG2495|consensus 99.9 8E-25 1.7E-29 237.5 19.9 294 1063-1375 52-393 (491)
143 PRK12809 putative oxidoreducta 99.9 1.8E-24 3.8E-29 272.2 25.0 320 5-353 267-632 (639)
144 KOG0404|consensus 99.9 1.2E-24 2.7E-29 213.5 17.8 288 43-350 8-313 (322)
145 COG3634 AhpF Alkyl hydroperoxi 99.9 1.5E-25 3.4E-30 234.1 11.4 288 41-350 209-509 (520)
146 KOG0404|consensus 99.9 1.3E-24 2.8E-29 213.4 16.8 269 594-875 7-296 (322)
147 PRK12771 putative glutamate sy 99.9 2E-24 4.3E-29 269.4 21.2 332 539-904 83-440 (564)
148 PLN02852 ferredoxin-NADP+ redu 99.9 9.6E-24 2.1E-28 250.2 23.8 292 1064-1377 24-420 (491)
149 PRK13984 putative oxidoreducta 99.9 5.4E-24 1.2E-28 268.5 23.0 279 1064-1375 281-598 (604)
150 TIGR01372 soxA sarcosine oxida 99.9 4E-23 8.6E-28 271.1 27.2 278 594-904 162-468 (985)
151 TIGR01372 soxA sarcosine oxida 99.9 2.7E-22 5.8E-27 263.4 27.6 279 1065-1375 162-468 (985)
152 PRK12771 putative glutamate sy 99.9 1.1E-21 2.3E-26 244.9 24.0 279 1064-1375 135-440 (564)
153 PLN02172 flavin-containing mon 99.9 6.2E-21 1.4E-25 228.5 22.9 279 592-907 7-352 (461)
154 PLN02172 flavin-containing mon 99.9 3E-21 6.4E-26 231.2 19.7 278 1064-1379 8-353 (461)
155 COG0493 GltD NADPH-dependent g 99.9 8.1E-22 1.8E-26 231.2 13.3 338 540-904 67-447 (457)
156 KOG0399|consensus 99.8 4.5E-21 9.7E-26 225.8 13.2 363 507-904 1679-2116(2142)
157 PRK06567 putative bifunctional 99.8 2.4E-20 5.2E-25 229.7 18.8 267 591-904 379-766 (1028)
158 KOG3851|consensus 99.8 2.7E-20 5.9E-25 193.2 11.6 295 1063-1375 36-357 (446)
159 KOG2755|consensus 99.8 1.2E-19 2.6E-24 183.7 12.7 267 1068-1346 1-323 (334)
160 PF00743 FMO-like: Flavin-bind 99.8 5.6E-19 1.2E-23 214.0 19.3 283 1067-1379 2-397 (531)
161 COG1148 HdrA Heterodisulfide r 99.8 6.3E-19 1.4E-23 193.8 17.4 359 511-903 36-540 (622)
162 PF00743 FMO-like: Flavin-bind 99.8 2.1E-18 4.6E-23 209.1 21.1 287 595-907 1-396 (531)
163 COG0493 GltD NADPH-dependent g 99.8 3.5E-18 7.5E-23 200.8 15.6 320 8-352 84-447 (457)
164 KOG2755|consensus 99.8 1.9E-18 4.2E-23 175.0 11.0 263 597-874 1-322 (334)
165 PRK06567 putative bifunctional 99.8 2.8E-17 6.1E-22 202.9 22.5 300 9-353 331-767 (1028)
166 PF07992 Pyr_redox_2: Pyridine 99.8 1.8E-19 3.9E-24 195.6 2.3 181 1068-1346 1-200 (201)
167 PF07992 Pyr_redox_2: Pyridine 99.7 3.8E-19 8.1E-24 193.0 3.8 181 597-875 1-200 (201)
168 COG1148 HdrA Heterodisulfide r 99.7 5.7E-17 1.2E-21 178.6 20.4 356 982-1375 36-541 (622)
169 KOG3851|consensus 99.7 8.6E-18 1.9E-22 174.8 13.2 297 591-904 35-357 (446)
170 KOG0399|consensus 99.7 2.5E-17 5.5E-22 194.7 14.2 316 14-353 1753-2117(2142)
171 TIGR02377 MocE_fam_FeS Rieske 99.6 1.7E-15 3.6E-20 140.8 10.1 76 495-570 23-99 (101)
172 PF14759 Reductase_C: Reductas 99.6 1.7E-15 3.7E-20 134.9 8.7 79 1386-1464 1-79 (85)
173 cd03478 Rieske_AIFL_N AIFL (ap 99.6 2.3E-15 5.1E-20 138.9 10.0 75 495-569 21-95 (95)
174 PF13738 Pyr_redox_3: Pyridine 99.6 4.7E-15 1E-19 161.0 13.2 163 599-768 1-201 (203)
175 PRK09965 3-phenylpropionate di 99.6 9.1E-15 2E-19 137.4 11.0 77 496-572 24-101 (106)
176 PTZ00188 adrenodoxin reductase 99.6 8.1E-14 1.8E-18 161.8 20.2 267 593-878 37-420 (506)
177 cd03528 Rieske_RO_ferredoxin R 99.6 1.3E-14 2.9E-19 135.3 10.5 76 495-570 22-97 (98)
178 PF13738 Pyr_redox_3: Pyridine 99.6 1.5E-14 3.2E-19 157.1 12.2 161 1070-1239 1-201 (203)
179 COG2146 {NirD} Ferredoxin subu 99.6 1.3E-14 2.8E-19 134.2 9.5 78 493-570 25-103 (106)
180 cd03530 Rieske_NirD_small_Baci 99.6 1.4E-14 3E-19 134.9 9.5 78 493-571 21-98 (98)
181 KOG1800|consensus 99.6 4.4E-14 9.6E-19 151.7 14.4 288 1064-1376 18-404 (468)
182 KOG1800|consensus 99.5 3.9E-14 8.4E-19 152.2 13.5 289 593-905 18-404 (468)
183 PRK09511 nirD nitrite reductas 99.5 3.3E-14 7.2E-19 132.8 9.9 75 495-570 25-106 (108)
184 KOG1399|consensus 99.5 8E-14 1.7E-18 163.1 14.8 230 594-843 5-278 (448)
185 PF00355 Rieske: Rieske [2Fe-2 99.5 4.3E-14 9.4E-19 131.7 8.9 73 494-566 23-97 (97)
186 COG2072 TrkA Predicted flavopr 99.5 1.2E-13 2.6E-18 165.4 14.0 171 592-769 5-210 (443)
187 cd03474 Rieske_T4moC Toluene-4 99.5 8.2E-14 1.8E-18 132.2 9.9 78 493-571 21-98 (108)
188 KOG1399|consensus 99.5 3.3E-13 7.2E-18 157.9 16.9 231 43-291 6-278 (448)
189 cd04337 Rieske_RO_Alpha_Cao Ca 99.5 8.5E-14 1.8E-18 135.0 9.7 80 493-573 38-121 (129)
190 cd03531 Rieske_RO_Alpha_KSH Th 99.5 8.7E-14 1.9E-18 132.5 9.0 79 493-572 22-106 (115)
191 COG2072 TrkA Predicted flavopr 99.5 1.9E-13 4E-18 163.7 13.8 167 1064-1238 6-208 (443)
192 cd04338 Rieske_RO_Alpha_Tic55 99.5 1.3E-13 2.8E-18 135.0 9.9 82 492-574 37-127 (134)
193 PF13434 K_oxygenase: L-lysine 99.5 3.6E-13 7.7E-18 155.1 14.9 233 595-833 2-340 (341)
194 cd03529 Rieske_NirD Assimilato 99.5 1.7E-13 3.8E-18 128.3 9.9 77 493-570 21-102 (103)
195 PF13434 K_oxygenase: L-lysine 99.5 2.8E-13 6E-18 156.0 13.2 235 43-281 2-340 (341)
196 PF13806 Rieske_2: Rieske-like 99.5 1.2E-13 2.5E-18 127.7 7.9 76 494-570 22-103 (104)
197 TIGR02378 nirD_assim_sml nitri 99.5 1.6E-13 3.4E-18 129.4 8.8 77 493-570 22-103 (105)
198 cd03537 Rieske_RO_Alpha_PrnD T 99.5 2.2E-13 4.7E-18 129.8 9.6 82 493-575 23-117 (123)
199 PTZ00188 adrenodoxin reductase 99.5 1.3E-12 2.7E-17 152.0 17.9 266 1065-1349 38-420 (506)
200 cd03532 Rieske_RO_Alpha_VanA_D 99.5 1.5E-13 3.2E-18 131.6 8.5 80 493-573 25-110 (116)
201 cd03476 Rieske_ArOX_small Smal 99.4 5.7E-13 1.2E-17 127.3 11.8 69 504-573 45-116 (126)
202 cd03473 Rieske_CMP_Neu5Ac_hydr 99.4 3.3E-13 7.2E-18 120.7 9.1 61 495-555 30-92 (107)
203 TIGR02377 MocE_fam_FeS Rieske 99.4 1.5E-13 3.2E-18 127.7 6.5 72 971-1043 29-100 (101)
204 cd03480 Rieske_RO_Alpha_PaO Ri 99.4 5.8E-13 1.3E-17 131.0 10.9 82 493-575 38-132 (138)
205 cd03471 Rieske_cytochrome_b6f 99.4 6.3E-13 1.4E-17 124.9 10.4 76 494-571 33-110 (126)
206 cd03479 Rieske_RO_Alpha_PhDO_l 99.4 6.3E-13 1.4E-17 132.2 10.0 81 493-574 43-132 (144)
207 cd03469 Rieske_RO_Alpha_N Ries 99.4 5.2E-13 1.1E-17 129.6 9.0 78 494-572 23-111 (118)
208 COG3486 IucD Lysine/ornithine 99.4 2.6E-11 5.6E-16 133.5 21.9 276 41-319 3-385 (436)
209 cd03467 Rieske Rieske domain; 99.4 1E-12 2.2E-17 122.6 9.5 73 493-565 21-93 (98)
210 TIGR02694 arsenite_ox_S arseni 99.4 2.2E-12 4.7E-17 123.3 11.5 68 503-571 47-116 (129)
211 PRK05329 anaerobic glycerol-3- 99.4 8.9E-12 1.9E-16 146.6 18.6 159 186-354 219-419 (422)
212 cd03548 Rieske_RO_Alpha_OMO_CA 99.4 2.1E-12 4.5E-17 127.2 10.8 79 495-573 36-124 (136)
213 cd03477 Rieske_YhfW_C YhfW fam 99.4 1.1E-12 2.4E-17 118.2 8.0 70 493-564 19-88 (91)
214 PRK05329 anaerobic glycerol-3- 99.4 6.4E-12 1.4E-16 147.8 15.6 160 737-906 218-419 (422)
215 COG3486 IucD Lysine/ornithine 99.3 1.5E-10 3.3E-15 127.5 24.0 277 593-874 3-388 (436)
216 cd03478 Rieske_AIFL_N AIFL (ap 99.3 1.3E-12 2.8E-17 120.7 5.6 66 974-1040 29-94 (95)
217 PRK09965 3-phenylpropionate di 99.3 1.7E-12 3.7E-17 122.0 6.4 71 974-1045 31-102 (106)
218 PRK09511 nirD nitrite reductas 99.3 1.5E-12 3.2E-17 121.8 5.8 68 974-1043 35-107 (108)
219 PLN02281 chlorophyllide a oxyg 99.3 7.2E-12 1.6E-16 145.3 11.7 81 493-574 241-325 (536)
220 cd03531 Rieske_RO_Alpha_KSH Th 99.3 3.9E-12 8.4E-17 121.2 6.0 90 955-1046 13-108 (115)
221 cd03528 Rieske_RO_ferredoxin R 99.3 6.5E-12 1.4E-16 117.2 6.0 67 975-1042 31-97 (98)
222 COG2146 {NirD} Ferredoxin subu 99.2 6.9E-12 1.5E-16 116.2 5.6 74 970-1044 31-105 (106)
223 PRK13474 cytochrome b6-f compl 99.2 3.2E-11 7E-16 123.1 10.2 77 493-571 84-162 (178)
224 cd03530 Rieske_NirD_small_Baci 99.2 1.1E-11 2.4E-16 115.3 6.2 70 971-1042 28-97 (98)
225 cd03529 Rieske_NirD Assimilato 99.2 8.6E-12 1.9E-16 116.8 5.3 71 970-1042 27-102 (103)
226 cd03474 Rieske_T4moC Toluene-4 99.2 1.2E-11 2.5E-16 117.5 6.1 73 971-1045 28-100 (108)
227 cd04338 Rieske_RO_Alpha_Tic55 99.2 1.2E-11 2.7E-16 121.1 6.1 84 961-1046 35-127 (134)
228 cd04337 Rieske_RO_Alpha_Cao Ca 99.2 1.4E-11 3E-16 119.6 6.2 86 958-1045 32-121 (129)
229 PLN00095 chlorophyllide a oxyg 99.2 3E-11 6.5E-16 133.4 8.6 80 493-573 94-179 (394)
230 PF13806 Rieske_2: Rieske-like 99.2 1.1E-11 2.5E-16 114.5 4.2 71 971-1043 29-104 (104)
231 cd03470 Rieske_cytochrome_bc1 99.2 6.6E-11 1.4E-15 113.2 9.5 66 504-570 59-124 (126)
232 cd03532 Rieske_RO_Alpha_VanA_D 99.2 1.4E-11 3.1E-16 117.9 4.9 79 965-1045 26-110 (116)
233 TIGR02378 nirD_assim_sml nitri 99.2 2E-11 4.3E-16 115.1 5.4 72 970-1043 28-104 (105)
234 cd03536 Rieske_RO_Alpha_DTDO T 99.2 7.4E-11 1.6E-15 114.0 9.4 81 492-573 21-115 (123)
235 PF00070 Pyr_redox: Pyridine n 99.2 1.6E-10 3.5E-15 102.9 10.8 80 736-818 1-80 (80)
236 cd03535 Rieske_RO_Alpha_NDO Ri 99.2 7.1E-11 1.5E-15 114.1 8.9 59 493-552 24-83 (123)
237 cd03541 Rieske_RO_Alpha_CMO Ri 99.2 1E-10 2.2E-15 111.0 9.6 77 493-570 23-109 (118)
238 PF00070 Pyr_redox: Pyridine n 99.2 2.2E-10 4.8E-15 102.0 11.1 80 184-266 1-80 (80)
239 PF00355 Rieske: Rieske [2Fe-2 99.2 3.1E-11 6.7E-16 112.5 5.3 68 970-1037 28-97 (97)
240 cd03545 Rieske_RO_Alpha_OHBDO_ 99.1 1.5E-10 3.2E-15 115.6 9.8 80 493-573 47-144 (150)
241 cd03472 Rieske_RO_Alpha_BPDO_l 99.1 1.3E-10 2.9E-15 112.5 8.8 77 492-569 29-118 (128)
242 cd03476 Rieske_ArOX_small Smal 99.1 6.7E-11 1.5E-15 113.2 6.4 68 975-1043 45-114 (126)
243 cd03537 Rieske_RO_Alpha_PrnD T 99.1 6.2E-11 1.3E-15 113.0 5.8 84 960-1045 19-115 (123)
244 cd03539 Rieske_RO_Alpha_S5H Th 99.1 2.1E-10 4.5E-15 111.4 9.2 79 493-572 22-122 (129)
245 cd03469 Rieske_RO_Alpha_N Ries 99.1 5.9E-11 1.3E-15 115.2 5.3 78 966-1045 24-112 (118)
246 cd03480 Rieske_RO_Alpha_PaO Ri 99.1 8.8E-11 1.9E-15 115.6 6.1 86 958-1045 32-130 (138)
247 COG2081 Predicted flavoprotein 99.1 2.6E-09 5.7E-14 118.6 17.9 108 594-704 2-170 (408)
248 TIGR02694 arsenite_ox_S arseni 99.1 1.2E-10 2.6E-15 111.4 5.8 68 974-1042 47-115 (129)
249 cd03473 Rieske_CMP_Neu5Ac_hydr 99.1 1E-10 2.2E-15 105.0 4.8 53 974-1026 38-92 (107)
250 cd03467 Rieske Rieske domain; 99.1 1.1E-10 2.5E-15 108.7 5.4 67 970-1036 27-93 (98)
251 cd03479 Rieske_RO_Alpha_PhDO_l 99.1 1.8E-10 3.9E-15 114.7 6.1 86 958-1045 37-131 (144)
252 cd03548 Rieske_RO_Alpha_OMO_CA 99.1 2.3E-10 4.9E-15 112.8 6.5 82 962-1045 33-124 (136)
253 PLN02518 pheophorbide a oxygen 99.0 5.6E-10 1.2E-14 133.4 9.8 82 493-575 111-208 (539)
254 cd03471 Rieske_cytochrome_b6f 99.0 3.5E-10 7.6E-15 106.6 6.3 69 973-1044 41-111 (126)
255 cd03542 Rieske_RO_Alpha_HBDO R 99.0 3.6E-10 7.7E-15 108.5 5.9 67 493-561 22-89 (123)
256 cd03477 Rieske_YhfW_C YhfW fam 99.0 2.6E-10 5.6E-15 102.8 4.4 62 971-1034 26-87 (91)
257 cd03475 Rieske_SoxF_SoxL SoxF 99.0 1.3E-09 2.9E-14 107.4 9.2 71 504-574 74-162 (171)
258 COG4529 Uncharacterized protei 99.0 5.2E-08 1.1E-12 111.5 22.4 170 1066-1238 1-231 (474)
259 cd03538 Rieske_RO_Alpha_AntDO 98.9 2.4E-09 5.2E-14 106.5 9.1 60 493-553 44-105 (146)
260 PLN00095 chlorophyllide a oxyg 98.9 2.1E-09 4.6E-14 119.1 5.8 89 955-1045 85-179 (394)
261 PLN02281 chlorophyllide a oxyg 98.9 2.3E-09 4.9E-14 124.9 6.0 84 960-1045 237-324 (536)
262 TIGR03378 glycerol3P_GlpB glyc 98.8 2.8E-07 6.2E-12 106.9 21.2 148 1219-1375 237-419 (419)
263 cd03470 Rieske_cytochrome_bc1 98.8 6.2E-09 1.3E-13 99.7 5.9 68 974-1042 58-125 (126)
264 COG2081 Predicted flavoprotein 98.8 4.6E-08 9.9E-13 108.9 12.9 82 197-281 84-166 (408)
265 COG4638 HcaE Phenylpropionate 98.8 9.3E-09 2E-13 121.9 8.1 85 491-576 46-141 (367)
266 cd03535 Rieske_RO_Alpha_NDO Ri 98.8 8E-09 1.7E-13 99.9 5.5 74 971-1045 31-117 (123)
267 PRK13474 cytochrome b6-f compl 98.8 9E-09 1.9E-13 105.3 6.1 68 974-1044 94-163 (178)
268 cd03541 Rieske_RO_Alpha_CMO Ri 98.8 1E-08 2.2E-13 97.5 5.8 74 970-1045 29-112 (118)
269 COG4529 Uncharacterized protei 98.7 8.1E-07 1.8E-11 101.9 21.5 170 595-767 1-231 (474)
270 TIGR01416 Rieske_proteo ubiqui 98.7 2.7E-08 5.8E-13 101.4 8.3 67 503-570 104-172 (174)
271 cd03545 Rieske_RO_Alpha_OHBDO_ 98.7 1.5E-08 3.3E-13 101.1 5.6 74 971-1046 54-145 (150)
272 cd03536 Rieske_RO_Alpha_DTDO T 98.7 1.7E-08 3.7E-13 97.6 5.7 74 971-1046 29-116 (123)
273 PRK09897 hypothetical protein; 98.7 1.5E-07 3.2E-12 114.4 15.1 167 1066-1239 1-246 (534)
274 cd03472 Rieske_RO_Alpha_BPDO_l 98.7 2E-08 4.2E-13 97.5 5.3 74 971-1046 37-123 (128)
275 COG3075 GlpB Anaerobic glycero 98.7 1.7E-07 3.6E-12 100.0 12.0 128 1244-1377 255-416 (421)
276 PRK09897 hypothetical protein; 98.6 3E-07 6.4E-12 111.8 14.9 155 595-756 1-213 (534)
277 TIGR03378 glycerol3P_GlpB glyc 98.6 2.7E-06 5.9E-11 98.9 22.0 145 751-904 240-419 (419)
278 cd03539 Rieske_RO_Alpha_S5H Th 98.6 3.8E-08 8.2E-13 95.6 5.5 73 972-1046 30-124 (129)
279 COG0723 QcrA Rieske Fe-S prote 98.6 7.1E-08 1.5E-12 100.3 7.4 67 506-573 100-167 (177)
280 cd03542 Rieske_RO_Alpha_HBDO R 98.6 8.7E-08 1.9E-12 92.1 5.8 62 971-1034 29-91 (123)
281 PLN02518 pheophorbide a oxygen 98.5 8.4E-08 1.8E-12 115.0 6.4 89 955-1045 102-206 (539)
282 TIGR03228 anthran_1_2_A anthra 98.5 1.5E-07 3.3E-12 110.2 8.3 80 492-572 59-150 (438)
283 PF03486 HI0933_like: HI0933-l 98.5 1.4E-07 3E-12 111.1 7.7 106 596-703 1-166 (409)
284 cd03475 Rieske_SoxF_SoxL SoxF 98.5 1.5E-07 3.3E-12 93.1 6.0 62 975-1036 74-151 (171)
285 TIGR03229 benzo_1_2_benA benzo 98.5 3.6E-07 7.8E-12 107.4 9.1 60 492-552 59-119 (433)
286 cd03538 Rieske_RO_Alpha_AntDO 98.5 1.7E-07 3.6E-12 93.4 5.2 75 969-1045 49-140 (146)
287 COG3075 GlpB Anaerobic glycero 98.3 7.5E-06 1.6E-10 87.7 14.1 127 774-906 256-416 (421)
288 PRK08401 L-aspartate oxidase; 98.3 3.6E-06 7.8E-11 103.0 12.1 54 297-353 310-364 (466)
289 TIGR00551 nadB L-aspartate oxi 98.3 1.1E-05 2.5E-10 99.4 15.6 54 849-905 333-387 (488)
290 PRK07804 L-aspartate oxidase; 98.2 1E-05 2.2E-10 100.7 15.1 36 41-76 14-49 (541)
291 PRK08401 L-aspartate oxidase; 98.2 5.9E-06 1.3E-10 101.2 12.6 54 849-905 310-364 (466)
292 PRK12842 putative succinate de 98.2 1.1E-06 2.4E-11 110.4 6.3 102 733-835 156-276 (574)
293 PRK04176 ribulose-1,5-biphosph 98.2 3.1E-06 6.8E-11 93.9 9.1 109 592-702 22-172 (257)
294 TIGR03171 soxL2 Rieske iron-su 98.2 2.1E-06 4.6E-11 92.5 7.2 69 504-572 175-277 (321)
295 PF14721 AIF_C: Apoptosis-indu 98.2 5.2E-06 1.1E-10 75.5 8.5 81 1370-1450 1-132 (133)
296 PLN02463 lycopene beta cyclase 98.2 2.8E-06 6.1E-11 102.0 9.2 114 39-152 24-170 (447)
297 COG0029 NadB Aspartate oxidase 98.2 1.2E-05 2.5E-10 92.2 13.1 55 298-355 342-397 (518)
298 TIGR00551 nadB L-aspartate oxi 98.2 1.1E-05 2.3E-10 99.7 14.1 55 297-354 333-388 (488)
299 TIGR01416 Rieske_proteo ubiqui 98.2 1.2E-06 2.6E-11 89.4 4.5 67 974-1041 104-172 (174)
300 PLN02463 lycopene beta cyclase 98.2 6.8E-06 1.5E-10 98.7 11.5 112 590-704 23-170 (447)
301 PRK07804 L-aspartate oxidase; 98.2 2.5E-05 5.4E-10 97.3 16.4 35 594-630 15-49 (541)
302 PRK06847 hypothetical protein; 98.2 7.8E-06 1.7E-10 98.2 11.3 109 594-704 3-164 (375)
303 PRK09231 fumarate reductase fl 98.1 3.4E-05 7.4E-10 96.8 16.2 56 848-905 357-412 (582)
304 PF01266 DAO: FAD dependent ox 98.1 1.1E-06 2.3E-11 105.3 2.7 67 1246-1315 146-212 (358)
305 TIGR02032 GG-red-SF geranylger 98.1 7.1E-06 1.5E-10 95.0 9.4 106 596-703 1-148 (295)
306 COG4638 HcaE Phenylpropionate 98.1 2.1E-06 4.6E-11 101.8 4.8 89 957-1047 41-140 (367)
307 TIGR01176 fum_red_Fp fumarate 98.1 3.8E-05 8.3E-10 96.0 16.0 55 849-905 357-411 (580)
308 PRK06175 L-aspartate oxidase; 98.1 3.7E-05 8E-10 93.0 15.3 54 849-905 331-385 (433)
309 PF14759 Reductase_C: Reductas 98.1 1.8E-05 3.9E-10 70.8 9.2 69 363-432 1-69 (85)
310 COG0029 NadB Aspartate oxidase 98.1 3.3E-05 7.1E-10 88.7 13.4 56 850-907 342-397 (518)
311 TIGR01812 sdhA_frdA_Gneg succi 98.1 6.7E-05 1.4E-09 94.8 17.6 55 849-905 342-400 (566)
312 PRK06847 hypothetical protein; 98.1 1.2E-05 2.7E-10 96.5 10.2 106 1066-1174 4-163 (375)
313 PRK10157 putative oxidoreducta 98.1 1.3E-05 2.9E-10 97.0 10.4 108 594-703 4-164 (428)
314 PRK04176 ribulose-1,5-biphosph 98.0 7.7E-05 1.7E-09 82.9 15.3 166 1205-1376 25-252 (257)
315 COG0579 Predicted dehydrogenas 98.0 8.2E-05 1.8E-09 86.8 16.0 68 224-293 153-221 (429)
316 TIGR00292 thiazole biosynthesi 98.0 6.6E-05 1.4E-09 83.0 14.6 166 1205-1376 21-251 (254)
317 PRK05945 sdhA succinate dehydr 98.0 2.5E-05 5.4E-10 98.2 12.8 36 595-630 3-38 (575)
318 PRK06263 sdhA succinate dehydr 98.0 4E-05 8.7E-10 95.9 14.1 55 849-906 348-402 (543)
319 COG0644 FixC Dehydrogenases (f 98.0 1.2E-05 2.6E-10 96.5 9.0 111 42-152 2-153 (396)
320 PRK08275 putative oxidoreducta 98.0 4.7E-05 1E-09 95.4 14.5 46 298-353 357-402 (554)
321 PRK06175 L-aspartate oxidase; 98.0 6.3E-05 1.4E-09 91.0 15.0 54 1320-1376 331-385 (433)
322 TIGR03329 Phn_aa_oxid putative 98.0 5.2E-06 1.1E-10 101.9 5.7 54 223-280 182-235 (460)
323 PRK12842 putative succinate de 98.0 5E-06 1.1E-10 104.6 5.6 102 1204-1306 156-276 (574)
324 COG0644 FixC Dehydrogenases (f 98.0 1.7E-05 3.6E-10 95.3 9.8 109 594-704 2-153 (396)
325 PRK09231 fumarate reductase fl 98.0 5.7E-05 1.2E-09 94.8 14.8 54 1319-1376 357-412 (582)
326 COG1233 Phytoene dehydrogenase 98.0 1.5E-05 3.2E-10 98.0 9.2 56 1247-1303 224-279 (487)
327 PRK12409 D-amino acid dehydrog 98.0 5.5E-05 1.2E-09 92.0 14.2 57 1247-1305 197-258 (410)
328 PRK06263 sdhA succinate dehydr 98.0 5.6E-05 1.2E-09 94.6 14.5 54 297-354 348-402 (543)
329 PRK10157 putative oxidoreducta 98.0 1.8E-05 3.9E-10 95.9 9.8 36 42-77 4-39 (428)
330 PRK09077 L-aspartate oxidase; 98.0 0.00033 7.2E-09 87.3 21.1 54 297-354 353-408 (536)
331 COG0579 Predicted dehydrogenas 98.0 2.6E-05 5.6E-10 90.9 10.4 201 594-847 2-223 (429)
332 PRK10015 oxidoreductase; Provi 98.0 2.3E-05 5E-10 94.8 10.4 107 594-702 4-163 (429)
333 PRK05945 sdhA succinate dehydr 98.0 3.7E-05 8.1E-10 96.7 12.5 34 42-75 2-37 (575)
334 PF04820 Trp_halogenase: Trypt 98.0 2.5E-05 5.5E-10 94.6 10.5 206 1068-1306 1-212 (454)
335 PRK08275 putative oxidoreducta 98.0 8.8E-05 1.9E-09 93.0 15.7 38 594-631 8-45 (554)
336 COG1635 THI4 Ribulose 1,5-bisp 98.0 2.1E-05 4.7E-10 79.7 8.0 39 594-634 29-67 (262)
337 PRK13977 myosin-cross-reactive 98.0 6.8E-05 1.5E-09 90.2 13.5 90 192-282 192-293 (576)
338 PF03486 HI0933_like: HI0933-l 98.0 3.6E-05 7.9E-10 90.9 11.1 97 1207-1304 2-165 (409)
339 COG0723 QcrA Rieske Fe-S prote 98.0 8.2E-06 1.8E-10 84.9 5.0 65 977-1042 100-165 (177)
340 TIGR01176 fum_red_Fp fumarate 97.9 9.8E-05 2.1E-09 92.4 15.4 54 1320-1376 357-411 (580)
341 TIGR01812 sdhA_frdA_Gneg succi 97.9 0.00016 3.5E-09 91.3 17.4 54 297-353 342-400 (566)
342 TIGR02734 crtI_fam phytoene de 97.9 8.7E-06 1.9E-10 101.6 5.9 56 1247-1303 219-274 (502)
343 PRK06834 hypothetical protein; 97.9 3.7E-05 8E-10 94.5 11.3 110 594-705 2-158 (488)
344 PRK06452 sdhA succinate dehydr 97.9 7.1E-05 1.5E-09 93.7 13.9 34 42-75 4-37 (566)
345 PRK13977 myosin-cross-reactive 97.9 0.0001 2.2E-09 88.7 14.6 88 744-835 192-294 (576)
346 PRK13800 putative oxidoreducta 97.9 7.2E-05 1.6E-09 98.9 14.7 35 42-76 12-46 (897)
347 TIGR02032 GG-red-SF geranylger 97.9 2.1E-05 4.5E-10 91.1 8.7 104 1067-1173 1-147 (295)
348 PRK06069 sdhA succinate dehydr 97.9 8.8E-05 1.9E-09 93.5 14.8 34 595-630 5-41 (577)
349 PF01266 DAO: FAD dependent ox 97.9 5.3E-05 1.1E-09 90.6 12.3 67 775-844 146-212 (358)
350 PRK06854 adenylylsulfate reduc 97.9 5.2E-05 1.1E-09 95.5 12.4 34 595-630 11-46 (608)
351 PRK07843 3-ketosteroid-delta-1 97.9 1.1E-05 2.3E-10 100.9 6.3 107 733-841 159-277 (557)
352 PRK08205 sdhA succinate dehydr 97.9 0.00029 6.3E-09 88.7 18.7 32 42-74 4-35 (583)
353 PRK10015 oxidoreductase; Provi 97.9 3.2E-05 6.9E-10 93.6 9.7 36 42-77 4-39 (429)
354 COG0654 UbiH 2-polyprenyl-6-me 97.9 0.00014 3.1E-09 87.2 15.3 57 1248-1306 105-163 (387)
355 PRK11728 hydroxyglutarate oxid 97.9 0.00015 3.2E-09 87.5 15.4 65 1246-1314 148-212 (393)
356 COG2509 Uncharacterized FAD-de 97.9 0.00017 3.6E-09 81.9 14.4 84 751-835 148-231 (486)
357 PRK06069 sdhA succinate dehydr 97.9 0.00011 2.3E-09 92.7 14.7 54 297-353 352-412 (577)
358 PF01134 GIDA: Glucose inhibit 97.9 2.6E-05 5.6E-10 89.7 8.2 101 597-701 1-150 (392)
359 PLN02697 lycopene epsilon cycl 97.9 3.6E-05 7.8E-10 93.9 10.0 109 592-703 105-248 (529)
360 PRK07395 L-aspartate oxidase; 97.9 9.2E-05 2E-09 92.1 13.7 54 849-904 347-400 (553)
361 PRK07395 L-aspartate oxidase; 97.9 0.0001 2.2E-09 91.7 14.0 53 297-352 347-400 (553)
362 COG3380 Predicted NAD/FAD-depe 97.9 2E-05 4.4E-10 82.4 6.4 34 1067-1102 2-35 (331)
363 TIGR01790 carotene-cycl lycope 97.9 2.9E-05 6.2E-10 93.7 8.9 107 45-151 1-141 (388)
364 PRK06834 hypothetical protein; 97.9 4.5E-05 9.8E-10 93.7 10.5 111 42-152 2-157 (488)
365 PRK08773 2-octaprenyl-3-methyl 97.9 3.6E-05 7.7E-10 92.9 9.4 112 41-152 4-170 (392)
366 PLN02697 lycopene epsilon cycl 97.9 4.4E-05 9.6E-10 93.1 10.1 34 41-74 106-139 (529)
367 PRK08071 L-aspartate oxidase; 97.9 0.00014 3E-09 90.0 14.6 54 297-354 332-387 (510)
368 PLN02815 L-aspartate oxidase 97.9 0.0006 1.3E-08 85.2 20.2 54 849-905 377-431 (594)
369 PRK09077 L-aspartate oxidase; 97.9 0.0011 2.3E-08 82.9 22.5 55 849-906 353-408 (536)
370 PRK08071 L-aspartate oxidase; 97.9 9.9E-05 2.1E-09 91.3 13.3 55 849-906 332-387 (510)
371 PRK06452 sdhA succinate dehydr 97.9 9.9E-05 2.1E-09 92.4 13.4 54 849-905 346-401 (566)
372 PLN02815 L-aspartate oxidase 97.9 0.00039 8.5E-09 86.8 18.3 54 297-353 377-431 (594)
373 PRK07190 hypothetical protein; 97.9 6.4E-05 1.4E-09 92.3 11.2 108 594-703 4-165 (487)
374 PRK07190 hypothetical protein; 97.9 5.1E-05 1.1E-09 93.1 10.4 111 41-151 3-165 (487)
375 TIGR00292 thiazole biosynthesi 97.8 0.00029 6.2E-09 78.0 15.2 167 183-354 22-252 (254)
376 TIGR01790 carotene-cycl lycope 97.8 4.5E-05 9.8E-10 92.0 9.8 104 597-703 1-141 (388)
377 PRK06854 adenylylsulfate reduc 97.8 0.00012 2.6E-09 92.3 13.7 34 42-75 10-45 (608)
378 PRK06184 hypothetical protein; 97.8 5.1E-05 1.1E-09 94.5 10.4 36 42-77 2-37 (502)
379 TIGR02061 aprA adenosine phosp 97.8 0.00013 2.9E-09 90.9 13.8 31 45-75 1-35 (614)
380 PRK07045 putative monooxygenas 97.8 6.4E-05 1.4E-09 90.6 10.7 107 594-702 4-164 (388)
381 PRK08773 2-octaprenyl-3-methyl 97.8 5.6E-05 1.2E-09 91.2 10.2 109 594-704 5-170 (392)
382 PRK06184 hypothetical protein; 97.8 5.9E-05 1.3E-09 94.0 10.6 107 595-703 3-168 (502)
383 PRK07843 3-ketosteroid-delta-1 97.8 2.8E-05 6.2E-10 97.2 7.7 105 1205-1311 160-276 (557)
384 PRK08205 sdhA succinate dehydr 97.8 0.00044 9.6E-09 87.1 18.3 32 595-629 5-36 (583)
385 COG0654 UbiH 2-polyprenyl-6-me 97.8 0.00023 4.9E-09 85.4 15.1 56 776-833 104-161 (387)
386 PRK07333 2-octaprenyl-6-methox 97.8 4.8E-05 1E-09 92.4 9.4 111 595-705 1-169 (403)
387 PF13454 NAD_binding_9: FAD-NA 97.8 9.2E-05 2E-09 75.7 9.9 33 1070-1102 1-36 (156)
388 TIGR01373 soxB sarcosine oxida 97.8 0.00035 7.7E-09 84.8 16.7 57 1247-1304 183-239 (407)
389 TIGR03229 benzo_1_2_benA benzo 97.8 2.2E-05 4.8E-10 92.6 5.6 75 970-1045 66-155 (433)
390 PRK06134 putative FAD-binding 97.8 0.00018 3.9E-09 90.6 14.0 101 734-835 161-279 (581)
391 PRK08163 salicylate hydroxylas 97.8 0.0002 4.4E-09 86.6 14.1 56 778-835 111-167 (396)
392 PRK13800 putative oxidoreducta 97.8 0.00014 3E-09 96.3 13.3 35 594-630 12-46 (897)
393 PF04820 Trp_halogenase: Trypt 97.8 0.00012 2.7E-09 88.6 11.9 59 776-835 154-212 (454)
394 PRK05192 tRNA uridine 5-carbox 97.8 7.8E-05 1.7E-09 90.7 9.9 34 594-629 3-36 (618)
395 TIGR01373 soxB sarcosine oxida 97.8 0.00041 8.8E-09 84.2 16.3 56 777-833 184-239 (407)
396 PRK07364 2-octaprenyl-6-methox 97.8 8.2E-05 1.8E-09 90.7 10.2 38 591-630 14-51 (415)
397 PRK05192 tRNA uridine 5-carbox 97.8 6.8E-05 1.5E-09 91.3 9.2 34 42-75 3-36 (618)
398 PTZ00383 malate:quinone oxidor 97.8 0.00023 5E-09 86.6 13.8 66 1247-1315 211-282 (497)
399 PRK11728 hydroxyglutarate oxid 97.8 0.00032 7E-09 84.5 15.1 65 776-844 149-213 (393)
400 PRK07608 ubiquinone biosynthes 97.7 8.6E-05 1.9E-09 89.7 10.0 106 595-703 5-167 (388)
401 COG1233 Phytoene dehydrogenase 97.7 2.5E-05 5.5E-10 95.9 5.4 56 224-280 224-279 (487)
402 PLN00128 Succinate dehydrogena 97.7 0.00023 4.9E-09 89.8 13.9 293 36-352 43-463 (635)
403 TIGR00275 flavoprotein, HI0933 97.7 0.00023 5E-09 85.4 13.4 84 195-282 76-160 (400)
404 PRK00711 D-amino acid dehydrog 97.7 0.00011 2.3E-09 89.8 10.6 57 1247-1305 201-257 (416)
405 PRK08849 2-octaprenyl-3-methyl 97.7 0.00029 6.2E-09 84.7 14.0 57 226-284 112-169 (384)
406 PRK05714 2-octaprenyl-3-methyl 97.7 9.5E-05 2.1E-09 89.7 9.8 47 658-704 122-169 (405)
407 TIGR03228 anthran_1_2_A anthra 97.7 3.1E-05 6.8E-10 91.1 5.3 74 970-1045 66-151 (438)
408 PRK07045 putative monooxygenas 97.7 0.00012 2.6E-09 88.3 10.3 37 41-77 3-39 (388)
409 COG2509 Uncharacterized FAD-de 97.7 0.00058 1.2E-08 77.7 14.6 84 200-284 149-232 (486)
410 PRK07512 L-aspartate oxidase; 97.7 0.00034 7.4E-09 86.6 14.4 55 297-354 341-396 (513)
411 PRK07236 hypothetical protein; 97.7 0.00014 3.1E-09 87.4 10.8 104 1066-1172 6-152 (386)
412 PF01946 Thi4: Thi4 family; PD 97.7 0.0001 2.2E-09 76.0 7.6 106 594-701 16-163 (230)
413 PRK07512 L-aspartate oxidase; 97.7 0.00033 7.2E-09 86.8 14.0 55 849-906 341-396 (513)
414 PRK12409 D-amino acid dehydrog 97.7 0.00081 1.7E-08 81.8 17.2 56 777-834 198-258 (410)
415 PLN00093 geranylgeranyl diphos 97.7 0.00016 3.5E-09 87.5 10.9 36 592-629 36-71 (450)
416 COG1635 THI4 Ribulose 1,5-bisp 97.7 0.00034 7.5E-09 71.3 11.2 168 1205-1376 30-257 (262)
417 PRK06134 putative FAD-binding 97.7 0.00016 3.5E-09 91.0 11.1 100 183-283 162-279 (581)
418 PRK07588 hypothetical protein; 97.7 0.00014 3E-09 87.7 10.2 106 596-703 1-158 (391)
419 PRK08244 hypothetical protein; 97.7 0.00014 3E-09 90.5 10.2 107 595-703 2-159 (493)
420 PRK07608 ubiquinone biosynthes 97.7 7.9E-05 1.7E-09 90.0 7.8 35 43-77 5-39 (388)
421 TIGR02023 BchP-ChlP geranylger 97.7 0.0001 2.2E-09 88.7 8.5 32 44-75 1-32 (388)
422 TIGR01984 UbiH 2-polyprenyl-6- 97.6 0.00011 2.5E-09 88.4 8.9 42 661-702 119-161 (382)
423 PF01494 FAD_binding_3: FAD bi 97.6 8.3E-05 1.8E-09 88.8 7.6 33 596-630 2-34 (356)
424 TIGR03329 Phn_aa_oxid putative 97.6 0.00044 9.4E-09 85.0 14.0 54 776-833 183-236 (460)
425 PRK08020 ubiF 2-octaprenyl-3-m 97.6 0.00016 3.4E-09 87.4 10.1 109 594-704 4-170 (391)
426 PRK07364 2-octaprenyl-6-methox 97.6 0.00019 4.1E-09 87.6 10.6 38 1064-1103 16-53 (415)
427 TIGR02028 ChlP geranylgeranyl 97.6 0.00019 4.2E-09 86.1 10.5 33 596-630 1-33 (398)
428 TIGR02023 BchP-ChlP geranylger 97.6 0.00018 3.9E-09 86.4 10.2 32 596-629 1-32 (388)
429 PF12831 FAD_oxidored: FAD dep 97.6 4.1E-05 8.9E-10 92.7 4.6 101 597-700 1-147 (428)
430 PF01134 GIDA: Glucose inhibit 97.6 0.00032 7E-09 80.9 11.5 95 1207-1303 1-150 (392)
431 COG1232 HemY Protoporphyrinoge 97.6 0.00012 2.6E-09 86.2 8.2 39 596-634 1-39 (444)
432 PRK07494 2-octaprenyl-6-methox 97.6 0.00013 2.8E-09 88.0 8.8 38 39-76 3-40 (388)
433 PLN00093 geranylgeranyl diphos 97.6 0.00021 4.6E-09 86.6 10.5 38 39-76 35-72 (450)
434 PF05834 Lycopene_cycl: Lycope 97.6 0.00018 3.9E-09 85.6 9.8 107 597-704 1-143 (374)
435 PRK05868 hypothetical protein; 97.6 0.0003 6.5E-09 83.7 11.6 106 595-702 1-159 (372)
436 PRK05868 hypothetical protein; 97.6 0.00029 6.2E-09 83.9 11.4 104 1066-1172 1-158 (372)
437 PRK00711 D-amino acid dehydrog 97.6 0.00081 1.8E-08 82.0 15.7 57 776-834 201-257 (416)
438 TIGR01377 soxA_mon sarcosine o 97.6 0.00084 1.8E-08 80.8 15.6 63 1246-1312 144-206 (380)
439 TIGR00275 flavoprotein, HI0933 97.6 0.00013 2.9E-09 87.3 8.5 102 599-703 1-160 (400)
440 COG1232 HemY Protoporphyrinoge 97.6 0.00013 2.9E-09 85.7 8.1 37 1068-1104 2-38 (444)
441 PLN02612 phytoene desaturase 97.6 0.00077 1.7E-08 84.4 15.4 57 776-832 308-364 (567)
442 PRK08020 ubiF 2-octaprenyl-3-m 97.6 0.00013 2.8E-09 88.1 8.3 36 41-76 3-38 (391)
443 TIGR01789 lycopene_cycl lycope 97.6 0.00023 4.9E-09 84.3 10.1 103 1068-1175 1-139 (370)
444 KOG2415|consensus 97.6 0.00053 1.1E-08 76.0 11.8 46 591-636 72-121 (621)
445 PRK06753 hypothetical protein; 97.6 0.00022 4.7E-09 85.6 10.0 105 596-702 1-151 (373)
446 TIGR01789 lycopene_cycl lycope 97.6 0.0003 6.5E-09 83.2 10.8 103 597-704 1-139 (370)
447 PRK09126 hypothetical protein; 97.6 0.00022 4.8E-09 86.2 9.9 46 660-705 123-169 (392)
448 PRK07494 2-octaprenyl-6-methox 97.6 0.00023 5E-09 85.9 9.9 35 594-630 6-40 (388)
449 PRK06185 hypothetical protein; 97.6 0.00029 6.2E-09 85.7 10.8 35 594-630 5-39 (407)
450 TIGR03171 soxL2 Rieske iron-su 97.6 7.8E-05 1.7E-09 80.8 5.0 62 976-1037 176-269 (321)
451 PRK09126 hypothetical protein; 97.6 0.00029 6.4E-09 85.1 10.7 35 43-77 3-37 (392)
452 TIGR01988 Ubi-OHases Ubiquinon 97.5 0.00021 4.6E-09 86.3 9.3 104 597-702 1-162 (385)
453 PRK08274 tricarballylate dehyd 97.5 0.00046 9.9E-09 85.3 12.3 64 224-288 131-199 (466)
454 PRK06481 fumarate reductase fl 97.5 0.00052 1.1E-08 85.1 12.5 64 1246-1310 189-257 (506)
455 TIGR02734 crtI_fam phytoene de 97.5 0.00041 8.9E-09 86.7 11.7 57 776-833 219-275 (502)
456 KOG2820|consensus 97.5 0.00028 6E-09 76.6 8.4 47 655-701 160-210 (399)
457 TIGR01377 soxA_mon sarcosine o 97.5 0.00076 1.6E-08 81.2 13.4 64 776-843 145-208 (380)
458 PF13454 NAD_binding_9: FAD-NA 97.5 0.00065 1.4E-08 69.4 10.9 33 599-631 1-36 (156)
459 PRK08013 oxidoreductase; Provi 97.5 0.00029 6.2E-09 85.2 9.7 42 662-703 126-168 (400)
460 PRK08849 2-octaprenyl-3-methyl 97.5 0.00048 1.1E-08 82.7 11.6 106 1067-1175 4-168 (384)
461 PLN02661 Putative thiazole syn 97.5 0.00032 6.8E-09 79.6 9.2 117 35-151 84-244 (357)
462 PRK11445 putative oxidoreducta 97.5 0.00031 6.8E-09 83.0 9.7 33 595-630 1-33 (351)
463 KOG1671|consensus 97.5 9.4E-05 2E-09 73.1 4.2 51 502-553 141-191 (210)
464 PRK06185 hypothetical protein; 97.5 0.00032 7E-09 85.2 9.9 37 40-76 3-39 (407)
465 PF13450 NAD_binding_8: NAD(P) 97.5 0.00014 3E-09 61.9 4.5 32 1071-1104 1-32 (68)
466 PRK01747 mnmC bifunctional tRN 97.5 0.00035 7.5E-09 89.9 10.5 58 1246-1306 407-464 (662)
467 PRK06183 mhpA 3-(3-hydroxyphen 97.5 0.00042 9.1E-09 87.1 10.8 36 593-630 8-43 (538)
468 PF05834 Lycopene_cycl: Lycope 97.5 0.00046 1E-08 82.1 10.5 107 45-152 1-143 (374)
469 COG3380 Predicted NAD/FAD-depe 97.5 0.00027 5.8E-09 74.3 7.2 32 596-629 2-33 (331)
470 PLN02612 phytoene desaturase 97.5 0.0016 3.4E-08 81.7 15.5 56 1247-1302 308-363 (567)
471 PRK08132 FAD-dependent oxidore 97.4 0.00048 1E-08 86.8 11.0 36 593-630 21-56 (547)
472 PRK06617 2-octaprenyl-6-methox 97.4 0.0004 8.6E-09 83.0 9.7 33 595-629 1-33 (374)
473 PRK11259 solA N-methyltryptoph 97.4 0.0012 2.7E-08 79.3 14.0 55 224-281 149-203 (376)
474 TIGR02028 ChlP geranylgeranyl 97.4 0.00038 8.1E-09 83.6 9.4 33 44-76 1-33 (398)
475 PRK06475 salicylate hydroxylas 97.4 0.00045 9.8E-09 83.5 10.0 33 595-629 2-34 (400)
476 TIGR01320 mal_quin_oxido malat 97.4 0.0015 3.3E-08 79.8 14.5 69 1246-1316 177-250 (483)
477 PRK05732 2-octaprenyl-6-methox 97.4 0.0004 8.7E-09 84.1 9.5 43 661-703 126-169 (395)
478 TIGR02731 phytoene_desat phyto 97.4 0.00087 1.9E-08 82.6 12.4 57 1247-1303 213-274 (453)
479 PRK11259 solA N-methyltryptoph 97.4 0.00096 2.1E-08 80.2 12.5 57 1246-1305 148-204 (376)
480 TIGR02731 phytoene_desat phyto 97.4 0.0012 2.5E-08 81.5 13.4 57 776-832 213-274 (453)
481 PRK08243 4-hydroxybenzoate 3-m 97.4 0.00061 1.3E-08 82.1 10.7 34 595-630 2-35 (392)
482 PRK08274 tricarballylate dehyd 97.4 0.0013 2.9E-08 81.2 13.9 57 1246-1303 130-190 (466)
483 PRK05732 2-octaprenyl-6-methox 97.4 0.00033 7.2E-09 84.8 8.4 34 42-75 2-38 (395)
484 PF00890 FAD_binding_2: FAD bi 97.4 0.00086 1.9E-08 81.8 12.1 60 1246-1306 140-204 (417)
485 PRK06183 mhpA 3-(3-hydroxyphen 97.4 0.0006 1.3E-08 85.6 10.9 37 41-77 8-44 (538)
486 TIGR03364 HpnW_proposed FAD de 97.4 0.0025 5.4E-08 76.2 15.7 53 776-835 145-198 (365)
487 PRK13339 malate:quinone oxidor 97.4 0.0012 2.5E-08 80.2 12.7 68 1247-1316 184-257 (497)
488 PRK06481 fumarate reductase fl 97.4 0.00077 1.7E-08 83.6 11.5 36 594-631 60-95 (506)
489 TIGR03364 HpnW_proposed FAD de 97.4 0.0029 6.2E-08 75.7 16.0 54 1246-1306 144-198 (365)
490 PRK07236 hypothetical protein; 97.4 0.00073 1.6E-08 81.3 10.9 101 1205-1307 6-156 (386)
491 PTZ00383 malate:quinone oxidor 97.4 0.0012 2.5E-08 80.5 12.5 67 776-845 211-283 (497)
492 PRK06126 hypothetical protein; 97.4 0.00069 1.5E-08 85.5 11.0 35 593-629 5-39 (545)
493 PRK05257 malate:quinone oxidor 97.4 0.002 4.4E-08 78.8 14.5 68 1247-1316 183-256 (494)
494 PRK01747 mnmC bifunctional tRN 97.4 0.00078 1.7E-08 86.7 11.5 57 776-835 408-464 (662)
495 PRK08850 2-octaprenyl-6-methox 97.4 0.00057 1.2E-08 82.8 9.7 110 1063-1175 1-169 (405)
496 PRK05257 malate:quinone oxidor 97.3 0.0029 6.2E-08 77.5 15.6 68 776-845 183-256 (494)
497 COG0445 GidA Flavin-dependent 97.3 0.00019 4.2E-09 83.1 4.8 107 43-149 4-156 (621)
498 COG2907 Predicted NAD/FAD-bind 97.3 0.0024 5.3E-08 69.6 12.5 62 1239-1302 209-270 (447)
499 PRK11445 putative oxidoreducta 97.3 0.00065 1.4E-08 80.3 9.0 33 43-76 1-33 (351)
500 PRK06996 hypothetical protein; 97.3 0.00073 1.6E-08 81.6 9.6 111 591-701 7-172 (398)
No 1
>KOG1336|consensus
Probab=100.00 E-value=1.9e-64 Score=557.49 Aligned_cols=466 Identities=41% Similarity=0.705 Sum_probs=419.2
Q ss_pred CCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcchhhhhccccCCCccccCCCCC
Q psy2951 987 HYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNK 1066 (1466)
Q Consensus 987 h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1066 (1466)
|+|+||.+|.+..+++.|||||+|||+.+|++++.|++++| +.+.+++++++.................+. ...
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~sl--~~v~~~~~~~~m~~~~~~~~~~~~~~~~~g----~~a 74 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDSL--SRVVVDNDGQVMQEEKRFKLVIVGGGVAAG----YAA 74 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccce--eeEEecCccceeeeccceeeeeeccccccc----ccc
Confidence 89999999999999999999999999999999999999998 777777788777643332222221111111 345
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCcccccccChhhhccCCcEEEcCCeEEEee
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDS 1146 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 1146 (1466)
++++|||+|++|..|+.+||+.++..+++|+.++.++||+|+.|++......+.+..+..+||++.+|++++++.|+.+
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~- 153 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA- 153 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe-
Confidence 7899999999999999999999999999999999999999999999998788888899999999999999999999999
Q ss_pred cCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHH
Q psy2951 1147 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 1224 (1466)
Q Consensus 1147 d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l 1224 (1466)
|...++|.+.+|+.+.|++|+||||+.++.+++| |.+ +++++|..+|+.++...+..+++|+++|+|++|+|+|++|
T Consensus 154 D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~p-G~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 154 DLASKTLVLGNGETLKYSKLIIATGSSAKTLDIP-GVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eccccEEEeCCCceeecceEEEeecCccccCCCC-CccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 9999999999999999999999999999999999 988 9999999999999998888899999999999999999999
Q ss_pred hcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1225 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1225 ~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
+..+.+||++++.+.++.+.+++.+.+.+...++++||+|++++.+.+++...+|++..|.+.||++++||+||+++|..
T Consensus 233 ~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 233 VSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred HhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 99999999999999999999999999999999999999999999999998556689999999999999999999999999
Q ss_pred cCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHH--hcCCCCCCC
Q psy2951 1305 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN--MVEKKTSLS 1382 (1466)
Q Consensus 1305 p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~--i~g~~~~~~ 1382 (1466)
|++.+++. |..++..|+|.||+++||++|+|||+||++++|...+ +...+++||+.|+.+|+.|... +..... +.
T Consensus 313 p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~-~~~~~v~H~~~A~~~g~~av~ai~~~~~~~-~~ 389 (478)
T KOG1336|consen 313 PNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGY-GEDRRVEHVDHARASGRQAVKAIKMAPQDA-YD 389 (478)
T ss_pred cccccccc-cceecccCCEeehhceeeccCCcccccceeecccccc-cccccchHHHHHHHHHHhhhhhhhccCccc-cc
Confidence 99999997 8888999999999999999999999999999998774 4444599999999999955444 444333 78
Q ss_pred CCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcc---
Q psy2951 1383 TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQI--- 1459 (1466)
Q Consensus 1383 ~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 1459 (1466)
.+|||||..|+..+|+.|++ +.++++.|+.+...|+.||++.+++..++..|.+....++.+++++++.+..-++
T Consensus 390 ~lPyf~t~~f~~~~~~~G~g--~~~~v~~G~~e~~~f~ay~~k~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~ 467 (478)
T KOG1336|consen 390 YLPYFYTRFFSLSWRFAGDG--VGDVVLFGDLEPGSFGAYWIKGDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSK 467 (478)
T ss_pred ccchHHHHHhhhhccccCcC--ccceeeecccccccceeeEeeccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccc
Confidence 99999999999999999998 6888999999988999999997788888889999999999999999999988444
Q ss_pred -cccCcC
Q psy2951 1460 -ENNAWA 1465 (1466)
Q Consensus 1460 -~~~~~~ 1465 (1466)
.++.|+
T Consensus 468 ~~~~~~~ 474 (478)
T KOG1336|consen 468 SGDSFWL 474 (478)
T ss_pred cchhhHH
Confidence 666664
No 2
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=5.2e-56 Score=530.55 Aligned_cols=388 Identities=25% Similarity=0.415 Sum_probs=351.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
.++|||||||+||++||..||+.+++++|+||+++++.||.++++++.+. ...+...+...+++.+.+|+++.+++|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 45899999999999999999999999999999999999999999998653 2223334556678888999999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.+ |+..+.|.+++|.++.||+||||||++|+.++++ +.. +++++++.+|+.++++.+..+++++|||+|++|+|+|
T Consensus 83 ~i-d~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~-~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A 160 (396)
T PRK09754 83 TL-GRDTRELVLTNGESWHWDQLFIATGAAARPLPLL-DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELA 160 (396)
T ss_pred EE-ECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCC-CcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99 9999999999999999999999999999888776 543 7999999999999998888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..|++.|.+||++++.+.++.+.+++.+.+.+.+.++++||++++++++++++ . + ....+.+.+|+++++|+||+++
T Consensus 161 ~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~-~-~-~~~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVV-D-G-EKVELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEE-c-C-CEEEEEECCCCEEECCEEEECC
Confidence 99999999999999999988877889999999999999999999999999998 3 2 3345788999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
|..|+++|++.+|+..+ ++|.||++++|++|+|||+|||+.++.. .|...+.++|++|..||++||+||+|...+|
T Consensus 238 G~~pn~~l~~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~--~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~ 313 (396)
T PRK09754 238 GISANDQLAREANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLD--NGALHRCESWENANNQAQIAAAAMLGLPLPL 313 (396)
T ss_pred CCChhhHHHHhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCC--CCCEEEECcHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999888888764 4599999999999999999999988765 4777899999999999999999999998899
Q ss_pred CCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcccc
Q psy2951 1382 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1382 ~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
..+|||||+|||.++|++|.... ++++++|+++...|+.||+++|+|+|++++|+++++..++++|+++.+++++.|+|
T Consensus 314 ~~~p~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (396)
T PRK09754 314 LPPPWFWSDQYSDNLQFIGDMRG-DDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSGKTFDAKLLID 392 (396)
T ss_pred CCCCceEEEeCCccEEEeeCCCC-CEEEEecCCCCceEEEEEeeCCEEEEEEEECCHHHHHHHHHHHHCCCCCCHHHhcC
Confidence 99999999999999999998764 78888998888889999999999999999999999999999999999999999977
Q ss_pred cC
Q psy2951 1462 NA 1463 (1466)
Q Consensus 1462 ~~ 1463 (1466)
..
T Consensus 393 ~~ 394 (396)
T PRK09754 393 EN 394 (396)
T ss_pred cc
Confidence 64
No 3
>KOG1336|consensus
Probab=100.00 E-value=1.1e-51 Score=456.45 Aligned_cols=445 Identities=42% Similarity=0.720 Sum_probs=389.6
Q ss_pred CCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccccccCCCCC
Q psy2951 516 HYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNK 595 (1466)
Q Consensus 516 H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (1466)
|.|+||..|.+..++++|||||.+|+.++|.+.+-|+...| ..+..+++..+.............+.. ......
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~sl--~~v~~~~~~~~m~~~~~~~~~~~~~~~----~~g~~a 74 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDSL--SRVVVDNDGQVMQEEKRFKLVIVGGGV----AAGYAA 74 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccce--eeEEecCccceeeeccceeeeeecccc----cccccc
Confidence 89999999999999999999999999999999999999998 555555555544322211111111111 111446
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEec
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDS 675 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~ 675 (1466)
+.++|||||++|..|+.++++.|+...++++.++.++||.++.+++........+..+..+++++.+|+++++++|+.+
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~- 153 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA- 153 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe-
Confidence 8999999999999999999999999999999999999999999998888888888899999999999999999999999
Q ss_pred cccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHH
Q psy2951 676 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 753 (1466)
Q Consensus 676 ~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l 753 (1466)
|...+++.+.+|+.+.|++++||||+.++.|++| |.+ ++.++++++++..+...+..+++|+++|+|++|+|+|..|
T Consensus 154 D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~p-G~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 154 DLASKTLVLGNGETLKYSKLIIATGSSAKTLDIP-GVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eccccEEEeCCCceeecceEEEeecCccccCCCC-CccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 9999999999999999999999999999999999 887 9999999999998888888899999999999999999999
Q ss_pred hccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 754 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 754 ~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
...+++||++++.+.++.+.+.+.+.+.++++++++||+++.++.+.+++...++++..|.+.+++++++|+||+.+|.+
T Consensus 233 ~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 233 VSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred HhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 99999999999999999889999999999999999999999999999999888889999999999999999999999999
Q ss_pred cCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc--cCCCcCc
Q psy2951 834 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLS 911 (1466)
Q Consensus 834 p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~--~~~~~~~ 911 (1466)
|++.+++. +..+++.|+|.||+.+||++|+|||+||++++|...+..... ++|++.|+.+|+.+...|. .... +.
T Consensus 313 p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~-v~H~~~A~~~g~~av~ai~~~~~~~-~~ 389 (478)
T KOG1336|consen 313 PNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRR-VEHVDHARASGRQAVKAIKMAPQDA-YD 389 (478)
T ss_pred cccccccc-cceecccCCEeehhceeeccCCcccccceeeccccccccccc-chHHHHHHHHHHhhhhhhhccCccc-cc
Confidence 99999987 888999999999999999999999999999999987665555 8999999999997666554 3333 77
Q ss_pred ccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 912 TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 912 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
.+||||+..|+..+++.|.+ +.+....++.+...|..|+.+.+++......+.+.....+
T Consensus 390 ~lPyf~t~~f~~~~~~~G~g--~~~~v~~G~~e~~~f~ay~~k~~~v~a~~~~g~~~~~~~~ 449 (478)
T KOG1336|consen 390 YLPYFYTRFFSLSWRFAGDG--VGDVVLFGDLEPGSFGAYWIKGDKVGAVAEGGRDEEVSQF 449 (478)
T ss_pred ccchHHHHHhhhhccccCcC--ccceeeecccccccceeeEeeccEEEEEeccCCChHHHHH
Confidence 99999999999998998887 6778888888888899999996666666666666555444
No 4
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=424.41 Aligned_cols=368 Identities=26% Similarity=0.427 Sum_probs=315.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhc-c-cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-D-IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
.++|||||||+||++||..|+++|++.+|++++++++.+|.++.+++.+ . ...+.......+++.+.+|+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999999999999999999999887776533 2 1222223334567788899999998899
Q ss_pred EeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHH
Q psy2951 673 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A 750 (1466)
.+ |...+.+.++++.++.||+||||||++|+.++++ +.. +++++++.+++..+.+.+..+++++|||+|++|+|+|
T Consensus 83 ~i-d~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~-~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A 160 (396)
T PRK09754 83 TL-GRDTRELVLTNGESWHWDQLFIATGAAARPLPLL-DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELA 160 (396)
T ss_pred EE-ECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCC-CcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99 8888999998899999999999999999888776 432 7888889999988887777789999999999999999
Q ss_pred HHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc
Q psy2951 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 751 ~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
..|++.|.+||++++.+.++...++++..+.+.+.++++||++++++++++++. ++ ...+.+.+|+++++|.||+++
T Consensus 161 ~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~-~~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GE-KVELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CC-EEEEEECCCCEEECCEEEECC
Confidence 999999999999999998876667888889999999999999999999999983 22 235678889999999999999
Q ss_pred ccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 831 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 831 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
|.+|++.+++..|+..+ +.|.||++++|+.|+|||+|||+..+.. .+...++++|+.|..||++||+||++...++
T Consensus 238 G~~pn~~l~~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~--~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~ 313 (396)
T PRK09754 238 GISANDQLAREANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLD--NGALHRCESWENANNQAQIAAAAMLGLPLPL 313 (396)
T ss_pred CCChhhHHHHhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCC--CCCEEEECcHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999988888888764 5699999999999999999999987654 4666778999999999999999999998889
Q ss_pred cccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhh
Q psy2951 911 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQ 972 (1466)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~ 972 (1466)
+.+||||+.+|+.++++.|.... ++....++.+...|..++.++|+++|+..+|.......
T Consensus 314 ~~~p~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 374 (396)
T PRK09754 314 LPPPWFWSDQYSDNLQFIGDMRG-DDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRP 374 (396)
T ss_pred CCCCceEEEeCCccEEEeeCCCC-CEEEEecCCCCceEEEEEeeCCEEEEEEEECCHHHHHH
Confidence 99999999999999999997654 55556666666778888888999999999998765443
No 5
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.3e-43 Score=452.86 Aligned_cols=374 Identities=22% Similarity=0.354 Sum_probs=327.2
Q ss_pred EEEECCchHHHHHHHHHHhcC-CCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1069 FIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1069 vvIVG~G~aGl~aA~~L~~~g-~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
|||||+|+||+++|.+|++.+ ...+||||+++++++|.|+.|+..+. .+.+++.+...+++++++|+++++++|+.|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 699999999999999999876 34599999999999999999998765 355667777888999999999999999999
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHH
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 1223 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~ 1223 (1466)
|+.+++|.+.+|.++.||+||||||+.|+.|++| |.+ +++++++++|+.++++.+..+++++|||+|++|+|+|..
T Consensus 81 -d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 81 -DTDQKQVITDAGRTLSYDKLILATGSYPFILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred -ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC-CCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 877 899999999999999888889999999999999999999
Q ss_pred HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1224 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1224 l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
|++.|.+|+++++.+.++.+.+++..++.+.+.++++||+++++..++++. .++....|.+.||+++++|+||+++|.
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~--~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIV--GATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEE--cCCceEEEEECCCCEEEcCEEEECCCC
Confidence 999999999999999999888999999999999999999999999999997 344677789999999999999999999
Q ss_pred ccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC-CCCC
Q psy2951 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSLS 1382 (1466)
Q Consensus 1304 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~-~~~~ 1382 (1466)
.|++++++.+|+.++ |+|+||++|+|++|+|||+|||+.++... ...|..|..||++||.||+|.. .+|.
T Consensus 237 ~Pn~~la~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~-------~gl~~~a~~qa~vaA~ni~g~~~~~~~ 307 (785)
T TIGR02374 237 RPNDELAVSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRV-------YGLVAPLYEQAKVLADHICGVECEEYE 307 (785)
T ss_pred CcCcHHHHhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcc-------cccHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 999999998999876 46999999999999999999999887643 2357889999999999999987 6777
Q ss_pred CCccce-eccccccEEEEeeCCCCc--eEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCC
Q psy2951 1383 TIPFFW-TMLFGVGFRFAGYAAGHT--QVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQ 1455 (1466)
Q Consensus 1383 ~~p~~w-~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1466)
..+... ...+|..+-..|.....+ +.+...+..+..|.++++++|+|+|++++|+..+...++.+++++..++
T Consensus 308 ~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavlvgd~~~~~~L~~li~~~~~l~ 383 (785)
T TIGR02374 308 GSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVLFGDTSDYGRLLDMVLKQADIS 383 (785)
T ss_pred CCccceEEEECCcceEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHcCCCCC
Confidence 666443 346777777777543222 2222235556779999999999999999999999999999999886554
No 6
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=6e-43 Score=443.57 Aligned_cols=379 Identities=21% Similarity=0.296 Sum_probs=321.0
Q ss_pred CcEEEECCchHHHHHHHHHHhcCC--CCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGF--TGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~--~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||+|+||+.+|..|++.+. ..+||||+++++++|+|..|+..+. ...+++.....+++++++|+++.+++|+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 489999999999999999987642 3599999999999999999999876 4556666777789999999999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.| |+..+.|.+.+|.++.||+||||||+.|+.|++| |.+ +++++++++++.++++....+++++|||+|++|+|+|
T Consensus 84 ~I-d~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A 161 (847)
T PRK14989 84 TI-NRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAA 161 (847)
T ss_pred EE-eCCCcEEEECCCcEEECCEEEECCCCCcCCCCCC-CCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHH
Confidence 99 9999999999999999999999999999999999 877 7999999999999988888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..|++.|.+|+++++.++++++.++++.++.+.+.++++||+++++..++++...+.+....+.+.||+++++|+||+++
T Consensus 162 ~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 162 GALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence 99999999999999999988888999999999999999999999999999997222234667889999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
|.+|++++++.+|+.++.+|+|.||++|+|++|+|||+|||+.++... ...|..|..||++||.||+|...+|
T Consensus 242 G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~-------~gl~~~a~~~a~vaa~~i~g~~~~~ 314 (847)
T PRK14989 242 GIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRV-------FGLVAPGYKMAQVAVDHLLGSENAF 314 (847)
T ss_pred CcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcc-------cccHHHHHHHHHHHHHHhcCCCcCC
Confidence 999999999999999998899999999999999999999999886543 2357899999999999999987666
Q ss_pred CCCccc-eeccccccEEEEeeCCCCc----eEEEcCCcCCceEEEEEEe--CCEEEEEEEecCcHHHHHHHHHHHcCCCC
Q psy2951 1382 STIPFF-WTMLFGVGFRFAGYAAGHT----QVDIVGDLEALKFTAYYSN--ADKVLAILTVGMDPLAAQFAERIKMQKYI 1454 (1466)
Q Consensus 1382 ~~~p~~-w~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1454 (1466)
...... -...+|..+-..|...+.+ ..... +.....|.+++++ +++|+|+.++|+..+...+..++..+..+
T Consensus 315 ~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~-~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l 393 (847)
T PRK14989 315 EGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYL-DESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIEL 393 (847)
T ss_pred CCcccceEEEECCcceEecccccCCCCCceeEEEE-cCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCC
Confidence 543222 2235566555555322221 22222 2235667777775 46999999999999889989988777555
Q ss_pred C
Q psy2951 1455 Q 1455 (1466)
Q Consensus 1455 ~ 1455 (1466)
+
T Consensus 394 ~ 394 (847)
T PRK14989 394 P 394 (847)
T ss_pred c
Confidence 3
No 7
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=9.6e-43 Score=414.38 Aligned_cols=358 Identities=22% Similarity=0.296 Sum_probs=306.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCccccccc-ChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLR-TEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~-~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||||+||+++|..||+.+.+.+||||+++++.+|.+|.++..+. ...+++... ..+++++++++++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999999888999999999999999998887765 233444333 3467788899999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 1223 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~ 1223 (1466)
.+ |++.+.|.+ ++..+.||+||||||++|+.|+++ |.+.++.+++++++.++++.+..+++++|||+|++|+|+|..
T Consensus 83 ~i-d~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~-G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~ 159 (377)
T PRK04965 83 DI-DAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIP-GRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMD 159 (377)
T ss_pred EE-ECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCC-CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 99 999888887 566899999999999999999999 877788889999998888888788999999999999999999
Q ss_pred HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1224 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1224 l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
|++.|.+|+++++.+.++.+.+++.+...+.+.+++.||++++++++++++ .++ ....+.+.+|+++++|+||+|+|.
T Consensus 160 L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~-~~~-~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 160 LCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLE-KTD-SGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEE-ccC-CEEEEEEcCCcEEECCEEEECcCC
Confidence 999999999999999888877888999999999999999999999999998 333 344578899999999999999999
Q ss_pred ccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCC
Q psy2951 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLST 1383 (1466)
Q Consensus 1304 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~ 1383 (1466)
.|++++++.+|+..+ +| +.||++++|+.|+|||+|||+..+.. ....|..|..||++||+||+|...+|..
T Consensus 238 ~p~~~l~~~~gl~~~-~g-i~vd~~l~ts~~~VyA~GD~a~~~~~-------~~~~~~~a~~~g~~~a~n~~g~~~~~~~ 308 (377)
T PRK04965 238 RPNTALARRAGLAVN-RG-IVVDSYLQTSAPDIYALGDCAEINGQ-------VLPFLQPIQLSAMALAKNLLGQNTPLKL 308 (377)
T ss_pred CcchHHHHHCCCCcC-CC-EEECCCcccCCCCEEEeeecEeECCc-------eeehHHHHHHHHHHHHHHhcCCCccccc
Confidence 999999998999876 44 99999999999999999999987542 2456888999999999999998888887
Q ss_pred Ccccee-ccccccEEEEeeCCCCc-eEEEcCCcCCceEEEEEEeCCEEEEEEEecCcH
Q psy2951 1384 IPFFWT-MLFGVGFRFAGYAAGHT-QVDIVGDLEALKFTAYYSNADKVLAILTVGMDP 1439 (1466)
Q Consensus 1384 ~p~~w~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1466)
.+..++ ..++..+..+|.....+ .+.+. +.+++.|.+++++||+|+|++++|+..
T Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 309 PAMLVKVKTPELPLQLAGETQRQDLRWQIN-AESQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred CCccEEEecCceeeEECCCCCCCCceEEEE-eCCCCeEEEEEccCCcEEEEEEEChhH
Confidence 665544 47899999999865333 23332 234567888888999999999999854
No 8
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.5e-42 Score=400.55 Aligned_cols=379 Identities=23% Similarity=0.357 Sum_probs=335.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCC-CCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGF-TGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~-~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
..++||||.|+||..+...|.+... .-+||++..|+++.|+|..|+..+. .+.+++.+...+||++++|+++.+.+|
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 4689999999999999999988432 2499999999999999999999986 678888899999999999999999999
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
+.| |+.+|.|.++.|..+.||+||+||||.|+.+|+| |.+ +++.+|+.+|..++.+..+..++.+|||+|..|+|+
T Consensus 83 ~~i-dr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiP-G~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEa 160 (793)
T COG1251 83 IQI-DRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEA 160 (793)
T ss_pred EEe-ccCcceEEccCCcEeecceeEEecCccccccCCC-CCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHH
Confidence 999 9999999999999999999999999999999999 988 999999999999998886667888999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEe
Q psy2951 1221 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300 (1466)
Q Consensus 1221 a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a 1300 (1466)
|..|...|.+++++.-.+.+|++++++..++.|++.+++.|++++++...+++. + .+++..++++||+.+++|+||+|
T Consensus 161 A~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~-g-~~~~~~vr~~DG~~i~ad~VV~a 238 (793)
T COG1251 161 ARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIV-G-EDKVEGVRFADGTEIPADLVVMA 238 (793)
T ss_pred HHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhh-c-CcceeeEeecCCCcccceeEEEe
Confidence 999999999999999999999999999999999999999999999999999987 3 66889999999999999999999
Q ss_pred eccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC-
Q psy2951 1301 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT- 1379 (1466)
Q Consensus 1301 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~- 1379 (1466)
+|++||.+++..+|++++. +|+||++|+||+|+|||+|+|+.+.... +.....+.+||+++|.++++...
T Consensus 239 ~GIrPn~ela~~aGlavnr--GIvvnd~mqTsdpdIYAvGEcae~~g~~-------yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 239 VGIRPNDELAKEAGLAVNR--GIVVNDYMQTSDPDIYAVGECAEHRGKV-------YGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred cccccccHhHHhcCcCcCC--CeeecccccccCCCeeehhhHHHhcCcc-------ceehhHHHHHHHHHHHHhccCccc
Confidence 9999999999999999996 4999999999999999999999986543 33447899999999999999755
Q ss_pred CCC-CCccceeccccccEEEEeeCC--CCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCCh
Q psy2951 1380 SLS-TIPFFWTMLFGVGFRFAGYAA--GHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQK 1456 (1466)
Q Consensus 1380 ~~~-~~p~~w~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1466)
.|. .++..--+..|.++--+|.-+ ...+.++--|+....|.+..++||+++|++++|+..+-..+.++|.++..++.
T Consensus 310 ~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt~d~~~l~~li~~~~~~se 389 (793)
T COG1251 310 AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISE 389 (793)
T ss_pred ccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEeecccchHHHHHHhcCCCccc
Confidence 454 344333346677777777643 22333444566778899999999999999999999999999999999987754
Q ss_pred h
Q psy2951 1457 D 1457 (1466)
Q Consensus 1457 ~ 1457 (1466)
.
T Consensus 390 ~ 390 (793)
T COG1251 390 I 390 (793)
T ss_pred c
Confidence 3
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.6e-40 Score=385.97 Aligned_cols=379 Identities=28% Similarity=0.390 Sum_probs=281.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC-C--CCCCCCCccchhc-----------------c-------c
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-N--FLPYDRVKLSKQL-----------------D-------I 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~-~--~~~~~~~~~~~~~-----------------~-------~ 93 (1466)
+.+||++|||+||||..||.++++.|.++.++|.... . ++.+ -+-.++.+ + .
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~-GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV-GCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee-CccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 3479999999999999999999999999555554421 0 0000 00001110 0 0
Q ss_pred Cc-----------ccccccChhhhhcCCeEEEeCceEEEeccccccEEEecC--CcEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 94 KA-----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD--GTSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 94 ~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~--~~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
+. +........++++.+|+++.|+..+.+ .+++.+.. .++++++++|||||++|+.+|.++ .
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~----~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~-~ 155 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD----PHTVEVTGEDKETITADNIIIATGSRPRIPPGPG-I 155 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC----CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCC-C
Confidence 11 111223345566779999999988764 36777766 478999999999999999877443 3
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+....+ +..+...+. .-+++++|||||++|+|+|..++++|.+||++++.+.++ +.+++++.+.+.+.|++.|++
T Consensus 156 ~~~~~~-~s~~~l~~~---~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-p~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 156 DGARIL-DSSDALFLL---ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCeEE-echhhcccc---cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-CcCCHHHHHHHHHHHHhCCeE
Confidence 332222 223333333 235799999999999999999999999999999999887 589999999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCc--EEeccEEEEeeccccCcc--ccccCCceecCCccEEECCCCCcCCCCEEEe
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAG 316 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~Vi~a~G~~p~~~--~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~ 316 (1466)
+++++.+++++.++++ ..+.++++. ++.+|.|++|+|++||++ .|++.|++++++|+|.||+.++|++|||||+
T Consensus 231 i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~ 308 (454)
T COG1249 231 ILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAI 308 (454)
T ss_pred EEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEe
Confidence 9999999999876533 446666665 789999999999999999 3789999999999999998888999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC-CC--CCCCCCC---cccccccceeeEEEEeecCC-----ceE
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE-KK--TSLSTIP---FFWTMLFGVGFRFAGYAAGH-----TQV 385 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~--~~~~~~p---~~~s~~~~~~~~~~G~~~~~-----~~~ 385 (1466)
|||++.+++ ...|..||++|++|+++ .. .++..+| |..|+...+|+......... ...
T Consensus 309 GDV~~~~~L-----------ah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~ 377 (454)
T COG1249 309 GDVIGGPML-----------AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKF 377 (454)
T ss_pred eccCCCccc-----------HhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEe
Confidence 999887754 44799999999999997 32 2567788 46666666664100000000 011
Q ss_pred EEe------cccCCCeEEEEEEcC--CEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 DIV------GDLEALKFTAYYSNA--DKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ~~~------g~~~~~~~~~~~~~~--~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+. -.-+..+|.+.+.+. ++|+|++++|. +++++.++ .+|+++.+. ++|.|||++|.+
T Consensus 378 ~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~-~a~~~g~t~~~~~~~i~~HPT~sE~~ 450 (454)
T COG1249 378 PFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIA-LAIEMGATAEDLALTIHAHPTLSEAL 450 (454)
T ss_pred ecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHCCCcHHHHhcCCCCCCChHHHH
Confidence 111 111467999999884 89999999999 56777777 999999865 899999999987
No 10
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.5e-39 Score=412.65 Aligned_cols=368 Identities=22% Similarity=0.311 Sum_probs=306.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC--CCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNG--FTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g--~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+++|||||||+||+++|..|++++ ...+|++++++++++|.++.++..+. ...+++......++++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 468999999999999999998864 34679999999999999988887765 445566677778889999999999989
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
..+ |.+.+.|.+.++.++.||+||||||+.|+.|++| |.+ +++.+++++++..+......+++++|||+|++|+|+
T Consensus 83 ~~I-d~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~ 160 (847)
T PRK14989 83 ITI-NRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA 160 (847)
T ss_pred EEE-eCCCcEEEECCCcEEECCEEEECCCCCcCCCCCC-CCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHH
Confidence 999 8888899888888999999999999999999999 876 688899999998887777778999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|+++|.+|+++++.+.++...++++..+.+.+.|+++||+++++..+++|....++....+.+++|+++++|+||+|
T Consensus 161 A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A 240 (847)
T PRK14989 161 AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240 (847)
T ss_pred HHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence 99999999999999999988877799999999999999999999999999999743334456788899999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
+|.+|++++++++|++++++|+|.||++++|++|+|||+|||+..+... .+.+..|..||++||.||+|....
T Consensus 241 ~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~-------~gl~~~a~~~a~vaa~~i~g~~~~ 313 (847)
T PRK14989 241 TGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRV-------FGLVAPGYKMAQVAVDHLLGSENA 313 (847)
T ss_pred CCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcc-------cccHHHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999999999999999999999875533 236678999999999999997765
Q ss_pred CcccCee-eeeecCceeEEeeccCCCC---ceeEecccccceEEEEEec--CCeEEEEEeecCchhhh
Q psy2951 910 LSTIPFF-WTMLFGVGFRFAGYAAGHT---QVDIVGDLEALKFTAYYSN--ADKVLAILTVGMDPLAA 971 (1466)
Q Consensus 910 ~~~~~~~-~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~i~g~~~~g~~~~~~ 971 (1466)
++..... ....++..+...|...+.. ......+.....|.|++++ +++++|++++|......
T Consensus 314 ~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~ 381 (847)
T PRK14989 314 FEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYG 381 (847)
T ss_pred CCCcccceEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHH
Confidence 5443222 2236676666666432221 1222122234568888883 56899999999765333
No 11
>KOG1346|consensus
Probab=100.00 E-value=5.2e-41 Score=356.31 Aligned_cols=382 Identities=24% Similarity=0.381 Sum_probs=316.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccC-----------------cccccccChhhh
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK-----------------ADSILLRTEEFY 1129 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~ 1129 (1466)
-..+|||+|.+..+++.+.+....+..+.+|+.++.+||.||||||.+... ...+++.+..||
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff 258 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF 258 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence 458999999999999999998888889999999999999999999987411 112222222232
Q ss_pred c---------cCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCC--CCC---cEEEecCHHHH
Q psy2951 1130 K---------DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GVN---KVFYLRTVEDA 1195 (1466)
Q Consensus 1130 ~---------~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~--g~~---~v~~~~~~~~~ 1195 (1466)
- .-||.+..+..|..| |...+.|++.||.+|.||+++||||.+|+.++.-. +.+ .+.++|...|+
T Consensus 259 vspeDLp~~~nGGvAvl~G~kvvki-d~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF 337 (659)
T KOG1346|consen 259 VSPEDLPKAVNGGVAVLRGRKVVKI-DEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADF 337 (659)
T ss_pred eChhHCcccccCceEEEeccceEEe-ecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHH
Confidence 2 238899999999999 99999999999999999999999999999876431 111 68899999999
Q ss_pred HhhhcccCCCCeEEEEcCCHHHHHHHHHHhcC----CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEE
Q psy2951 1196 NNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVS 1271 (1466)
Q Consensus 1196 ~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~----g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~ 1271 (1466)
.++...+..-++|.|||+|++|.|+|..|.+. |.+|+-+.....+|...|++-+++|-.+.+++.||.++.+..|.
T Consensus 338 ~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~ 417 (659)
T KOG1346|consen 338 KRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVE 417 (659)
T ss_pred HHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhh
Confidence 99999888889999999999999999988765 78999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCC-CeEEeCCCccccCCCEEEecccccCCCccC
Q psy2951 1272 SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350 (1466)
Q Consensus 1272 ~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~-G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~ 1350 (1466)
++. ...++ ..+.|+||.++..|+||+|+|..||+++++.+||++|.+ |++.||..++.. .|||++||++.|.+..
T Consensus 418 sv~-~~~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~- 493 (659)
T KOG1346|consen 418 SVR-KCCKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGV- 493 (659)
T ss_pred hhh-hhccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhccc-
Confidence 987 33333 448899999999999999999999999999999999976 789999998875 8999999999998876
Q ss_pred CCceeeeecHHHHHHHHHHHHHHhcCCCCCCCCCccceeccccccEEE--EeeCC-------------CCceE---EEc-
Q psy2951 1351 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRF--AGYAA-------------GHTQV---DIV- 1411 (1466)
Q Consensus 1351 ~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~~~~~~~~~--~g~~~-------------~~~~~---~~~- 1411 (1466)
-++.|++||.+|.-.||.|+.||.|...||...-+|||+ .+..+.| +|.-. +.+++ --.
T Consensus 494 -LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsd-lgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~s 571 (659)
T KOG1346|consen 494 -LGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSD-LGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESS 571 (659)
T ss_pred -ccceeccccccceeeceecccccccccCCccccceeeec-cCcccccceeeecccCCCcceeeeccccccchhhhhhcc
Confidence 356799999999999999999999999999988899997 4444433 33211 00000 000
Q ss_pred ---------------------------CCcCC----ceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCC
Q psy2951 1412 ---------------------------GDLEA----LKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQ 1455 (1466)
Q Consensus 1412 ---------------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1466)
-+|.+ ++-+.||++|+.+||++++|--..+..+|++|.++...+
T Consensus 572 dt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 572 DTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred CCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhhhccchhhHHHhccccchh
Confidence 01221 245789999999999999999999999999999886554
No 12
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=7.8e-39 Score=380.84 Aligned_cols=368 Identities=21% Similarity=0.274 Sum_probs=299.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCccccccc-CHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLR-TEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~gv~~~~~~~v 671 (1466)
+++|||||||+||+++|..|++++.+.+|+++++++..+|..+.++..+. ...+++... ..+++++.|++++.+++|
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 36899999999999999999999999999999999988888777655543 334444443 445677889999999889
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 751 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~ 751 (1466)
+.+ +.+++.+.+ ++..+.||+||||||++|+.|+++ |.+.++.++++.++..+...+..+++|+|||+|++|+|+|.
T Consensus 82 ~~i-d~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~-G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~ 158 (377)
T PRK04965 82 TDI-DAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIP-GRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAM 158 (377)
T ss_pred EEE-ECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCC-CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence 999 888888876 567899999999999999999999 87778888898888877777677899999999999999999
Q ss_pred HHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccc
Q psy2951 752 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 752 ~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 831 (1466)
.|++.+.+|+++++.+.++...++++....+.+.+++.||++++++++++++.. ++ ...+.+.+|+++++|.||+|+|
T Consensus 159 ~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 159 DLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DS-GIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CC-EEEEEEcCCcEEECCEEEECcC
Confidence 999999999999999887766678889999999999999999999999999843 22 3357788999999999999999
Q ss_pred cccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCc
Q psy2951 832 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLS 911 (1466)
Q Consensus 832 ~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~ 911 (1466)
.+|++.+++..|++.+. | +.||++++|+.|+|||+|||+..+... .+.+..|..||+.+|+||+|....|.
T Consensus 237 ~~p~~~l~~~~gl~~~~-g-i~vd~~l~ts~~~VyA~GD~a~~~~~~-------~~~~~~a~~~g~~~a~n~~g~~~~~~ 307 (377)
T PRK04965 237 LRPNTALARRAGLAVNR-G-IVVDSYLQTSAPDIYALGDCAEINGQV-------LPFLQPIQLSAMALAKNLLGQNTPLK 307 (377)
T ss_pred CCcchHHHHHCCCCcCC-C-EEECCCcccCCCCEEEeeecEeECCce-------eehHHHHHHHHHHHHHHhcCCCcccc
Confidence 99999998888988753 4 999999999999999999999865321 24567799999999999999887776
Q ss_pred ccCeeee-eecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhhhhh
Q psy2951 912 TIPFFWT-MLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAER 976 (1466)
Q Consensus 912 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~~~g 976 (1466)
..+...+ ..++.++.+.|...+....+...+.+...|.+++.++++++|+..+|..........+
T Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~~~~~~~ 373 (377)
T PRK04965 308 LPAMLVKVKTPELPLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKEAFPLLK 373 (377)
T ss_pred cCCccEEEecCceeeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHHHHHHHH
Confidence 5443333 2677788888875432212211122345577888899999999999887655444333
No 13
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=7.9e-39 Score=408.83 Aligned_cols=363 Identities=22% Similarity=0.362 Sum_probs=306.1
Q ss_pred EEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 598 FIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 598 vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
|||||||+||++||..|++++ ...+|++++++++++|.++.++..+. .+.+++.....+++++.+|+++++++|+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999999876 45679999999999999888876654 455667777888999999999999989999
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHH
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 752 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~ 752 (1466)
|...+.|.+.++.++.||+||||||+.|+.|++| |.+ +++.+++++++..+.+....+++++|||+|++|+|+|..
T Consensus 81 -d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 81 -DTDQKQVITDAGRTLSYDKLILATGSYPFILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred -ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC-CCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 8889999999999999999999999999999999 876 789999999998887777778999999999999999999
Q ss_pred HhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 753 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 753 l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
|+++|.+|+++++.+.++...+++.....+.+.++++||+++++..++++.. ++....+.+++|+++++|+||+++|.
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCC
Confidence 9999999999999998887778999999999999999999999999999973 34566788899999999999999999
Q ss_pred ccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC-CcCc
Q psy2951 833 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSLS 911 (1466)
Q Consensus 833 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-~~~~ 911 (1466)
+|++++++.+|++++ |.|.||+++||++|+|||+|||+..+... .+.+..|..||+++|.||+|.. .+++
T Consensus 237 ~Pn~~la~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~-------~gl~~~a~~qa~vaA~ni~g~~~~~~~ 307 (785)
T TIGR02374 237 RPNDELAVSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRV-------YGLVAPLYEQAKVLADHICGVECEEYE 307 (785)
T ss_pred CcCcHHHHhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcc-------cccHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 999999988888876 56999999999999999999999876543 1356789999999999999877 5666
Q ss_pred ccCeee-eeecCceeEEeeccCCCC--ceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 912 TIPFFW-TMLFGVGFRFAGYAAGHT--QVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 912 ~~~~~~-~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
..+... ..+|+..+...|...... +.....+.....|.++++++++++|++.++......++
T Consensus 308 ~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavlvgd~~~~~~L 372 (785)
T TIGR02374 308 GSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVLFGDTSDYGRL 372 (785)
T ss_pred CCccceEEEECCcceEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEEECCHHHHHHH
Confidence 555433 337888777777543222 12222233445688888889999999999987644433
No 14
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.7e-38 Score=383.49 Aligned_cols=383 Identities=19% Similarity=0.315 Sum_probs=295.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcc-cccccChhhhccCCcEEEcCCe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKAD-SILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~-~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
|.+|||||||+||++||.+|++.+.+.+|+|||++++++|.++.++.... ...+ .+.+....++++.+++++.+++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 35899999999999999999998777899999999999998765555442 1112 2233334566778999999999
Q ss_pred EEEeecCCCCeEEecCCc-----EEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccC--CCCeEEEEcCC
Q psy2951 1142 IISDSELNEKKIKLQDGT-----SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS 1214 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~-----~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g 1214 (1466)
|+.| |+++++|.+.++. ++.||+||||||++|+.|+++ + ++++.+++++++.++++.+. .+++++|||+|
T Consensus 81 V~~I-d~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG 157 (438)
T PRK13512 81 VIAI-NDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFE-S-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAG 157 (438)
T ss_pred EEEE-ECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCC-C-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 9999 9999999987542 478999999999999887654 2 37888888999988876653 36899999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeec
Q psy2951 1215 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294 (1466)
Q Consensus 1215 ~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~ 1294 (1466)
++|+|+|..|++.|.+|+++++.++++. .+++++.+.+.+.++++||+++++.++++++ . . .+.+.+|+++++
T Consensus 158 ~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~-~-~----~v~~~~g~~~~~ 230 (438)
T PRK13512 158 YISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAIN-G-N----EVTFKSGKVEHY 230 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEe-C-C----EEEECCCCEEEe
Confidence 9999999999999999999999887664 6788999999999999999999999999997 2 2 367788889999
Q ss_pred CEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHh
Q psy2951 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374 (1466)
Q Consensus 1295 D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i 1374 (1466)
|.|++++|..|++++++..|+.++++|+|.||+++||++|+|||+|||+..+... .+.+.....++.|..||+++|+||
T Consensus 231 D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 231 DMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRH-VDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred CEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeecc-CCCceecccchHHHHHHHHHHHHh
Confidence 9999999999999999999999988889999999999999999999999754332 233334455677999999999999
Q ss_pred cCCCC-CC-CCCccceeccccccEEEEeeCC----CC--ceEEEcC-------CcCCceEEEEEEe--CCEEEEEEEecC
Q psy2951 1375 VEKKT-SL-STIPFFWTMLFGVGFRFAGYAA----GH--TQVDIVG-------DLEALKFTAYYSN--ADKVLAILTVGM 1437 (1466)
Q Consensus 1375 ~g~~~-~~-~~~p~~w~~~~~~~~~~~g~~~----~~--~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~ 1437 (1466)
+|... ++ ...+..|...++..+-.+|..+ .. ....... .-++..|++++++ +++++|+..+|.
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~ 389 (438)
T PRK13512 310 AGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGK 389 (438)
T ss_pred cCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEcc
Confidence 98643 33 2223334555677777777743 11 1111111 0123457777763 689999999998
Q ss_pred c--H-HHHHHHHHHHcCCCCChhcccc
Q psy2951 1438 D--P-LAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1438 ~--~-~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
. . .+..+.-+|+.+ ++.++|.+
T Consensus 390 ~~a~e~i~~~~~ai~~~--~t~~~l~~ 414 (438)
T PRK13512 390 EGADKRIDVLSMAMMNQ--LTVDELTE 414 (438)
T ss_pred ccHHHHHHHHHHHHHcC--CcHHHHhh
Confidence 5 2 234555567666 44555543
No 15
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.8e-38 Score=387.93 Aligned_cols=384 Identities=21% Similarity=0.328 Sum_probs=303.0
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
+|||||||+||+++|..|++.+...+|+|||+++++.|.++.+..... .....+..+..+.+.+.+++++.+++|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 699999999999999999998776799999999988877654443222 12223344555667788999999999999
Q ss_pred eecCCCCeEEecC---CcEEe--cCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC--CCCeEEEEcCCH
Q psy2951 1145 DSELNEKKIKLQD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSF 1215 (1466)
Q Consensus 1145 i~d~~~~~v~~~~---g~~~~--yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g~ 1215 (1466)
| |++.+.|.+.+ +..+. ||+||||||++|+.|+++ |++ +++++++++++.++++.+. .+++|+|||+|+
T Consensus 82 i-d~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~-g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~ 159 (444)
T PRK09564 82 V-DAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK-NINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGF 159 (444)
T ss_pred E-ECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCH
Confidence 9 99999998864 56677 999999999999999998 876 7888889999988887664 368999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecC
Q psy2951 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD 1295 (1466)
Q Consensus 1216 ~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D 1295 (1466)
+|+|+|..+++.|.+|+++++.++++...+++++.+.+.+.++++||+++++++++++. . ++++..+.++ +.++++|
T Consensus 160 ~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~-~-~~~~~~v~~~-~~~i~~d 236 (444)
T PRK09564 160 IGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI-G-EDKVEGVVTD-KGEYEAD 236 (444)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEe-c-CCcEEEEEeC-CCEEEcC
Confidence 99999999999999999999998888767889999999999999999999999999997 3 4455555554 4579999
Q ss_pred EEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1296 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.|++|+|..|++++++.+|+.++.+|+|.||++++|+.|||||+|||+..+... .+.+.....|+.|..||+++|+||+
T Consensus 237 ~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 237 VVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIV-SNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred EEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEecc-CCCeeeccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999887889999999999999999999999887654 3555667789999999999999999
Q ss_pred CCCCCCC-CCccceeccccccEEEEeeCC------CCceEE--Ec-CC------cCCceEEEEEE--eCCEEEEEEEecC
Q psy2951 1376 EKKTSLS-TIPFFWTMLFGVGFRFAGYAA------GHTQVD--IV-GD------LEALKFTAYYS--NADKVLAILTVGM 1437 (1466)
Q Consensus 1376 g~~~~~~-~~p~~w~~~~~~~~~~~g~~~------~~~~~~--~~-~~------~~~~~~~~~~~--~~~~~~~~~~~~~ 1437 (1466)
|...++. ..+..+...++..+-.+|..+ +.+-.+ .. .+ -.+..|++..+ ++++++|+..+|.
T Consensus 316 g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~ 395 (444)
T PRK09564 316 GRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGK 395 (444)
T ss_pred CCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcC
Confidence 9765442 122123335677777778642 122111 11 00 01245776666 4789999999997
Q ss_pred c---HHHHHHHHHHHcCCCCChhcc
Q psy2951 1438 D---PLAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1438 ~---~~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
. ..+..+.-+|+.+ ++.++|
T Consensus 396 ~~~~~~i~~~~~~i~~~--~~~~~~ 418 (444)
T PRK09564 396 KGAVLRIDALAVAIYAK--LTTQEL 418 (444)
T ss_pred ccHHHHHHHHHHHHHCC--CCHHHH
Confidence 4 3344556677777 444544
No 16
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.4e-37 Score=375.63 Aligned_cols=362 Identities=19% Similarity=0.321 Sum_probs=284.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCH-hHhhhCCcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTE-EFYKDNDIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~gv~~~~~~~ 670 (1466)
+++|||||||+||++||..|++++.+.+|+++++++++.|..+.+..... ...++...... .+.++.|++++.+++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 46899999999999999999998877889999999988888766554432 11222333333 344667999999888
Q ss_pred EEEeccccccEEEccCC---C--EEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCC--CCCcEEEECCC
Q psy2951 671 IISDSELNEKKIKLQDG---T--SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS 743 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~---~--~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G 743 (1466)
|..+ |.+++.|.+.++ . +++||+||||||++|+.|+++ + ++++..+++.++..+.+.+. .+++++|||+|
T Consensus 81 V~~I-d~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG 157 (438)
T PRK13512 81 VIAI-NDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFE-S-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAG 157 (438)
T ss_pred EEEE-ECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCC-C-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 9999 998888887653 2 478999999999999888765 3 35777888888776654432 37899999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.|+++||++++++++++++. . .+.+++|+++++
T Consensus 158 ~ig~E~A~~l~~~g~~Vtli~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~ 230 (438)
T PRK13512 158 YISLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHY 230 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccccc-hhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEe
Confidence 999999999999999999999998765 578899999999999999999999999999972 1 456677889999
Q ss_pred CEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|.|++|+|++|+++++++.|++++++|+|.||+++||+.|+|||+|||+..+... .+.+..++.++.|.+||+++|+||
T Consensus 231 D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 231 DMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRH-VDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred CEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeecc-CCCceecccchHHHHHHHHHHHHh
Confidence 9999999999999999999999988899999999999999999999999754322 233445567788999999999999
Q ss_pred ccCCC-cC-cccCeeeeeecCceeEEeeccCCCCc------eeEec-------ccccceEEEEEe--cCCeEEEEEeecC
Q psy2951 904 VEKKT-SL-STIPFFWTMLFGVGFRFAGYAAGHTQ------VDIVG-------DLEALKFTAYYS--NADKVLAILTVGM 966 (1466)
Q Consensus 904 ~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~-------~~~~~~~~~~~~--~~~~i~g~~~~g~ 966 (1466)
+|... .+ ...+..+..+++..+..+|+++...+ ..... .-++.+|.|+++ ++++++|++++|.
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~ 389 (438)
T PRK13512 310 AGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGK 389 (438)
T ss_pred cCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEcc
Confidence 98542 22 22222334467777888887653111 11100 113456889888 4689999999998
Q ss_pred c
Q psy2951 967 D 967 (1466)
Q Consensus 967 ~ 967 (1466)
+
T Consensus 390 ~ 390 (438)
T PRK13512 390 E 390 (438)
T ss_pred c
Confidence 6
No 17
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=4.1e-37 Score=375.95 Aligned_cols=366 Identities=21% Similarity=0.322 Sum_probs=290.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
++|||||||+||+++|..|++++.+.+|+++++++++.|..+.+..... ....++..+..+.+++.|++++.+++|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 4799999999999999999999887889999999887776554443222 2233455666777888899999998899
Q ss_pred EeccccccEEEccC---CCEEe--cCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC--CCCcEEEECCC
Q psy2951 673 SDSELNEKKIKLQD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSS 743 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~---~~~~~--~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G 743 (1466)
.+ +.+.+.+.+.+ +..+. ||+||||||++|..|+++ |.+ +++.++++.++.++.+.+. .+++|+|||+|
T Consensus 81 ~i-d~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~-g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG 158 (444)
T PRK09564 81 KV-DAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK-NINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAG 158 (444)
T ss_pred EE-ECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 99 88888887754 55666 999999999999999998 865 6888888887777665442 47999999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.|.+|+++++.++++...+++++.+.+.+.+++.||++++++++++++. ++.+..+.++ +.++++
T Consensus 159 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-~~~i~~ 235 (444)
T PRK09564 159 FIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD-KGEYEA 235 (444)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-CCEEEc
Confidence 9999999999999999999999887776568899999999999999999999999999973 3344445554 457999
Q ss_pred CEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|.+|+|+|++|+++++++.|++++++|+|.||++++|+.|||||+|||+..+... .+.+..+++++.|.+||+++|+||
T Consensus 236 d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~~~~~A~~qg~~~a~ni 314 (444)
T PRK09564 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIV-SNKNVYVPLATTANKLGRMVGENL 314 (444)
T ss_pred CEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEecc-CCCeeeccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999888899999999999999999999999876543 344555678899999999999999
Q ss_pred ccCCCcCcc-cCeeeeeecCceeEEeeccCC------CC--ceeEe-c------ccccceEEEEEe--cCCeEEEEEeec
Q psy2951 904 VEKKTSLST-IPFFWTMLFGVGFRFAGYAAG------HT--QVDIV-G------DLEALKFTAYYS--NADKVLAILTVG 965 (1466)
Q Consensus 904 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~-~------~~~~~~~~~~~~--~~~~i~g~~~~g 965 (1466)
++....++. .+.....+++..+.++|+++. .+ ..... . .-+...|.|+++ ++++++|+++++
T Consensus 315 ~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g 394 (444)
T PRK09564 315 AGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIG 394 (444)
T ss_pred cCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEc
Confidence 987554432 111122356777888887642 11 01111 0 012356888888 579999999999
Q ss_pred Cc
Q psy2951 966 MD 967 (1466)
Q Consensus 966 ~~ 967 (1466)
..
T Consensus 395 ~~ 396 (444)
T PRK09564 395 KK 396 (444)
T ss_pred Cc
Confidence 85
No 18
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7.2e-37 Score=369.67 Aligned_cols=373 Identities=20% Similarity=0.265 Sum_probs=272.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-CCCccch----------------hccc--------Ccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-DRVKLSK----------------QLDI--------KAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~-~~~~~~~----------------~~~~--------~~~ 96 (1466)
+++||+||||||||++||..|++.|++|.|++.+.-...-. ..+..++ .+.. +..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 46899999999999999999999999999877532111000 0011111 0000 000
Q ss_pred -----------cccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 97 -----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 97 -----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
.+...+...+++.+++++.++.++.. ..++.+ ++..+.||+||||||++|+.++.+++.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~----~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~- 154 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK----DGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGT- 154 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc----CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeE-
Confidence 11112344566779999999876532 356665 4567999999999999998653456554221
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.++...+. ..+++++|||||++|+|+|..|++.|.+||++++.+.++ +.+++++.+.+.+.|+++||++++++
T Consensus 155 --~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~gI~i~~~~ 228 (450)
T TIGR01421 155 --DSDGFFALE---ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLS 228 (450)
T ss_pred --cHHHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cccCHHHHHHHHHHHHHcCCEEEcCC
Confidence 334433332 235799999999999999999999999999999988776 56899999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCC-cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g-~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
.+++++.++++ ...+.++++ +.+++|.||+|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+|||++.
T Consensus 229 ~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~ 307 (450)
T TIGR01421 229 KPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGK 307 (450)
T ss_pred EEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCC
Confidence 99999865332 234566667 57999999999999999986 577889999999999999999999999999999875
Q ss_pred cCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCC---cccccccceeeEEEEeecC-------CceEE--
Q psy2951 323 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIP---FFWTMLFGVGFRFAGYAAG-------HTQVD-- 386 (1466)
Q Consensus 323 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p---~~~s~~~~~~~~~~G~~~~-------~~~~~-- 386 (1466)
+ ..+..|..||+.+++||++.. ..+..+| |+.+....+| .+.. .+.+.
T Consensus 308 ~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vG-----lte~~a~~~~g~~~~~~~ 371 (450)
T TIGR01421 308 V-----------ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIG-----LTEKEAIEKYGKENIKVY 371 (450)
T ss_pred c-----------ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEe-----CCHHHHHhhcCCCCEEEE
Confidence 4 235679999999999998642 2345566 3444444444 3221 01011
Q ss_pred ---Eec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 ---IVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ---~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 372 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T TIGR01421 372 NSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFA-VAIKMGATKADFDNTVAIHPTSSEEL 446 (450)
T ss_pred EEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHH
Confidence 100 1135688888876 589999999998 55666777 999999876 799999999976
No 19
>KOG1335|consensus
Probab=100.00 E-value=2e-37 Score=327.56 Aligned_cols=383 Identities=22% Similarity=0.307 Sum_probs=287.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC--------CCC---------CCCCccc---hhccc--------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLP---------YDRVKLS---KQLDI-------- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~--------~~~---------~~~~~~~---~~~~~-------- 93 (1466)
..+||+|||+||+|..||..+++.|++...++....- ..| +.+.... +..+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 5799999999999999999999999998887653321 011 0000000 00000
Q ss_pred ----------CcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCC
Q psy2951 94 ----------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 161 (1466)
Q Consensus 94 ----------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~ 161 (1466)
...++...+...+++.+++++.|...+. ++...++...++ ..+.++++||||||.-.++|.+.-.+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~--~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDe 195 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFL--DPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDE 195 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeec--CCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecC
Confidence 1122333456677888999999987765 445555555555 46899999999999655455554333
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
... -+.+.++.+.. -+++++|||+|++|+|++..+.++|.+||+++-.+...+ .+|.++++..++.|.++|+++
T Consensus 196 kkI--VSStgALsL~~---vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-~mD~Eisk~~qr~L~kQgikF 269 (506)
T KOG1335|consen 196 KKI--VSSTGALSLKE---VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-VMDGEISKAFQRVLQKQGIKF 269 (506)
T ss_pred ceE--EecCCccchhh---CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-ccCHHHHHHHHHHHHhcCcee
Confidence 322 13445555543 357999999999999999999999999999998877664 589999999999999999999
Q ss_pred EcCceEEEEEecCCCCeEEEE----cCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEE
Q psy2951 242 VMKANVSSFEKNEKNDVTAAN----LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYA 315 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~~~~~~v~----~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya 315 (1466)
+++++|...+.+.++.+.... ....++++||.+++++|++|.+.. ++..|++.|.+|++.+|..++|.+|+||+
T Consensus 270 ~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~ 349 (506)
T KOG1335|consen 270 KLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYA 349 (506)
T ss_pred EeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEE
Confidence 999999999988766443221 122357999999999999999885 47788999999999999999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC--CCCCCCC---cccccccceeeE-----EEEeecCCceE
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK--TSLSTIP---FFWTMLFGVGFR-----FAGYAAGHTQV 385 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~p---~~~s~~~~~~~~-----~~G~~~~~~~~ 385 (1466)
+||++..||+.| .|..||..+.+.|.+.. -.|..+| |++|+..++|.. -.|.......+
T Consensus 350 IGDv~~gpMLAh-----------kAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkf 418 (506)
T KOG1335|consen 350 IGDVTLGPMLAH-----------KAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKF 418 (506)
T ss_pred ecccCCcchhhh-----------hhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHhcCcceEeeec
Confidence 999999988754 68889999999999874 4666677 888888777742 11221111112
Q ss_pred EE------ecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 DI------VGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ~~------~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
++ .-..+..+|.+.+.+ +++|+|++++|. .+++++.. .+|+.+.+. .||+|||++|.+
T Consensus 419 pF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~-lAieyGasaeDvarvchaHPTlSEa~ 491 (506)
T KOG1335|consen 419 PFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEAS-LAIEYGASAEDVARVCHAHPTLSEAF 491 (506)
T ss_pred cccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHH-HHHHhCccHHHHhhccCCCCcHHHHH
Confidence 22 223357899999887 489999999999 56777777 999999886 799999999999
No 20
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=9.2e-37 Score=356.23 Aligned_cols=348 Identities=28% Similarity=0.416 Sum_probs=264.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch-----------------hcc-------c
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK-----------------QLD-------I 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~-----------------~~~-------~ 645 (1466)
..+|++||||||||..||.+++++|.+ +.++|+...+++.- |-.++ .++ .
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~k--valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLK--VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCC--EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 469999999999999999999999999 88888874222100 00000 000 1
Q ss_pred Ccccccc-----------cCHhHhhhCCcEEEEceEEEEeccccccEEEccC--CCEEecCEEEEcCCCCCCcCCCCCCC
Q psy2951 646 KADSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD--GTSIDFTKIYLATGSSPRTISQADGV 712 (1466)
Q Consensus 646 ~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~--~~~~~~d~lviAtG~~~~~~~~~~g~ 712 (1466)
+..++.. ....+++..+|+++.++ ...+ + .++|.+.. .++++++++|||||++|+.|+++ +.
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~-~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~-~~ 155 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFV-D--PHTVEVTGEDKETITADNIIIATGSRPRIPPGP-GI 155 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEEC-C--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCC-CC
Confidence 1111111 11234556699999999 6666 5 45555544 47999999999999999999999 88
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 713 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
++...+.+ ++...+. ..+++++|||||++|+|+|..++++|.+|||+++.++++ +.+|+++++.+.+.|++.|++
T Consensus 156 ~~~~~~~s-~~~l~~~---~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-p~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 156 DGARILDS-SDALFLL---ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCeEEec-hhhcccc---cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-CcCCHHHHHHHHHHHHhCCeE
Confidence 75443322 2322222 349999999999999999999999999999999999988 689999999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEECCCCc--EEecCEEEEccccccCcc--ccccCCceeeCCCcEEeCCCCCCCCCCeEEe
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAG 868 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~ 868 (1466)
++++..+++++..+++ ..+.+++++ ++++|.|++|+|++||++ -+++.|++++++|+|.||++++|++|+|||+
T Consensus 231 i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~ 308 (454)
T COG1249 231 ILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAI 308 (454)
T ss_pred EEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEe
Confidence 9999999999854443 467777766 799999999999999998 3799999999999999998888889999999
Q ss_pred ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc-CCC--cCcccCeeeeeecCceeEEeeccCCCC-----ceeEe
Q psy2951 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE-KKT--SLSTIPFFWTMLFGVGFRFAGYAAGHT-----QVDIV 940 (1466)
Q Consensus 869 GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~ 940 (1466)
|||+..+... +.|..||++||.||++ ... .+..+|+.. +....+.++|+++... +..+.
T Consensus 309 GDV~~~~~La-----------h~A~~eg~iaa~~i~g~~~~~~d~~~iP~~i--ft~Peia~VGlte~ea~~~g~~~~~~ 375 (454)
T COG1249 309 GDVIGGPMLA-----------HVAMAEGRIAAENIAGGKRTPIDYRLIPSVV--FTDPEIASVGLTEEEAKEAGIDYKVG 375 (454)
T ss_pred eccCCCcccH-----------hHHHHHHHHHHHHHhCCCCCcCcccCCCEEE--ECCCcceeeeCCHHHHHhcCCceEEE
Confidence 9998877643 7999999999999997 322 366788543 3445577888765211 11000
Q ss_pred -----------cccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 941 -----------GDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 941 -----------~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..-+..+|.|+++ ++++++|+++++...
T Consensus 376 ~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A 416 (454)
T COG1249 376 KFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGA 416 (454)
T ss_pred EeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 0123578999999 468999999999984
No 21
>PLN02507 glutathione reductase
Probab=100.00 E-value=3.4e-36 Score=366.51 Aligned_cols=375 Identities=21% Similarity=0.254 Sum_probs=273.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC-------CCCCCC---C-CCccchhc----------------cc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD-------ENFLPY---D-RVKLSKQL----------------DI 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~-------~~~~~~---~-~~~~~~~~----------------~~ 93 (1466)
..++||+||||||||++||..++++|.+|.|++... ...+.. . .+..++.+ +.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 446899999999999999999999999999988411 110100 0 01111111 01
Q ss_pred C--------ccccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCC
Q psy2951 94 K--------ADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPR 152 (1466)
Q Consensus 94 ~--------~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~ 152 (1466)
. ..++. ..+...+++.+++++.+..... +....++++.+++ .+.||+||||||++|.
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~v--d~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIV--GPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEe--cCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 0 00111 1123445567999999976554 4455667766765 5889999999999997
Q ss_pred CCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHH
Q psy2951 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 232 (1466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~ 232 (1466)
.++ +++.+.. .+.++...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+
T Consensus 181 ~p~-ipG~~~~---~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~ 252 (499)
T PLN02507 181 RPN-IPGKELA---ITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-RGFDDEMRAVVAR 252 (499)
T ss_pred CCC-CCCccce---echHHhhhhhh---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-cccCHHHHHHHHH
Confidence 554 5554332 24455554432 35799999999999999999999999999999988766 4588999999999
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCC
Q psy2951 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNV 310 (1466)
Q Consensus 233 ~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~ 310 (1466)
.|+++||+++++++|++++..++ . ..+.+.+|+++++|.|++++|++||+++ ++..+++++++|+|.||+++||+.
T Consensus 253 ~l~~~GI~i~~~~~V~~i~~~~~-~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~ 330 (499)
T PLN02507 253 NLEGRGINLHPRTNLTQLTKTEG-G-IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNI 330 (499)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCC-e-EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCC
Confidence 99999999999999999986432 2 3456677888999999999999999987 567889999889999999999999
Q ss_pred CCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeEEEEeecC---
Q psy2951 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFRFAGYAAG--- 381 (1466)
Q Consensus 311 ~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~~~G~~~~--- 381 (1466)
|||||+|||++.+. .+..|..||++++.||++... .+..+| |.++....+|+ +..
T Consensus 331 p~IyAiGDv~~~~~-----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGl-----te~ea~ 394 (499)
T PLN02507 331 PSIWAIGDVTNRIN-----------LTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGL-----SEEEAV 394 (499)
T ss_pred CCEEEeeEcCCCCc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeC-----CHHHHH
Confidence 99999999987532 456899999999999987532 334455 33444444443 210
Q ss_pred ---CceE-----EEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCc
Q psy2951 382 ---HTQV-----DIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHR 438 (1466)
Q Consensus 382 ---~~~~-----~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p 438 (1466)
...+ .+.. .....+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++||
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hP 473 (499)
T PLN02507 395 EQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIA-VALKCGATKAQFDSTVGIHP 473 (499)
T ss_pred hccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcCcCCC
Confidence 0001 1110 1124579988886 489999999998 45666666 899988876 899999
Q ss_pred ccchhh
Q psy2951 439 CLGVVL 444 (1466)
Q Consensus 439 ~~~e~~ 444 (1466)
|++|.+
T Consensus 474 t~~E~~ 479 (499)
T PLN02507 474 SAAEEF 479 (499)
T ss_pred ChHHHH
Confidence 999998
No 22
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.6e-36 Score=367.89 Aligned_cols=372 Identities=21% Similarity=0.295 Sum_probs=271.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccch-----------------hcccC-------cc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSK-----------------QLDIK-------AD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~-----------------~~~~~-------~~ 96 (1466)
.++||+||||||||++||..|+++|++|.|++...-....... +..++ .+... ..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 3689999999999999999999999999988753110000000 00000 00000 00
Q ss_pred -----------cccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 97 -----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 97 -----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
.+...+.+.+++.+++++.++.... + .+++++ +++++.||+||||||++|+.++ +++.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v--~--~~~v~~-~g~~~~~d~lViATGs~p~~p~-i~g~~~~~- 155 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFV--D--AHTVEV-NGERYTADHILIATGGRPSIPD-IPGAEYGI- 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--c--CCEEEE-CCEEEEeCEEEEecCCCCCCCC-CCCcceeE-
Confidence 1112233445668999999876543 2 356777 6678999999999999997554 55554332
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++++++
T Consensus 156 --~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 156 --TSDGFFALE---ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-RGFDPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred --chhHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-cccCHHHHHHHHHHHHHCCcEEECCC
Confidence 223333222 235799999999999999999999999999999987665 46789999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
+|.+++.++++.+ .+.+.+|+++++|.||+|+|++|+++. ++..+++++++|+|.||+++||++|+|||+|||++.+
T Consensus 230 ~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~ 308 (450)
T PRK06116 230 VPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV 308 (450)
T ss_pred EEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc
Confidence 9999987543323 466678889999999999999999985 5678899998999999999999999999999998643
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCCC----CCCCCCc---ccccccceeeEEEEeecC------Cc---e---
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPF---FWTMLFGVGFRFAGYAAG------HT---Q--- 384 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~----~~~~~p~---~~s~~~~~~~~~~G~~~~------~~---~--- 384 (1466)
..+..|+.||+.+|+||++... .+..+|+ ..|....+ |.+.. .+ .
T Consensus 309 -----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~v-----Glte~~a~~~~~~~~~~~~~ 372 (450)
T PRK06116 309 -----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTV-----GLTEEEAREQYGEDNVKVYR 372 (450)
T ss_pred -----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEe-----eCCHHHHHHhCCCCcEEEEE
Confidence 3456899999999999997432 3456663 33333333 43220 11 0
Q ss_pred EEEe--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 385 VDIV--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 385 ~~~~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..+. + .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 373 ~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T PRK06116 373 SSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFA-VAIKMGATKADFDNTVAIHPTAAEEF 446 (450)
T ss_pred EecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcccccCCChHHHH
Confidence 1111 0 1135789999886 489999999998 45666776 899988876 799999999987
No 23
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-36 Score=363.73 Aligned_cols=391 Identities=21% Similarity=0.271 Sum_probs=276.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-CCCCCC-Cccchhc----------------cc-------Ccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-FLPYDR-VKLSKQL----------------DI-------KAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-~~~~~~-~~~~~~~----------------~~-------~~~ 96 (1466)
.++||+||||||||++||..|+++|.+|.|++..+.- ...... +..++.+ .. +..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 4699999999999999999999999999987753211 000000 1111110 00 011
Q ss_pred ccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCC-c
Q psy2951 97 SIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN-K 162 (1466)
Q Consensus 97 ~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~-~ 162 (1466)
.+. ......+++.+++++.++..+. +....++...++ .++.||+||||||++|+.+|.+++.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~ 160 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPR 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCc
Confidence 111 1122345677999999987654 332333444455 47999999999999998666555432 2
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
++ +..+...+. ..+++++|||+|++|+|+|..++++|.+||++++.+.+++ .+++++.+.+.+.|+++ |+++
T Consensus 161 v~---~~~~~~~~~---~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~-v~i~ 232 (471)
T PRK06467 161 IW---DSTDALELK---EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-AADKDIVKVFTKRIKKQ-FNIM 232 (471)
T ss_pred EE---ChHHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-cCCHHHHHHHHHHHhhc-eEEE
Confidence 22 344554443 2357999999999999999999999999999999887764 58899999999999988 9999
Q ss_pred cCceEEEEEecCCCCeEEEEcCC--C--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEe
Q psy2951 243 MKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 316 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~ 316 (1466)
+++++++++.+++ .+ .+.+.+ + +++++|.||+|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+
T Consensus 233 ~~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAi 310 (471)
T PRK06467 233 LETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAI 310 (471)
T ss_pred cCCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEe
Confidence 9999999986532 22 233322 2 46999999999999999985 467789999999999999999999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC------c----e
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH------T----Q 384 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~------~----~ 384 (1466)
|||++.+ ..+..|..||+.++.||++.... +..+|+. -.....+.++|.+... + .
T Consensus 311 GDv~~~~-----------~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~ea~~~g~~~~~~~ 377 (471)
T PRK06467 311 GDIVGQP-----------MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPEVAWVGLTEKEAKEEGIEYETAT 377 (471)
T ss_pred hhhcCCc-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCceeEEECCHHHHHhcCCCeEEEE
Confidence 9998654 24568999999999999976543 3455532 1222334444543210 0 1
Q ss_pred EEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--ccc
Q psy2951 385 VDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKL 447 (1466)
Q Consensus 385 ~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~ 447 (1466)
..+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+ ++.
T Consensus 378 ~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a-~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 456 (471)
T PRK06467 378 FPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIG-LAIEMGCDAEDIALTIHAHPTLHESVGLAAE 456 (471)
T ss_pred EecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 11110 1135789988886 489999999998 45666666 899998875 789999999988 444
Q ss_pred CCCCccccCCC
Q psy2951 448 DYHGTITISPN 458 (1466)
Q Consensus 448 ~~~~~~~~~~~ 458 (1466)
.+.++.+|.|.
T Consensus 457 ~~~~~~~~~~~ 467 (471)
T PRK06467 457 AFEGSITDLPN 467 (471)
T ss_pred hhcCCcccCCC
Confidence 55666677654
No 24
>PLN02546 glutathione reductase
Probab=100.00 E-value=6.8e-36 Score=363.54 Aligned_cols=376 Identities=18% Similarity=0.257 Sum_probs=271.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc------CC-CCCC----CCCCccchh----------------ccc--
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT------DE-NFLP----YDRVKLSKQ----------------LDI-- 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~------~~-~~~~----~~~~~~~~~----------------~~~-- 93 (1466)
+|||+||||||||+.||..++++|.+|.|+|.. ++ ..+. ..-+..++. +..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 589999999999999999999999999998841 00 1000 000000111 000
Q ss_pred -----------------CcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCC
Q psy2951 94 -----------------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ 156 (1466)
Q Consensus 94 -----------------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~ 156 (1466)
...++...+...+++.+++++.+.....+ . .++.+ +++.+.||+||||||++|..+ .
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd--~--~~V~v-~G~~~~~D~LVIATGs~p~~P-~ 232 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVD--P--HTVDV-DGKLYTARNILIAVGGRPFIP-D 232 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEcc--C--CEEEE-CCEEEECCEEEEeCCCCCCCC-C
Confidence 01112233455567789999998876543 2 45655 567899999999999999754 4
Q ss_pred CCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHh
Q psy2951 157 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 236 (1466)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~ 236 (1466)
+++.+.++ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|++
T Consensus 233 IpG~~~v~---~~~~~l~~~---~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~~~d~~~~~~l~~~L~~ 305 (558)
T PLN02546 233 IPGIEHAI---DSDAALDLP---SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSL 305 (558)
T ss_pred CCChhhcc---CHHHHHhcc---ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-cccCHHHHHHHHHHHHH
Confidence 56654322 344444332 246899999999999999999999999999999987766 46889999999999999
Q ss_pred CCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEE
Q psy2951 237 KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 314 (1466)
Q Consensus 237 ~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iy 314 (1466)
+||++++++.+.+++..+++.+ .+.+++++...+|.||+++|++||+++ ++..|++++++|+|.||+++||++|+||
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IY 384 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIW 384 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEE
Confidence 9999999999999976433333 355555555568999999999999986 5778899988899999999999999999
Q ss_pred EecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeEE-----EEeecCCc
Q psy2951 315 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFRF-----AGYAAGHT 383 (1466)
Q Consensus 315 a~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~~-----~G~~~~~~ 383 (1466)
|+|||++.+ ..+..|..||+.+|.||++... .+..+| |.++....+|+.. .|......
T Consensus 385 AaGDv~~~~-----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~ 453 (558)
T PLN02546 385 AVGDVTDRI-----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVF 453 (558)
T ss_pred EeeccCCCc-----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEE
Confidence 999998754 3456899999999999997542 345666 3444544444310 00000000
Q ss_pred eEEEe------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 QVDIV------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 ~~~~~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+. -.....+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 454 ~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a-~ai~~~~t~~dl~~~~~~hPT~~E~~ 528 (558)
T PLN02546 454 TANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFA-VAVKAGLTKADFDATVGIHPTAAEEF 528 (558)
T ss_pred EEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHH
Confidence 00111 11134689988875 489999999998 55667777 999999876 799999999998
No 25
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2e-35 Score=361.08 Aligned_cols=378 Identities=20% Similarity=0.317 Sum_probs=268.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------cc--------cCcc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LD--------IKAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~--------~~~~ 96 (1466)
.++||+||||||||++||..|++.|+++.|++...-...-... +..++. ++ .+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 4699999999999999999999999999988754211100000 000110 00 1111
Q ss_pred cc-----------cccChhhhhcC-CeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEE
Q psy2951 97 SI-----------LLRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 164 (1466)
Q Consensus 97 ~~-----------~~~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~ 164 (1466)
.+ ...+..++++. +++++.++.++. +.+++.+ ++.++.||+||||||++|+.++ +++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~----~~~~v~v-~~~~~~~d~lViATGs~p~~p~-i~G~~~~~ 157 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE----SPNTVRV-GGETLRAKRIFINTGARAAIPP-IPGLDEVG 157 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc----cCCEEEE-CcEEEEeCEEEEcCCCCCCCCC-CCCCCcCc
Confidence 11 12334556666 999999987653 2356666 4567999999999999998654 55554322
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q psy2951 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244 (1466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~ 244 (1466)
.+ +..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.|++.||+++++
T Consensus 158 ~~-~~~~~~~~~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~ 232 (463)
T PRK06370 158 YL-TNETIFSLD---ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-REDEDVAAAVREILEREGIDVRLN 232 (463)
T ss_pred eE-cchHhhCcc---ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-ccCHHHHHHHHHHHHhCCCEEEeC
Confidence 22 223333222 2358999999999999999999999999999999887664 568889999999999999999999
Q ss_pred ceEEEEEecCCCCeEEEEc-CCCcEEeccEEEEeeccccCcc-c-cccCCceecCCccEEECCCCCcCCCCEEEeccccc
Q psy2951 245 ANVSSFEKNEKNDVTAANL-DNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 321 (1466)
Q Consensus 245 ~~v~~i~~~~~~~~~~v~~-~~g~~i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 321 (1466)
++|.+++.++++....+.. +++.++++|.||+|+|++||++ + ++..|++++++|+|.||+++||+.|+|||+|||+.
T Consensus 233 ~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~ 312 (463)
T PRK06370 233 AECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNG 312 (463)
T ss_pred CEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCC
Confidence 9999998654222122222 3346799999999999999998 4 57788999999999999999999999999999986
Q ss_pred ccCccCCCCcceeccHHHHHHHHHHHHHHhcCC-CC--CCCCCCcccccccceeeEEEEeecC-----CceE-----EEe
Q psy2951 322 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KT--SLSTIPFFWTMLFGVGFRFAGYAAG-----HTQV-----DIV 388 (1466)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~--~~~~~p~~~s~~~~~~~~~~G~~~~-----~~~~-----~~~ 388 (1466)
.+. ....|..||+++++||++. .. .+..+|+. -.....+.++|.+.. ..++ .+.
T Consensus 313 ~~~-----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~ 379 (463)
T PRK06370 313 RGA-----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--TYTDPPLARVGMTEAEARKSGRRVLVGTRPMT 379 (463)
T ss_pred Ccc-----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--EEcCCCcEeeeCCHHHHHHcCCCeEEEEEecC
Confidence 542 3457999999999999875 22 23344431 111223444454321 0011 111
Q ss_pred ------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
-.-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 380 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 449 (463)
T PRK06370 380 RVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEIL-DAMYAGAPYTTLSRAIHIHPTVSELI 449 (463)
T ss_pred cchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCcccCCChHHHH
Confidence 01135789999887 489999999998 55666666 999998876 899999999988
No 26
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.4e-35 Score=358.08 Aligned_cols=373 Identities=20% Similarity=0.269 Sum_probs=269.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhc-CCCCcEEEEcC------CCCCC----CCCCccchhc----------------cc-
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITD------ENFLP----YDRVKLSKQL----------------DI- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~-g~~v~i~~~~~------~~~~~----~~~~~~~~~~----------------~~- 93 (1466)
+++||+||||||||+.||..++++ |.+|.|++.+. +..+. ..-+..++.+ ..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 579999999999999999999997 89999987530 01010 0001111110 00
Q ss_pred --------Ccc-----------cccccChhhhhc-CCeEEEeCceEEEeccccccEEEecC--------CcEEecCEEEE
Q psy2951 94 --------KAD-----------SILLRTEEFYKD-NDIHVIKGKKIISDSELNEKKIKLQD--------GTSIDFTKIYL 145 (1466)
Q Consensus 94 --------~~~-----------~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~~~v~~~~--------~~~~~~d~lvi 145 (1466)
+.. .+.....+++++ .+++++.|...+.+ .+++.+.. .+.+.||+|||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~----~~~v~V~~~~~~~~~~~~~~~~d~lII 157 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED----KNVVLVRESADPKSAVKERLQAEHILL 157 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc----CCEEEEeeccCCCCCcceEEECCEEEE
Confidence 000 111122334555 49999999977653 24555531 24799999999
Q ss_pred ccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC---CCEEEEEeecCccccccc
Q psy2951 146 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 146 AtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~ 222 (1466)
|||++|..++ +++.+.++ +.++...+. ..+++++|||||++|+|+|..+..+ |.+||++++.+.++ +.+
T Consensus 158 ATGs~p~~p~-i~G~~~~~---~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~~~ 229 (486)
T TIGR01423 158 ATGSWPQMLG-IPGIEHCI---SSNEAFYLD---EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-RGF 229 (486)
T ss_pred ecCCCCCCCC-CCChhhee---chhhhhccc---cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-ccc
Confidence 9999997554 56654433 334444333 2468999999999999999877655 99999999988776 568
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccE
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAV 300 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i 300 (1466)
++++.+.+.+.|+++||++++++.+++++.++++ ...+.+.+++++++|.|++|+|++||++++ +..+++++++|+|
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I 308 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAI 308 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCE
Confidence 9999999999999999999999999999865332 334566678899999999999999999864 6788999989999
Q ss_pred EECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeE
Q psy2951 301 VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFR 374 (1466)
Q Consensus 301 ~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~ 374 (1466)
.||+++||+.|||||+|||++.++ .+..|..||+.+++||++... .+..+| |..+....+|+
T Consensus 309 ~Vd~~l~Ts~~~IyA~GDv~~~~~-----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGl- 376 (486)
T TIGR01423 309 QVDEFSRTNVPNIYAIGDVTDRVM-----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGL- 376 (486)
T ss_pred ecCCCCcCCCCCEEEeeecCCCcc-----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeC-
Confidence 999999999999999999987543 345799999999999997532 344566 33444444443
Q ss_pred EEEeecC-----Cce-----EE-------EecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-
Q psy2951 375 FAGYAAG-----HTQ-----VD-------IVGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS- 432 (1466)
Q Consensus 375 ~~G~~~~-----~~~-----~~-------~~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~- 432 (1466)
+.. ... .. +.+.....+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+.
T Consensus 377 ----te~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~-~ai~~~~t~~ 451 (486)
T TIGR01423 377 ----VEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVG-ICLKLNAKIS 451 (486)
T ss_pred ----CHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHH
Confidence 221 000 00 1111123578888886 489999999998 55667777 999988775
Q ss_pred ----ccccCcccchhh
Q psy2951 433 ----LPHSHRCLGVVL 444 (1466)
Q Consensus 433 ----~~~~~p~~~e~~ 444 (1466)
++|+|||++|.+
T Consensus 452 dl~~~~~~hPt~sE~~ 467 (486)
T TIGR01423 452 DFYNTIGVHPTSAEEL 467 (486)
T ss_pred HHhhcccCCCCcHHHH
Confidence 799999999988
No 27
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=4.1e-36 Score=347.36 Aligned_cols=410 Identities=23% Similarity=0.350 Sum_probs=336.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCC-CccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGF-TGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+.+++|||.|+||..+...+.+... ...|+++..+++..|++..++..+. .+.+++.....+|++++||+++.++.|
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 5789999999999999999888433 4679999999999999999998876 577888888999999999999999999
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
+.+ |+.++.|+++.|.++.||+|||||||.|+.+++| |.+ +++.+++++|+..+.......++.+|||||..|+|+
T Consensus 83 ~~i-dr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiP-G~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEa 160 (793)
T COG1251 83 IQI-DRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEA 160 (793)
T ss_pred EEe-ccCcceEEccCCcEeecceeEEecCccccccCCC-CCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHH
Confidence 999 9999999999999999999999999999999999 888 999999999998887776667778999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|...|.++++++..+.++.+++++.....|++.++++|++++++...+++.. .+.+..+.++||..+++|.||+|
T Consensus 161 A~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a 238 (793)
T COG1251 161 ARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMA 238 (793)
T ss_pred HHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEe
Confidence 9999999999999999999999999999999999999999999999999988872 66788999999999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT- 908 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~- 908 (1466)
+|.+||.++..++|+.+++ .|.||++|||++|+|||+|+|+......+ ++...+..|++++|+++++...
T Consensus 239 ~GIrPn~ela~~aGlavnr--GIvvnd~mqTsdpdIYAvGEcae~~g~~y-------GLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 239 VGIRPNDELAKEAGLAVNR--GIVVNDYMQTSDPDIYAVGECAEHRGKVY-------GLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred cccccccHhHHhcCcCcCC--CeeecccccccCCCeeehhhHHHhcCccc-------eehhHHHHHHHHHHHHhccCccc
Confidence 9999999999999999988 59999999999999999999998866552 4667899999999999998755
Q ss_pred cCc-ccCeeeeeecCceeEEeeccC--CCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhhhhh----hhhhh
Q psy2951 909 SLS-TIPFFWTMLFGVGFRFAGYAA--GHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAER----NIYAV 981 (1466)
Q Consensus 909 ~~~-~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~~~g----~~~a~ 981 (1466)
.|. .+++....+.|..+-..|.-+ .-.+.+.-.|.....|.++++++|+++|+...|....--++.+- .-...
T Consensus 310 ~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt~d~~~l~~li~~~~~~se 389 (793)
T COG1251 310 AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISE 389 (793)
T ss_pred ccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEeecccchHHHHHHhcCCCccc
Confidence 343 333332234455554555332 12233444455566789999999999999999987655554321 00000
Q ss_pred ---cCCCCCC-CccccceeecCCEEEcCCCCceeecCCCccccC
Q psy2951 982 ---GTKCSHY-GAPLVKGSLGDGRVRCPWHGACFNIATGDIEDF 1021 (1466)
Q Consensus 982 ---~~~C~h~-g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~ 1021 (1466)
...-|+. ..++.-..+.++...|. |+++..|+++..
T Consensus 390 ~r~~li~~~~~~~~~~v~~lpd~~~IC~----Cn~VtKG~I~~a 429 (793)
T COG1251 390 IRDTLILPQGSAPSLGVAALPDSAQICG----CNGVTKGAIIGA 429 (793)
T ss_pred cchhhccccccCCccchhhCCCCCeeec----CCCccHHHHHHH
Confidence 0011221 33344455667888896 555678888764
No 28
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1e-35 Score=360.71 Aligned_cols=372 Identities=19% Similarity=0.254 Sum_probs=268.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccchh----------------cccC-----------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQ----------------LDIK----------- 94 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~~----------------~~~~----------- 94 (1466)
++||+||||||||++||..++++|++|.|++.+.-...- ...+..++. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL 81 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence 589999999999999999999999999998753211000 000111110 0000
Q ss_pred -------cccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEec
Q psy2951 95 -------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLR 167 (1466)
Q Consensus 95 -------~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~ 167 (1466)
...+...+...+++.+++++.++.... +.....+. .++..+.||+||||||++|..++ +++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~-i~G~~~~~--- 154 (446)
T TIGR01424 82 LQKKDDEIARLSGLYKRLLANAGVELLEGRARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN-LPGHELGI--- 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC-CCCcccee---
Confidence 011222344556778999999875443 33323332 35678999999999999997554 55544322
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++++
T Consensus 155 ~~~~~~~l~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 155 TSNEAFHLP---TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-RGFDDDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred chHHhhccc---ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-cccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 334444333 236799999999999999999999999999999988765 4578899999999999999999999999
Q ss_pred EEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccccCc
Q psy2951 248 SSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLH 325 (1466)
Q Consensus 248 ~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 325 (1466)
.+++..+++ ..+.+.+++++++|.||+|+|++||++. ++..+++++++|+|.||+++||+.|||||+|||++.+
T Consensus 231 ~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-- 306 (446)
T TIGR01424 231 TSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRI-- 306 (446)
T ss_pred EEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCc--
Confidence 999764322 3455667889999999999999999985 5778899988899999999999999999999998643
Q ss_pred cCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCc---ccccccceeeEEEEeecC------CceE-----EEe
Q psy2951 326 SFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPF---FWTMLFGVGFRFAGYAAG------HTQV-----DIV 388 (1466)
Q Consensus 326 ~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~---~~s~~~~~~~~~~G~~~~------~~~~-----~~~ 388 (1466)
..+..|..||++++.|+++.. ..+..+|+ ..++.. ++|.+.. ...+ .+.
T Consensus 307 ---------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia-----~vG~te~~a~~~~~~~~~~~~~~~~ 372 (446)
T TIGR01424 307 ---------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLG-----TVGLTEEEAREKFTGDILVYRAGFR 372 (446)
T ss_pred ---------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhE-----EEECCHHHHHhhcCCCEEEEEEecC
Confidence 345689999999999999743 23345663 333333 3343220 0111 110
Q ss_pred c------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 G------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++|+|||++|.+
T Consensus 373 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 442 (446)
T TIGR01424 373 PMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIA-IALKMGATKADFDSTVGIHPSSAEEF 442 (446)
T ss_pred chHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhccccCCChHHHH
Confidence 0 1134689998886 489999999998 55666666 999999876 899999999987
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=3.2e-35 Score=357.22 Aligned_cols=388 Identities=18% Similarity=0.214 Sum_probs=269.9
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC-CCccchh----------------ccc------Ccc-
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-RVKLSKQ----------------LDI------KAD- 96 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~-~~~~~~~----------------~~~------~~~- 96 (1466)
..++||+||||||||++||..+++.|.+|.|+|.+.-...-.. .+..++. ++. +..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 4578999999999999999999999999988875421100000 0000000 000 000
Q ss_pred ----------cccccChhhhhcCCeEEEeCceEEEeccc------------------cccEE------EecCCcEEecCE
Q psy2951 97 ----------SILLRTEEFYKDNDIHVIKGKKIISDSEL------------------NEKKI------KLQDGTSIDFTK 142 (1466)
Q Consensus 97 ----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~------------------~~~~v------~~~~~~~~~~d~ 142 (1466)
.+...+.+.+++.+|+++.|+..+..... ...++ .++++.+++||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~ 205 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN 205 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence 11122344566789999999986653210 01112 124567899999
Q ss_pred EEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccccccc
Q psy2951 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 143 lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~ 222 (1466)
||||||++|+.+ .+++.+.++ +.++...+. .+++++|||+|++|+|+|..++++|.+||++++.+.++ +.+
T Consensus 206 lVIATGS~P~~P-~IpG~~~v~---ts~~~~~l~----~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-~~~ 276 (561)
T PTZ00058 206 ILIAVGNKPIFP-DVKGKEFTI---SSDDFFKIK----EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-RKF 276 (561)
T ss_pred EEEecCCCCCCC-CCCCceeEE---EHHHHhhcc----CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-ccC
Confidence 999999999754 456554322 334444332 26899999999999999999999999999999988766 568
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccC--CceecCCccE
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAV 300 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~--gl~~~~~g~i 300 (1466)
++++.+.+.+.|+++||++++++.+.++++++++.+..+..++++++++|.|++|+|++||++++... ++. +++|+|
T Consensus 277 d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I 355 (561)
T PTZ00058 277 DETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYI 355 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeE
Confidence 89999999999999999999999999998654333433333444579999999999999999976433 333 457899
Q ss_pred EECCCCCcCCCCEEEecccccccC------------------cc----CCCCcc-eeccHHHHHHHHHHHHHHhcCCC--
Q psy2951 301 VVNEYLETNVPGVYAGGDIAYAPL------------------HS----FYNKNA-SIGHYQLAQYHGRIAALNMVEKK-- 355 (1466)
Q Consensus 301 ~vd~~~~t~~~~iya~GD~~~~~~------------------~~----~~g~~~-~~~~~~~A~~~g~~aa~~i~~~~-- 355 (1466)
.||+++||+.|+|||+|||+..+. +. ..+.+. .+..+..|..||++++.||++..
T Consensus 356 ~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~ 435 (561)
T PTZ00058 356 KVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSR 435 (561)
T ss_pred EECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999998321 11 112222 36778889999999999999752
Q ss_pred -CCCCCCC---cccccccceeeEEEEeecC-------CceE-----EEe--------cc--cCCCeEEEEEEc--CCEEE
Q psy2951 356 -TSLSTIP---FFWTMLFGVGFRFAGYAAG-------HTQV-----DIV--------GD--LEALKFTAYYSN--ADKVL 407 (1466)
Q Consensus 356 -~~~~~~p---~~~s~~~~~~~~~~G~~~~-------~~~~-----~~~--------g~--~~~~~~~~~~~~--~~~i~ 407 (1466)
.++..+| |..++...+|+ +.. .+.+ .+. .. ....+|.+++.+ +++|+
T Consensus 436 ~~~~~~ip~~vft~peiA~vGl-----te~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~IL 510 (561)
T PTZ00058 436 TTNYKLIPSVIFSHPPIGTIGL-----SEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIK 510 (561)
T ss_pred ccCCCCCCeEEeCCchheeeeC-----CHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEE
Confidence 2344566 33444444443 221 0111 110 00 124688888876 48999
Q ss_pred EEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 408 AILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 408 g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
|++++|. +++++.++ .+|+++.+. +++.|||++|.+
T Consensus 511 G~~ivG~~a~elI~~~a-~ai~~~~t~~dl~~~~~~hPt~~e~~ 553 (561)
T PTZ00058 511 GLHIVGLNADEILQGFA-VALKMNATKADFDETIPIHPTAAEEF 553 (561)
T ss_pred EEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhcccCCCChHHHH
Confidence 9999998 45666666 999988775 899999999987
No 30
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=3.1e-35 Score=360.43 Aligned_cols=374 Identities=20% Similarity=0.262 Sum_probs=271.6
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--CCCCCCccchhc-----------------------ccCc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--LPYDRVKLSKQL-----------------------DIKA 95 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--~~~~~~~~~~~~-----------------------~~~~ 95 (1466)
+.++||+||||||||++||+.|++.|+++.|++....-. .....+..++.+ ..+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 456999999999999999999999999998877532210 001111111110 0001
Q ss_pred ccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCC-C
Q psy2951 96 DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGV-N 161 (1466)
Q Consensus 96 ~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~-~ 161 (1466)
.++ ...+.+++++.+++++.++.... +....++...++. .+.||+||||||++|..++..+.. .
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~ 160 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFV--DPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHP 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCC
Confidence 111 11233456678999999886543 3344555555554 699999999999999866544322 2
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
.++ +..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.++++||++
T Consensus 161 ~v~---~~~~~~~~~---~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 161 RIY---DSDSILSLD---HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-SFLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred eEE---cHHHhhchh---hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-CcCCHHHHHHHHHHHHHcCCEE
Confidence 222 333333332 246899999999999999999999999999999988776 4688999999999999999999
Q ss_pred EcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
++++.+++++.+++ . ..+.+.+++++++|.|++|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+|||
T Consensus 234 ~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~ 311 (461)
T PRK05249 234 RHNEEVEKVEGGDD-G-VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV 311 (461)
T ss_pred EECCEEEEEEEeCC-e-EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeec
Confidence 99999999986432 2 3355677888999999999999999985 567889999889999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCc---ccccccceeeEEEEeecC------C------
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPF---FWTMLFGVGFRFAGYAAG------H------ 382 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~---~~s~~~~~~~~~~G~~~~------~------ 382 (1466)
++.+ ..+..|..||+.+|.||++... .+..+|. ..++...+| .+.. .
T Consensus 312 ~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG-----~te~~a~~~g~~~~~~~ 375 (461)
T PRK05249 312 IGFP-----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVG-----KTEQELTAAKVPYEVGR 375 (461)
T ss_pred CCCc-----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEec-----CCHHHHHHcCCCeEEEE
Confidence 8654 2456799999999999997543 3445563 233333333 3220 0
Q ss_pred ------ceEEEecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 383 ------TQVDIVGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 383 ------~~~~~~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+..+. .+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~~--~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~Pt~~e~~ 449 (461)
T PRK05249 376 ARFKELARAQIA--GDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQ-AIMEQKGTIEYFVNTTFNYPTMAEAY 449 (461)
T ss_pred Eccccccceeec--CCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCccCCCCHHHHH
Confidence 011111 135689988886 489999999998 45666666 999988876 899999999987
No 31
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-36 Score=341.16 Aligned_cols=308 Identities=21% Similarity=0.351 Sum_probs=261.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhC-CcEEEEceEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN-DIHVIKGKKI 671 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-gv~~~~~~~v 671 (1466)
.+++|||||||++|+.+|..|.+...+++|+++++.+++.+.+.......+ .+..++...+...++.. ++++++++ |
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~-V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE-V 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE-E
Confidence 368999999999999999999997425779999999998887655444444 66778888888888855 59999999 9
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccCC--------CC-----CcE
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT--------PE-----SNV 737 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~--------~~-----~~v 737 (1466)
+.| |.++++|++.++..+.||+||||+|+++..+.+| |.. ..+.+++++++.+++.++. .. .++
T Consensus 81 ~~I-D~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti 158 (405)
T COG1252 81 TDI-DRDAKKVTLADLGEISYDYLVVALGSETNYFGIP-GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTI 158 (405)
T ss_pred EEE-cccCCEEEeCCCccccccEEEEecCCcCCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEE
Confidence 999 9999999999888999999999999999999999 854 8889999999988765542 12 269
Q ss_pred EEECCChHHHHHHHHHhccC-------------CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEe
Q psy2951 738 VVIGSSFIGMEAAAFCASKV-------------KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 804 (1466)
Q Consensus 738 vVvG~G~~g~e~A~~l~~~g-------------~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 804 (1466)
+|+|||++|+|+|.+|+++- .+|+|+++.++.+ +.++++++.+.++.|+++||++++++.|+++++
T Consensus 159 ~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-p~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~ 237 (405)
T COG1252 159 VIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-PMFPPKLSKYAERALEKLGVEVLLGTPVTEVTP 237 (405)
T ss_pred EEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-cCCCHHHHHHHHHHHHHCCCEEEcCCceEEECC
Confidence 99999999999998887542 3899999999988 689999999999999999999999999999994
Q ss_pred cCCCceEEEECCCCc-EEecCEEEEccccccCcccccc-CCceeeCCCcEEeCCCCCC-CCCCeEEeccccccCCcccCC
Q psy2951 805 NEKNDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYN 881 (1466)
Q Consensus 805 ~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~ 881 (1466)
+ .+.+++|. +|++|++||++|.+++ +++++ .+++.|+.|++.||++|++ ++|+|||+|||+..+..
T Consensus 238 ~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---- 306 (405)
T COG1252 238 D------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---- 306 (405)
T ss_pred C------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----
Confidence 3 57788887 4999999999999998 57776 4788899999999999996 69999999999988763
Q ss_pred ceeeeccHHHHHHHHHHHHHHhccCCCcCcccCeee
Q psy2951 882 KNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFW 917 (1466)
Q Consensus 882 ~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~~~~~ 917 (1466)
.+.++.++.|.+||+.+|.||.......+..||-+
T Consensus 307 -~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 307 -RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 23457889999999999999987665555566433
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.9e-35 Score=356.76 Aligned_cols=374 Identities=24% Similarity=0.315 Sum_probs=260.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchhc-----------------ccC------cccc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQL-----------------DIK------ADSI 98 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~~-----------------~~~------~~~~ 98 (1466)
++||+||||||||++||.+|++.|.+|.|++.+.-....... +..++.+ ... ...+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 589999999999999999999999999988743211000000 0001100 000 0000
Q ss_pred c-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 99 L-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 99 ~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
. ......++..+++.+.+...+. +....++...++ .++.||+||||||++|+.+|..+....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~- 160 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVV- 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEE-
Confidence 0 0011223345788877765543 222223333344 36899999999999998665433222233
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+..+..... ..+++++|||+|++|+|+|..++++|.+|+++++.+.+++ .+++++.+.+.+.|+++||++++++
T Consensus 161 --~~~~~~~~~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~gV~i~~~~ 234 (466)
T PRK07818 161 --TYEEQILSR---ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-NEDAEVSKEIAKQYKKLGVKILTGT 234 (466)
T ss_pred --chHHHhccc---cCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-ccCHHHHHHHHHHHHHCCCEEEECC
Confidence 223222111 2357999999999999999999999999999999887764 5688999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEc--CCC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 246 NVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
+|++++.++ +.+ .+.+ .+| +++++|.||+|+|++||+++ ++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 235 ~v~~i~~~~-~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~ 312 (466)
T PRK07818 235 KVESIDDNG-SKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312 (466)
T ss_pred EEEEEEEeC-CeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeec
Confidence 999998643 222 2332 245 47999999999999999986 577889998889999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC----CCCCCC---cccccccceeeEEEEeecC------Cc---
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIP---FFWTMLFGVGFRFAGYAAG------HT--- 383 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~----~~~~~p---~~~s~~~~~~~~~~G~~~~------~~--- 383 (1466)
+..+ ..+..|+.||+.||.||++... .+..+| |+.+... ++|.+.. .+
T Consensus 313 ~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a-----~vGlte~~a~~~g~~~~~ 376 (466)
T PRK07818 313 TAKL-----------QLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVA-----SFGLTEEQAREEGYDVKV 376 (466)
T ss_pred CCCc-----------ccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeE-----EEeCCHHHHHhCCCcEEE
Confidence 8643 3567899999999999997542 344555 3333333 3443221 00
Q ss_pred -eEEEe------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 -QVDIV------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 -~~~~~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+. ...+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++|+|||++|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 452 (466)
T PRK07818 377 AKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELT-LAQKWDLTAEELARNVHTHPTLSEAL 452 (466)
T ss_pred EEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcCccCCCchHHHH
Confidence 00000 01235789998886 489999999998 45666666 899988775 799999999988
No 33
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.2e-35 Score=354.47 Aligned_cols=377 Identities=22% Similarity=0.288 Sum_probs=262.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC-CCC-CCCCCccchhc------------------cc------Cc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-NFL-PYDRVKLSKQL------------------DI------KA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~-~~~-~~~~~~~~~~~------------------~~------~~ 95 (1466)
+++||+||||||||++||..+++.|++|.|++.... ... ....+..++.+ .. +.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 358999999999999999999999999988774221 000 00000011100 00 00
Q ss_pred ccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 96 DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 96 ~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
.++ ......++++.+++++.+...+. +.....+...++. ++.||+||||||++|..+|..+ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~-~~~ 158 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLD--GVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVT-IDN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCC-CCC
Confidence 000 01123345566899998876543 2223344444553 6999999999999987544332 222
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
...+ +..+...+. ..+++++|||+|++|+|+|..++++|.+||++++.+.+++ .+++++.+.+.+.|++.||+++
T Consensus 159 ~~~~-~~~~~~~~~---~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-~~d~~~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 159 QRII-DSTGALSLP---EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-GTDTETAKTLQKALTKQGMKFK 233 (466)
T ss_pred CeEE-CHHHHhCCc---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CCCHHHHHHHHHHHHhcCCEEE
Confidence 2333 334443332 3468999999999999999999999999999999887764 5788999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEEc---CCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEec
Q psy2951 243 MKANVSSFEKNEKNDVTAANL---DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~G 317 (1466)
+++++++++.++++....+.. .+++++++|.|++|+|++||+++ ++..+++++++| +.+|++++|+.|+|||+|
T Consensus 234 ~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~G 312 (466)
T PRK06115 234 LGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIG 312 (466)
T ss_pred ECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEee
Confidence 999999998653221111221 22457999999999999999985 456678887766 678999999999999999
Q ss_pred ccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCc---ccccccceeeEEEEeecCC-----ceE--
Q psy2951 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPF---FWTMLFGVGFRFAGYAAGH-----TQV-- 385 (1466)
Q Consensus 318 D~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~---~~s~~~~~~~~~~G~~~~~-----~~~-- 385 (1466)
||++.+. .+..|..||+.+++||++... ++..+|+ +.++...+| .+... .++
T Consensus 313 D~~~~~~-----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vG-----lte~~a~~~g~~~~~ 376 (466)
T PRK06115 313 DVTSGPM-----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVG-----KTEEQLKAEGRAYKV 376 (466)
T ss_pred ecCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEee-----CCHHHHHHCCCCEEE
Confidence 9997542 456899999999999997643 3455663 444444444 32210 001
Q ss_pred ---EEe------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 ---DIV------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ---~~~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+. -..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++|+|||++|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~dl~~~~~~hPt~~e~~ 452 (466)
T PRK06115 377 GKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFC-VAMEFSASAEDIALTCHPHPTRSEAL 452 (466)
T ss_pred EEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhCccCCCChHHHH
Confidence 000 01235689998886 489999999998 45666666 999988875 799999999988
No 34
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-34 Score=352.68 Aligned_cols=378 Identities=25% Similarity=0.323 Sum_probs=268.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccchh----------------ccc-------Cccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQ----------------LDI-------KADS 97 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~~----------------~~~-------~~~~ 97 (1466)
..+||+||||||||++||..|+++|++|.|++...-.... ...+..++. +.. ...+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKK 82 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHH
Confidence 4689999999999999999999999999887754311100 000111111 000 1111
Q ss_pred ccc-----------cChhhhhcCCeEEEeCceEEEeccccccEEEecC-CcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 98 ILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 98 ~~~-----------~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~-~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
+.. .+...+++.+++++.++.... +....++...+ +..+.||+||||||++|..+|..+. ... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~-~~~-~ 158 (462)
T PRK06416 83 VQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLV--DPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEI-DGR-V 158 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCC-CCC-e
Confidence 111 134456678999999986653 33334444323 3679999999999999976554331 121 1
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.+..+...+. ..+++++|||+|++|+|+|..|++.|.+||++++.+.+++ .+++++.+.+.+.++++||++++++
T Consensus 159 v~~~~~~~~~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~ 234 (462)
T PRK06416 159 IWTSDEALNLD---EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKTGA 234 (462)
T ss_pred EEcchHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-cCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 22445554433 2357999999999999999999999999999999887764 5789999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCC---cEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g---~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
+|++++.+++ .+ .+.+.++ +++++|.||+|+|++|+++++ +..+++++ +|++.||+++||+.|+|||+|||+
T Consensus 235 ~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~ 311 (462)
T PRK06416 235 KAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIV 311 (462)
T ss_pred EEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecC
Confidence 9999986542 22 3444444 679999999999999999875 57788888 799999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCCC--CCCCcccccccceeeEEEEeecCC-----ceEE-----Ee
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAGH-----TQVD-----IV 388 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~--~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~-----~~ 388 (1466)
..+ ..+..|..||+.+|.||++....+ ..+|+ ....+..+..+|.+... .++. +.
T Consensus 312 ~~~-----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~--~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~ 378 (462)
T PRK06416 312 GGP-----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIPA--VTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFA 378 (462)
T ss_pred CCc-----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCe--EEECCCceEEEeCCHHHHHhcCCCeEEEEEecC
Confidence 643 356789999999999999865433 33342 22233344555544311 1110 00
Q ss_pred c------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 G------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+
T Consensus 379 ~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 448 (462)
T PRK06416 379 GNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQ-LAINWEATPEDLALTIHPHPTLSEAL 448 (462)
T ss_pred cChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCccCCCCHHHHH
Confidence 0 1135688888875 589999999998 45666666 899988876 789999999988
No 35
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1e-34 Score=353.12 Aligned_cols=376 Identities=21% Similarity=0.284 Sum_probs=269.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccchhc----------------ccC----------c
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQL----------------DIK----------A 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~~~----------------~~~----------~ 95 (1466)
++||+||||||||++||..++++|.++.+++...-.... ...+..++.+ ... .
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 358999999999999999999999998888754311100 0011111110 000 0
Q ss_pred cc-----------ccccChhhhhcCCeEEEeCceEEEe--ccccccEEEecCCc--EEecCEEEEccCCCCCCCCCC-CC
Q psy2951 96 DS-----------ILLRTEEFYKDNDIHVIKGKKIISD--SELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQA-DG 159 (1466)
Q Consensus 96 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~--~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~-~~ 159 (1466)
.. +...+.+.+++.+++++.++..... .+....++...++. ++.||+||||||++|+.+|.. ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 00 1123345567789999999877633 23333445555665 799999999999999866532 22
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCc
Q psy2951 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 239 (1466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV 239 (1466)
.+.++..+. ...+. ..+++++|||+|++|+|+|..|++.|.+||++++.+.+++ .+++++.+.+.+.|+++||
T Consensus 161 ~~~v~~~~~---~~~~~---~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~L~~~gV 233 (466)
T PRK07845 161 GERILTWRQ---LYDLD---ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-GEDADAAEVLEEVFARRGM 233 (466)
T ss_pred CceEEeehh---hhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-CCCHHHHHHHHHHHHHCCc
Confidence 233444332 22222 1247999999999999999999999999999999887764 4688999999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEec
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~G 317 (1466)
++++++++.+++.++ +.+ .+.+.+|+++++|.|++++|++||+++ ++..+++++++|+|.||++++|+.|||||+|
T Consensus 234 ~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~G 311 (466)
T PRK07845 234 TVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAG 311 (466)
T ss_pred EEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEe
Confidence 999999999997643 223 355667889999999999999999986 5778899998899999999999999999999
Q ss_pred ccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCc---ccccccceeeEEEEeecC------Cc--
Q psy2951 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPF---FWTMLFGVGFRFAGYAAG------HT-- 383 (1466)
Q Consensus 318 D~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~---~~s~~~~~~~~~~G~~~~------~~-- 383 (1466)
||+..+ ..+..|..||+.++.|+++... .+..+|+ ..+....+| .... .+
T Consensus 312 D~~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vG-----lte~~a~~~g~~~~ 375 (466)
T PRK07845 312 DCTGVL-----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVG-----VSQAAIDSGEVPAR 375 (466)
T ss_pred eccCCc-----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeec-----CCHHHHHhCCCceE
Confidence 998753 3456899999999999997542 3345553 223333333 3220 00
Q ss_pred --eEEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 --QVDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 --~~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 452 (466)
T PRK07845 376 TVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIA-LAVQNRLTVDDLAQTFTVYPSLSGSI 452 (466)
T ss_pred EEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcCcCCCCCHHHHH
Confidence 001110 1135689998886 489999999998 45666666 899988775 799999999987
No 36
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-35 Score=336.31 Aligned_cols=308 Identities=22% Similarity=0.346 Sum_probs=256.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCC-cEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDND-IHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~-v~~~~~~~v 1142 (1466)
+++|||||||++|+.+|..|.+...+.+|||||+.++++|. |.|..... .+.+.+..+..+.+...+ ++++.++ |
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~-V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-PLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE-V 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-hhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE-E
Confidence 57899999999999999999987413599999999998875 44444443 456666677777777555 9999998 9
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC--------CC-----CeE
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT--------PE-----SNV 1208 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~--------~~-----~~v 1208 (1466)
++| |+++++|.++++.+++||+||+|+|+++..+.+| |.. ..+.+++++||.++++.+. .. .++
T Consensus 81 ~~I-D~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti 158 (405)
T COG1252 81 TDI-DRDAKKVTLADLGEISYDYLVVALGSETNYFGIP-GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTI 158 (405)
T ss_pred EEE-cccCCEEEeCCCccccccEEEEecCCcCCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEE
Confidence 999 9999999999988999999999999999999999 866 7888999999999887653 11 269
Q ss_pred EEEcCCHHHHHHHHHHhcCC-------------CeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q psy2951 1209 VVIGSSFIGMEAAAFCASKV-------------KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~g-------------~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~ 1275 (1466)
+|+|+|++|.|+|..|+++- .+|+++++.++.++ .+++++++...+.|+++||++++++.|++++
T Consensus 159 ~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~- 236 (405)
T COG1252 159 VIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTPVTEVT- 236 (405)
T ss_pred EEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCceEEEC-
Confidence 99999999999999876651 38999999999997 7899999999999999999999999999998
Q ss_pred cCCCcEEEEEcCCCCe-eecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCCcccc-CCCEEEecccccCCCccCCC
Q psy2951 1276 NEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYN 1352 (1466)
Q Consensus 1276 ~~~g~~~~v~l~~g~~-i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~ 1352 (1466)
.+ .|.+++|.+ |++|.+|+++|.+++ +++++ .|++.|.+|.++||+++++. +|+|||+||||..+..
T Consensus 237 -~~----~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---- 306 (405)
T COG1252 237 -PD----GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---- 306 (405)
T ss_pred -CC----cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----
Confidence 33 288888884 999999999999998 67777 58888888999999999986 9999999999988763
Q ss_pred ceeeeecHHHHHHHHHHHHHHhcCCCCCCCCCccceec
Q psy2951 1353 KNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTM 1390 (1466)
Q Consensus 1353 ~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~ 1390 (1466)
......-+.|.+||+.+|+||..........||-+.+
T Consensus 307 -~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~ 343 (405)
T COG1252 307 -RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKD 343 (405)
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 0112234899999999999999755444455554543
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.7e-34 Score=348.48 Aligned_cols=375 Identities=21% Similarity=0.294 Sum_probs=294.1
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc--C-ccccccc-ChhhhccCCcEEEcCCeEEEeecCCCCeEEe
Q psy2951 1080 TCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI--K-ADSILLR-TEEFYKDNDIHVIKGKKIISDSELNEKKIKL 1155 (1466)
Q Consensus 1080 ~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~--~-~~~~~~~-~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~ 1155 (1466)
+||..|++.+.+.+|||||+++++.|.+..++..... . .+..... ..+++.+++++++.+++|+.+ |+..++|.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~i-d~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEV-NDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEE-ECCCCEEEE
Confidence 4789999887667999999999887765444433221 1 1222222 234558889999999999999 999998888
Q ss_pred cC---CcEEe--cCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhccc--CCCCeEEEEcCCHHHHHHHHHHhc
Q psy2951 1156 QD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHI--TPESNVVVIGSSFIGMEAAAFCAS 1226 (1466)
Q Consensus 1156 ~~---g~~~~--yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~--~~~~~vvVvG~g~~g~e~a~~l~~ 1226 (1466)
.+ +..+. ||+||||||++|+.+++| |++ +++..+++.++.++++.+ ..+++|+|||+|++|+|+|..|++
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~~i~-G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~ 158 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVPNIE-GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE 158 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh
Confidence 63 45677 999999999999999999 875 788899999998887776 357899999999999999999999
Q ss_pred CCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1227 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1227 ~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
.|.+|+++++.+.++.+.+++++.+.+.+.++++||++++++.+++++ . ++.+ +.+.+|+++++|.|++++|..|+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~-~-~~~~--v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE-G-EERV--KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEe-c-CCCE--EEEcCCCEEEeCEEEECCCccCC
Confidence 999999999998776557788899999999999999999999999998 3 3333 56778999999999999999999
Q ss_pred ccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCCC-c
Q psy2951 1307 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTI-P 1385 (1466)
Q Consensus 1307 ~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~-p 1385 (1466)
+++++.+|+.++.+|+|.||++++|+.|+|||+|||+..+... .+.+.....|+.|..||++||+||+|...++... +
T Consensus 235 ~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~-~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~ 313 (427)
T TIGR03385 235 SELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII-TKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLG 313 (427)
T ss_pred HHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc-CCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcce
Confidence 9999999999988899999999999999999999999887654 3555566789999999999999999976666543 3
Q ss_pred cceeccccccEEEEeeCC------CCceE--EEcCC-------cCCceEEEEEEe--CCEEEEEEEecCc---HHHHHHH
Q psy2951 1386 FFWTMLFGVGFRFAGYAA------GHTQV--DIVGD-------LEALKFTAYYSN--ADKVLAILTVGMD---PLAAQFA 1445 (1466)
Q Consensus 1386 ~~w~~~~~~~~~~~g~~~------~~~~~--~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~ 1445 (1466)
..++..++..+..+|+.+ +.+-. ...-. -.+..|++++++ +++++|+..+|.. ..+..+.
T Consensus 314 ~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~ 393 (427)
T TIGR03385 314 TNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLA 393 (427)
T ss_pred eeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHH
Confidence 446778899999999853 22211 11100 012347777774 6999999999986 2233455
Q ss_pred HHHHcCCCCChhcccccC
Q psy2951 1446 ERIKMQKYIQKDQIENNA 1463 (1466)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~~ 1463 (1466)
-+|+.+ ++.++|++..
T Consensus 394 ~ai~~~--~t~~~l~~~~ 409 (427)
T TIGR03385 394 AAIMAG--LTVKDLFFFE 409 (427)
T ss_pred HHHHCC--CCHHHHhhcc
Confidence 567766 5555554433
No 38
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.7e-34 Score=350.61 Aligned_cols=380 Identities=22% Similarity=0.298 Sum_probs=267.9
Q ss_pred CCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC-CCccchh-------------------c-----c
Q psy2951 38 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-RVKLSKQ-------------------L-----D 92 (1466)
Q Consensus 38 ~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~-~~~~~~~-------------------~-----~ 92 (1466)
|+...++||+||||||||++||..|++.|+++.|++...-...-.. .+..++. + .
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 4566789999999999999999999999999888775421000000 0000000 0 0
Q ss_pred cCccccc-------cc-----Chhhhhc-CCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCC
Q psy2951 93 IKADSIL-------LR-----TEEFYKD-NDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 93 ~~~~~~~-------~~-----~~~~~~~-~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~ 157 (1466)
.+...+. .+ ....+++ .+++++.++.... +...++|++.++. +++||+||||||++|+.++ +
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~i--d~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~-i 157 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFV--DERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP-V 157 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEe--cCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC-C
Confidence 0011111 11 1222333 3899999876544 5566788877763 7999999999999998654 5
Q ss_pred CCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhC
Q psy2951 158 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 237 (1466)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~ 237 (1466)
++.+...++ +..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++++. .++ +.+++++.+.+.+.|+++
T Consensus 158 ~G~~~~~~~-~~~~~~~l~---~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l-~~~~~~~~~~l~~~l~~~ 231 (468)
T PRK14694 158 PGLAETPYL-TSTSALELD---HIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVL-SQEDPAVGEAIEAAFRRE 231 (468)
T ss_pred CCCCCCceE-cchhhhchh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCC-CCCCHHHHHHHHHHHHhC
Confidence 554432222 223343332 23579999999999999999999999999999874 343 457889999999999999
Q ss_pred CcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEE
Q psy2951 238 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 315 (1466)
Q Consensus 238 GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya 315 (1466)
||++++++.+++++.++ + ...+.+++ .++++|.||+|+|++||++++ +..+++. ++|+|.||++++|+.|+|||
T Consensus 232 GI~v~~~~~v~~i~~~~-~-~~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 232 GIEVLKQTQASEVDYNG-R-EFILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred CCEEEeCCEEEEEEEcC-C-EEEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEE
Confidence 99999999999997653 2 22344444 479999999999999999875 5567775 46899999999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecC------Cc----
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG------HT---- 383 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~------~~---- 383 (1466)
+|||+..+. .+..|..||+.||.||++.... +..+|.. ...+..+.++|.+.. .+
T Consensus 308 ~GD~~~~~~-----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~~~g~~~~~~ 374 (468)
T PRK14694 308 AGDCTDQPQ-----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQVATVGLSEAEAQAQGYDTDSR 374 (468)
T ss_pred EeecCCCcc-----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCCeEEeeCCHHHHHHcCCceEEE
Confidence 999987543 3567999999999999876433 3344422 222333445554331 11
Q ss_pred eEEEe--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 QVDIV--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 ~~~~~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+. + ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 449 (468)
T PRK14694 375 TLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAV-MALRARMTVNEIADELFPYLTMVEGL 449 (468)
T ss_pred EEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhccccCCCchHHHH
Confidence 01111 1 1135789998886 489999999997 56776666 999999876 899999999988
No 39
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.8e-34 Score=349.74 Aligned_cols=348 Identities=20% Similarity=0.287 Sum_probs=260.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC---------CCCCCCC----Cccchhc----------------
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDR----VKLSKQL---------------- 643 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~---------~~~~~~~----~~~~~~~---------------- 643 (1466)
...+||+||||||||+.||..++++|.+ |.++|+. ..+++.- +-.++.+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~--V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAK--VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999999998 6777741 1122110 0011110
Q ss_pred c--------cCccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCC
Q psy2951 644 D--------IKADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSS 702 (1466)
Q Consensus 644 ~--------~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~ 702 (1466)
+ .+...+..+ +...+.+.+|+++.++ +..+ +.....+.+.+|+ ++.||+||||||++
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~-a~~v-d~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGE-GKIV-GPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEE-EEEe-cCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 0 011111111 1233455799999997 7778 8877888877775 58899999999999
Q ss_pred CCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH
Q psy2951 703 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782 (1466)
Q Consensus 703 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~ 782 (1466)
|..|++| |.+.. .+.+++..+.. .+++++|||+|++|+|+|..|++.|.+|+|+++.++++ +.+++++.+.+
T Consensus 179 p~~p~ip-G~~~~---~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l 250 (499)
T PLN02507 179 AQRPNIP-GKELA---ITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-RGFDDEMRAVV 250 (499)
T ss_pred CCCCCCC-Cccce---echHHhhhhhh---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-cccCHHHHHHH
Confidence 9999999 86532 24455544432 37899999999999999999999999999999998776 45899999999
Q ss_pred HHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCC
Q psy2951 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLET 860 (1466)
Q Consensus 783 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t 860 (1466)
.+.|+++||++++++++++++.. ++. ..+.+.+|+++++|.|++++|++|++++ ++..|++++++|+|.||+++||
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T 328 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKT-EGG-IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT 328 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEe-CCe-EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC
Confidence 99999999999999999999843 223 3466778889999999999999999986 5788999999999999999999
Q ss_pred CCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc---CcccCeeeeeecCc-eeEEeeccCC---
Q psy2951 861 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS---LSTIPFFWTMLFGV-GFRFAGYAAG--- 933 (1466)
Q Consensus 861 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~---~~~~~~~~~~~~~~-~~~~~g~~~~--- 933 (1466)
+.|+|||+|||+..+. .++.|.+||+++|+||++.... +..+| ..+|.. .+..+|+++.
T Consensus 329 s~p~IyAiGDv~~~~~-----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p---~~if~~p~ia~vGlte~ea~ 394 (499)
T PLN02507 329 NIPSIWAIGDVTNRIN-----------LTPVALMEGTCFAKTVFGGQPTKPDYENVA---CAVFCIPPLSVVGLSEEEAV 394 (499)
T ss_pred CCCCEEEeeEcCCCCc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCC---eEEECCCccEEEeCCHHHHH
Confidence 9999999999987543 3478999999999999975432 33444 334554 5777887642
Q ss_pred ---CCceeEe--c---------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 934 ---HTQVDIV--G---------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 934 ---~~~~~~~--~---------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..+.... . ...+..|.|+++ ++++++|++++|.+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a 445 (499)
T PLN02507 395 EQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDA 445 (499)
T ss_pred hccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCH
Confidence 1111100 0 012356889888 478999999999763
No 40
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-34 Score=347.36 Aligned_cols=373 Identities=18% Similarity=0.279 Sum_probs=263.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-Cccchhcc------cCcc-------cccccC---
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-VKLSKQLD------IKAD-------SILLRT--- 102 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-~~~~~~~~------~~~~-------~~~~~~--- 102 (1466)
+++||+||||||||++||..|+++|+++.|++..+..... ... +..++.+. .... .+..++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999998886654321100 000 01111110 0000 000111
Q ss_pred --hhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCCCCCCCCCCCCC---cEEEecCHHHHHhhc
Q psy2951 103 --EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANNIA 176 (1466)
Q Consensus 103 --~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (1466)
.++.+..+++++.++.... +....++...++. ++.||+||||||++|..++ +++.+ .++ +..+...+.
T Consensus 82 ~~~~~~~~~gv~~~~g~~~~i--~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~-i~G~~~~~~v~---~~~~~~~~~ 155 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQAEFI--NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPP-IPGITTTPGVY---DSTGLLNLK 155 (441)
T ss_pred HHHHHhhcCCcEEEEEEEEEe--cCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC-CCCccCCCCEE---ChhHhhccc
Confidence 1222334899998876543 3445556666664 6999999999999997554 55532 233 223333222
Q ss_pred ccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q psy2951 177 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256 (1466)
Q Consensus 177 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~ 256 (1466)
..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++++++.+++++.++ +
T Consensus 156 ---~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~ 230 (441)
T PRK08010 156 ---ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-PREDRDIADNIATILRDQGVDIILNAHVERISHHE-N 230 (441)
T ss_pred ---ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C
Confidence 345799999999999999999999999999999987665 45688999999999999999999999999998653 2
Q ss_pred CeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCccee
Q psy2951 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 334 (1466)
Q Consensus 257 ~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~ 334 (1466)
.+ .+.++++ ++++|.|++|+|++||+++ ++..|++++++|+|.||+++||+.|||||+|||++.+.
T Consensus 231 ~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~---------- 298 (441)
T PRK08010 231 QV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ---------- 298 (441)
T ss_pred EE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------
Confidence 22 3444444 5899999999999999986 45778899888999999999999999999999997653
Q ss_pred ccHHHHHHHHHHHHHHhcCC-CC---CCCCCC---cccccccceeeEEEEeecC------Cc----eEEEe------ccc
Q psy2951 335 GHYQLAQYHGRIAALNMVEK-KT---SLSTIP---FFWTMLFGVGFRFAGYAAG------HT----QVDIV------GDL 391 (1466)
Q Consensus 335 ~~~~~A~~~g~~aa~~i~~~-~~---~~~~~p---~~~s~~~~~~~~~~G~~~~------~~----~~~~~------g~~ 391 (1466)
....|..+|+.++.|+++. .. .+..+| |+.+....+| .+.. .+ ...+. -..
T Consensus 299 -~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vG-----lte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 372 (441)
T PRK08010 299 -FTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVG-----MTEEQARESGADIQVVTLPVAAIPRARVMN 372 (441)
T ss_pred -chhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeee-----CCHHHHHHcCCCeEEEEEecCcChhhhhcC
Confidence 3446889999999999974 21 334555 3344444444 3221 00 00000 012
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. .++.|||++|.+
T Consensus 373 ~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 433 (441)
T PRK08010 373 DTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVK-MVMDAGLPYSILRDQIFTHPSMSESL 433 (441)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhccccCCchHHHH
Confidence 35678888886 589999999998 45666666 999998876 799999999987
No 41
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.6e-34 Score=349.22 Aligned_cols=343 Identities=20% Similarity=0.283 Sum_probs=254.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch----------------hcc--------cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK----------------QLD--------IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~----------------~~~--------~~ 646 (1466)
.+||+||||||||++||..|+++|++ |+++|++. +++.. +-.++ .++ .+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~--V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAK--ALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc--EEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 58999999999999999999999998 77888753 22110 00010 000 01
Q ss_pred cccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcC-CCCCCCCc
Q psy2951 647 ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI-SQADGVNK 714 (1466)
Q Consensus 647 ~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~-~~~~g~~~ 714 (1466)
...+ ...+...+++.||+++.++.+ .. + .+++.+ ++..+.||+||||||++|+.| ++| |.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~~-~--~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~-g~~~ 152 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-FT-K--DGTVEV-NGRDYTAPHILIATGGKPSFPENIP-GAEL 152 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec-c--CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCC-CCce
Confidence 1111 111334466679999999843 33 3 345555 466899999999999999999 888 7652
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEE
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 794 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 794 (1466)
. .+.++...+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++.+.+.+.|+++||+++
T Consensus 153 ~---~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 153 G---TDSDGFFALE---ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred e---EcHHHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cccCHHHHHHHHHHHHHcCCEEE
Confidence 2 2333433222 247999999999999999999999999999999998877 67899999999999999999999
Q ss_pred ccceEEEEEecCCCceEEEECCCC-cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 795 MKANVSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 795 ~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++.+++++...++ ...+.++++ +.+++|.|++++|++|++++ ++..+++++++|++.||+++||+.|+|||+|||
T Consensus 226 ~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~ 304 (450)
T TIGR01421 226 KLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304 (450)
T ss_pred cCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEec
Confidence 99999999843332 235666777 57999999999999999985 578899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCCC-------Ccee--
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAGH-------TQVD-- 938 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~-- 938 (1466)
+..+. .++.|.+||+.+|+||++... .+..+|.. .++.+.+..+|+++.. ....
T Consensus 305 ~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~--~f~~p~ia~vGlte~~a~~~~g~~~~~~~ 371 (450)
T TIGR01421 305 VGKVE-----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTV--VFSHPPIGTIGLTEKEAIEKYGKENIKVY 371 (450)
T ss_pred CCCcc-----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCeE--EeCCCceEEEeCCHHHHHhhcCCCCEEEE
Confidence 97554 347899999999999996432 24456532 2344567788876521 1111
Q ss_pred Eec---------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 939 IVG---------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 939 ~~~---------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
... .-.+..|+|+++ ++++++|+++++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 411 (450)
T TIGR01421 372 NSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDG 411 (450)
T ss_pred EEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 000 013456888888 47999999999965
No 42
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=5.2e-34 Score=344.39 Aligned_cols=373 Identities=21% Similarity=0.276 Sum_probs=265.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------ccc-------Cc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDI-------KA--- 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~-------~~--- 95 (1466)
++|++||||||||.+||.. +.|.+|.|+|.+.-...-..+ +..++. +.. +.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 3899999999999999876 469999887743211000000 111110 000 00
Q ss_pred --------cccccc-Chhh-hhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 96 --------DSILLR-TEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 96 --------~~~~~~-~~~~-~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
+++... .... ++..+++++.++..+. +.++|++.+++.+.||+||||||++|+.++ +++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~----~~~~V~v~~g~~~~~d~lViATGs~p~~p~-i~g~~~~~- 152 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI----GPKTLRTGDGEEITADQVVIAAGSRPVIPP-VIADSGVR- 152 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe----cCCEEEECCCCEEEeCEEEEcCCCCCCCCC-CCCcCCcc-
Confidence 111111 2233 6678999999987765 357888888888999999999999998654 44443322
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.+.++...+.. .+++++|||+|++|+|+|..++++|.+|+++++.+.++ +.+++++.+.+.+.+ +.||++++++
T Consensus 153 ~~~~~~~~~l~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~l~-~~~v~i~~~~ 227 (451)
T PRK07846 153 YHTSDTIMRLPE---LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELA-SKRWDVRLGR 227 (451)
T ss_pred EEchHHHhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHH-hcCeEEEeCC
Confidence 235555555442 35799999999999999999999999999999988766 567888888877655 5689999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
++++++.++ +. ..+.+.+++++++|.|++|+|++||++++ +..+++++++|+|.||+++||+.|+|||+|||+..+
T Consensus 228 ~v~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~ 305 (451)
T PRK07846 228 NVVGVSQDG-SG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY 305 (451)
T ss_pred EEEEEEEcC-CE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc
Confidence 999998653 22 33566778899999999999999999985 577899998999999999999999999999999754
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCcccccccceeeEEEEeecCC-----ceE-----EEe-
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DIV- 388 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~~- 388 (1466)
. ....|.+||++++.|+++.. ..+..+|+..-. ...+.++|.+... .++ .+.
T Consensus 306 ~-----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~--~p~ia~vGlte~~a~~~g~~~~~~~~~~~~ 372 (451)
T PRK07846 306 Q-----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFT--HPQIASVGLTENEARAAGLDITVKVQNYGD 372 (451)
T ss_pred c-----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEEC--CCCcEeEeCCHHHHHhcCCCEEEEEEecCc
Confidence 2 34579999999999998652 234566642111 1223334433210 001 100
Q ss_pred -c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----c-cccCcccchhh
Q psy2951 389 -G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----L-PHSHRCLGVVL 444 (1466)
Q Consensus 389 -g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~-~~~~p~~~e~~ 444 (1466)
+ ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. + .+.|||++|.+
T Consensus 373 ~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~hPt~~e~~ 442 (451)
T PRK07846 373 VAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLI-QAMSFGLDAREMARGQYWIHPALPEVV 442 (451)
T ss_pred chhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhCCCccCCcHHHHH
Confidence 1 1235689998886 489999999998 45666666 999999875 3 47999999987
No 43
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-34 Score=346.72 Aligned_cols=374 Identities=17% Similarity=0.241 Sum_probs=262.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-Cccchhc------ccCccc-----------cccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-VKLSKQL------DIKADS-----------ILLR 101 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-~~~~~~~------~~~~~~-----------~~~~ 101 (1466)
+++||+||||||||++||..|+++|++|.|++.++..... ... +..++.+ ..+..+ +...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998887754321000 000 0011111 001111 1122
Q ss_pred ChhhhhcCCeEEEeCceEEEeccccccEEEecC---CcEEecCEEEEccCCCCCCCCCCCCCC---cEEEecCHHHHHhh
Q psy2951 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANNI 175 (1466)
Q Consensus 102 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 175 (1466)
..+.+.+.+++++.++..+. +.+++.+.. ..++.||+||||||++|+.++ +++.. .++ +..+...+
T Consensus 82 ~~~~~~~~gV~~~~g~~~~~----~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~-i~G~~~~~~v~---~~~~~~~~ 153 (438)
T PRK07251 82 NYAMLAGSGVDLYDAEAHFV----SNKVIEVQAGDEKIELTAETIVINTGAVSNVLP-IPGLADSKHVY---DSTGIQSL 153 (438)
T ss_pred HHHHHHhCCCEEEEEEEEEc----cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC-CCCcCCCCcEE---chHHHhcc
Confidence 33456778999998886543 235666543 246899999999999998654 44432 233 23333333
Q ss_pred cccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q psy2951 176 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 255 (1466)
Q Consensus 176 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~ 255 (1466)
. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ ..++++.+.+.+.++++||++++++++++++.++
T Consensus 154 ~---~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~- 228 (438)
T PRK07251 154 E---TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-REEPSVAALAKQYMEEDGITFLLNAHTTEVKNDG- 228 (438)
T ss_pred h---hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-
Confidence 2 2467999999999999999999999999999999887764 4578888899999999999999999999998643
Q ss_pred CCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcce
Q psy2951 256 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333 (1466)
Q Consensus 256 ~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~ 333 (1466)
+.+ .+. .+++++++|.||+|+|++|+++.+ +..++.++++|++.||+++||+.|+|||+|||++.+.+
T Consensus 229 ~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~-------- 298 (438)
T PRK07251 229 DQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQF-------- 298 (438)
T ss_pred CEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCccc--------
Confidence 222 233 356789999999999999998864 45677888889999999999999999999999875432
Q ss_pred eccHHHHHHHHHHHHHHhcCCCC----CCCCCCcccccccceeeEEEEeecCC-----ce-----EEEe--c----ccCC
Q psy2951 334 IGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQ-----VDIV--G----DLEA 393 (1466)
Q Consensus 334 ~~~~~~A~~~g~~aa~~i~~~~~----~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~-----~~~~--g----~~~~ 393 (1466)
...|..+|+.++.++++... .+..+|+. -..+..+..+|..... .+ ..+. + ..+.
T Consensus 299 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
T PRK07251 299 ---TYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDL 373 (438)
T ss_pred ---HhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCC
Confidence 34688899999999986532 23345532 1112223333332210 00 0110 0 1134
Q ss_pred CeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 394 LKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 394 ~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+
T Consensus 374 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 432 (438)
T PRK07251 374 RGAFKVVVNTETKEILGATLFGEGSQEIINLIT-MAMDNKIPYTYFKKQIFTHPTMAENL 432 (438)
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcccccCCChHHHH
Confidence 678888886 489999999998 55666766 999998875 799999999987
No 44
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=7.4e-34 Score=347.02 Aligned_cols=380 Identities=25% Similarity=0.344 Sum_probs=268.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc-----CCC----CCCCCCCccchh-----------------cccCc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT-----DEN----FLPYDRVKLSKQ-----------------LDIKA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~-----~~~----~~~~~~~~~~~~-----------------~~~~~ 95 (1466)
..+|++||||||||++||.++++.|.++.|++.. ... ...+.-. .++. ++...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~-P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCI-PSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccccccc-HHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 3689999999999999999999999998887751 010 0000000 0100 00110
Q ss_pred c-------ccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecC--CcEEecCEEEEccCCCCCCCC
Q psy2951 96 D-------SIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD--GTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 96 ~-------~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~--~~~~~~d~lviAtG~~~~~~~ 155 (1466)
. ++. .....+++..+++++.++..+.......+++.+.. +.+++||+||||||++|+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p 161 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLP 161 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCC
Confidence 0 001 12233455679999999876654444467777643 457999999999999997665
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
.++.... ..+ +.++...+. ..+++++|||+|++|+|+|..++++|.+|+++++.+.++ +.+++++.+.+.+.|+
T Consensus 162 ~~~~~~~-~~~-~~~~~~~~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~ 235 (475)
T PRK06327 162 GVPFDNK-IIL-DNTGALNFT---EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-AAADEQVAKEAAKAFT 235 (475)
T ss_pred CCCCCCc-eEE-CcHHHhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-CcCCHHHHHHHHHHHH
Confidence 5442221 122 333333332 235899999999999999999999999999999988665 3578899999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCeEEEEcCC--C--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcC
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETN 309 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~ 309 (1466)
++||+++++++|++++.+++ .+ .+.+.+ | +++++|.|++|+|++|++++ ++..+++++++|+|.||++++|+
T Consensus 236 ~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts 313 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTN 313 (475)
T ss_pred HcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccC
Confidence 99999999999999986542 23 233332 3 47999999999999999984 46678899999999999999999
Q ss_pred CCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCcccccccceeeEEEEeecCC-----
Q psy2951 310 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH----- 382 (1466)
Q Consensus 310 ~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~~~s~~~~~~~~~~G~~~~~----- 382 (1466)
.|+|||+|||+..+ ..+..|..||+.+|.|+++... .+..+|+.. ..+..+..+|.....
T Consensus 314 ~~~VyA~GD~~~~~-----------~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~~g 380 (475)
T PRK06327 314 VPNVYAIGDVVRGP-----------MLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKAEG 380 (475)
T ss_pred CCCEEEEEeccCCc-----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHHcC
Confidence 99999999998643 2456899999999999997653 344555321 111223333432210
Q ss_pred c-----eEEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccch
Q psy2951 383 T-----QVDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGV 442 (1466)
Q Consensus 383 ~-----~~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e 442 (1466)
. ...+.. ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e 459 (475)
T PRK06327 381 VEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAV-VAMEFKASSEDIARICHAHPTLSE 459 (475)
T ss_pred CCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCCcCCCChHH
Confidence 0 011110 1235789999886 489999999998 44566666 999999876 7999999999
Q ss_pred hh
Q psy2951 443 VL 444 (1466)
Q Consensus 443 ~~ 444 (1466)
.+
T Consensus 460 ~~ 461 (475)
T PRK06327 460 VW 461 (475)
T ss_pred HH
Confidence 88
No 45
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=3.7e-34 Score=349.00 Aligned_cols=342 Identities=22% Similarity=0.321 Sum_probs=256.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch-----------------hcc-------cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK-----------------QLD-------IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~-----------------~~~-------~~ 646 (1466)
.+||+||||||||++||..|+++|++ |+++|+.. +++.. +..++ .++ .+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~--V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAK--VALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 58999999999999999999999998 77787752 22110 00000 000 01
Q ss_pred cccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcE
Q psy2951 647 ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 715 (1466)
Q Consensus 647 ~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~ 715 (1466)
...+ .....+.+++.||+++.++ +..+ +. +++.+ ++.++.||+||||||++|+.|+++ |.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v-~~--~~v~~-~g~~~~~d~lViATGs~p~~p~i~-g~~~~ 154 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFV-DA--HTVEV-NGERYTADHILIATGGRPSIPDIP-GAEYG 154 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cC--CEEEE-CCEEEEeCEEEEecCCCCCCCCCC-Cccee
Confidence 1111 1112334566799999998 6666 43 46666 677899999999999999999998 87643
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEc
Q psy2951 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795 (1466)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 795 (1466)
+ +..+...+ ...+++|+|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++...+.+.|+++||++++
T Consensus 155 ~---~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~L~~~GV~i~~ 227 (450)
T PRK06116 155 I---TSDGFFAL---EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-RGFDPDIRETLVEEMEKKGIRLHT 227 (450)
T ss_pred E---chhHhhCc---cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-cccCHHHHHHHHHHHHHCCcEEEC
Confidence 3 22333222 2247999999999999999999999999999999988766 568899999999999999999999
Q ss_pred cceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccc
Q psy2951 796 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 873 (1466)
Q Consensus 796 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~ 873 (1466)
++++.+++..+++. ..+.+.+|+++++|.||+|+|++|+++. ++..+++++++|+|.||+++||++|+|||+|||+.
T Consensus 228 ~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (450)
T PRK06116 228 NAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTG 306 (450)
T ss_pred CCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCC
Confidence 99999998543332 3467778889999999999999999885 57789999999999999999999999999999986
Q ss_pred cCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCc-eeEEeeccCC------CC--ceeEe
Q psy2951 874 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGV-GFRFAGYAAG------HT--QVDIV 940 (1466)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~-~~~~~g~~~~------~~--~~~~~ 940 (1466)
.+. .+..|+.||+.||+||++... .+..+|. .+|.. .+..+|+++. .+ .....
T Consensus 307 ~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~~a~vGlte~~a~~~~~~~~~~~~~ 372 (450)
T PRK06116 307 RVE-----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPPIGTVGLTEEEAREQYGEDNVKVYR 372 (450)
T ss_pred CcC-----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCccEEeeCCHHHHHHhCCCCcEEEEE
Confidence 433 347899999999999998543 2345553 34554 6778887652 11 11111
Q ss_pred c----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 G----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 ~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-++..|.|+++ ++++++|+++++.+
T Consensus 373 ~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 411 (450)
T PRK06116 373 SSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFG 411 (450)
T ss_pred EecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 0 013467899988 46899999999966
No 46
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=4.3e-34 Score=346.60 Aligned_cols=343 Identities=21% Similarity=0.303 Sum_probs=256.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC----ccchh----------------cc-------cCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQ----------------LD-------IKA 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~----~~~~~----------------~~-------~~~ 647 (1466)
.+||+||||||||++||..++++|++ |+++|+. .+++.-. ..++. ++ .+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~--V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK--VAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc--EEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 58999999999999999999999998 7777774 2222110 00110 00 000
Q ss_pred -----------ccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 648 -----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 648 -----------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
..+...+...+++.|++++.++ +..+ +.....+. .++.++.||+||||||++|..|++| |.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~v-~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~-G~~~~~ 154 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGR-ARLV-GPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLP-GHELGI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEE-EEEe-cCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCC-Ccccee
Confidence 1122233445667899999986 7777 66544443 3567899999999999999999998 865322
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+++..+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||+++++
T Consensus 155 ---~~~~~~~l~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (446)
T TIGR01424 155 ---TSNEAFHLP---TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-RGFDDDMRALLARNMEGRGIRIHPQ 227 (446)
T ss_pred ---chHHhhccc---ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-cccCHHHHHHHHHHHHHCCCEEEeC
Confidence 334443332 248999999999999999999999999999999998766 4588999999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEecccccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~ 874 (1466)
+++++++..+++ ..+.+.+++++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||+..
T Consensus 228 ~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~ 305 (446)
T TIGR01424 228 TSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDR 305 (446)
T ss_pred CEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCC
Confidence 999999843332 3466678889999999999999999885 578899999999999999999999999999999865
Q ss_pred CCcccCCceeeeccHHHHHHHHHHHHHHhccCC-CcC--cccCeeeeeecCc-eeEEeeccCC-------CCceeE-e--
Q psy2951 875 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSL--STIPFFWTMLFGV-GFRFAGYAAG-------HTQVDI-V-- 940 (1466)
Q Consensus 875 ~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-~~~--~~~~~~~~~~~~~-~~~~~g~~~~-------~~~~~~-~-- 940 (1466)
+. .++.|.+||+++|+||++.. .++ ..+|. .+|.. .+..+|+++. .+-... .
T Consensus 306 ~~-----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~ 371 (446)
T TIGR01424 306 IN-----------LTPVAIMEATCFANTEFGNNPTKFDHDLIAT---AVFSQPPLGTVGLTEEEAREKFTGDILVYRAGF 371 (446)
T ss_pred cc-----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCe---EEeCCchhEEEECCHHHHHhhcCCCEEEEEEec
Confidence 43 34789999999999999743 222 34553 34543 5777887642 110001 0
Q ss_pred -c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 -G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 -~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-.+..|.|+++ ++++++|+++++.+
T Consensus 372 ~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 407 (446)
T TIGR01424 372 RPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPD 407 (446)
T ss_pred CchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCC
Confidence 0 012457899988 47999999999976
No 47
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=352.05 Aligned_cols=307 Identities=22% Similarity=0.309 Sum_probs=249.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
..+++|||||||+||+.+|..|+..+. +|||||+++++.|. |.+..... .+.+.+..+....+...+++++.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~--~ItlI~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~- 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKY--NITVISPRNHMLFT-PLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAV- 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCC--eEEEEcCCCCcchh-hhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEE-
Confidence 346789999999999999999976555 99999999988874 44444332 2233333333455666788988775
Q ss_pred EEEeecCCCCeEEe----------cCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC-------
Q psy2951 1142 IISDSELNEKKIKL----------QDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT------- 1203 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~----------~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~------- 1203 (1466)
|+.| |++++.|.+ +++.+++||+||||||++++.+++| |.+ +++.+++++++.++++.+.
T Consensus 84 V~~I-d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip-G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 84 VYDV-DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP-GVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEE-EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC-CHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999 999999988 4677899999999999999999999 876 6778889999888765431
Q ss_pred ----------CCCeEEEEcCCHHHHHHHHHHhc--------------CCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh
Q psy2951 1204 ----------PESNVVVIGSSFIGMEAAAFCAS--------------KVKSVTVVGRGAVPFQESLGKEVGERITKLFES 1259 (1466)
Q Consensus 1204 ----------~~~~vvVvG~g~~g~e~a~~l~~--------------~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~ 1259 (1466)
..++++|||+|++|+|+|..|+. .+.+|+++++.+++++ .+++++.+.+.+.+++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~~~L~~ 240 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQRRLRR 240 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHHHHHHH
Confidence 12489999999999999998875 3789999999988886 6889999999999999
Q ss_pred CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCcc-ccCCCEEE
Q psy2951 1260 KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNVPGVYA 1338 (1466)
Q Consensus 1260 ~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-t~~~~v~a 1338 (1466)
+||+++++++|+++. .+ .|.++||+++++|.+|+++|..|+ ++++.++++++++|+|.||+++| +++|+|||
T Consensus 241 ~gV~v~~~~~v~~v~-~~-----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfA 313 (424)
T PTZ00318 241 LGVDIRTKTAVKEVL-DK-----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFA 313 (424)
T ss_pred CCCEEEeCCeEEEEe-CC-----EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEE
Confidence 999999999999997 32 377899999999999999999998 68888899888889999999999 57999999
Q ss_pred ecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC-CCCccceec
Q psy2951 1339 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL-STIPFFWTM 1390 (1466)
Q Consensus 1339 ~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~-~~~p~~w~~ 1390 (1466)
+|||+..+... ....+..|..||+.+|+||.+....- ...||.|+.
T Consensus 314 iGD~a~~~~~~------~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~~~ 360 (424)
T PTZ00318 314 LGDCAANEERP------LPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVYRS 360 (424)
T ss_pred EeccccCCCCC------CCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCeecC
Confidence 99999875321 12356889999999999998643221 456777754
No 48
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.1e-34 Score=347.33 Aligned_cols=382 Identities=21% Similarity=0.291 Sum_probs=263.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------ccc-------Cccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDI-------KADS 97 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~-------~~~~ 97 (1466)
..+||+||||||||++||..|+++|++|.|++...-....... +..++. +.. +...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 4699999999999999999999999999998753211000000 000110 000 0000
Q ss_pred -----------ccccChhhhhcCCeEEEeCceEEEecc-----ccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCC
Q psy2951 98 -----------ILLRTEEFYKDNDIHVIKGKKIISDSE-----LNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADG 159 (1466)
Q Consensus 98 -----------~~~~~~~~~~~~~v~~~~~~~v~~~~~-----~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~ 159 (1466)
+......++++.+++++.++....+.. ....++.+.++ .++.||+||||||++|+.+|..+.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 162 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPF 162 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCCC
Confidence 111223455677999999987654321 11455666666 479999999999999976654432
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCc
Q psy2951 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 239 (1466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV 239 (1466)
...+.+ +..+...+.. .+++++|||||++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||
T Consensus 163 -~~~~~~-~~~~~~~~~~---~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-~~~~~~~~~~l~~~l~~~gI 236 (472)
T PRK05976 163 -DGEYVI-SSDEALSLET---LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-PTEDAELSKEVARLLKKLGV 236 (472)
T ss_pred -CCceEE-cchHhhCccc---cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-CcCCHHHHHHHHHHHHhcCC
Confidence 222222 3344444322 35799999999999999999999999999999988765 45788999999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcCCC--cEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEE
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 315 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya 315 (1466)
++++++++++++..+++.+..+.+.+| +++++|.||+|+|++|+++.+ +..++.. .+|++.||++++|+.|+|||
T Consensus 237 ~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~ts~~~IyA 315 (472)
T PRK05976 237 RVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKERHIYA 315 (472)
T ss_pred EEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCcccCCCCEEE
Confidence 999999999997521233444444555 469999999999999999754 4555554 46899999999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC-CC--CCCCCcccccccceeeEEEEeecC------Cc---
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TS--LSTIPFFWTMLFGVGFRFAGYAAG------HT--- 383 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~-~~--~~~~p~~~s~~~~~~~~~~G~~~~------~~--- 383 (1466)
+|||+..+ ..+..|..||+.++.|+.+.. .. +..+|. ....+..+..+|.... .+
T Consensus 316 iGD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~g~~~~~ 382 (472)
T PRK05976 316 IGDVIGEP-----------QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEEAKEAGYDVKV 382 (472)
T ss_pred eeecCCCc-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHHHHHcCCCEEE
Confidence 99998643 346689999999999998764 22 233442 1111222333333221 00
Q ss_pred -eEEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 -QVDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 -~~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+.. ..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 458 (472)
T PRK05976 383 GKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFA-LALELGARLWEVAGTIHPHPTLSEAI 458 (472)
T ss_pred EEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcccCCChHHHH
Confidence 001100 1235789888886 489999999998 44566666 899988876 799999999988
No 49
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.5e-33 Score=345.03 Aligned_cols=375 Identities=19% Similarity=0.271 Sum_probs=266.8
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh---------------c-------ccCc-----
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ---------------L-------DIKA----- 95 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~---------------~-------~~~~----- 95 (1466)
+||+||||||||++||..|+++|+++.|++.+.-...-..+ +..++. + ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 69999999999999999999999998887743211100000 000000 0 0000
Q ss_pred --ccccc-----cChhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCCCCCCCCCCCCCcEEEec
Q psy2951 96 --DSILL-----RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVFYLR 167 (1466)
Q Consensus 96 --~~~~~-----~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~ 167 (1466)
+++.. .+..++++.+++++.++..+. +.+++.+.++. .+.||+||||||++|+.++ +++.+....+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~----~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~-i~G~~~~~~~- 154 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRARFK----DPKTVKVDLGREVRGAKRFLIATGARPAIPP-IPGLKEAGYL- 154 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEc----cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC-CCCcccCceE-
Confidence 11111 133556778999999887653 24677776653 6899999999999997553 5554332222
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++...+.+.+++.||+++++++|
T Consensus 155 ~~~~~~~~~---~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~gV~i~~~~~V 230 (463)
T TIGR02053 155 TSEEALALD---RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-REEPEISAAVEEALAEEGIEVVTSAQV 230 (463)
T ss_pred CchhhhCcc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-ccCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 333433332 2347999999999999999999999999999999887664 578899999999999999999999999
Q ss_pred EEEEecCCCCeEEEEcC---CCcEEeccEEEEeeccccCcc-c-cccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 248 SSFEKNEKNDVTAANLD---NGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 248 ~~i~~~~~~~~~~v~~~---~g~~i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
++++.+++ ...+.+. +++++++|.||+|+|++|+++ + ++..+++++++|+|.||+++||+.|+|||+|||+..
T Consensus 231 ~~i~~~~~--~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~ 308 (463)
T TIGR02053 231 KAVSVRGG--GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGG 308 (463)
T ss_pred EEEEEcCC--EEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCC
Confidence 99986532 2223322 346899999999999999998 4 677889999899999999999999999999999875
Q ss_pred cCccCCCCcceeccHHHHHHHHHHHHHHhcCC-CCC--CCCCCcccccccceeeEEEEeecCC-----ceE-----EEec
Q psy2951 323 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DIVG 389 (1466)
Q Consensus 323 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~~g 389 (1466)
+ ..+..|..||+.+|.|+++. ... +..+|+ .-.....+..+|.+... .++ .+..
T Consensus 309 ~-----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~ 375 (463)
T TIGR02053 309 L-----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTN 375 (463)
T ss_pred c-----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCCHHHHHhcCCCeEEEEEeccc
Confidence 3 24568999999999999975 332 234442 22222334445543210 011 1110
Q ss_pred ------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 390 ------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 390 ------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~pt~~e~~ 444 (463)
T TIGR02053 376 VPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAA-LAIRAGMTVDDLIDTLHPFPTMAEGL 444 (463)
T ss_pred chHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcccCCChHHHH
Confidence 1135789988886 489999999998 45666666 899988875 688999999988
No 50
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-33 Score=344.99 Aligned_cols=376 Identities=20% Similarity=0.268 Sum_probs=263.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC---CCCCCCCccchh----------------ccc-------Cc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---FLPYDRVKLSKQ----------------LDI-------KA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~---~~~~~~~~~~~~----------------~~~-------~~ 95 (1466)
.++|++||||||||+++|..|++.|.++.+++..+.- +... .+..++. ... +.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~-GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV-GCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc-cccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 3689999999999999999999999998887654210 0000 0000000 000 00
Q ss_pred ccc-------cc-----cChhhhhcC-CeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCC
Q psy2951 96 DSI-------LL-----RTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 96 ~~~-------~~-----~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
..+ .. .+...++.. +++++.|...+.+ .....+.+.++. ++.||+||||||++|+.++ +++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~-i~G~ 170 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRLHDGGERVLAADRCLIATGSTPTIPP-IPGL 170 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC-CCCc
Confidence 000 00 122334433 8999998876653 334555555653 6999999999999998654 5554
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
.....+.. .+.... . ..+++++|||+|++|+|+|..+++.|.+|+++++. ..+ +.+++++.+.+.+.|++.||+
T Consensus 171 ~~~~~~~~-~~~l~~--~-~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~l~~~L~~~GV~ 244 (479)
T PRK14727 171 MDTPYWTS-TEALFS--D-ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-FREDPLLGETLTACFEKEGIE 244 (479)
T ss_pred Cccceecc-hHHhcc--c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-CcchHHHHHHHHHHHHhCCCE
Confidence 32222222 222221 1 23579999999999999999999999999999885 333 457889999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
+++++++++++.+++ . ..+.++++ ++++|.||+|+|+.||+.+ ++..|++++++|+|.||+++||+.|+|||+||
T Consensus 245 i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD 321 (479)
T PRK14727 245 VLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGD 321 (479)
T ss_pred EEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeee
Confidence 999999999976432 2 23444444 6999999999999999986 46678999988999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC------c----eEE
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH------T----QVD 386 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~------~----~~~ 386 (1466)
|+..+. ....|..||+.+|.||++.... +..+|+. -.....+..+|.+... + ...
T Consensus 322 ~~~~~~-----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a~~~g~~~~~~~~~ 388 (479)
T PRK14727 322 CSDLPQ-----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQVATVGLSEAKAHLSGIETISRVLT 388 (479)
T ss_pred cCCcch-----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCceeeeeCCHHHHHHcCCceEEEEEE
Confidence 997553 3457999999999999976443 3444521 1222234444443211 0 001
Q ss_pred E------ecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 I------VGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ~------~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+ ...-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 389 ~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~E~~ 460 (479)
T PRK14727 389 MENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAA-LAIHNRMTVEELADQLFPYLTMVEGL 460 (479)
T ss_pred cccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcCCccCCChHHHH
Confidence 1 011125689988886 489999999998 45666666 899998876 799999999988
No 51
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.7e-34 Score=345.00 Aligned_cols=348 Identities=22% Similarity=0.273 Sum_probs=253.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccchh----------------cc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ----------------LD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~~----------------~~-------~~ 646 (1466)
.++||+||||||||++||..|+++|.+ |+++|+.+.+++.- +..++. ++ .+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~--V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLE--TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 468999999999999999999999988 78888754332211 000000 00 11
Q ss_pred cccccccC-----------HhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADSILLRT-----------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~~~~~~-----------~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
...+..+. ...+++.||+++.++ +..+ +.....+...++ .++.||+||||||++|+.++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~ 158 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT-GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDD 158 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCC
Confidence 11121111 133556799999998 6665 555445555455 47999999999999998544331432
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
.++ +..++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++...+.+.|+++ |+
T Consensus 159 ~~v~---~~~~~~~~~---~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-~~~d~~~~~~~~~~l~~~-v~ 230 (471)
T PRK06467 159 PRIW---DSTDALELK---EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-PAADKDIVKVFTKRIKKQ-FN 230 (471)
T ss_pred CcEE---ChHHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-CcCCHHHHHHHHHHHhhc-eE
Confidence 232 344444433 347999999999999999999999999999999998877 468999999999999998 99
Q ss_pred EEccceEEEEEecCCCceEEEECCC--C--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeE
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 866 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iy 866 (1466)
+++++++++++..++ .+ .+.+.+ + +++++|.||+++|++|++++ ++..|++++++|+|.||+++||+.|+||
T Consensus 231 i~~~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~Vy 308 (471)
T PRK06467 231 IMLETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIF 308 (471)
T ss_pred EEcCCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEE
Confidence 999999999984333 22 344333 2 46999999999999999985 4678899999999999999999999999
Q ss_pred EeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CC--c
Q psy2951 867 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HT--Q 936 (1466)
Q Consensus 867 a~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~--~ 936 (1466)
|+|||+..+. .++.|.+||+.||.+|++....+ ..+|. ..++.+.+..+|+++. .+ .
T Consensus 309 AiGDv~~~~~-----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~--~~~~~p~ia~vGlte~ea~~~g~~~~~ 375 (471)
T PRK06467 309 AIGDIVGQPM-----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPS--IAYTEPEVAWVGLTEKEAKEEGIEYET 375 (471)
T ss_pred EehhhcCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCe--EEECCCceeEEECCHHHHHhcCCCeEE
Confidence 9999986543 34789999999999999865544 34553 3366777888888652 11 0
Q ss_pred eeEec--------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 937 VDIVG--------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 937 ~~~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..... .-+...|+|+++ ++++++|++++|.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a 417 (471)
T PRK06467 376 ATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNA 417 (471)
T ss_pred EEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 01110 112466899888 468999999999874
No 52
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=8.7e-34 Score=346.60 Aligned_cols=347 Identities=20% Similarity=0.345 Sum_probs=253.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch----------------hc--------cc
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK----------------QL--------DI 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~----------------~~--------~~ 645 (1466)
.++||+||||||||++||..|+++|++ |+++|+... ++.. +-.++ .+ ..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~--v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMK--VALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCe--EEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 358999999999999999999999998 777777531 1110 00000 00 11
Q ss_pred Cccccc-----------ccCHhHhhhC-CcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 646 KADSIL-----------LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 646 ~~~~~~-----------~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
+...+. .....++++. ||+++.++.+ .+ +.+++.+ ++.++.||+||||||++|+.|++| |.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~~---~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~-G~~ 154 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-FE---SPNTVRV-GGETLRAKRIFINTGARAAIPPIP-GLD 154 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-Ec---cCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCC-CCC
Confidence 111111 1233455666 9999999843 33 3455655 456899999999999999999999 876
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
....+ +..+.... ...+++|+|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++
T Consensus 155 ~~~~~-~~~~~~~~---~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i 229 (463)
T PRK06370 155 EVGYL-TNETIFSL---DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-PREDEDVAAAVREILEREGIDV 229 (463)
T ss_pred cCceE-cchHhhCc---cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-cccCHHHHHHHHHHHHhCCCEE
Confidence 32222 22333222 2347999999999999999999999999999999998776 4578889999999999999999
Q ss_pred EccceEEEEEecCCCceEEEEC-CCCcEEecCEEEEccccccCcc-c-cccCCceeeCCCcEEeCCCCCCCCCCeEEecc
Q psy2951 794 VMKANVSSFEKNEKNDVTAANL-DNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD 870 (1466)
++++++.+++..+++....+.. .++.++++|.||+|+|++|+++ + ++..|++++++|+|.||+++||+.|+|||+||
T Consensus 230 ~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD 309 (463)
T PRK06370 230 RLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGD 309 (463)
T ss_pred EeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeee
Confidence 9999999998543322222332 3345899999999999999988 4 67889999999999999999999999999999
Q ss_pred ccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCcC--cccCeeeeeecCceeEEeeccCC------CC--ceeE
Q psy2951 871 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSL--STIPFFWTMLFGVGFRFAGYAAG------HT--QVDI 939 (1466)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~ 939 (1466)
|+..+.. .+.|..||++||+||++. ...+ ..+|+ ..+++..+.++|+++. ++ ....
T Consensus 310 ~~~~~~~-----------~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~ia~vG~te~~a~~~g~~~~~~~~ 376 (463)
T PRK06370 310 CNGRGAF-----------THTAYNDARIVAANLLDGGRRKVSDRIVPY--ATYTDPPLARVGMTEAEARKSGRRVLVGTR 376 (463)
T ss_pred cCCCccc-----------HHHHHHHHHHHHHHHhCCCCCCcccccCCe--EEEcCCCcEeeeCCHHHHHHcCCCeEEEEE
Confidence 9876543 368999999999999975 3332 34443 3356667888887652 11 0111
Q ss_pred ec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 940 VG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 940 ~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.. .-+...|+|+++ ++++++|++++|.+
T Consensus 377 ~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 414 (463)
T PRK06370 377 PMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVH 414 (463)
T ss_pred ecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCC
Confidence 00 112467899988 47999999999987
No 53
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.9e-33 Score=351.71 Aligned_cols=377 Identities=22% Similarity=0.304 Sum_probs=264.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh---------------c--cc-------Ccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ---------------L--DI-------KAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~---------------~--~~-------~~~ 96 (1466)
..+||+||||||||++||..|++.|.++.|++.+.-...-..+ +..++. + .. ...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 3699999999999999999999999999887754210000000 000000 0 00 011
Q ss_pred cccc------------cChhhhhcC-CeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCCC
Q psy2951 97 SILL------------RTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVN 161 (1466)
Q Consensus 97 ~~~~------------~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~~ 161 (1466)
.+.. .+...+++. +++++.+...+. +.....+.+.++. ++.||+||||||++|..++ +++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~-i~g~~ 253 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK--DDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP-IPGLK 253 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC-CCCCC
Confidence 1111 122334444 799999876654 3444555555553 6999999999999997554 55554
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
...++.+ .+..... ..+++++|||+|++|+|+|..|+++|.+|+++++.. .+ +.+++++.+.+.+.|++.||++
T Consensus 254 ~~~~~~~-~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-~~~d~~~~~~l~~~l~~~gI~i 327 (561)
T PRK13748 254 ETPYWTS-TEALVSD---TIPERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-FREDPAIGEAVTAAFRAEGIEV 327 (561)
T ss_pred ccceEcc-HHHhhcc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-cccCHHHHHHHHHHHHHCCCEE
Confidence 3223322 2222211 235799999999999999999999999999999854 33 3478999999999999999999
Q ss_pred EcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
++++.+++++.++ +. ..+.++++ ++++|.|++|+|++||+.+ ++..|++++++|+|.||+++||+.|||||+|||
T Consensus 328 ~~~~~v~~i~~~~-~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~ 404 (561)
T PRK13748 328 LEHTQASQVAHVD-GE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDC 404 (561)
T ss_pred EcCCEEEEEEecC-CE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeec
Confidence 9999999997643 22 23444444 6999999999999999986 467899999899999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecC------Cc----eEEE
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG------HT----QVDI 387 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~------~~----~~~~ 387 (1466)
+..+. ....|..||+.++.||++.... +..+|+ ....+..+..+|.... .+ .+.+
T Consensus 405 ~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~ 471 (561)
T PRK13748 405 TDQPQ-----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEAHHDGIETDSRTLTL 471 (561)
T ss_pred CCCcc-----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHHHHcCCCeEEEEEec
Confidence 87653 3457899999999999976533 334442 1122233444454331 11 0111
Q ss_pred e------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 388 V------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 388 ~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. ...+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 472 ~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~Pt~~e~~ 542 (561)
T PRK13748 472 DNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAA-LAIRNRMTVQELADQLFPYLTMVEGL 542 (561)
T ss_pred ccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcccccCCchHHHH
Confidence 1 01135789998886 589999999998 45666666 899988876 799999999988
No 54
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.4e-33 Score=345.90 Aligned_cols=346 Identities=21% Similarity=0.288 Sum_probs=257.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cchhc-----------------------ccC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQL-----------------------DIK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~~~-----------------------~~~ 646 (1466)
..+||+||||||||++||..|+++|++ |+++|+.+.+++.... .++.+ ..+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~--v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKR--VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCE--EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 358999999999999999999999987 7888875433322111 11100 001
Q ss_pred ccccc-----------ccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
..++. ....+++++.+++++.++ +..+ +....++...++. ++.||+||||||++|+.|+++ +.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~-~~~ 158 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV-DPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDV-DFD 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe-cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC-CCC
Confidence 11111 112334567799999998 6666 6666666666664 799999999999999999877 554
Q ss_pred --cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 714 --KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 714 --~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.++ +.++...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.++++||
T Consensus 159 ~~~v~---~~~~~~~~---~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gI 231 (461)
T PRK05249 159 HPRIY---DSDSILSL---DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-SFLDDEISDALSYHLRDSGV 231 (461)
T ss_pred CCeEE---cHHHhhch---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-CcCCHHHHHHHHHHHHHcCC
Confidence 233 33333333 2348999999999999999999999999999999998876 46899999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++++++++++++..++ . ..+.+.+|+++++|.|++|+|++|++++ ++..+++++++|++.||+++||+.|+|||+|
T Consensus 232 ~v~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiG 309 (461)
T PRK05249 232 TIRHNEEVEKVEGGDD-G-VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVG 309 (461)
T ss_pred EEEECCEEEEEEEeCC-e-EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEee
Confidence 9999999999984332 2 3456677889999999999999999885 5778999999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc--CcccCeeeeeecC-ceeEEeeccCC------CCceeEe
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFG-VGFRFAGYAAG------HTQVDIV 940 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~~------~~~~~~~ 940 (1466)
||+..+. .+..|..||+.||.+|++.... ++.+|.. .|. ..+..+|+++. .+-....
T Consensus 310 D~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~ia~vG~te~~a~~~g~~~~~~~ 375 (461)
T PRK05249 310 DVIGFPS-----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPEISSVGKTEQELTAAKVPYEVGR 375 (461)
T ss_pred ecCCCcc-----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCCcceEecCCHHHHHHcCCCeEEEE
Confidence 9986544 3468999999999999976432 3455533 233 34667776642 1100000
Q ss_pred ----c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 ----G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 ----~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-++..|.|+++ ++++++|++++|..
T Consensus 376 ~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 414 (461)
T PRK05249 376 ARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGER 414 (461)
T ss_pred EccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCC
Confidence 0 113456899988 46899999999975
No 55
>PLN02546 glutathione reductase
Probab=100.00 E-value=7.5e-34 Score=345.73 Aligned_cols=344 Identities=18% Similarity=0.262 Sum_probs=255.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC---------CCCCCCCCc-----cchh----------------
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDRVK-----LSKQ---------------- 642 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~---------~~~~~~~~~-----~~~~---------------- 642 (1466)
...+||+||||||||+.||..++++|.+ |.++|+. ..+++ .|. .++.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~--V~liE~~~~~~~~~~~~~~GG-tC~n~GCiPsK~l~~aa~~~~~~~~~~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGAS--AAVCELPFATISSDTLGGVGG-TCVLRGCVPKKLLVYASKYSHEFEESRG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccccccccccCCCccC-cccCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 3468999999999999999999999998 6777741 11110 000 0000
Q ss_pred cc--------cC-----------cccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 643 LD--------IK-----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 643 ~~--------~~-----------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
++ .+ ...+...+...+++.||+++.++ ++.+ +.. ++.+ +|+++.||+||||||++|
T Consensus 154 ~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~v-d~~--~V~v-~G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 154 FGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIV-DPH--TVDV-DGKLYTARNILIAVGGRP 228 (558)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEc-cCC--EEEE-CCEEEECCEEEEeCCCCC
Confidence 00 01 11112233345667899999988 6666 553 4554 577899999999999999
Q ss_pred CcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH
Q psy2951 704 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 783 (1466)
Q Consensus 704 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~ 783 (1466)
..|++| |.+.++ +.+++..+ ...+++|+|||+|++|+|+|..|++.+.+|+++++.+.++ +.+++++...+.
T Consensus 229 ~~P~Ip-G~~~v~---~~~~~l~~---~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~~~d~~~~~~l~ 300 (558)
T PLN02546 229 FIPDIP-GIEHAI---DSDAALDL---PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVA 300 (558)
T ss_pred CCCCCC-Chhhcc---CHHHHHhc---cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-cccCHHHHHHHH
Confidence 999999 876332 44444333 2358999999999999999999999999999999998776 578999999999
Q ss_pred HHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCC
Q psy2951 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETN 861 (1466)
Q Consensus 784 ~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~ 861 (1466)
+.|+++||+++++.++.+++..+++.+ .+.+++++.+.+|.|++++|++|++++ +++.|++++++|+|.||+++||+
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts 379 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS 379 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence 999999999999999999975434333 455556555569999999999999985 57889999989999999999999
Q ss_pred CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCc-eeEEeeccCCCC--
Q psy2951 862 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGV-GFRFAGYAAGHT-- 935 (1466)
Q Consensus 862 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~-~~~~~g~~~~~~-- 935 (1466)
+|+|||+|||+..+. .++.|..||+++|.||++... .+..+|. .+|.. .+..+|+++...
T Consensus 380 ~p~IYAaGDv~~~~~-----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Peia~VGlte~eA~~ 445 (558)
T PLN02546 380 VPSIWAVGDVTDRIN-----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPPIGQVGLTEEQAIE 445 (558)
T ss_pred CCCEEEeeccCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCchHhhccCCHHHHHH
Confidence 999999999987543 347899999999999998543 2455663 35654 567777765211
Q ss_pred ---ce-eEec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 ---QV-DIVG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 ---~~-~~~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
+. .... ...+..|+|+++ ++++++|++++|.+
T Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~ 493 (558)
T PLN02546 446 EYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGED 493 (558)
T ss_pred cCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 11 0000 012356899988 57899999999986
No 56
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-33 Score=342.75 Aligned_cols=346 Identities=18% Similarity=0.276 Sum_probs=255.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----c-chhcc------cCcc-------cccccC--
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----L-SKQLD------IKAD-------SILLRT-- 654 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~-~~~~~------~~~~-------~~~~~~-- 654 (1466)
.+||+||||||||++||..|+++|++ |+++|+.+...+..+. . .+.+. .+.. .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~--V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWR--VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCe--EEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988 8888876432111111 0 11100 0110 111111
Q ss_pred --HhHh-hhCCcEEEEceEEEEeccccccEEEccCCC-EEecCEEEEcCCCCCCcCCCCCCCC---cEEEecCHHHHHhh
Q psy2951 655 --EEFY-KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANNI 727 (1466)
Q Consensus 655 --~~~~-~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 727 (1466)
...+ +..+++++.++ +..+ +.....+.+.++. ++.||+||||||++|..|++| |.+ +++ +..+...
T Consensus 81 ~~~~~~~~~~gv~~~~g~-~~~i-~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~-G~~~~~~v~---~~~~~~~- 153 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQ-AEFI-NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIP-GITTTPGVY---DSTGLLN- 153 (441)
T ss_pred hHHHHHhhcCCcEEEEEE-EEEe-cCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCC-CccCCCCEE---ChhHhhc-
Confidence 1122 23499999987 7777 7666777766664 699999999999999999999 864 333 2333322
Q ss_pred cccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC
Q psy2951 728 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807 (1466)
Q Consensus 728 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 807 (1466)
....+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++++++++++++.. +
T Consensus 154 --~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~ 229 (441)
T PRK08010 154 --LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-PREDRDIADNIATILRDQGVDIILNAHVERISHH-E 229 (441)
T ss_pred --ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-C
Confidence 22357899999999999999999999999999999988766 4568899999999999999999999999999843 3
Q ss_pred CceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceee
Q psy2951 808 NDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885 (1466)
Q Consensus 808 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 885 (1466)
+.+ .+.++++ ++++|.|++|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||+..+..
T Consensus 230 ~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~-------- 299 (441)
T PRK08010 230 NQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQF-------- 299 (441)
T ss_pred CEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCccc--------
Confidence 322 4444444 6899999999999999886 467789999899999999999999999999999986543
Q ss_pred eccHHHHHHHHHHHHHHhccC-CC---cCcccCeeeeeecCceeEEeeccCC------CCceeEec----------cccc
Q psy2951 886 IGHYQLAQYHGRIAALNMVEK-KT---SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVDIVG----------DLEA 945 (1466)
Q Consensus 886 ~~~~~~A~~~g~~aA~~i~~~-~~---~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~----------~~~~ 945 (1466)
.+.|..||++++.||+++ .. .+..+| +..++++.+..+|+++. ++-..... ..+.
T Consensus 300 ---~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p--~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 374 (441)
T PRK08010 300 ---TYISLDDYRIVRDELLGEGKRSTDDRKNVP--YSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT 374 (441)
T ss_pred ---hhHHHHHHHHHHHHHcCCCCcccCccCCCC--EEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC
Confidence 368999999999999985 22 223455 33366777888888752 11111110 1123
Q ss_pred ceEEEEEe--cCCeEEEEEeecCch
Q psy2951 946 LKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 946 ~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
.+|.|+++ ++++++|++++|.+.
T Consensus 375 ~g~~kli~d~~~~~ilG~~~~g~~a 399 (441)
T PRK08010 375 RGVLKAIVDNKTQRILGASLLCVDS 399 (441)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCH
Confidence 56888888 479999999999763
No 57
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=8.4e-34 Score=344.17 Aligned_cols=372 Identities=20% Similarity=0.267 Sum_probs=262.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC---C---CCCC---C-CCccchh----------------cccCcc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE---N---FLPY---D-RVKLSKQ----------------LDIKAD 96 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~---~---~~~~---~-~~~~~~~----------------~~~~~~ 96 (1466)
++|++||||||||+.||..+++.|.++.+++.... . .... . -+..++. +.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 58999999999999999999999999999874210 0 0000 0 0001111 011100
Q ss_pred -------------------cccccChhhhhcCCeEEEeCceEEEeccccccEEEec--CC--cEEecCEEEEccCCCCCC
Q psy2951 97 -------------------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ--DG--TSIDFTKIYLATGSSPRT 153 (1466)
Q Consensus 97 -------------------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~--~~--~~~~~d~lviAtG~~~~~ 153 (1466)
.+......+++..+++++.|...+.+. .++.+. ++ ..+.||+||||||++|+.
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~----~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ 157 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK----HRIKATNKKGKEKIYSAERFLIATGERPRY 157 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC----CEEEEeccCCCceEEEeCEEEEecCCCCCC
Confidence 011123345677899999999876532 345443 33 369999999999999976
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
++ +++.+... .+.++...+. ...++++|||||++|+|+|..|+++|.+||++++. .++ +.+++++.+.+.+.
T Consensus 158 p~-ipG~~~~~--~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~ 229 (484)
T TIGR01438 158 PG-IPGAKELC--ITSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDCANKVGEH 229 (484)
T ss_pred CC-CCCcccee--ecHHHhhccc---ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-cccCHHHHHHHHHH
Confidence 54 55543221 1334444332 23468999999999999999999999999999974 443 67899999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCCeEEEEcCCC---cEEeccEEEEeeccccCccc--cccCCceecC-CccEEECCCCC
Q psy2951 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLE 307 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~-~g~i~vd~~~~ 307 (1466)
|+++||++++++.+.+++..++ . ..+.+.++ +++++|.||+|+|++||+++ ++..|+++++ +|+|.||+++|
T Consensus 230 L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~ 307 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQIEA-K-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ 307 (484)
T ss_pred HHHcCCEEEeCceEEEEEEcCC-e-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc
Confidence 9999999999999999876432 2 23444444 47999999999999999987 4678888875 48999999999
Q ss_pred cCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCC---cccccccceeeEEEEeecC
Q psy2951 308 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIP---FFWTMLFGVGFRFAGYAAG 381 (1466)
Q Consensus 308 t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p---~~~s~~~~~~~~~~G~~~~ 381 (1466)
|+.|+|||+|||+... ...+..|..||+.+++||++.. ..+..+| |+.+....+ |.+..
T Consensus 308 Ts~p~IyA~GDv~~~~----------~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~v-----Glte~ 372 (484)
T TIGR01438 308 TNVPYIYAVGDILEDK----------QELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGAC-----GLSEE 372 (484)
T ss_pred cCCCCEEEEEEecCCC----------ccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeee-----cCCHH
Confidence 9999999999998531 1345679999999999998643 2345555 334443333 33221
Q ss_pred -------CceEE-----Ee--------cccCCCeEEEEEE-c--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc----
Q psy2951 382 -------HTQVD-----IV--------GDLEALKFTAYYS-N--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS---- 432 (1466)
Q Consensus 382 -------~~~~~-----~~--------g~~~~~~~~~~~~-~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~---- 432 (1466)
...+. +. ++....+|.+++. + +++|+|++++|. +++++.++ .+|+++.+.
T Consensus 373 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a-~ai~~~~t~~dl~ 451 (484)
T TIGR01438 373 KAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFA-AALRCGLTKKDLD 451 (484)
T ss_pred HHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHh
Confidence 00111 00 0111457888775 3 589999999998 55667777 899998876
Q ss_pred -ccccCcccchhh
Q psy2951 433 -LPHSHRCLGVVL 444 (1466)
Q Consensus 433 -~~~~~p~~~e~~ 444 (1466)
+++.|||++|.+
T Consensus 452 ~~~~~hPt~sE~~ 464 (484)
T TIGR01438 452 NTIGIHPVCAEVF 464 (484)
T ss_pred hhhcCCCChHHHH
Confidence 799999999988
No 58
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.3e-33 Score=342.25 Aligned_cols=372 Identities=19% Similarity=0.288 Sum_probs=262.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC----CC--CCCC---CC-Cccch-----------------hcc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD----EN--FLPY---DR-VKLSK-----------------QLD--- 92 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~----~~--~~~~---~~-~~~~~-----------------~~~--- 92 (1466)
++||+||||||||++||..|+++|.+|.|++..+ .. .+.. .. +..++ .+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999987421 10 0000 00 00010 000
Q ss_pred ---cCcccccccC-----------hhhhhcCCeEEEeCceEEEeccccccEEEecC---CcEEecCEEEEccCCCCCCCC
Q psy2951 93 ---IKADSILLRT-----------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 93 ---~~~~~~~~~~-----------~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~~~ 155 (1466)
.+..++..+. ...++..+|+++.+...+. +.+++.+.+ +..++||+||||||++|+.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~----~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~ 160 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK----DEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc----cCCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence 1111221111 2223346788888876543 235565532 347999999999999998654
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
.+++.... . .+.++...+. ..+++++|||+|++|+|+|..|+++|.+||++++. .++ +.+++++.+.+.+.|+
T Consensus 161 ~i~G~~~~-~-~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~l~ 233 (499)
T PTZ00052 161 DVPGAKEY-S-ITSDDIFSLS---KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-RGFDRQCSEKVVEYMK 233 (499)
T ss_pred CCCCccce-e-ecHHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-ccCCHHHHHHHHHHHH
Confidence 46654432 1 2444444433 23569999999999999999999999999999874 444 6788999999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCE
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGV 313 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~i 313 (1466)
++||++++++.+++++..+ +. ..+.+.+|+++++|.|++|+|++||++++ +..+++++++|++.+++. +|+.|+|
T Consensus 234 ~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~I 310 (499)
T PTZ00052 234 EQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNI 310 (499)
T ss_pred HcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCE
Confidence 9999999999999997643 22 33566778889999999999999999975 578899998898777777 9999999
Q ss_pred EEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCc---ccccccceeeEEEEeecC------
Q psy2951 314 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPF---FWTMLFGVGFRFAGYAAG------ 381 (1466)
Q Consensus 314 ya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~---~~s~~~~~~~~~~G~~~~------ 381 (1466)
||+|||+... +..+..|+.||+.++.||++... ++..+|+ +.+....+ |.+..
T Consensus 311 yAiGDv~~~~----------~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~v-----Glte~~A~~~~ 375 (499)
T PTZ00052 311 FAVGDVVEGR----------PELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGAC-----GYSSEAAIAKY 375 (499)
T ss_pred EEEEEecCCC----------cccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceee-----cCCHHHHHHhc
Confidence 9999998521 23567899999999999987532 3445553 33333333 33221
Q ss_pred -CceE-----EE-------ecc--------------cCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCC
Q psy2951 382 -HTQV-----DI-------VGD--------------LEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFP 429 (1466)
Q Consensus 382 -~~~~-----~~-------~g~--------------~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~ 429 (1466)
...+ .+ ... .+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~-~ai~~~ 454 (499)
T PTZ00052 376 GEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS-LALKLG 454 (499)
T ss_pred CCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH-HHHHCC
Confidence 0000 00 000 025789988775 489999999998 55677777 999988
Q ss_pred Ccc-----ccccCcccchhh
Q psy2951 430 YSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 430 ~~~-----~~~~~p~~~e~~ 444 (1466)
.+. +++.|||++|.+
T Consensus 455 ~t~~~l~~~~~~hPt~sE~~ 474 (499)
T PTZ00052 455 AKKSDFDSMIGIHPTDAEVF 474 (499)
T ss_pred CCHHHHhcccccCCCCchhh
Confidence 775 799999999988
No 59
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.7e-33 Score=340.39 Aligned_cols=358 Identities=18% Similarity=0.243 Sum_probs=252.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCCCc----cc------hhcc------cCc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDRVK----LS------KQLD------IKA 647 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~~~----~~------~~~~------~~~ 647 (1466)
...+||+||||||||++||..+++.|.+ |.++|++. |+|-.... .. ..++ .+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~--ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAK--VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCe--EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 3568999999999999999999999988 77787752 11110000 00 0000 011
Q ss_pred ccc-----------cccCHhHhhhCCcEEEEceEEEEecccccc--------------------EE------EccCCCEE
Q psy2951 648 DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEK--------------------KI------KLQDGTSI 690 (1466)
Q Consensus 648 ~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--------------------~v------~~~~~~~~ 690 (1466)
..+ .....+.+++.||+++.++ .... +...- ++ ...++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~-a~f~-~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i 201 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK-GSLL-SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEe-cCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence 111 1112234566799999998 4333 32211 12 12456789
Q ss_pred ecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccC
Q psy2951 691 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770 (1466)
Q Consensus 691 ~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~ 770 (1466)
+||+||||||++|..|+++ |.+.++ +.++...+. .+++|+|||+|++|+|+|..|++.|.+||++++.++++
T Consensus 202 ~ad~lVIATGS~P~~P~Ip-G~~~v~---ts~~~~~l~----~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPDVK-GKEFTI---SSDDFFKIK----EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred ECCEEEEecCCCCCCCCCC-CceeEE---EHHHHhhcc----CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 9999999999999999999 865332 334443322 38999999999999999999999999999999998776
Q ss_pred ccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccccc--CCceeeC
Q psy2951 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG--KGVELNG 848 (1466)
Q Consensus 771 ~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~--~gl~~~~ 848 (1466)
+.+++++.+.+.+.|+++||+++++..+.+++..+++.+.....++++++++|.|++|+|++|+++++.. .++. ++
T Consensus 274 -~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~ 351 (561)
T PTZ00058 274 -RKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TP 351 (561)
T ss_pred -ccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cC
Confidence 5789999999999999999999999999999854333343222334457999999999999999987643 3343 45
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCc----------------------ccCCcee-eeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLH----------------------SFYNKNA-SIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~----------------------~~~~~~~-~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
+|+|.||+++||+.|+|||+|||+..+.. ..++.+. .+++++.|..||+++|.||++
T Consensus 352 ~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 352 KGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999984321 1123333 367889999999999999997
Q ss_pred CCC---cCcccCeeeeeecC-ceeEEeeccCC-------CCceeEe--c-------------ccccceEEEEEe--cCCe
Q psy2951 906 KKT---SLSTIPFFWTMLFG-VGFRFAGYAAG-------HTQVDIV--G-------------DLEALKFTAYYS--NADK 957 (1466)
Q Consensus 906 ~~~---~~~~~~~~~~~~~~-~~~~~~g~~~~-------~~~~~~~--~-------------~~~~~~~~~~~~--~~~~ 957 (1466)
... .++.+|. .+|. +.+..+|+++. ....... . ..++..+.|+++ ++++
T Consensus 432 ~~~~~~~~~~ip~---~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ 508 (561)
T PTZ00058 432 PFSRTTNYKLIPS---VIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEEL 508 (561)
T ss_pred CCCcccCCCCCCe---EEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCE
Confidence 532 2344553 3455 46778887652 1111110 0 012457888888 4789
Q ss_pred EEEEEeecCc
Q psy2951 958 VLAILTVGMD 967 (1466)
Q Consensus 958 i~g~~~~g~~ 967 (1466)
++|++++|.+
T Consensus 509 ILG~~ivG~~ 518 (561)
T PTZ00058 509 IKGLHIVGLN 518 (561)
T ss_pred EEEEEEECCC
Confidence 9999999966
No 60
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3e-33 Score=343.43 Aligned_cols=373 Identities=18% Similarity=0.224 Sum_probs=260.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC---------CCCC-------------C------CCccc------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPY-------------D------RVKLS------ 88 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~---------~~~~-------------~------~~~~~------ 88 (1466)
+|||+|||+||||+.||..++++|.+|.|++.++.. ..|- . ...+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999998754211 1110 0 00000
Q ss_pred -------------hhcccCccc-----------ccccChhhhhcC-------CeEEEeCceEEEeccccccEEEec-CCc
Q psy2951 89 -------------KQLDIKADS-----------ILLRTEEFYKDN-------DIHVIKGKKIISDSELNEKKIKLQ-DGT 136 (1466)
Q Consensus 89 -------------~~~~~~~~~-----------~~~~~~~~~~~~-------~v~~~~~~~v~~~~~~~~~~v~~~-~~~ 136 (1466)
.....+... +...+...+++. +++++.+...+... .++.+. ++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~----~~v~v~~~g~ 271 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDK----NTIKSEKSGK 271 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecC----CeEEEccCCE
Confidence 000001011 111122334444 47888888766532 445443 566
Q ss_pred EEecCEEEEccCCCCCCCCCCCCC-CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecC
Q psy2951 137 SIDFTKIYLATGSSPRTISQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215 (1466)
Q Consensus 137 ~~~~d~lviAtG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 215 (1466)
++.||+||||||++|..++..+.. ..++ +.+++..+.. .+++++|||+|++|+|+|..++++|.+||++++.+
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~~~V~---ts~d~~~l~~---lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQKSVF---TSDTAVKLEG---LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCCCcEE---ehHHhhhhhh---cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 899999999999999865433211 2233 3455555432 25799999999999999999999999999999988
Q ss_pred cccccccCHHHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCCeEEEEcC-------CC--------cEEeccEEEEeec
Q psy2951 216 VPFQESLGKEVGERITKLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLD-------NG--------TTIPADLVIVGIG 279 (1466)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~l-~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-------~g--------~~i~~D~Vi~a~G 279 (1466)
.+++ .+++++.+.+.+.+ +++||++++++.|++++.++++....+.+. ++ +++++|.||+|+|
T Consensus 346 ~ll~-~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 346 QLLP-LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred cccc-cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 7764 68899999888875 679999999999999986543222223221 11 3799999999999
Q ss_pred cccCcccc--ccCCceecCCccEEECCCCCcC------CCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHh
Q psy2951 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETN------VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351 (1466)
Q Consensus 280 ~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 351 (1466)
++||++++ +..+++++. |+|.||++|||+ +|+|||+|||++.+ ..+..|..||+.+++||
T Consensus 425 r~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~-----------~La~~A~~qg~~aa~ni 492 (659)
T PTZ00153 425 RKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ-----------MLAHTASHQALKVVDWI 492 (659)
T ss_pred cccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCc-----------cCHHHHHHHHHHHHHHH
Confidence 99999874 677787764 899999999997 69999999998654 24568999999999999
Q ss_pred cCCC-------------C--CCCCCC---cccccccceeeEEEEeecCC-------ce-----EEEe--------cc---
Q psy2951 352 VEKK-------------T--SLSTIP---FFWTMLFGVGFRFAGYAAGH-------TQ-----VDIV--------GD--- 390 (1466)
Q Consensus 352 ~~~~-------------~--~~~~~p---~~~s~~~~~~~~~~G~~~~~-------~~-----~~~~--------g~--- 390 (1466)
.+.. . .+..+| |+.+....+|+ +... .+ ..+. ++
T Consensus 493 ~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGl-----TE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~ 567 (659)
T PTZ00153 493 EGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGL-----TEKEAKELYPPDNVGVEISFYKANSKVLCENNISF 567 (659)
T ss_pred cCCCccccccccccccccccccCcCCEEEECcCceEEeeC-----CHHHHHhcCCCcceEEEEEEecccchhhhcccccc
Confidence 8752 1 234555 33444444443 2210 00 0111 00
Q ss_pred -----------------cCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 391 -----------------LEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 391 -----------------~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 568 p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a-~aI~~~~tv~dl~~~~~~hPT~sE~~ 646 (659)
T PTZ00153 568 PNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGV-LAINLKLSVKDLAHMVHSHPTISEVL 646 (659)
T ss_pred ccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcCCCCChHHHH
Confidence 015789988885 589999999998 55666666 999999876 799999999988
No 61
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-33 Score=341.94 Aligned_cols=347 Identities=26% Similarity=0.327 Sum_probs=255.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccchh----------------cc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ----------------LD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~~----------------~~-------~~ 646 (1466)
..+||+||||||||++||..|+++|++ |+++|++. +++.. +..++. ++ .+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~--V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK--VAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc--EEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 458999999999999999999999998 78888764 22211 000000 00 01
Q ss_pred ccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccC-CCEEecCEEEEcCCCCCCcCCCCCCCC-
Q psy2951 647 ADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIYLATGSSPRTISQADGVN- 713 (1466)
Q Consensus 647 ~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~-~~~~~~d~lviAtG~~~~~~~~~~g~~- 713 (1466)
..++..+ +...+++.||+++.++ +..+ +....++...+ +.++.||+||||||++|..|+ |.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~-~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p---g~~~ 154 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV-DPNTVRVMTEDGEQTYTAKNIILATGSRPRELP---GIEI 154 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC---CCCC
Confidence 1112222 2334567899999998 6666 66666665433 368999999999999997653 433
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
+. ...+.+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++.+.+.+.|+++||+
T Consensus 155 ~~~-~v~~~~~~~~~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~ 229 (462)
T PRK06416 155 DGR-VIWTSDEALNLD---EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-PGEDKEISKLAERALKKRGIK 229 (462)
T ss_pred CCC-eEEcchHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-CcCCHHHHHHHHHHHHHcCCE
Confidence 22 222445544333 247999999999999999999999999999999998876 468899999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEECCCC---cEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCCCCeEE
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 867 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~~~iya 867 (1466)
+++++++++++..++ .+ .+.+.++ +++++|.||+|+|.+|+++++ +..|++++ +|++.+|+++||+.|+|||
T Consensus 230 i~~~~~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyA 306 (462)
T PRK06416 230 IKTGAKAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYA 306 (462)
T ss_pred EEeCCEEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEE
Confidence 999999999984332 23 4555555 679999999999999999874 67889888 8999999999999999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCcccCeeeeeecCceeEEeeccCC------CCceeEec
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG------HTQVDIVG 941 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~ 941 (1466)
+|||+..+. .+..|..||+.+|.||++....++.....+..+++..+..+|+++. .+-.....
T Consensus 307 iGD~~~~~~-----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~ 375 (462)
T PRK06416 307 IGDIVGGPM-----------LAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKF 375 (462)
T ss_pred eeecCCCcc-----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEE
Confidence 999986433 4578999999999999986554432222234467778888888752 11000100
Q ss_pred ----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 942 ----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 942 ----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
...+..+.|+++ ++++++|++++|.+
T Consensus 376 ~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~ 413 (462)
T PRK06416 376 PFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGAR 413 (462)
T ss_pred ecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 113456889888 57999999999976
No 62
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=4.2e-33 Score=337.10 Aligned_cols=370 Identities=21% Similarity=0.314 Sum_probs=262.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-------CCCCC----------------CCccc-hhcccCc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------FLPYD----------------RVKLS-KQLDIKA--- 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-------~~~~~----------------~~~~~-~~~~~~~--- 95 (1466)
++|++|||+||||+.||.. ..|.+|.++|.+.-. ..|-. ...+. .....+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 5899999999999998654 479999988743211 11100 00000 0000000
Q ss_pred --------c-cccccChhh-h--hcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcE
Q psy2951 96 --------D-SILLRTEEF-Y--KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 163 (1466)
Q Consensus 96 --------~-~~~~~~~~~-~--~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~ 163 (1466)
. .+....... + ++.+++++.++.++. +.++|.+.++.++.||+||||||++|..++..+. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~-~~~ 154 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV----GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIAD-SGV 154 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe----cCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCC-CCC
Confidence 0 011111111 1 237999999998766 3477888788889999999999999986653332 222
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEc
Q psy2951 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243 (1466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~ 243 (1466)
. +.+.++...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+ +.||++++
T Consensus 155 ~-~~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~~~-~~gI~i~~ 228 (452)
T TIGR03452 155 R-YHTNEDIMRLPE---LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-RHLDEDISDRFTEIA-KKKWDIRL 228 (452)
T ss_pred E-EEcHHHHHhhhh---cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-cccCHHHHHHHHHHH-hcCCEEEe
Confidence 2 346666666543 35799999999999999999999999999999987765 457888888877655 46899999
Q ss_pred CceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEeccccc
Q psy2951 244 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 321 (1466)
Q Consensus 244 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 321 (1466)
++.|++++.+++ .+ .+.+.+|+++++|.|++|+|++||++++ +..|++++++|+|.||+++||+.|+|||+|||+.
T Consensus 229 ~~~V~~i~~~~~-~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (452)
T TIGR03452 229 GRNVTAVEQDGD-GV-TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSS 306 (452)
T ss_pred CCEEEEEEEcCC-eE-EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccC
Confidence 999999986532 23 3556678889999999999999999984 5678999888999999999999999999999987
Q ss_pred ccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCc---ccccccceeeEEEEeecCC-----ceEEE--
Q psy2951 322 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPF---FWTMLFGVGFRFAGYAAGH-----TQVDI-- 387 (1466)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~---~~s~~~~~~~~~~G~~~~~-----~~~~~-- 387 (1466)
.+. ....|.+||+++++|+++.. ..+..+|+ +.+... ++|.+... .++..
T Consensus 307 ~~~-----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia-----~vGlte~ea~~~g~~~~~~~ 370 (452)
T TIGR03452 307 PYQ-----------LKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIA-----TVGLTEQEAREAGHDITVKI 370 (452)
T ss_pred ccc-----------ChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCee-----eeeCCHHHHHhcCCCeEEEE
Confidence 542 24579999999999999753 23455663 233333 33332210 01100
Q ss_pred -----ec----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----c-cccCcccchhh
Q psy2951 388 -----VG----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----L-PHSHRCLGVVL 444 (1466)
Q Consensus 388 -----~g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~-~~~~p~~~e~~ 444 (1466)
.+ ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. + .++|||++|.+
T Consensus 371 ~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~hPt~~e~~ 445 (452)
T TIGR03452 371 QNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLI-TAMAFGLDAREMARKQYWIHPALPEVV 445 (452)
T ss_pred ecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhCCcccCCchHHHH
Confidence 00 1245789998886 589999999998 44666666 899998875 3 67999999987
No 63
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.8e-33 Score=338.97 Aligned_cols=348 Identities=24% Similarity=0.359 Sum_probs=254.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC---------CCCCCC-----------------ccc-hhcc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LPYDRV-----------------KLS-KQLD 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~---------~~~~~~-----------------~~~-~~~~ 644 (1466)
....+||+||||||||++||..|+++|.+ |+++|++.. .|-... .+. ....
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~--v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGAR--VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCc--EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 34678999999999999999999999997 777777531 110000 000 0000
Q ss_pred cCcccccccC------------HhHhhhC-CcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCC
Q psy2951 645 IKADSILLRT------------EEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA 709 (1466)
Q Consensus 645 ~~~~~~~~~~------------~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~ 709 (1466)
.+...+..+. ...+++. +++++.++ +..+ +...+.|++.++ .+++||+||||||++|+.|++|
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~-v~~i-d~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~ 158 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGE-ARFV-DERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVP 158 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEE-EEEe-cCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCC
Confidence 1111221111 1223333 89999998 8888 888888888776 3799999999999999999999
Q ss_pred CCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc
Q psy2951 710 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789 (1466)
Q Consensus 710 ~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 789 (1466)
|.+...++ +..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++.+. +.+ +.+++++.+.+.+.|+++
T Consensus 159 -G~~~~~~~-~~~~~~~l~---~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l-~~~~~~~~~~l~~~l~~~ 231 (468)
T PRK14694 159 -GLAETPYL-TSTSALELD---HIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVL-SQEDPAVGEAIEAAFRRE 231 (468)
T ss_pred -CCCCCceE-cchhhhchh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCC-CCCCHHHHHHHHHHHHhC
Confidence 87632222 223333332 23789999999999999999999999999999874 444 467899999999999999
Q ss_pred CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCCCCeEE
Q psy2951 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 867 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~~~iya 867 (1466)
||+++++..+++++.. ++ ...+.+++ .++++|.||+|+|.+|+++++ +.++++. ++|+|.+|++++|+.|+|||
T Consensus 232 GI~v~~~~~v~~i~~~-~~-~~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 232 GIEVLKQTQASEVDYN-GR-EFILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred CCEEEeCCEEEEEEEc-CC-EEEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEE
Confidence 9999999999999843 22 23345444 479999999999999999874 5677775 57899999999999999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CCc--e
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQ--V 937 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~--~ 937 (1466)
+|||+..+.. .+.|..||++||.||++....+ ..+|. ..++++.+..+|+++. ++- .
T Consensus 308 ~GD~~~~~~~-----------~~~A~~~G~~aa~~i~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~ 374 (468)
T PRK14694 308 AGDCTDQPQF-----------VYVAAAGGSRAAINMTGGDASLDLSAMPE--VIFTDPQVATVGLSEAEAQAQGYDTDSR 374 (468)
T ss_pred EeecCCCccc-----------HHHHHHHHHHHHHHhcCCCcccccCCCCe--EEECCCCeEEeeCCHHHHHHcCCceEEE
Confidence 9999976553 3689999999999999765433 33443 3467778888888752 111 1
Q ss_pred eEec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 938 DIVG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 938 ~~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.... ..+...|+|+++ ++++++|++++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 414 (468)
T PRK14694 375 TLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGE 414 (468)
T ss_pred EEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 1110 112466899988 57999999999987
No 64
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=4.1e-33 Score=341.11 Aligned_cols=344 Identities=20% Similarity=0.290 Sum_probs=253.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cchh---------------c-------ccCc--
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQ---------------L-------DIKA-- 647 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~~---------------~-------~~~~-- 647 (1466)
+||+||||||||++||..|+++|++ |+++|++. +++.... .++. + ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~--v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS--VAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe--EEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 5899999999999999999999998 77888764 2221100 0000 0 0011
Q ss_pred -----ccccc-----cCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 648 -----DSILL-----RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 648 -----~~~~~-----~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
+++.. .....+++.+++++.++ +..+ + .+++.+.++ ..+.||+||||||++|+.|++| |.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~-~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~-G~~~~~ 152 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK-D--PKTVKVDLGREVRGAKRFLIATGARPAIPPIP-GLKEAG 152 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc-c--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCC-CcccCc
Confidence 11111 12345677899999988 5554 3 456776654 3689999999999999999999 876321
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+..++.... ..+++++|||+|++|+|+|..|+++|.+|+++++.++++ +.+++++...+.+.+++.||+++++
T Consensus 153 -~~~~~~~~~~~---~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (463)
T TIGR02053 153 -YLTSEEALALD---RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-PREEPEISAAVEEALAEEGIEVVTS 227 (463)
T ss_pred -eECchhhhCcc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-CccCHHHHHHHHHHHHHcCCEEEcC
Confidence 12333333222 236999999999999999999999999999999998876 4578999999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECC---CCcEEecCEEEEccccccCcc-c-cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLD---NGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++++++..++. ..+.+. +++++++|.||+|+|++|+++ + ++..+++++++|+|.||+++||+.|+|||+|||
T Consensus 228 ~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~ 305 (463)
T TIGR02053 228 AQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV 305 (463)
T ss_pred cEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeec
Confidence 999999843222 233332 346899999999999999988 5 678899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCcC--cccCeeeeeecCceeEEeeccCC------CCceeE--e
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQVDI--V 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~--~ 940 (1466)
+..+. .++.|..||++||.||++. ...+ ..+| +..+++..+..+|+++. ++-... .
T Consensus 306 ~~~~~-----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p--~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~ 372 (463)
T TIGR02053 306 TGGLQ-----------LEYVAAKEGVVAAENALGGANAKLDLLVIP--RVVFTDPAVASVGLTEAEAQKAGIECDCRTLP 372 (463)
T ss_pred CCCcc-----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCC--eEEeccCceEEEeCCHHHHHhcCCCeEEEEEe
Confidence 97643 3478999999999999986 4433 3344 33456677888887652 110000 0
Q ss_pred --c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 --G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 --~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. ..+...|.|+++ ++++++|++++|.+
T Consensus 373 ~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 409 (463)
T TIGR02053 373 LTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPE 409 (463)
T ss_pred cccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 0 112467899888 47999999999987
No 65
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.1e-33 Score=338.42 Aligned_cols=372 Identities=20% Similarity=0.288 Sum_probs=260.3
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------ccc---------Ccccc
Q psy2951 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDI---------KADSI 98 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~---------~~~~~ 98 (1466)
+|+||||||||++||..|++.|.++.|++.+.-......+ +..++. ++. +...+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 7999999999999999999999998887743311000000 000111 011 11111
Q ss_pred c-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC-cEEecCEEEEccCCCCCCCCCCCCCCcEEEe
Q psy2951 99 L-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVFYL 166 (1466)
Q Consensus 99 ~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~ 166 (1466)
. ......+++.+++++.++..+. +....++..+++ .+++||+||||||++|+.+|. ++......+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~-~~~~~~~v~ 158 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFE--TDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPF-APFDGKWII 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEc--cCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCC-CCCCCCeEE
Confidence 1 1223345567899999987654 333334444444 369999999999999986653 332222222
Q ss_pred cCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246 (1466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 246 (1466)
+..++..+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++ .+++++.+.+.+.|++.||+++++++
T Consensus 159 -~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-~~d~e~~~~l~~~L~~~GI~i~~~~~ 233 (458)
T PRK06912 159 -NSKHAMSLP---SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-GEDEDIAHILREKLENDGVKIFTGAA 233 (458)
T ss_pred -cchHHhCcc---ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-cccHHHHHHHHHHHHHCCCEEEECCE
Confidence 334444433 2357999999999999999999999999999999887764 56889999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEcCCC-cEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 247 VSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 247 v~~i~~~~~~~~~~v~~~~g-~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
+++++.++ . ...+..+++ .++++|.|++|+|++||++++ +..+++++++| +.||+++||+.|+|||+|||+..+
T Consensus 234 V~~i~~~~-~-~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~ 310 (458)
T PRK06912 234 LKGLNSYK-K-QALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGI 310 (458)
T ss_pred EEEEEEcC-C-EEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCc
Confidence 99997643 2 222332222 369999999999999999854 56788887766 999999999999999999998643
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCc---ccccccceeeEEEEeecCC-----ceE-----EEe
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPF---FWTMLFGVGFRFAGYAAGH-----TQV-----DIV 388 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~---~~s~~~~~~~~~~G~~~~~-----~~~-----~~~ 388 (1466)
..+..|..||+.++.|+++.... +..+|. +.++...+| .+... .++ .+.
T Consensus 311 -----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vG-----lte~~a~~~g~~~~~~~~~~~ 374 (458)
T PRK06912 311 -----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVG-----LTEKQAREQYGDIRIGEFPFT 374 (458)
T ss_pred -----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEee-----CCHHHHHHCCCCeEEEEEecC
Confidence 34568999999999999976433 345553 233333333 32210 000 011
Q ss_pred ------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
-..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 375 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 444 (458)
T PRK06912 375 ANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGT-VMIHTEVTADIMEDFIAAHPTLSEAI 444 (458)
T ss_pred cchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcccCCCHHHHH
Confidence 01135789999886 489999999998 45666666 899988875 799999999988
No 66
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=342.38 Aligned_cols=305 Identities=23% Similarity=0.306 Sum_probs=244.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
..+++|||||||+||+++|..|.+.+ .+|+++++++++.|... +..... .+.+++...+...+...+++++.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~--~~ItlI~~~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~- 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK--YNITVISPRNHMLFTPL-LPQTTTGTLEFRSICEPVRPALAKLPNRYLRAV- 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC--CeEEEEcCCCCcchhhh-HHHhcccCCChHHhHHHHHHHhccCCeEEEEEE-
Confidence 45689999999999999999997554 45999999988777543 222221 3344555555666777889998887
Q ss_pred EEEeccccccEEEc----------cCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccC--------
Q psy2951 671 IISDSELNEKKIKL----------QDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHI-------- 731 (1466)
Q Consensus 671 v~~i~~~~~~~v~~----------~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------- 731 (1466)
|+.+ |.+++.+.+ .++.+++||+||||||+++..+++| |.+ .++.++++.++..+.+.+
T Consensus 84 V~~I-d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip-G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 84 VYDV-DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP-GVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEE-EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC-CHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999 998888887 4567899999999999999999999 876 566778888776654322
Q ss_pred ---------CCCCcEEEECCChHHHHHHHHHhc--------------cCCeEEEEeecCccCccccCHHHHHHHHHHHHh
Q psy2951 732 ---------TPESNVVVIGSSFIGMEAAAFCAS--------------KVKSVTVVGRGAVPFQESLGKEVGERITKLFES 788 (1466)
Q Consensus 732 ---------~~~~~vvVvG~G~~g~e~A~~l~~--------------~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 788 (1466)
.+.++++|||+|++|+|+|..|++ .+.+|+++++.++++ +.+++++.+.+.+.|++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-~~~~~~~~~~~~~~L~~ 240 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-GSFDQALRKYGQRRLRR 240 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-ccCCHHHHHHHHHHHHH
Confidence 112589999999999999998875 368999999998877 47889999999999999
Q ss_pred cCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCC-CCCCCeEE
Q psy2951 789 KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNVPGVYA 867 (1466)
Q Consensus 789 ~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-t~~~~iya 867 (1466)
+||+++++++++++..+ .+.+++|+++++|++|+++|.+|+ ++++.++++++++|+|.||+++| +++|||||
T Consensus 241 ~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfA 313 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFA 313 (424)
T ss_pred CCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEE
Confidence 99999999999999832 466889999999999999999998 58888889888899999999999 58999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC-cccCeee
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL-STIPFFW 917 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~-~~~~~~~ 917 (1466)
+|||+..+.. ..++.++.|++||..+|.||....... +..||.+
T Consensus 314 iGD~a~~~~~------~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 314 LGDCAANEER------PLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred EeccccCCCC------CCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 9999986432 123467899999999999998654333 3455544
No 67
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.8e-33 Score=339.36 Aligned_cols=347 Identities=21% Similarity=0.336 Sum_probs=253.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCCCccch----------hccc----------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDRVKLSK----------QLDI---------- 645 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~~~~~~----------~~~~---------- 645 (1466)
+++|+||||||||+.||..++++|.+ |++++++. |.|........ .++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~--v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGAD--VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe--EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 46899999999999999999999988 77777754 22211000000 0000
Q ss_pred Ccccc-----------cccCHhHhhhCCcEEEEceEEEEe---ccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCC
Q psy2951 646 KADSI-----------LLRTEEFYKDNDIHVIKGKKIISD---SELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQA 709 (1466)
Q Consensus 646 ~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i---~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~ 709 (1466)
+...+ .....+.+++.+|+++.++ +..+ .+.....+.+.+|. ++.||+||||||++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCC
Confidence 00011 1123345667899999998 6552 14444556555665 799999999999999877654
Q ss_pred CCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHH
Q psy2951 710 DGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 787 (1466)
Q Consensus 710 ~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~ 787 (1466)
+.+ .++...++. .+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++.+.+.+.|+
T Consensus 158 -~~~~~~v~~~~~~~---~~~---~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~L~ 229 (466)
T PRK07845 158 -EPDGERILTWRQLY---DLD---ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-PGEDADAAEVLEEVFA 229 (466)
T ss_pred -CCCCceEEeehhhh---ccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-CCCCHHHHHHHHHHHH
Confidence 333 454433322 222 237899999999999999999999999999999998777 4578999999999999
Q ss_pred hcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCe
Q psy2951 788 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGV 865 (1466)
Q Consensus 788 ~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~i 865 (1466)
++||++++++++.+++..+ +.+ .+.+.+|+++++|.|++++|++|++++ +++.|++++++|+|.||+++||+.|+|
T Consensus 230 ~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~I 307 (466)
T PRK07845 230 RRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGI 307 (466)
T ss_pred HCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCE
Confidence 9999999999999997432 233 466678889999999999999999885 578899999999999999999999999
Q ss_pred EEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeec-CceeEEeeccCC------CC
Q psy2951 866 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLF-GVGFRFAGYAAG------HT 935 (1466)
Q Consensus 866 ya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~-~~~~~~~g~~~~------~~ 935 (1466)
||+|||+..+. .++.|..||++||.||++... .+..+| +.+| ...+..+|+++. ++
T Consensus 308 yA~GD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p---~~vf~~p~~a~vGlte~~a~~~g~~ 373 (466)
T PRK07845 308 YAAGDCTGVLP-----------LASVAAMQGRIAMYHALGEAVSPLRLKTVA---SNVFTRPEIATVGVSQAAIDSGEVP 373 (466)
T ss_pred EEEeeccCCcc-----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCC---EEEeCCCcceeecCCHHHHHhCCCc
Confidence 99999987543 457999999999999997542 223444 2345 456777787642 11
Q ss_pred ceeEe--c--------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 936 QVDIV--G--------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 ~~~~~--~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
-.... . .-....|+|+++ ++++++|++++|.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a 418 (466)
T PRK07845 374 ARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRA 418 (466)
T ss_pred eEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 00000 0 012457899988 478999999999763
No 68
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=4.8e-33 Score=336.01 Aligned_cols=345 Identities=20% Similarity=0.286 Sum_probs=250.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCccEEEEcCC--------CCCCCC----CCccchh----------------cc
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITDE--------NFLPYD----RVKLSKQ----------------LD 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~-g~~~~v~~~~~~--------~~~~~~----~~~~~~~----------------~~ 644 (1466)
+.+||+||||||||+.||..++++ |.+ |.++|++ ..+++. -|-.++. ++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~--V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKR--VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCE--EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 468999999999999999999997 888 7777752 111110 0000000 00
Q ss_pred ---------cCcccccc-----------cCHhHhhh-CCcEEEEceEEEEeccccccEEEccC--------CCEEecCEE
Q psy2951 645 ---------IKADSILL-----------RTEEFYKD-NDIHVIKGKKIISDSELNEKKIKLQD--------GTSIDFTKI 695 (1466)
Q Consensus 645 ---------~~~~~~~~-----------~~~~~~~~-~gv~~~~~~~v~~i~~~~~~~v~~~~--------~~~~~~d~l 695 (1466)
.+...+.. ...+.+++ .|++++.+. ...+ +. ++|.+.. ..++.||+|
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~f~-~~--~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GALE-DK--NVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EEEc-cC--CEEEEeeccCCCCCcceEEECCEE
Confidence 01111111 11223555 499999998 5554 43 4444321 247999999
Q ss_pred EEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc---CCeEEEEeecCccCcc
Q psy2951 696 YLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQE 772 (1466)
Q Consensus 696 viAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~~~~ 772 (1466)
|||||++|..|+++ |.+.++ +.++...+. ..+++++|||+|++|+|+|..+..+ |.+|||+++.++++ +
T Consensus 156 IIATGs~p~~p~i~-G~~~~~---~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~ 227 (486)
T TIGR01423 156 LLATGSWPQMLGIP-GIEHCI---SSNEAFYLD---EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-R 227 (486)
T ss_pred EEecCCCCCCCCCC-Chhhee---chhhhhccc---cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-c
Confidence 99999999999999 876443 344443332 3479999999999999999877654 99999999998877 5
Q ss_pred ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCC
Q psy2951 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQK 850 (1466)
Q Consensus 773 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G 850 (1466)
.+++++.+.+.+.|+++||++++++.+++++..++ ....+.+.+++++++|.|++|+|++|++++ ++..+++++++|
T Consensus 228 ~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G 306 (486)
T TIGR01423 228 GFDSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKG 306 (486)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCC
Confidence 78999999999999999999999999999984433 334566677889999999999999999886 467899999999
Q ss_pred cEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecC-ceeE
Q psy2951 851 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFG-VGFR 926 (1466)
Q Consensus 851 ~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~-~~~~ 926 (1466)
+|.||+++||+.|+|||+|||+..+.. ++.|.+||+++|+||++... .+..+|. .+|. +.+.
T Consensus 307 ~I~Vd~~l~Ts~~~IyA~GDv~~~~~l-----------~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~peia 372 (486)
T TIGR01423 307 AIQVDEFSRTNVPNIYAIGDVTDRVML-----------TPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPPIG 372 (486)
T ss_pred CEecCCCCcCCCCCEEEeeecCCCccc-----------HHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCceE
Confidence 999999999999999999999876543 36899999999999997542 2334552 3444 3577
Q ss_pred EeeccCCC-----Ccee--Eec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 927 FAGYAAGH-----TQVD--IVG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 927 ~~g~~~~~-----~~~~--~~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.+|+++.. .... ... ......|.|+++ ++++++|+++++..
T Consensus 373 ~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~ 432 (486)
T TIGR01423 373 TCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDS 432 (486)
T ss_pred EeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCC
Confidence 78876521 1110 000 001246888888 46899999999966
No 69
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.9e-33 Score=343.02 Aligned_cols=376 Identities=26% Similarity=0.309 Sum_probs=258.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccch----------------hcc-------cCccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSK----------------QLD-------IKADS 97 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~----------------~~~-------~~~~~ 97 (1466)
.++||+||||||||++||..|++.|.++.|++.+.-.... ...+..++ .+. .+..+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 4689999999999999999999999998887652110000 00000010 000 01111
Q ss_pred cccc-----------C-hhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCCCCCcEE
Q psy2951 98 ILLR-----------T-EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF 164 (1466)
Q Consensus 98 ~~~~-----------~-~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~~~~~~~ 164 (1466)
+..+ . ...++..+++++.+..... +.+++.+ ++.++.||+||||||++ |.. |.........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~----~~~~v~v-~~~~~~~d~lIiATGs~~p~i-pg~~~~~~~~ 155 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFV----DPNTVEV-NGERIEAKNIVIATGSRVPPI-PGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEc----cCCEEEE-CcEEEEeCEEEEeCCCCCCCC-CCCcccCCCc
Confidence 1111 1 2234556788887765433 2245555 56789999999999998 432 2221101111
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q psy2951 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244 (1466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~ 244 (1466)
+.+..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++++.+.++ +.+++++.+.+.+.|+++ |+++++
T Consensus 156 -~~~~~~~~~~~---~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 156 -LLTSDDAFELD---KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred -EECchHHhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cchhHHHHHHHHHHHhhc-cEEEcC
Confidence 11334443332 245899999999999999999999999999999988766 467889999999999999 999999
Q ss_pred ceEEEEEecCCCCeEEEEc--CCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 245 ANVSSFEKNEKNDVTAANL--DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 245 ~~v~~i~~~~~~~~~~v~~--~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
+++.+++.+++..+. +.+ .+++++++|.|++|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+|||+
T Consensus 230 ~~v~~i~~~~~~~v~-~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~ 308 (460)
T PRK06292 230 AKVTSVEKSGDEKVE-ELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVN 308 (460)
T ss_pred CEEEEEEEcCCceEE-EEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecC
Confidence 999999865321222 222 33357999999999999999985 5678899988899999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCC-CC--CCCCCCcccccccceeeEEEEeecCC-----ceE-----EE
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KT--SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DI 387 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~--~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~ 387 (1466)
..+ ..+..|..||+.+|.||++. .. .+..+|+.. .....+..+|.+... .++ .+
T Consensus 309 ~~~-----------~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~a~vG~te~~a~~~g~~~~~~~~~~ 375 (460)
T PRK06292 309 GKP-----------PLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVV--FTDPQIASVGLTEEELKAAGIDYVVGEVPF 375 (460)
T ss_pred CCc-----------cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEE--ECCCccEEeECCHHHHHhcCCCeEEEEEec
Confidence 754 23567999999999999974 22 234555321 111223344433210 011 11
Q ss_pred e--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 388 V--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 388 ~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. . ..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (460)
T PRK06292 376 EAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLA-WAMQQGLTVEDLLRMPFYHPTLSEGL 446 (460)
T ss_pred ccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCccCCCCHHHHH
Confidence 1 0 1135789988886 489999999998 45666666 999988875 799999999988
No 70
>KOG0405|consensus
Probab=100.00 E-value=2.1e-33 Score=293.21 Aligned_cols=381 Identities=21% Similarity=0.289 Sum_probs=281.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC--------CCCC---------------------CCCCcc---
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE--------NFLP---------------------YDRVKL--- 87 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~--------~~~~---------------------~~~~~~--- 87 (1466)
..+.+|.+|||||-+|+.+|+++++.|.++.|+|..-. ...| |.....
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 34589999999999999999999999999999876511 0111 111000
Q ss_pred -chhcccCcccccccC----hhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCC
Q psy2951 88 -SKQLDIKADSILLRT----EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 88 -~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
++.+....+....++ +..+.+.+++++.|...+. ++.+.+|...++. .+++++++||||++|..| .+|+.
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~--~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P-nIpG~ 173 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFV--SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIP-NIPGA 173 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEc--CCCceEEEecCCeeEEEecceEEEEeCCccCCC-CCCch
Confidence 001111223333343 3344566899999998765 4455667776774 378999999999999854 78877
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+... +.+.+..+.. .++|++|+|+|++++|+|..++.+|.+++++-|.+..+ +.|++.+++.+.+.|+.+||+
T Consensus 174 E~gi---dSDgff~Lee---~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R~FD~~i~~~v~~~~~~~gin 246 (478)
T KOG0405|consen 174 ELGI---DSDGFFDLEE---QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-RGFDEMISDLVTEHLEGRGIN 246 (478)
T ss_pred hhcc---ccccccchhh---cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-cchhHHHHHHHHHHhhhccee
Confidence 6433 3344444432 35799999999999999999999999999999988776 789999999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
+|.++.++++.+..++.. .+....+....+|.++||+|+.||+.- ++..|++++++|.|.||++.+||+|+||++||
T Consensus 247 vh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGD 325 (478)
T KOG0405|consen 247 VHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGD 325 (478)
T ss_pred ecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecc
Confidence 999999999988765433 344555666669999999999999874 58889999999999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCC----CCCCCCCC---cccccccceeeEE------EE-----eec
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK----KTSLSTIP---FFWTMLFGVGFRF------AG-----YAA 380 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~----~~~~~~~p---~~~s~~~~~~~~~------~G-----~~~ 380 (1466)
+++.- ...+.|.+.|+..+..+.+. ..+|..+| |+.|....+|+.. .| ...
T Consensus 326 v~gk~-----------~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~ 394 (478)
T KOG0405|consen 326 VTGKI-----------NLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYT 394 (478)
T ss_pred ccCcE-----------ecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEe
Confidence 98753 44467999999999998873 34677887 5677776666511 01 011
Q ss_pred CCceE---EEecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 381 GHTQV---DIVGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 381 ~~~~~---~~~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+.++. ...+..+ ..+.++++. ..+++|+++.|. ++..+.++ -++.|+.++ ++..|||.+|.+
T Consensus 395 s~F~pm~~a~~~~k~-kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~-VAvKmGaTKadFD~tVaIHPTSAEEl 468 (478)
T KOG0405|consen 395 SKFNPMKYAMSGRKE-KTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFA-VAVKMGATKADFDSTVAIHPTSAEEL 468 (478)
T ss_pred cCCchhHhHhhcCCc-ceEEEEEEecCCCcEEEEEEecCCcHHHHhhhh-hheecCcchhhhccceeecCCCHHHh
Confidence 11111 1223322 344555555 389999999999 45666777 899999987 899999999988
No 71
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=9.6e-33 Score=333.40 Aligned_cols=343 Identities=21% Similarity=0.286 Sum_probs=250.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCC----------------Cccc-hhcccCccc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDR----------------VKLS-KQLDIKADS 649 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~----------------~~~~-~~~~~~~~~ 649 (1466)
+|++||||||||.+||.. ..|.+ |.++|++. |.|-.. ..+. .....+..+
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~--V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKR--IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCe--EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence 799999999999999876 45877 77888753 222100 0000 000011111
Q ss_pred c-------ccc-----CHhH-hhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 650 I-------LLR-----TEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 650 ~-------~~~-----~~~~-~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
+ ..+ .... ++..|++++.++ ...+ +.++|++.++++++||+||||||++|+.|+++ |.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~---~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~-g~~~~~ 152 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI---GPKTLRTGDGEEITADQVVIAAGSRPVIPPVI-ADSGVR 152 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe---cCCEEEECCCCEEEeCEEEEcCCCCCCCCCCC-CcCCcc
Confidence 1 111 1122 556799999998 5555 46778777778899999999999999999999 765332
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+.++...+.. .+++++|||+|++|+|+|..|+++|.+|+++++.++++ +.+++++.+.+.+.+ +.||+++++
T Consensus 153 -~~~~~~~~~l~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~l~-~~~v~i~~~ 226 (451)
T PRK07846 153 -YHTSDTIMRLPE---LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELA-SKRWDVRLG 226 (451)
T ss_pred -EEchHHHhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHH-hcCeEEEeC
Confidence 235555544432 37999999999999999999999999999999998876 568888888877654 578999999
Q ss_pred ceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCCCCeEEecccccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~ 874 (1466)
+++++++.. ++. ..+.+.+|+++++|.|++|+|++|+++++ +..+++++++|+|.||+++||+.|+|||+|||+..
T Consensus 227 ~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~ 304 (451)
T PRK07846 227 RNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSP 304 (451)
T ss_pred CEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCC
Confidence 999999843 322 34667788899999999999999999885 67899999999999999999999999999999976
Q ss_pred CCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CC--ceeEec-
Q psy2951 875 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HT--QVDIVG- 941 (1466)
Q Consensus 875 ~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~~- 941 (1466)
+. ..+.|.+||+++|+||++... .+..+|... +....+..+|+++. ++ .....-
T Consensus 305 ~~-----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i--f~~p~ia~vGlte~~a~~~g~~~~~~~~~~~ 371 (451)
T PRK07846 305 YQ-----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAV--FTHPQIASVGLTENEARAAGLDITVKVQNYG 371 (451)
T ss_pred cc-----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEE--ECCCCcEeEeCCHHHHHhcCCCEEEEEEecC
Confidence 54 346899999999999997521 245566432 33456777887652 11 000000
Q ss_pred -------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 942 -------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 942 -------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..+...|.|+++ ++++++|++++|.+.
T Consensus 372 ~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a 407 (451)
T PRK07846 372 DVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQA 407 (451)
T ss_pred cchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 112457899988 479999999999763
No 72
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.9e-32 Score=342.63 Aligned_cols=347 Identities=23% Similarity=0.346 Sum_probs=254.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch---------------hc--c-------c
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK---------------QL--D-------I 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~---------------~~--~-------~ 645 (1466)
..+||+||||||||++||..|+++|.+ |.++|++. +++.. +..++ .+ + .
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~--v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR--VTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe--EEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 368999999999999999999999998 77777752 22110 00000 00 1 1
Q ss_pred Cccccccc------------CHhHhhhC-CcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCC
Q psy2951 646 KADSILLR------------TEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQAD 710 (1466)
Q Consensus 646 ~~~~~~~~------------~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~ 710 (1466)
+.+.+..+ ....+.+. +|+++.++ +..+ +.....+.+.++. +++||+||||||++|..|+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~- 250 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFK-DDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIP- 250 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEe-cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC-
Confidence 11111111 11223444 89999997 7777 7666677665653 699999999999999999999
Q ss_pred CCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcC
Q psy2951 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 790 (1466)
Q Consensus 711 g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~g 790 (1466)
|.+....+.+. +.... ...+++++|||+|++|+|+|..|+++|.+|+++.+.. .+ +.+++++.+.+.+.|++.|
T Consensus 251 g~~~~~~~~~~-~~~~~---~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 251 GLKETPYWTST-EALVS---DTIPERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-FREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCccceEccH-HHhhc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-cccCHHHHHHHHHHHHHCC
Confidence 87632223222 22211 2347999999999999999999999999999999854 34 4578999999999999999
Q ss_pred cEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEe
Q psy2951 791 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 868 (1466)
Q Consensus 791 v~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~ 868 (1466)
|++++++.+++++.. ++. ..+.++++ ++++|.||+|+|++||+.+ +++.|++++++|+|.||+++||+.|+|||+
T Consensus 325 I~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~ 401 (561)
T PRK13748 325 IEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAA 401 (561)
T ss_pred CEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEe
Confidence 999999999999743 332 33555554 6999999999999999985 577899999999999999999999999999
Q ss_pred ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CCc--ee
Q psy2951 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQ--VD 938 (1466)
Q Consensus 869 GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~--~~ 938 (1466)
|||+..+... +.|..||++||.||++....+ ..+| +..+++..+..+|+++. ++- ..
T Consensus 402 GD~~~~~~~~-----------~~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~p~~a~vGlte~~a~~~g~~~~~~~ 468 (561)
T PRK13748 402 GDCTDQPQFV-----------YVAAAAGTRAAINMTGGDAALDLTAMP--AVVFTDPQVATVGYSEAEAHHDGIETDSRT 468 (561)
T ss_pred eecCCCccch-----------hHHHHHHHHHHHHHcCCCcccCCCCCC--eEEEccCCceeeeCCHHHHHHcCCCeEEEE
Confidence 9999766433 679999999999999865443 3344 33467777888888752 111 11
Q ss_pred Eec--------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 939 IVG--------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 939 ~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
... ..+...|.|+++ ++++++|++++|...
T Consensus 469 ~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a 508 (561)
T PRK13748 469 LTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEA 508 (561)
T ss_pred EecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCH
Confidence 100 112467899988 479999999999763
No 73
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.1e-32 Score=331.95 Aligned_cols=352 Identities=22% Similarity=0.329 Sum_probs=278.1
Q ss_pred HHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cC-cccccccCHh-HhhhCCcEEEEceEEEEeccccccEEEc
Q psy2951 609 TCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IK-ADSILLRTEE-FYKDNDIHVIKGKKIISDSELNEKKIKL 684 (1466)
Q Consensus 609 ~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~~gv~~~~~~~v~~i~~~~~~~v~~ 684 (1466)
+||+.|++++.+.+|+++++++++.|....+..... .. .+++..+..+ ++.+.|++++.+++|+.+ +...+.+.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~i-d~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEV-NDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEE-ECCCCEEEE
Confidence 489999998878889999999987776654443322 11 2233444433 458889999989889999 877777776
Q ss_pred cC---CCEEe--cCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccC--CCCCcEEEECCChHHHHHHHHHhc
Q psy2951 685 QD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHI--TPESNVVVIGSSFIGMEAAAFCAS 755 (1466)
Q Consensus 685 ~~---~~~~~--~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~ 755 (1466)
.+ +.++. ||+||||||++|..|+++ |.+ .++..+++.++..+...+ ..+++|+|||+|++|+|+|..|++
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~~i~-G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~ 158 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVPNIE-GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE 158 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh
Confidence 53 35677 999999999999999999 865 678888888877766554 357999999999999999999999
Q ss_pred cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 756 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 756 ~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
.|.+|+++++.+.++.+.+++++.+.+.+.|++.||+++++..+++++.. +.+ +.+.+|+++++|.+|+|+|++|+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCccCC
Confidence 99999999999877556788899999999999999999999999999832 222 45667889999999999999999
Q ss_pred ccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCccc-C
Q psy2951 836 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTI-P 914 (1466)
Q Consensus 836 ~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~-~ 914 (1466)
+++++.++++++++|+|.||++++|+.|+|||+|||+..+... .+.+..+++++.|.+||+++|+||++....++.. +
T Consensus 235 ~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~-~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~ 313 (427)
T TIGR03385 235 SELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII-TKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLG 313 (427)
T ss_pred HHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc-CCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcce
Confidence 9999999999998999999999999999999999999877654 3444556788999999999999999876555433 2
Q ss_pred eeeeeecCceeEEeeccCC------CCce--eEec-------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 915 FFWTMLFGVGFRFAGYAAG------HTQV--DIVG-------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 915 ~~~~~~~~~~~~~~g~~~~------~~~~--~~~~-------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
..+..+++.++..+|+++. .+-. .... ..++..+.|+++ ++++++|++++|..
T Consensus 314 ~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~ 383 (427)
T TIGR03385 314 TNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKE 383 (427)
T ss_pred eeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccc
Confidence 3345577888888887652 1111 1100 012345889888 46999999999987
No 74
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-32 Score=331.54 Aligned_cols=343 Identities=18% Similarity=0.263 Sum_probs=250.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----c-chhc------ccCcccc-----------cc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----L-SKQL------DIKADSI-----------LL 652 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~-~~~~------~~~~~~~-----------~~ 652 (1466)
.+||+||||||||++||..|+++|++ |+++|+++...+..+. . .+.+ ..+...+ ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~--V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKK--VALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCE--EEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988 8888887532111111 1 1110 0111111 11
Q ss_pred cCHhHhhhCCcEEEEceEEEEeccccccEEEccC---CCEEecCEEEEcCCCCCCcCCCCCCCC---cEEEecCHHHHHh
Q psy2951 653 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANN 726 (1466)
Q Consensus 653 ~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~~~~~~g~~---~~~~~~~~~~~~~ 726 (1466)
...+.+.+.+|+++.++ +..+ + .+++.+.. ..++.||+||||||++|+.|++| |.+ .++ +..++..
T Consensus 81 ~~~~~~~~~gV~~~~g~-~~~~-~--~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~-G~~~~~~v~---~~~~~~~ 152 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAE-AHFV-S--NKVIEVQAGDEKIELTAETIVINTGAVSNVLPIP-GLADSKHVY---DSTGIQS 152 (438)
T ss_pred HHHHHHHhCCCEEEEEE-EEEc-c--CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCC-CcCCCCcEE---chHHHhc
Confidence 22345667899999988 4444 3 44554432 24799999999999999999999 864 233 3334333
Q ss_pred hcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecC
Q psy2951 727 IAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 806 (1466)
Q Consensus 727 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 806 (1466)
+ ...+++|+|||+|++|+|+|..|++.|.+|+++++.+.++ +..++++.+.+.+.++++||++++++++++++..
T Consensus 153 ~---~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~- 227 (438)
T PRK07251 153 L---ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-PREEPSVAALAKQYMEEDGITFLLNAHTTEVKND- 227 (438)
T ss_pred c---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-CCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-
Confidence 3 2348899999999999999999999999999999998776 4468888889999999999999999999999843
Q ss_pred CCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCcee
Q psy2951 807 KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNA 884 (1466)
Q Consensus 807 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 884 (1466)
++.+ .+. .+++++++|.||+|+|++|+++. ++..++.++++|++.+|+++||+.|+|||+|||+..+...
T Consensus 228 ~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~------ 299 (438)
T PRK07251 228 GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFT------ 299 (438)
T ss_pred CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcccH------
Confidence 3222 233 45678999999999999999875 3456788888899999999999999999999998765443
Q ss_pred eeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CCcee--E--e--c----ccc
Q psy2951 885 SIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVD--I--V--G----DLE 944 (1466)
Q Consensus 885 ~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~--~--~--~----~~~ 944 (1466)
+.|..||+.++.++++.+. .+..+|.. .+++..+..+|+++. .+-.. . . + ..+
T Consensus 300 -----~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (438)
T PRK07251 300 -----YISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNND 372 (438)
T ss_pred -----hHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCC
Confidence 6899999999999987532 23345532 357777888887642 11000 0 0 0 112
Q ss_pred cceEEEEEe--cCCeEEEEEeecCc
Q psy2951 945 ALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 945 ~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
..++.|+++ ++++++|++++|..
T Consensus 373 ~~g~~kli~d~~~~~ilG~~~~g~~ 397 (438)
T PRK07251 373 LRGAFKVVVNTETKEILGATLFGEG 397 (438)
T ss_pred CcEEEEEEEECCCCEEEEEEEECCC
Confidence 355888888 46899999999975
No 75
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.5e-32 Score=333.54 Aligned_cols=347 Identities=22% Similarity=0.293 Sum_probs=251.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cch----------------hcc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSK----------------QLD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~----------------~~~-------~~ 646 (1466)
.++|++||||||||+++|..|+++|.+ |+++|+...+++.... .++ .++ .+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~--v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGAR--VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe--EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 468999999999999999999999987 7777775322211000 000 000 01
Q ss_pred ccccc-------cc-----CHhHhhhC-CcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCC
Q psy2951 647 ADSIL-------LR-----TEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADG 711 (1466)
Q Consensus 647 ~~~~~-------~~-----~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g 711 (1466)
...+. .+ ....++.. +++++.++ +..+ +.....|.+.++. ++.||+||||||++|+.|+++ |
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~-G 169 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFK-DGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIP-G 169 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEe-cCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCC-C
Confidence 11110 00 12233333 89999988 6555 6655666666653 699999999999999999999 8
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 712 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.+....+.+ .+.... ...+++++|||+|++|+|+|..|++.|.+|+++.+. ..+ +.+++++.+.+.+.|++.||
T Consensus 170 ~~~~~~~~~-~~~l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 170 LMDTPYWTS-TEALFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-FREDPLLGETLTACFEKEGI 243 (479)
T ss_pred cCccceecc-hHHhcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-CcchHHHHHHHHHHHHhCCC
Confidence 752222222 222211 124799999999999999999999999999999885 444 45789999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++++++++++++..++ . ..+.++++ ++++|.||+|+|+.|++.+ ++..|++++++|+|.||+++||+.|+|||+|
T Consensus 244 ~i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~G 320 (479)
T PRK14727 244 EVLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAG 320 (479)
T ss_pred EEEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEee
Confidence 9999999999974332 2 34455554 6999999999999999885 5677899999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CCc--eeE
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQ--VDI 939 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~--~~~ 939 (1466)
||+..+.. .+.|..||+.||.||++....+ ..+| +..++...+..+|+++. ++- ...
T Consensus 321 D~~~~~~~-----------~~~A~~~G~~aa~~i~g~~~~~~~~~~p--~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~ 387 (479)
T PRK14727 321 DCSDLPQF-----------VYVAAAAGSRAGINMTGGNATLDLSAMP--AVIFTDPQVATVGLSEAKAHLSGIETISRVL 387 (479)
T ss_pred ecCCcchh-----------hhHHHHHHHHHHHHHcCCCcccccccCC--cEEEecCceeeeeCCHHHHHHcCCceEEEEE
Confidence 99976553 3689999999999999865543 3444 33467777888888752 110 111
Q ss_pred ec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 940 VG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 940 ~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.. .-.+..|.|+++ ++++++|++++|..
T Consensus 388 ~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~ 425 (479)
T PRK14727 388 TMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHE 425 (479)
T ss_pred EcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 10 112456899888 47999999999977
No 76
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.3e-33 Score=352.25 Aligned_cols=378 Identities=21% Similarity=0.237 Sum_probs=258.2
Q ss_pred eCCCCCCCcccCCceecCCEEEccCCCc------------------------eEECCCCeeecCCCCCCCCeEEEEEEcC
Q psy2951 511 GTKCSHYGAPLVKGSLGDGRVRCPWHGA------------------------CFNIATGDIEDFPGMDSLPCYKVTIQND 566 (1466)
Q Consensus 511 ~~~C~H~~~~l~~g~~~~~~~~Cp~H~~------------------------~f~~~~G~~~~~p~~~~l~~~~v~i~~~ 566 (1466)
..+|++...|+..-...-..--||.|-- -|..-+|++|..||...++.-. .+
T Consensus 431 ~~~~~~~~~p~~~c~~aPC~~~CP~~~dIp~yi~li~~g~~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~----~d 506 (1019)
T PRK09853 431 ESRKVAEDLPLTDCYVAPCVTACPINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDHQCQYNCTRLD----YD 506 (1019)
T ss_pred ccccccccCCccCCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCC----CC
Confidence 5556666655543333333445665532 4555679999989986433221 24
Q ss_pred eEEEEEcccchhccccccc---ccccc-CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchh
Q psy2951 567 DSVVVQARKDELKNKKRKL---PMAKL-SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ 642 (1466)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 642 (1466)
..+-+...++.+.+.+... .+..+ ...+.++|+|||||||||+||+.|+++|++ |+++|+.+.+++........
T Consensus 507 ~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~--VtV~Ek~~~~GG~lr~~IP~ 584 (1019)
T PRK09853 507 EAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP--VTVFEREENAGGVVKNIIPQ 584 (1019)
T ss_pred CCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCe--EEEEecccccCcceeeeccc
Confidence 5666676777665542111 11112 235679999999999999999999999987 77888776544322111111
Q ss_pred cccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC-cEEEec-
Q psy2951 643 LDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN-KVFYLR- 719 (1466)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~-~~~~~~- 719 (1466)
+ ..+.+++.+..+++.+.|++++.++.+ .+ .+.+.....||+||||||+. +..++++ |.+ +++...
T Consensus 585 ~-Rlp~evL~~die~l~~~GVe~~~gt~V-di--------~le~L~~~gYDaVILATGA~~~~~l~Ip-G~~~gV~sald 653 (1019)
T PRK09853 585 F-RIPAELIQHDIEFVKAHGVKFEFGCSP-DL--------TVEQLKNEGYDYVVVAIGADKNGGLKLE-GGNQNVIKALP 653 (1019)
T ss_pred c-cccHHHHHHHHHHHHHcCCEEEeCcee-EE--------EhhhheeccCCEEEECcCCCCCCCCCCC-CccCCceehHH
Confidence 1 123345556667788899999999865 22 22233456799999999987 4556677 654 343221
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc-C-CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccc
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 797 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~-g-~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 797 (1466)
.+.+..........+++|+|||||++|+|+|..+.+. | .+|++++|++...++..+.+ +.+.+ ++||+++++.
T Consensus 654 fL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eE----le~Al-eeGVe~~~~~ 728 (1019)
T PRK09853 654 FLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREE----YEEAL-EDGVEFKELL 728 (1019)
T ss_pred HHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHH----HHHHH-HcCCEEEeCC
Confidence 1222222333445699999999999999999988877 4 58999999874333433333 33333 5799999999
Q ss_pred eEEEEEecC--------------CCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCC
Q psy2951 798 NVSSFEKNE--------------KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVP 863 (1466)
Q Consensus 798 ~v~~i~~~~--------------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~ 863 (1466)
.+.++..++ +++...+..+++.++++|.||+|+|++|++++++..|++++++|++.||++++|+.|
T Consensus 729 ~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~p 808 (1019)
T PRK09853 729 NPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLT 808 (1019)
T ss_pred ceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCC
Confidence 888886211 111122333445689999999999999999999888999999999999999999999
Q ss_pred CeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-cCcccCeeeeeec
Q psy2951 864 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-SLSTIPFFWTMLF 921 (1466)
Q Consensus 864 ~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~-~~~~~~~~~~~~~ 921 (1466)
+|||+|||+..+.. +..|+.||+.||.+|++... .+...|+|++..+
T Consensus 809 gVFAaGD~a~Gp~t-----------vv~Ai~qGr~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 809 NVYMIGDVQRGPST-----------IVAAIADARRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred CEEEEeccccCchH-----------HHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Confidence 99999999876543 36899999999999998654 5667777776654
No 77
>KOG0405|consensus
Probab=100.00 E-value=5.7e-33 Score=289.92 Aligned_cols=349 Identities=21% Similarity=0.293 Sum_probs=262.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC----------CCCC-------------------CCCCc---cc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE----------NFLP-------------------YDRVK---LS 640 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~----------~~~~-------------------~~~~~---~~ 640 (1466)
...+|.+|||||.+|+++|++.+..|.+ +.++|.. .|.| |.... ..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAk--v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAK--VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCce--EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 4479999999999999999999999988 5555543 1222 11100 00
Q ss_pred hhc---ccCcccccccCHh----HhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCC
Q psy2951 641 KQL---DIKADSILLRTEE----FYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADG 711 (1466)
Q Consensus 641 ~~~---~~~~~~~~~~~~~----~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g 711 (1466)
..+ ....+..+.++.. .+.+.+|+++.+. ...+ ++.+-.|...++. .+++.+++||||++|..|.|| |
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a~f~-~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIp-G 172 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-ARFV-SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIP-G 172 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee-EEEc-CCCceEEEecCCeeEEEecceEEEEeCCccCCCCCC-c
Confidence 000 0122223333333 3445689999988 6666 7777777777764 378899999999999999999 8
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 712 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.+... +.+.+.++ ...+||++|||+|++|+|+|..++.+|.+++++.|.+..+ +.||+.++..+.+.|+..||
T Consensus 173 ~E~gi---dSDgff~L---ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R~FD~~i~~~v~~~~~~~gi 245 (478)
T KOG0405|consen 173 AELGI---DSDGFFDL---EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-RGFDEMISDLVTEHLEGRGI 245 (478)
T ss_pred hhhcc---ccccccch---hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-cchhHHHHHHHHHHhhhcce
Confidence 77222 22232222 3359999999999999999999999999999999999888 78999999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++|.+++++++.+..++.. .+....+..-.+|.++||+|++|++.- ++..|++++++|.|.+|++.+||+|+||++|
T Consensus 246 nvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avG 324 (478)
T KOG0405|consen 246 NVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVG 324 (478)
T ss_pred eecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEec
Confidence 9999999999986655544 344445555569999999999999873 6889999999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC----CCcCcccCeeeeeecCce-eEEeeccCC-----CC--ce
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK----KTSLSTIPFFWTMLFGVG-FRFAGYAAG-----HT--QV 937 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~----~~~~~~~~~~~~~~~~~~-~~~~g~~~~-----~~--~~ 937 (1466)
|++..-. +.+.|+.+|+..|+.+++. +..|..+| +.+|..+ +..+|+++. +. ++
T Consensus 325 Dv~gk~~-----------LTPVAiaagr~la~rlF~~~~~~kldY~nVp---~vVFshP~igtVGLtE~EAiekyg~~~i 390 (478)
T KOG0405|consen 325 DVTGKIN-----------LTPVAIAAGRKLANRLFGGGKDTKLDYENVP---CVVFSHPPIGTVGLTEEEAIEKYGKGDI 390 (478)
T ss_pred cccCcEe-----------cchHHHhhhhhHHHHhhcCCCCCccccccCc---eEEEecCCcccccCCHHHHHHHhCccce
Confidence 9987644 3378999999999999973 23577888 4455543 555666542 11 11
Q ss_pred --eEe---------cccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 938 --DIV---------GDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 938 --~~~---------~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
+.+ ...++..++|++| ++++++|++++|.+.
T Consensus 391 ~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s 434 (478)
T KOG0405|consen 391 KVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDS 434 (478)
T ss_pred EEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCc
Confidence 111 1234667899999 789999999999985
No 78
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=5.6e-32 Score=332.07 Aligned_cols=379 Identities=25% Similarity=0.340 Sum_probs=264.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------cccCc-------ccc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDIKA-------DSI 98 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~~~-------~~~ 98 (1466)
++||+||||||||++||..|++.|.++.|++...-....... +..++. +.... ..+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 389999999999999999999999998887752111000000 000100 01100 000
Q ss_pred -----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCC-cEEecCEEEEccCCCCCCCCCCCCCCcEEEe
Q psy2951 99 -----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVFYL 166 (1466)
Q Consensus 99 -----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~ 166 (1466)
......++++.+++++.++.... +.....+...++ .++.||+||+|||++|+.++..-+.... .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~-~~ 157 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFL--DPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGE-VV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCc-eE
Confidence 01112345567899999886643 333344444343 4799999999999999866532022221 22
Q ss_pred cCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246 (1466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 246 (1466)
.+..+...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++++++
T Consensus 158 ~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~gi~i~~~~~ 233 (461)
T TIGR01350 158 ITSTGALNLKE---VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGVKILTNTK 233 (461)
T ss_pred EcchHHhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-CCCCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 34455544332 35799999999999999999999999999999988766 467889999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEcCCC--cEEeccEEEEeeccccCcc--ccccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 247 VSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 247 v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a~G~~p~~~--~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
+.+++.++ +.+. +.+.+| +++++|.||+|+|++|++. +++..+++++.+|++.||++++|+.|+|||+|||+..
T Consensus 234 v~~i~~~~-~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~ 311 (461)
T TIGR01350 234 VTAVEKND-DQVV-YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGG 311 (461)
T ss_pred EEEEEEeC-CEEE-EEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCC
Confidence 99997653 2333 444556 5799999999999999998 5788889999989999999999999999999999864
Q ss_pred cCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeecC------Cc----eEEEe-
Q psy2951 323 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAG------HT----QVDIV- 388 (1466)
Q Consensus 323 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~~------~~----~~~~~- 388 (1466)
+ ..+..|+.||+.+|.|+.+... ++..+|+.. ..+..+..+|.... .+ ...+.
T Consensus 312 ~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~--~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~ 378 (461)
T TIGR01350 312 P-----------MLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCI--YTDPEVASVGLTEEQAKEAGYDVKIGKFPFAA 378 (461)
T ss_pred c-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEE--ecCCceEEEeCCHHHHHhCCCCeEEEEEeCcc
Confidence 3 3467899999999999997543 233444321 11122333333211 00 00100
Q ss_pred -----cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 -----GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 -----g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
-..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. +++.||+++|.+
T Consensus 379 ~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~P~~~e~~ 447 (461)
T TIGR01350 379 NGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAV-LAMELELTVEELAKTIHPHPTLSEAI 447 (461)
T ss_pred chHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCcccCCCHHHHH
Confidence 01235789988886 489999999998 44555555 899988876 788999999987
No 79
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.1e-32 Score=332.30 Aligned_cols=351 Identities=20% Similarity=0.268 Sum_probs=249.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC----ccchh----------------cc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQ----------------LD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~----~~~~~----------------~~-------~~ 646 (1466)
..+||+||||||||++||..|+++|++ |+++|+.. +++... ..++. ++ .+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~--v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLK--TALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCe--EEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 468999999999999999999999998 77777752 221110 00000 00 01
Q ss_pred cccc-------cc----cCHhHhhhCCcEEEEceEEEEecccc-------ccEEEccCC--CEEecCEEEEcCCCCCCcC
Q psy2951 647 ADSI-------LL----RTEEFYKDNDIHVIKGKKIISDSELN-------EKKIKLQDG--TSIDFTKIYLATGSSPRTI 706 (1466)
Q Consensus 647 ~~~~-------~~----~~~~~~~~~gv~~~~~~~v~~i~~~~-------~~~v~~~~~--~~~~~d~lviAtG~~~~~~ 706 (1466)
...+ .. .....+++.+++++.++ +..+ +.. ...+.+.++ .++.||+||||||++|..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i-~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRIL-GPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-CCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 1111 11 11234566799999998 7777 766 566766666 5799999999999999765
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 707 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 707 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
+.. ..++.+.+ +..++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.|
T Consensus 158 p~~-~~~~~~~~-~~~~~~~~~---~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-~~~~~~~~~~l~~~l 231 (472)
T PRK05976 158 PGL-PFDGEYVI-SSDEALSLE---TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-PTEDAELSKEVARLL 231 (472)
T ss_pred CCC-CCCCceEE-cchHhhCcc---ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-CcCCHHHHHHHHHHH
Confidence 433 23332222 344444332 237999999999999999999999999999999998776 567899999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCC
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNV 862 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~ 862 (1466)
+++||++++++++++++...++.+..+.+.+| +++++|.||+|+|.+|+++.+ +..++.. .+|++.||++++|+.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~ts~ 310 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKE 310 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCcccCC
Confidence 99999999999999997422333444445566 379999999999999998753 4556655 468999999999999
Q ss_pred CCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC-CcCcccCeeeeeecCceeEEeeccCC------CC
Q psy2951 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSLSTIPFFWTMLFGVGFRFAGYAAG------HT 935 (1466)
Q Consensus 863 ~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~------~~ 935 (1466)
|+|||+|||+..+. .++.|..||+.+|.+|++.. ..++.....+..+++..+..+|+++. .+
T Consensus 311 ~~IyAiGD~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~ 379 (472)
T PRK05976 311 RHIYAIGDVIGEPQ-----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYD 379 (472)
T ss_pred CCEEEeeecCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCC
Confidence 99999999986443 34789999999999999865 33332222233356777777777642 11
Q ss_pred --ceeEec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 --QVDIVG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 --~~~~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.....- ..++..|+|+++ ++++++|++++|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 423 (472)
T PRK05976 380 VKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPH 423 (472)
T ss_pred EEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 000100 112466889888 46899999999976
No 80
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.3e-32 Score=328.17 Aligned_cols=347 Identities=23% Similarity=0.292 Sum_probs=243.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccchh------------------ccc------C
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ------------------LDI------K 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~~------------------~~~------~ 646 (1466)
.+||+||||||||++||..++++|++ |+++|+...+++.- +..++. ++. +
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~--V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLK--VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe--EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 48999999999999999999999998 78888633222211 000000 000 0
Q ss_pred ccccc-----------ccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
...+. ......+++.+|+++.++ .... +.....+...++. +++||+||||||++|.. +| |.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~--ip-g~~ 155 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-GRLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEPTP--LP-GVT 155 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC--CC-CCC
Confidence 11111 111223455689999887 4333 4444445555553 69999999999999853 44 543
Q ss_pred --cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 714 --KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 714 --~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
+...+ +..++..+ ...+++++|||+|++|+|+|..+++.|.+||++++.++++ +.+++++.+.+.+.|++.||
T Consensus 156 ~~~~~~~-~~~~~~~~---~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-~~~d~~~~~~l~~~l~~~gV 230 (466)
T PRK06115 156 IDNQRII-DSTGALSL---PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDTETAKTLQKALTKQGM 230 (466)
T ss_pred CCCCeEE-CHHHHhCC---ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCCHHHHHHHHHHHHhcCC
Confidence 33333 33444332 2358999999999999999999999999999999998877 46889999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEEC---CCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeE
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 866 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iy 866 (1466)
++++++++++++..+++....+.. .+++++++|.|++++|++|++++ ++..++.++++| +.+|++++|+.|+||
T Consensus 231 ~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~Iy 309 (466)
T PRK06115 231 KFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVW 309 (466)
T ss_pred EEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEE
Confidence 999999999998433322122221 22457999999999999999885 466788888777 678999999999999
Q ss_pred EeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC--cCcccCeeeeeecCceeEEeeccCC------CCcee
Q psy2951 867 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVD 938 (1466)
Q Consensus 867 a~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~ 938 (1466)
|+|||+..+. +++.|.+||+++|+||++... .++.+|.+. +....+..+|+++. .+-..
T Consensus 310 A~GD~~~~~~-----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~t~p~ia~vGlte~~a~~~g~~~~~ 376 (466)
T PRK06115 310 VIGDVTSGPM-----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVI--YTRPEVATVGKTEEQLKAEGRAYKV 376 (466)
T ss_pred EeeecCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCcccEEeeCCHHHHHHCCCCEEE
Confidence 9999987543 457999999999999998643 234566432 23455677777642 11000
Q ss_pred Ee----c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 939 IV----G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 939 ~~----~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.. . ..+...|+|+++ ++++++|++++|..
T Consensus 377 ~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 417 (466)
T PRK06115 377 GKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPS 417 (466)
T ss_pred EEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 00 0 112457899988 46899999999975
No 81
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=8.4e-33 Score=328.80 Aligned_cols=291 Identities=19% Similarity=0.270 Sum_probs=237.4
Q ss_pred cEEEECCchHHHHHHHHHHhc-CCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQN-GFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~-g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
+|||||||+||+.+|.+|+++ ....+|+|||++++.+|.+. ++.... ...+++.....+++++.+++++.+. |+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~-v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAE-ATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEE-EEE
Confidence 589999999999999999765 44569999999999888753 333322 2344555555667778899998874 999
Q ss_pred eecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHh----hhccc---CCCCeEEEEcCCHH
Q psy2951 1145 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANN----IAPHI---TPESNVVVIGSSFI 1216 (1466)
Q Consensus 1145 i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~----l~~~~---~~~~~vvVvG~g~~ 1216 (1466)
| |++++.|.+++|+++.||+||||||++|+.+++| |.. +++.+++++++.+ +.+.. ..+++++|||+|++
T Consensus 79 i-d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 79 I-DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE-GAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAA 156 (364)
T ss_pred E-ecccCEEEECCCCcccccEEEEccCCCCCCCCCC-cccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence 9 9999999999999999999999999999999999 855 7788888888776 33332 24679999999999
Q ss_pred HHHHHHHHhc----CC--CeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC
Q psy2951 1217 GMEAAAFCAS----KV--KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 1290 (1466)
Q Consensus 1217 g~e~a~~l~~----~g--~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~ 1290 (1466)
|+|+|..|++ +| .+|+++ +.+.++. .+++++...+.+.++++||++++++.+++++ ++ .+.+.+|+
T Consensus 157 g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~----~v~~~~g~ 228 (364)
T TIGR03169 157 GVEIALALRRRLPKRGLRGQVTLI-AGASLLP-GFPAKVRRLVLRLLARRGIEVHEGAPVTRGP--DG----ALILADGR 228 (364)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE-eCCcccc-cCCHHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC----eEEeCCCC
Confidence 9999998875 34 589999 5555554 5778889999999999999999999999986 22 37788999
Q ss_pred eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc-cCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHH
Q psy2951 1291 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 1369 (1466)
Q Consensus 1291 ~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t-~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~ 1369 (1466)
++++|.|++++|..|+ .++...++.++.+|++.||++++| ++|+|||+|||+..+.... ..+...|..||++
T Consensus 229 ~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~------~~~~~~A~~~g~~ 301 (364)
T TIGR03169 229 TLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR------PKAGVYAVRQAPI 301 (364)
T ss_pred EEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC------CCchHHHHHhHHH
Confidence 9999999999999998 466677888888899999999998 8999999999998754211 1234679999999
Q ss_pred HHHHhcCC
Q psy2951 1370 AALNMVEK 1377 (1466)
Q Consensus 1370 aa~~i~g~ 1377 (1466)
+|+||+..
T Consensus 302 ~a~ni~~~ 309 (364)
T TIGR03169 302 LAANLRAS 309 (364)
T ss_pred HHHHHHHH
Confidence 99999853
No 82
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-31 Score=327.86 Aligned_cols=344 Identities=24% Similarity=0.331 Sum_probs=243.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCCCc----cchh-------cccC------cc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDRVK----LSKQ-------LDIK------AD 648 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~~~----~~~~-------~~~~------~~ 648 (1466)
.+||+||||||||++||..|+++|.+ |+++|++. +.|..... +... ++.. ..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~--V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLK--TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe--EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 48999999999999999999999988 77777752 11110000 0000 0000 00
Q ss_pred ccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCCCCCC--
Q psy2951 649 SILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN-- 713 (1466)
Q Consensus 649 ~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~g~~-- 713 (1466)
.+..+ ....++..+|+.+.++ ...+ +.....+...++ .+++||+||||||++|+.| | |.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--p-g~~~~ 156 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTFT-DANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--P-GTSLS 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--C-CCCCC
Confidence 00000 0112234578887765 4444 444444544444 3799999999999999865 3 433
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
.++ +..+.... ...+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++...+.+.|+++||+
T Consensus 157 ~~v~---~~~~~~~~---~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gV~ 229 (466)
T PRK07818 157 ENVV---TYEEQILS---RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-PNEDAEVSKEIAKQYKKLGVK 229 (466)
T ss_pred CcEE---chHHHhcc---ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-CccCHHHHHHHHHHHHHCCCE
Confidence 233 22322111 1247999999999999999999999999999999998877 457899999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEEC--CCC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeE
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 866 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iy 866 (1466)
+++++++++++.. ++.+ .+.+ .+| +++++|.||+|+|++|++++ ++..|++++++|+|.+|+++||+.|+||
T Consensus 230 i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~Iy 307 (466)
T PRK07818 230 ILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIY 307 (466)
T ss_pred EEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEE
Confidence 9999999999843 2222 3333 255 47999999999999999885 5788999988899999999999999999
Q ss_pred EeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CC-
Q psy2951 867 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HT- 935 (1466)
Q Consensus 867 a~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~- 935 (1466)
|+|||+..+. .++.|..||++||.||++... .+..+|.. .++++.+..+|+++. ++
T Consensus 308 AiGD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~~~g~~~ 374 (466)
T PRK07818 308 AIGDVTAKLQ-----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPRA--TFCQPQVASFGLTEEQAREEGYDV 374 (466)
T ss_pred EEeecCCCcc-----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE--EECCCCeEEEeCCHHHHHhCCCcE
Confidence 9999986432 457899999999999998642 23445532 245677888887652 11
Q ss_pred -ceeEe--c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 -QVDIV--G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 -~~~~~--~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
..... . ..+...|.|+++ ++++++|++++|..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~ 417 (466)
T PRK07818 375 KVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPD 417 (466)
T ss_pred EEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCC
Confidence 01110 0 112467899988 46899999999975
No 83
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=8.7e-32 Score=326.62 Aligned_cols=347 Identities=18% Similarity=0.259 Sum_probs=247.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC--------CCCCCC----Cccch----------------hcccC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLPYDR----VKLSK----------------QLDIK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~--------~~~~~~----~~~~~----------------~~~~~ 646 (1466)
.+|++||||||||+.||..+++.|.+ |.++|+.. .+++.- +..++ .++..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~--v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK--VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 47999999999999999999999998 77777521 111100 00000 00111
Q ss_pred --------cccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCc
Q psy2951 647 --------ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 647 --------~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~ 705 (1466)
...+ .......++..||+++.+. ...+ +.....+...++ .+++||+||||||++|+.
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~f~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ 157 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AEFV-DKHRIKATNKKGKEKIYSAERFLIATGERPRY 157 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc-CCCEEEEeccCCCceEEEeCEEEEecCCCCCC
Confidence 0000 1112234667799999998 6666 555444433333 379999999999999999
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHH
Q psy2951 706 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 785 (1466)
Q Consensus 706 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~ 785 (1466)
|++| |.+.. ..+.++...+. ..+++++|||+|++|+|+|..|+++|.+||++.+. .++ +.+++++.+.+.+.
T Consensus 158 p~ip-G~~~~--~~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~ 229 (484)
T TIGR01438 158 PGIP-GAKEL--CITSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDCANKVGEH 229 (484)
T ss_pred CCCC-Cccce--eecHHHhhccc---ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-cccCHHHHHHHHHH
Confidence 9999 86422 12344443332 24789999999999999999999999999999974 444 67899999999999
Q ss_pred HHhcCcEEEccceEEEEEecCCCceEEEECCCC---cEEecCEEEEccccccCccc--cccCCceeeC-CCcEEeCCCCC
Q psy2951 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLE 859 (1466)
Q Consensus 786 l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~-~G~i~vd~~~~ 859 (1466)
|+++||+++++..+.+++..+ +. ..+.+.++ +++++|.|++|+|++||+++ ++..|+++++ +|+|.||+++|
T Consensus 230 L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~ 307 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ 307 (484)
T ss_pred HHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc
Confidence 999999999999999987432 22 34555554 47999999999999999986 5688898875 48999999999
Q ss_pred CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC---CcCcccCeeeeeecCceeEEeeccCCC--
Q psy2951 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPFFWTMLFGVGFRFAGYAAGH-- 934 (1466)
Q Consensus 860 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 934 (1466)
|+.|+|||+|||+.... ..++.|.+||+.+|+||++.. ..++.+|.. .++.+.+..+|+++..
T Consensus 308 Ts~p~IyA~GDv~~~~~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~--i~~~p~ia~vGlte~~a~ 375 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQ----------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTT--VFTPLEYGACGLSEEKAV 375 (484)
T ss_pred cCCCCEEEEEEecCCCc----------cchHHHHHHHHHHHHHHhcCCCcccccccCCeE--EeCCCceeeecCCHHHHH
Confidence 99999999999986321 134789999999999999743 235556643 3455667788876521
Q ss_pred -----CceeEe-cc------------cccceEEEEEe-c--CCeEEEEEeecCc
Q psy2951 935 -----TQVDIV-GD------------LEALKFTAYYS-N--ADKVLAILTVGMD 967 (1466)
Q Consensus 935 -----~~~~~~-~~------------~~~~~~~~~~~-~--~~~i~g~~~~g~~ 967 (1466)
...... .. .....|.|+++ + +++++|++++|.+
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~ 429 (484)
T TIGR01438 376 EKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPN 429 (484)
T ss_pred HhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCC
Confidence 111100 00 01346888876 2 5899999999976
No 84
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.9e-31 Score=324.63 Aligned_cols=344 Identities=22% Similarity=0.329 Sum_probs=248.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC---CCCccch----------------hcc---------cCcc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY---DRVKLSK----------------QLD---------IKAD 648 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~---~~~~~~~----------------~~~---------~~~~ 648 (1466)
+|+||||||||++||..|++.|.+ |+++|++...+- .-+..++ .++ .+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~--V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN--VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc--EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 899999999999999999999988 888887642110 0000000 001 1111
Q ss_pred ccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 649 SILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 649 ~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
.+..+ ....+++.+++++.++ +..+ +.....+..+++ .+++||+||||||++|+.|+++ +.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~-~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~-~~~~~~ 156 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE-TDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFA-PFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc-cCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCC-CCCCCe
Confidence 11111 1223456699999998 6666 665556655455 3799999999999999988877 655322
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
.+ +..++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||+++++
T Consensus 157 v~-~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-~~~d~e~~~~l~~~L~~~GI~i~~~ 231 (458)
T PRK06912 157 II-NSKHAMSLP---SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-PGEDEDIAHILREKLENDGVKIFTG 231 (458)
T ss_pred EE-cchHHhCcc---ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-ccccHHHHHHHHHHHHHCCCEEEEC
Confidence 22 334443332 347899999999999999999999999999999998776 4578899999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEecccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~ 872 (1466)
+++++++.. +. ...+.. ++ .++++|.|++|+|++|++++ ++..|+.++++| +.||+++||+.|+|||+|||+
T Consensus 232 ~~V~~i~~~-~~-~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~ 307 (458)
T PRK06912 232 AALKGLNSY-KK-QALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVI 307 (458)
T ss_pred CEEEEEEEc-CC-EEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecC
Confidence 999999843 22 222332 33 37999999999999999875 467788888776 999999999999999999998
Q ss_pred ccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc--CcccCeeeeeecCceeEEeeccCCCC-----ceeEe-----
Q psy2951 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGHT-----QVDIV----- 940 (1466)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~----- 940 (1466)
..+. .++.|..||++||.+|++.... +..+|... +++..+..+|+++... +....
T Consensus 308 ~~~~-----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~ 374 (458)
T PRK06912 308 GGIQ-----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQAREQYGDIRIGEFPFT 374 (458)
T ss_pred CCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHHHHHCCCCeEEEEEecC
Confidence 6443 4578999999999999986543 34566322 4456677788765211 11100
Q ss_pred c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 ~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. ...+..|.|+++ ++++++|+++++.+
T Consensus 375 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 409 (458)
T PRK06912 375 ANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPR 409 (458)
T ss_pred cchhHhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 0 112456899988 46899999999976
No 85
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=4.6e-31 Score=319.40 Aligned_cols=344 Identities=21% Similarity=0.325 Sum_probs=248.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCC----------------Cccc-hhcccCcc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDR----------------VKLS-KQLDIKAD 648 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~----------------~~~~-~~~~~~~~ 648 (1466)
++|++|||+||||..||. +.+|.+ |.++|++. |.|-.. ..+. .....+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~--V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKR--IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCe--EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 589999999999999864 446887 77787752 222110 0000 00000111
Q ss_pred ccccc-----------C-HhHh---hhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 649 SILLR-----------T-EEFY---KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 649 ~~~~~-----------~-~~~~---~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
.+..+ . .... ++.||+++.++. ... +.++|.+.++.+++||+||||||++|..|++. +.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~-~~~ 152 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHA-RFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAI-ADS 152 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEE-EEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCCC-CCC
Confidence 11111 1 1111 236999999983 333 45677777788899999999999999988755 333
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
+.. +.+.+++..+.+ .+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+ +.||++
T Consensus 153 ~~~-~~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~~~-~~gI~i 226 (452)
T TIGR03452 153 GVR-YHTNEDIMRLPE---LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-RHLDEDISDRFTEIA-KKKWDI 226 (452)
T ss_pred CCE-EEcHHHHHhhhh---cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-cccCHHHHHHHHHHH-hcCCEE
Confidence 332 346666665543 37999999999999999999999999999999998765 467888888887655 568999
Q ss_pred EccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++.++++++..+ +. ..+.+.+|+++++|.|++++|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 227 ~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 304 (452)
T TIGR03452 227 RLGRNVTAVEQDG-DG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDV 304 (452)
T ss_pred EeCCEEEEEEEcC-Ce-EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecc
Confidence 9999999998433 23 3466677889999999999999999987 466799999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CCceeEe-
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVDIV- 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~- 940 (1466)
+..+.. .+.|.+||+++|+||++... .+..+|.. .++.+.+.++|+++. ++-....
T Consensus 305 ~~~~~l-----------~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~--i~t~p~ia~vGlte~ea~~~g~~~~~~~~ 371 (452)
T TIGR03452 305 SSPYQL-----------KHVANAEARVVKHNLLHPNDLRKMPHDFVPSA--VFTHPQIATVGLTEQEAREAGHDITVKIQ 371 (452)
T ss_pred cCcccC-----------hhHHHHHHHHHHHHhcCCCCcccCCCCCCCeE--EECCCCeeeeeCCHHHHHhcCCCeEEEEe
Confidence 876533 36899999999999997532 23456633 245667788887652 1100000
Q ss_pred ---------cccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 941 ---------GDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 941 ---------~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
...+...|+|+++ ++++++|++++|.+.
T Consensus 372 ~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a 410 (452)
T TIGR03452 372 NYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQA 410 (452)
T ss_pred cCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCH
Confidence 0123467899988 579999999999863
No 86
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.1e-31 Score=324.42 Aligned_cols=348 Identities=26% Similarity=0.378 Sum_probs=251.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc----ch----------------hcccC-------c
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL----SK----------------QLDIK-------A 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~----~~----------------~~~~~-------~ 647 (1466)
++||+||||||||++||..|+++|.+ |+++|+ +.+++..... ++ .++.. .
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~--v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK--VALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe--EEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 37999999999999999999999987 778887 3333211000 00 00000 0
Q ss_pred ccccc-----------cCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCCcE
Q psy2951 648 DSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKV 715 (1466)
Q Consensus 648 ~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~~~ 715 (1466)
..+.. .....+++.+++++.++ +..+ +.....+...++ .+++||+||||||++|+.|+++-+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~ 155 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFL-DPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGE 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCc
Confidence 01111 11224456789999988 5555 655555555444 4799999999999999887763022322
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEc
Q psy2951 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795 (1466)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 795 (1466)
...+..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.++++||++++
T Consensus 156 -~~~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~gi~i~~ 230 (461)
T TIGR01350 156 -VVITSTGALNLK---EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGVKILT 230 (461)
T ss_pred -eEEcchHHhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-CCCCHHHHHHHHHHHHHcCCEEEe
Confidence 223445544332 247899999999999999999999999999999998776 468889999999999999999999
Q ss_pred cceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCcc--ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 796 KANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 796 ~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
++++.+++.. ++.+ .+.+.+| +++++|.||+|+|.+|++. +++..++.++++|++.+|+++||+.|+|||+|||
T Consensus 231 ~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~ 308 (461)
T TIGR01350 231 NTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDV 308 (461)
T ss_pred CCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeec
Confidence 9999999743 3333 3555566 5799999999999999988 5788899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-cC--cccCeeeeeecCceeEEeeccCC------CC--ceeEe
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-SL--STIPFFWTMLFGVGFRFAGYAAG------HT--QVDIV 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~-~~--~~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~ 940 (1466)
+..+. .+..|..||+.+|.+|.+... .+ ..+|. ..+++..+..+|+++. .+ .....
T Consensus 309 ~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~ 375 (461)
T TIGR01350 309 IGGPM-----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPS--CIYTDPEVASVGLTEEQAKEAGYDVKIGKFP 375 (461)
T ss_pred CCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCe--EEecCCceEEEeCCHHHHHhCCCCeEEEEEe
Confidence 87543 357899999999999997644 32 33443 2245666777776542 11 00000
Q ss_pred --c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 --G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 --~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. ..++..|.|+++ ++++++|+++++.+
T Consensus 376 ~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~ 412 (461)
T TIGR01350 376 FAANGKALALGETDGFVKIIADKKTGEILGAHIIGPH 412 (461)
T ss_pred CccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 0 112466889888 46899999999976
No 87
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=4.9e-32 Score=322.25 Aligned_cols=292 Identities=18% Similarity=0.270 Sum_probs=236.0
Q ss_pred eEEEEcCchHHHHHHHHHHHc-CCCccEEEEcCCCCCCCCCCccchhc-c-cCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 597 TFIVVGGGPSGATCVETLRQN-GFTGKLYFITDENFLPYDRVKLSKQL-D-IKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~-g~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
+|||||||+||+.+|..|+++ ..+.+|+++++++++.|... +.... + ...+++.....+++++.+++++.++ |..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~-v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAE-ATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEE-EEE
Confidence 589999999999999999765 45677999999988877654 22222 1 3455666677778888899999886 999
Q ss_pred eccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHh----hcccC---CCCCcEEEECCChH
Q psy2951 674 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANN----IAPHI---TPESNVVVIGSSFI 745 (1466)
Q Consensus 674 i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~----~~~~~---~~~~~vvVvG~G~~ 745 (1466)
+ |.+++.|.++++++++||+||||||+++..|++| |.. +++.+++.+++.. +.+.. ..+++++|||+|++
T Consensus 79 i-d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 79 I-DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE-GAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAA 156 (364)
T ss_pred E-ecccCEEEECCCCcccccEEEEccCCCCCCCCCC-cccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence 9 9888999999998999999999999999999999 744 6677777766554 22222 23679999999999
Q ss_pred HHHHHHHHhc----cC--CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc
Q psy2951 746 GMEAAAFCAS----KV--KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 819 (1466)
Q Consensus 746 g~e~A~~l~~----~g--~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~ 819 (1466)
|+|+|..|++ .| .+|+++ +.+.++ +.+++++...+.+.|+++||++++++++++++.+ .+.+++|+
T Consensus 157 g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g~ 228 (364)
T TIGR03169 157 GVEIALALRRRLPKRGLRGQVTLI-AGASLL-PGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADGR 228 (364)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE-eCCccc-ccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCCC
Confidence 9999998875 34 589999 555544 4578888999999999999999999999998722 46677889
Q ss_pred EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCC-CCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHH
Q psy2951 820 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898 (1466)
Q Consensus 820 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~ 898 (1466)
++++|.+|+|+|.+|++ ++...++.++++|++.+|+++|| ++|+|||+|||+..+... .++.+..|+.||+.
T Consensus 229 ~i~~D~vi~a~G~~p~~-~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~------~~~~~~~A~~~g~~ 301 (364)
T TIGR03169 229 TLPADAILWATGARAPP-WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP------RPKAGVYAVRQAPI 301 (364)
T ss_pred EEecCEEEEccCCChhh-HHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC------CCCchHHHHHhHHH
Confidence 99999999999999984 55667888888899999999998 999999999999765321 12356789999999
Q ss_pred HHHHhccCC
Q psy2951 899 AALNMVEKK 907 (1466)
Q Consensus 899 aA~~i~~~~ 907 (1466)
+|+||....
T Consensus 302 ~a~ni~~~l 310 (364)
T TIGR03169 302 LAANLRASL 310 (364)
T ss_pred HHHHHHHHh
Confidence 999997543
No 88
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-32 Score=331.06 Aligned_cols=337 Identities=19% Similarity=0.245 Sum_probs=239.5
Q ss_pred ceEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhcccccccc--ccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 538 ACFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLP--MAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 538 ~~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
.-|..-.|++|.. ||...+..-. .+..+.+...++.+.++..... +..+.+.+.++|+|||||||||+||+.
T Consensus 83 np~p~~~grvC~~~~~Ce~~C~r~~----~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 83 NALPAVCGRVCPQESQCEGKCVLGI----KGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred CCchhhhhccCCCCCChHHHhcCCC----CCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 3455566888876 8876422221 2556777777777766542221 223345678999999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCC-ccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEe
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSID 691 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~ 691 (1466)
|+++|++ |+++|+.+.+++... .+. .+....+++..+..+++++.|+++++++.+.. .+.+++. ..+.
T Consensus 159 l~~~G~~--V~v~e~~~~~GG~l~~gip-~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-------~v~~~~~~~~~~ 228 (464)
T PRK12831 159 LAKMGYD--VTIFEALHEPGGVLVYGIP-EFRLPKETVVKKEIENIKKLGVKIETNVVVGK-------TVTIDELLEEEG 228 (464)
T ss_pred HHhCCCe--EEEEecCCCCCCeeeecCC-CccCCccHHHHHHHHHHHHcCCEEEcCCEECC-------cCCHHHHHhccC
Confidence 9999998 777777654332111 111 11122233556666778889999999995521 2223222 3457
Q ss_pred cCEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhc--------ccCCCCCcEEEECCChHHHHHHHHHhccCCeE
Q psy2951 692 FTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIA--------PHITPESNVVVIGSSFIGMEAAAFCASKVKSV 760 (1466)
Q Consensus 692 ~d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~--------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V 760 (1466)
||+||||||+ .|+.+++| |.+ +++...++.....+. .....+++|+|||+|++|+|+|..+.++|.+|
T Consensus 229 ~d~viiAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~V 307 (464)
T PRK12831 229 FDAVFIGSGAGLPKFMGIP-GENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEV 307 (464)
T ss_pred CCEEEEeCCCCCCCCCCCC-CcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEE
Confidence 9999999998 69999999 876 666555544432221 12346899999999999999999999999999
Q ss_pred EEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC------------------CCc--E
Q psy2951 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD------------------NGT--T 820 (1466)
Q Consensus 761 ~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~------------------~g~--~ 820 (1466)
++++|.+...++....+ + +.+.+.||+++++..+.++..++++++..+.+. +|+ +
T Consensus 308 tlv~r~~~~~m~a~~~e----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~ 382 (464)
T PRK12831 308 HIVYRRSEEELPARVEE----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFV 382 (464)
T ss_pred EEEeecCcccCCCCHHH----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEE
Confidence 99998764222221111 1 345678999999999999975455555444331 222 6
Q ss_pred EecCEEEEccccccCcccccc-CCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~ 898 (1466)
+++|+||+|+|+.|++.++.. .|++++++|+|.+|++ ++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 383 i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~-----------~v~~Ai~~G~~ 451 (464)
T PRK12831 383 LEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA-----------TVILAMGAGKK 451 (464)
T ss_pred EECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch-----------HHHHHHHHHHH
Confidence 999999999999999988876 7899998999999987 9999999999999987543 34789999999
Q ss_pred HHHHhcc
Q psy2951 899 AALNMVE 905 (1466)
Q Consensus 899 aA~~i~~ 905 (1466)
||.+|..
T Consensus 452 AA~~I~~ 458 (464)
T PRK12831 452 AAKAIDE 458 (464)
T ss_pred HHHHHHH
Confidence 9999853
No 89
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-31 Score=324.56 Aligned_cols=281 Identities=19% Similarity=0.231 Sum_probs=207.6
Q ss_pred CcEEEEceEEEEeccccccEEEc-cCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEE
Q psy2951 662 DIHVIKGKKIISDSELNEKKIKL-QDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVV 738 (1466)
Q Consensus 662 gv~~~~~~~v~~i~~~~~~~v~~-~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vv 738 (1466)
+++++.+. ...+ +.. ++.+ .+++++.||+||||||++|..|+++ +.+ .++ +.+++..+.. .+++|+
T Consensus 248 ~v~vi~G~-a~f~-~~~--~v~v~~~g~~i~ad~lIIATGS~P~~P~~~-~~~~~~V~---ts~d~~~l~~---lpk~Vv 316 (659)
T PTZ00153 248 HVQVIYER-GHIV-DKN--TIKSEKSGKEFKVKNIIIATGSTPNIPDNI-EVDQKSVF---TSDTAVKLEG---LQNYMG 316 (659)
T ss_pred ceEEEEeE-EEEe-cCC--eEEEccCCEEEECCEEEEcCCCCCCCCCCC-CCCCCcEE---ehHHhhhhhh---cCCceE
Confidence 37888877 4343 433 3333 3567899999999999999988866 554 344 4455544432 378999
Q ss_pred EECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH-HhcCcEEEccceEEEEEecCCCceEEEECC-
Q psy2951 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLD- 816 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~- 816 (1466)
|||+|++|+|+|..|+++|.+||++++.++++ +.+++++.+.+.+.+ +++||++++++.+++++..+++....+.+.
T Consensus 317 IVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~ 395 (659)
T PTZ00153 317 IVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-PLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE 395 (659)
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEeccCccc-ccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec
Confidence 99999999999999999999999999999877 468999999888875 679999999999999985433222233322
Q ss_pred ------CC--------cEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCC------CCCeEEecccccc
Q psy2951 817 ------NG--------TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETN------VPGVYAGGDIAYA 874 (1466)
Q Consensus 817 ------~g--------~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~------~~~iya~GD~~~~ 874 (1466)
++ +++++|.|++|+|++||++++ +..++++++ |+|.||++|||+ +|+|||+|||+..
T Consensus 396 ~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~ 474 (659)
T PTZ00153 396 RQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGK 474 (659)
T ss_pred cccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCC
Confidence 11 379999999999999999864 677888764 899999999997 6999999999865
Q ss_pred CCcccCCceeeeccHHHHHHHHHHHHHHhccCC-------------C--cCcccCeeeeeecCceeEEeeccCCCC----
Q psy2951 875 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-------------T--SLSTIPFFWTMLFGVGFRFAGYAAGHT---- 935 (1466)
Q Consensus 875 ~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-------------~--~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 935 (1466)
+. .++.|.+||+.+|++|++.. . .+..+|. ..++.+.+.++|+++...
T Consensus 475 ~~-----------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g 541 (659)
T PTZ00153 475 QM-----------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELY 541 (659)
T ss_pred cc-----------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCE--EEECcCceEEeeCCHHHHHhcC
Confidence 43 45799999999999999862 1 1334442 235566678888765210
Q ss_pred ---ce-----eEec--------c--------------------cccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 936 ---QV-----DIVG--------D--------------------LEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 ---~~-----~~~~--------~--------------------~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
+. .... + .++..|+|+++ ++++++|++++|...
T Consensus 542 ~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A 612 (659)
T PTZ00153 542 PPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYA 612 (659)
T ss_pred CCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 00 0000 0 01467899988 578999999999984
No 90
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-30 Score=319.18 Aligned_cols=348 Identities=24% Similarity=0.342 Sum_probs=247.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC------CCCCCCCC----Cccch-----------------hcccC-
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD------ENFLPYDR----VKLSK-----------------QLDIK- 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~------~~~~~~~~----~~~~~-----------------~~~~~- 646 (1466)
.+|++||||||||++||.++++.|.+ |+++|+ ...+++.. +..++ .++..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~--v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLK--VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCe--EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 58999999999999999999999988 777776 11111100 00000 00000
Q ss_pred ------cccccc-----------cCHhHhhhCCcEEEEceEEEEecc--ccccEEEcc--CCCEEecCEEEEcCCCCCCc
Q psy2951 647 ------ADSILL-----------RTEEFYKDNDIHVIKGKKIISDSE--LNEKKIKLQ--DGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 647 ------~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~--~~~~~v~~~--~~~~~~~d~lviAtG~~~~~ 705 (1466)
...+.. .....++..+|+++.++ +..+ + ...++|.+. ++.+++||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFV-GKTDAGYEIKVTGEDETVITAKHVIIATGSEPRH 159 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-cCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence 001111 11233455699999988 6555 3 235566654 34589999999999999976
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHH
Q psy2951 706 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 785 (1466)
Q Consensus 706 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~ 785 (1466)
++.. +.+....+ +.++...+ ...+++|+|||+|++|+|+|..|++.|.+||++++.+.++ +.+++++...+.+.
T Consensus 160 ~p~~-~~~~~~~~-~~~~~~~~---~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~ 233 (475)
T PRK06327 160 LPGV-PFDNKIIL-DNTGALNF---TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-AAADEQVAKEAAKA 233 (475)
T ss_pred CCCC-CCCCceEE-CcHHHhcc---cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-CcCCHHHHHHHHHH
Confidence 5543 22222112 33333322 2347999999999999999999999999999999998776 45788999999999
Q ss_pred HHhcCcEEEccceEEEEEecCCCceEEEECCC--C--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCC
Q psy2951 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLE 859 (1466)
Q Consensus 786 l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~ 859 (1466)
|+++||++++++++++++..+ +.+ .+.+.+ | +++++|.|++++|++|++++ ++..+++++++|+|.+|++++
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~ 311 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCR 311 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCc
Confidence 999999999999999998433 223 344433 3 47999999999999999884 567889999999999999999
Q ss_pred CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC--cCcccCeeeeeecCceeEEeeccCCC---
Q psy2951 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH--- 934 (1466)
Q Consensus 860 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~--- 934 (1466)
|+.|+|||+|||+..+. .++.|..||+.||.+|++... .++.+|... ++++.+..+|+++..
T Consensus 312 Ts~~~VyA~GD~~~~~~-----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~ 378 (475)
T PRK06327 312 TNVPNVYAIGDVVRGPM-----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKA 378 (475)
T ss_pred cCCCCEEEEEeccCCcc-----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHH
Confidence 99999999999987543 347899999999999998653 244555432 456677788876521
Q ss_pred ---Ccee--E--ec------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 935 ---TQVD--I--VG------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 935 ---~~~~--~--~~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
+-.. . .. ..+...|+|+++ ++++++|++++|.+
T Consensus 379 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~ 426 (475)
T PRK06327 379 EGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPN 426 (475)
T ss_pred cCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 1000 0 00 113467899988 47999999999976
No 91
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.2e-32 Score=330.13 Aligned_cols=339 Identities=19% Similarity=0.217 Sum_probs=236.2
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-.|++|.. ||...+..-..+...++.+-+...++.+.+... +...+.+.+.+.++|+|||||||||+||..
T Consensus 72 p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~ 151 (449)
T TIGR01316 72 LLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASE 151 (449)
T ss_pred ChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHH
Confidence 344456777776 777532221111113455555666665554332 111122334567899999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|++.|++ |+++++.+.+++.. .+.........++.....+.+++.|++++.++.+. +.+++.+. ...||
T Consensus 152 l~~~G~~--V~vie~~~~~GG~l-~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-------~~v~~~~~-~~~yd 220 (449)
T TIGR01316 152 LAKAGHS--VTVFEALHKPGGVV-TYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-------KTATLEEL-FSQYD 220 (449)
T ss_pred HHHCCCc--EEEEecCCCCCcEe-eecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC-------CcCCHHHH-HhhCC
Confidence 9999988 77787765433211 11100001223445555667788899999998431 22333322 34799
Q ss_pred EEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhcc---------cCCCCCcEEEECCChHHHHHHHHHhccCCeEE
Q psy2951 694 KIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP---------HITPESNVVVIGSSFIGMEAAAFCASKVKSVT 761 (1466)
Q Consensus 694 ~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~ 761 (1466)
+||||||+ .|+.|++| |.+ +++...++.....+.. ....+++|+|||+|++|+|+|..+.++|.+||
T Consensus 221 ~viiAtGa~~p~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vt 299 (449)
T TIGR01316 221 AVFIGTGAGLPKLMNIP-GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVH 299 (449)
T ss_pred EEEEeCCCCCCCcCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEE
Confidence 99999998 79999998 866 5665544433322211 12357999999999999999999999999999
Q ss_pred EEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---------CC-----------cEE
Q psy2951 762 VVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---------NG-----------TTI 821 (1466)
Q Consensus 762 lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~---------~g-----------~~i 821 (1466)
++++.++..++.. ....+.++++||+++++..++++..++++++..+.+. +| .++
T Consensus 300 lv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i 374 (449)
T TIGR01316 300 CLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKL 374 (449)
T ss_pred EEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEE
Confidence 9999864322211 2223567889999999999999975445555555432 22 369
Q ss_pred ecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHH
Q psy2951 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 901 (1466)
Q Consensus 822 ~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~ 901 (1466)
++|.||+|+|+.|++.+++..+++++++|+|.+|++++|+.|+|||+|||+..+. ++..|+.||+.||.
T Consensus 375 ~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~-----------~v~~Ai~~G~~AA~ 443 (449)
T TIGR01316 375 EADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA-----------TVIRAMGQGKRAAK 443 (449)
T ss_pred ECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH-----------HHHHHHHHHHHHHH
Confidence 9999999999999998888889999989999999999999999999999986543 34789999999999
Q ss_pred Hhcc
Q psy2951 902 NMVE 905 (1466)
Q Consensus 902 ~i~~ 905 (1466)
+|..
T Consensus 444 ~I~~ 447 (449)
T TIGR01316 444 SINE 447 (449)
T ss_pred HHHh
Confidence 9853
No 92
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.4e-31 Score=320.32 Aligned_cols=344 Identities=19% Similarity=0.293 Sum_probs=244.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC--------CCCCCC----Cccch-----------------hcc-
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLPYDR----VKLSK-----------------QLD- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~--------~~~~~~----~~~~~-----------------~~~- 644 (1466)
.+||+||||||||++||..|+++|.+ |+++|+.. .+++.- +..++ .++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~--V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKK--VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCe--EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 58999999999999999999999998 77777421 112110 00000 000
Q ss_pred -----cCcccccccCHh-----------HhhhCCcEEEEceEEEEeccccccEEEccC---CCEEecCEEEEcCCCCCCc
Q psy2951 645 -----IKADSILLRTEE-----------FYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 645 -----~~~~~~~~~~~~-----------~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~ 705 (1466)
.+..++..+... .++..+|+++.++ +... +. ++|.+.+ +..++||+||||||++|+.
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-a~~~-~~--~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGL-AKLK-DE--HTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEE-EEEc-cC--CEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 111222222222 2233588888877 4444 33 4444432 3579999999999999998
Q ss_pred CC-CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHH
Q psy2951 706 IS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 784 (1466)
Q Consensus 706 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~ 784 (1466)
|+ +| |.+.. ..+.++...+. ..+++++|||+|++|+|+|..|+++|.+||++.+. .++ +.+++++.+.+.+
T Consensus 159 p~~i~-G~~~~--~~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~ 230 (499)
T PTZ00052 159 PEDVP-GAKEY--SITSDDIFSLS---KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-RGFDRQCSEKVVE 230 (499)
T ss_pred CCCCC-Cccce--eecHHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-ccCCHHHHHHHHH
Confidence 85 78 76522 12444443332 24789999999999999999999999999999874 444 6789999999999
Q ss_pred HHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCC
Q psy2951 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNV 862 (1466)
Q Consensus 785 ~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~ 862 (1466)
.|+++||+++++..+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++ +..+++++++|++.+++. +|+.
T Consensus 231 ~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~ 307 (499)
T PTZ00052 231 YMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNI 307 (499)
T ss_pred HHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCC
Confidence 9999999999999999997432 22 35667788899999999999999999875 678899999998777776 9999
Q ss_pred CCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc---CcccCeeeeeecCceeEEeeccCCC-----
Q psy2951 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS---LSTIPFFWTMLFGVGFRFAGYAAGH----- 934 (1466)
Q Consensus 863 ~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~----- 934 (1466)
|+|||+|||+.... ..++.|.+||+.+|+||++.... +..+|+.. +..+.+..+|+++..
T Consensus 308 p~IyAiGDv~~~~~----------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlte~~A~~~~ 375 (499)
T PTZ00052 308 PNIFAVGDVVEGRP----------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYSSEAAIAKY 375 (499)
T ss_pred CCEEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCCHHHHHHhc
Confidence 99999999985321 24579999999999999975432 34455322 335667788876421
Q ss_pred --CceeEe-------------cc-------------cccceEEEEEec---CCeEEEEEeecCc
Q psy2951 935 --TQVDIV-------------GD-------------LEALKFTAYYSN---ADKVLAILTVGMD 967 (1466)
Q Consensus 935 --~~~~~~-------------~~-------------~~~~~~~~~~~~---~~~i~g~~~~g~~ 967 (1466)
.+.... .. ....+|.|++++ +++++|++++|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~ 439 (499)
T PTZ00052 376 GEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPN 439 (499)
T ss_pred CCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCC
Confidence 111000 00 014568999873 5999999999976
No 93
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.2e-31 Score=320.87 Aligned_cols=343 Identities=27% Similarity=0.334 Sum_probs=243.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cch----------------hc-------ccCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSK----------------QL-------DIKA 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~----------------~~-------~~~~ 647 (1466)
.+||+||||||||++||..|++.|.+ |+++|++ .+++.... .++ .+ ..+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKK--VALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF 79 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCe--EEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence 58999999999999999999999988 7788874 22221110 000 00 0111
Q ss_pred ccccccC------------HhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCc-
Q psy2951 648 DSILLRT------------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK- 714 (1466)
Q Consensus 648 ~~~~~~~------------~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~- 714 (1466)
.++..+. ...++..+++++.++ +..+ +. +.+.+ ++.++.||+||||||++ .|++| |.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~--~~v~v-~~~~~~~d~lIiATGs~--~p~ip-g~~~~ 151 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGT-ARFV-DP--NTVEV-NGERIEAKNIVIATGSR--VPPIP-GVWLI 151 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEE-EEEc-cC--CEEEE-CcEEEEeCEEEEeCCCC--CCCCC-CCccc
Confidence 1221111 122345588888776 5554 33 34444 56789999999999998 45555 5420
Q ss_pred -EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 715 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 715 -~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
.....+..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++++.+.++ +.+++++...+.+.|+++ |++
T Consensus 152 ~~~~~~~~~~~~~~~---~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~-I~i 226 (460)
T PRK06292 152 LGDRLLTSDDAFELD---KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKI 226 (460)
T ss_pred CCCcEECchHHhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cchhHHHHHHHHHHHhhc-cEE
Confidence 01112334433222 348999999999999999999999999999999998776 468899999999999999 999
Q ss_pred EccceEEEEEecCCCceEEEEC--CCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 794 VMKANVSSFEKNEKNDVTAANL--DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~--~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++++++++++..++..+ .+.+ .+++++++|.|++++|++|++++ ++..+++++++|+|.||+++||+.|+|||+|
T Consensus 227 ~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~G 305 (460)
T PRK06292 227 KLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAG 305 (460)
T ss_pred EcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEE
Confidence 99999999984332122 2323 23357999999999999999984 5778999999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCc--CcccCeeeeeecCceeEEeeccCC------CCc--ee
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTS--LSTIPFFWTMLFGVGFRFAGYAAG------HTQ--VD 938 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~--~~~~~~~~~~~~~~~~~~~g~~~~------~~~--~~ 938 (1466)
||+..+. .+..|..||+.||.||++. ... +..+|+ ..+++.++..+|+++. .+- ..
T Consensus 306 D~~~~~~-----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~~~~~~~ 372 (460)
T PRK06292 306 DVNGKPP-----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPS--VVFTDPQIASVGLTEEELKAAGIDYVVGE 372 (460)
T ss_pred ecCCCcc-----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCe--EEECCCccEEeECCHHHHHhcCCCeEEEE
Confidence 9987543 3468999999999999974 222 344553 2244667778887652 110 00
Q ss_pred Eec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 939 IVG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 939 ~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
... .-++..|.|+++ ++++++|++++|.+
T Consensus 373 ~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~ 411 (460)
T PRK06292 373 VPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPD 411 (460)
T ss_pred EecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 000 112567899988 46899999999986
No 94
>KOG1346|consensus
Probab=99.97 E-value=1.8e-30 Score=276.45 Aligned_cols=332 Identities=25% Similarity=0.426 Sum_probs=272.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhcccCcc-----------------cccccCh
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD-----------------SILLRTE 103 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 103 (1466)
.++...+|||||.|..+++...+.+.....+..++.++.+||.++++++++....+ +++....
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 44667899999999999999888888888888999999999999999998743221 2222222
Q ss_pred hhh---------hcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCC-----CCcEEEecCH
Q psy2951 104 EFY---------KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG-----VNKVFYLRTV 169 (1466)
Q Consensus 104 ~~~---------~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~-----~~~~~~~~~~ 169 (1466)
.++ .+-||.+..|..++. ++..++.|++.+|.+|.||+++||||.+|+.++.+.. .+.+.+++..
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvk-id~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p 334 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVK-IDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP 334 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEE-eecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence 221 134788999998875 5677899999999999999999999999998876543 3457788899
Q ss_pred HHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC----CCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 170 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 170 ~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
.+...+...+...++|.|||+|++|.|+|..|.+. |.+|+-+......+...++..++++-.+.+++.||.++.+.
T Consensus 335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 99999888777778999999999999999998764 56787776655666666777788888899999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCC-ccEEECCCCCcCCCCEEEecccccccC
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDIAYAPL 324 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~-g~i~vd~~~~t~~~~iya~GD~~~~~~ 324 (1466)
.|.++.... ....+++.||.++..|+|++|+|-.||+++++..|+++|.. |.+.||..++. ..|||++||++.+..
T Consensus 415 ~v~sv~~~~--~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCC--KNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhc--cceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence 999887643 23457899999999999999999999999999999999987 78999998886 369999999998764
Q ss_pred ccCCCCcceeccHHHHHHHHHHHHHHhcCCCCCCCCCCccccccc-ceeeEEEEe
Q psy2951 325 HSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF-GVGFRFAGY 378 (1466)
Q Consensus 325 ~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~p~~~s~~~-~~~~~~~G~ 378 (1466)
. ..| ..|.+|+.+|+-+|+.|++||.+...+|.....||++.. .+++..+|.
T Consensus 492 ~-~LG-rRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGl 544 (659)
T KOG1346|consen 492 G-VLG-RRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGL 544 (659)
T ss_pred c-ccc-ceeccccccceeeceecccccccccCCccccceeeeccCcccccceeee
Confidence 3 333 567999999999999999999999999999999999874 356655554
No 95
>KOG1335|consensus
Probab=99.97 E-value=1.9e-30 Score=274.90 Aligned_cols=347 Identities=22% Similarity=0.352 Sum_probs=251.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC----------C----------CCcc--chhcc-------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----------D----------RVKL--SKQLD------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~----------~----------~~~~--~~~~~------- 644 (1466)
..+|++|||+||+|..||...+++|.+ -..+|++..+++ . ...- ....+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlk--TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLK--TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcce--eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 579999999999999999999999998 445566432221 0 0000 00000
Q ss_pred cC-----------cccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCC-CCcCCCCC
Q psy2951 645 IK-----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSS-PRTISQAD 710 (1466)
Q Consensus 645 ~~-----------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~-~~~~~~~~ 710 (1466)
.+ ..++..-+...+++.+|+++.+. -..+ ++..-.+...++ ..++++++||||||. +..|.+.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~-gsf~-~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~- 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF-GSFL-DPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGIT- 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee-Eeec-CCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeE-
Confidence 01 11111222345667789998888 4444 777777766666 478999999999984 4333322
Q ss_pred CCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh
Q psy2951 711 GVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 788 (1466)
Q Consensus 711 g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 788 (1466)
+| .+. +...+..+. +-+++++|||+|++|+|++..+.++|.+||+++-.+... +.+|.+++...++.|.+
T Consensus 193 -IDekkIV---SStgALsL~---~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~-~~mD~Eisk~~qr~L~k 264 (506)
T KOG1335|consen 193 -IDEKKIV---SSTGALSLK---EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG-GVMDGEISKAFQRVLQK 264 (506)
T ss_pred -ecCceEE---ecCCccchh---hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc-cccCHHHHHHHHHHHHh
Confidence 12 222 223333333 248999999999999999999999999999999998777 45999999999999999
Q ss_pred cCcEEEccceEEEEEecCCCceEEEECC---CC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCC
Q psy2951 789 KGVKFVMKANVSSFEKNEKNDVTAANLD---NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETN 861 (1466)
Q Consensus 789 ~gv~~~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~ 861 (1466)
+|++|++++++...+.+.++.+ .+.+. ++ ++++||.+++++|++|-+.- ++..|++.|..|.+.+|..++|.
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~ 343 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTK 343 (506)
T ss_pred cCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccccc
Confidence 9999999999999997777644 34332 22 47999999999999999874 57789999999999999999999
Q ss_pred CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC--CcCcccCeeeeeecC-ceeEEeeccCCCC---
Q psy2951 862 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK--TSLSTIPFFWTMLFG-VGFRFAGYAAGHT--- 935 (1466)
Q Consensus 862 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~--~~~~~~~~~~~~~~~-~~~~~~g~~~~~~--- 935 (1466)
+|+||++||+...|+.. +.|..||-.+.+.|.+.. -.|..+| +.+|. ..+..+|.++...
T Consensus 344 vP~i~~IGDv~~gpMLA-----------hkAeeegI~~VE~i~g~~~hv~ynciP---~v~ythPEvawVG~TEeqlkee 409 (506)
T KOG1335|consen 344 VPHIYAIGDVTLGPMLA-----------HKAEEEGIAAVEGIAGGHGHVDYNCIP---SVVYTHPEVAWVGKTEEQLKEE 409 (506)
T ss_pred CCceEEecccCCcchhh-----------hhhhhhchhheeeecccCcccccCCCC---ceeecccceeeeccchhhHHhc
Confidence 99999999999888755 789999999999998764 3455555 22222 2244555543210
Q ss_pred -------------ceeEecccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 936 -------------QVDIVGDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 -------------~~~~~~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
......+.+..+|+|... ++++++|++++|++.
T Consensus 410 gi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~A 457 (506)
T KOG1335|consen 410 GIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNA 457 (506)
T ss_pred CcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCH
Confidence 001111334567888887 789999999999984
No 96
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=306.56 Aligned_cols=363 Identities=28% Similarity=0.339 Sum_probs=297.5
Q ss_pred EEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc---CcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI---KADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1069 vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
++|||+|++|+++|..|++...+.+|+++.++++.+|.+++++..+.. ..+.+..... +....+++++.+++|+++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 589999999999999999999889999999999999999999988762 2333333333 334668999999999999
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHh
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~ 1225 (1466)
|+.++.|.+.++ ++.||+|++|||++|+.++.. ...++++++..+++.+++......++++|+|+|++|+++|..++
T Consensus 80 -d~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~ 156 (415)
T COG0446 80 -DPENKVVLLDDG-EIEYDYLVLATGARPRPPPIS-DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA 156 (415)
T ss_pred -cCCCCEEEECCC-cccccEEEEcCCCcccCCCcc-ccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH
Confidence 999999999999 899999999999999988722 34489999999999999877776799999999999999999999
Q ss_pred cCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE--EEcCCCCeeecCEEEEeecc
Q psy2951 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1226 ~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~--v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
++|++|++++..++++.+.+.+++.+.+.+.++++||+++++..+.+++ ...+.... +...++.++++|++++++|.
T Consensus 157 ~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 157 KRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVE-GKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEE-cccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 9999999999999888754438899999999999999999999999998 33333333 67788999999999999999
Q ss_pred ccCccccccCCc-eeeCCCeEEeCCCcccc-CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1304 VLNTNYLDGKGV-ELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1304 ~p~~~~~~~~gl-~~~~~G~i~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
.|++.++.+.+. ....+|++.||++++|+ +++|||+|||+..+.... +...+..+|+.|..|++.++.++.+. ..+
T Consensus 236 ~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~-~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~ 313 (415)
T COG0446 236 RPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAET-GKGGRIALWAIAVAAGRIAAENIAGA-LRI 313 (415)
T ss_pred cccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccC-CceeeeechhhHhhhhHHHHHHhccc-ccc
Confidence 999888887652 34556789999999998 999999999999987652 56678999999999999999999988 444
Q ss_pred -CCCccceeccccccEEEEeeCCCCceEEEc---CCcCCceEEEEEEeCCEEEEEEEecCcH
Q psy2951 1382 -STIPFFWTMLFGVGFRFAGYAAGHTQVDIV---GDLEALKFTAYYSNADKVLAILTVGMDP 1439 (1466)
Q Consensus 1382 -~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1466)
..++++|.++++......|.... .+..+. ..........+++.+...++.-..+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (415)
T COG0446 314 PGLLGTVISDVGDLCAASTGLTEG-KERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDAD 374 (415)
T ss_pred ccccCceEEEEcCeEEEEecCCcc-cccceeeeEEEeccCcccccccCCCCeEEEEEEEcCc
Confidence 67889999999999999998774 322221 0111222234445566666666655543
No 97
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=2.3e-30 Score=331.91 Aligned_cols=349 Identities=21% Similarity=0.187 Sum_probs=239.3
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhccccc---------cccc-cccCCCCCCeEEEEcCchH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---------KLPM-AKLSSGNKDTFIVVGGGPS 606 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~vvVIGgG~A 606 (1466)
-|..-+|++|.. ||...+.. .++.+.+...++.+.+... +.+. .+..+.+.++|+|||||||
T Consensus 244 p~p~~~GrVCp~~~~CE~~C~~------~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPA 317 (944)
T PRK12779 244 PLPNVTGRVCPQELQCQGVCTH------TKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPS 317 (944)
T ss_pred ChhHHhcCcCCCccCHHHhccC------CCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHH
Confidence 455567898877 57763221 1346666666665554311 1100 1112346899999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccC
Q psy2951 607 GATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD 686 (1466)
Q Consensus 607 Gl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~ 686 (1466)
||+||+.|+++|++ |+++|+...+++.. .....-...+.+++.+..+.+++.|++|+.++.+. +.+++++
T Consensus 318 GLsaA~~Lar~G~~--VtVfE~~~~~GG~l-~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-------~dit~~~ 387 (944)
T PRK12779 318 GLINAYLLAVEGFP--VTVFEAFHDLGGVL-RYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-------KTATLED 387 (944)
T ss_pred HHHHHHHHHHCCCe--EEEEeeCCCCCceE-EccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-------cEEeHHH
Confidence 99999999999998 77777765444321 11111112345667777788889999999998542 2355655
Q ss_pred CCEEecCEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhcc----------cCCCCCcEEEECCChHHHHHHHHH
Q psy2951 687 GTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP----------HITPESNVVVIGSSFIGMEAAAFC 753 (1466)
Q Consensus 687 ~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~~----------~~~~~~~vvVvG~G~~g~e~A~~l 753 (1466)
.....||+||||||+ .|+.+++| |.+ +++...++........ ....+|+|+|||||++|+|+|..+
T Consensus 388 l~~~~yDAV~LAtGA~~pr~l~Ip-G~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta 466 (944)
T PRK12779 388 LKAAGFWKIFVGTGAGLPTFMNVP-GEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTA 466 (944)
T ss_pred hccccCCEEEEeCCCCCCCcCCCC-CCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHH
Confidence 556689999999998 59999999 876 6665554443322211 012589999999999999999999
Q ss_pred hccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC-CceEEEEC---------C-------
Q psy2951 754 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANL---------D------- 816 (1466)
Q Consensus 754 ~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~~~v~~---------~------- 816 (1466)
.+.|.+|+++++++....+... +.+.. ..+.||+++++..+++|..+++ +.+..+.+ .
T Consensus 467 ~R~Ga~Vtlv~rr~~~~mpa~~----~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~ 541 (944)
T PRK12779 467 KRLGGNVTIVYRRTKSEMPARV----EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPK 541 (944)
T ss_pred HHcCCEEEEEEecCcccccccH----HHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeee
Confidence 9999999999988642222211 22233 3467999999999999974322 23433321 1
Q ss_pred -CC--cEEecCEEEEccccccCcccc-ccCCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCCceeeeccHHH
Q psy2951 817 -NG--TTIPADLVIVGIGTVLNTNYL-DGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 891 (1466)
Q Consensus 817 -~g--~~i~~D~vi~a~G~~p~~~~~-~~~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~ 891 (1466)
+| .+++||.||+|+|+.|+..+. ...+++++++|.|.+|+ +++|+.|+|||+|||+..+.. +..
T Consensus 542 ~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~-----------vv~ 610 (944)
T PRK12779 542 PTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGST-----------AIR 610 (944)
T ss_pred cCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHH-----------HHH
Confidence 12 369999999999999997543 33578889899999996 589999999999999976543 368
Q ss_pred HHHHHHHHHHHhccCCCcCcccCeeeeeecCc
Q psy2951 892 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGV 923 (1466)
Q Consensus 892 A~~~g~~aA~~i~~~~~~~~~~~~~~~~~~~~ 923 (1466)
|+.+|+.||.+|..... + -|.+|...|..
T Consensus 611 Ai~eGr~AA~~I~~~L~-~--~~~~~~~~~~~ 639 (944)
T PRK12779 611 AAGDGQAAAKEIVGEIP-F--TPAEIKDRVER 639 (944)
T ss_pred HHHHHHHHHHHHHHHhc-c--cccchhhhcch
Confidence 99999999999975322 2 14455444443
No 98
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=6.3e-30 Score=319.51 Aligned_cols=336 Identities=21% Similarity=0.264 Sum_probs=230.7
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCcc---cc-ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKL---PM-AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~ 78 (1466)
||...+.++ ++|+.|..++++........ .. .+....+.++|+||||||||++||+.|++.|++++|++..+..
T Consensus 495 ~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 495 QCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred hhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 454444443 89999999999887542211 11 1112345679999999999999999999999998887654432
Q ss_pred CCCCCCCc-cchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCC
Q psy2951 79 FLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~ 157 (1466)
. .... ....+. .+.++..+..+++.+.+++++.++.+. +.+.+.....||+||||||+++...+.+
T Consensus 575 G---G~lr~~IP~~R-lp~evL~~die~l~~~GVe~~~gt~Vd---------i~le~L~~~gYDaVILATGA~~~~~l~I 641 (1019)
T PRK09853 575 G---GVVKNIIPQFR-IPAELIQHDIEFVKAHGVKFEFGCSPD---------LTVEQLKNEGYDYVVVAIGADKNGGLKL 641 (1019)
T ss_pred C---cceeeeccccc-ccHHHHHHHHHHHHHcCCEEEeCceeE---------EEhhhheeccCCEEEECcCCCCCCCCCC
Confidence 1 1110 000111 122333444567778899999988651 2222333456999999999985443344
Q ss_pred CCCC-cEEE-ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC-C-CEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 158 DGVN-KVFY-LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 158 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
++.. +++. +..+.+..........+++|+|||||++|+|+|..+.+. | .+|++++|.+....+..+ +.+.+.
T Consensus 642 pG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~----eEle~A 717 (1019)
T PRK09853 642 EGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR----EEYEEA 717 (1019)
T ss_pred CCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH----HHHHHH
Confidence 4432 3332 111222212233345689999999999999999988887 4 589999987643323332 333444
Q ss_pred HHhCCcEEEcCceEEEEEecC--------------CCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCCcc
Q psy2951 234 FESKGVKFVMKANVSSFEKNE--------------KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA 299 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~--------------~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~ 299 (1466)
+ +.||++++++.+.++..++ .++...+.++++.++++|.||+|+|..|++++++..|++++++|+
T Consensus 718 l-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~ 796 (1019)
T PRK09853 718 L-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGW 796 (1019)
T ss_pred H-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCC
Confidence 3 4699999998888886321 111222334455689999999999999999999888999888899
Q ss_pred EEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC-CCCCCCccccccc
Q psy2951 300 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-SLSTIPFFWTMLF 369 (1466)
Q Consensus 300 i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~p~~~s~~~ 369 (1466)
+.||++++|+.|+|||+|||+..+ .++..|+.+|+.||.+|++... .+...|++|+...
T Consensus 797 I~VDetlqTs~pgVFAaGD~a~Gp-----------~tvv~Ai~qGr~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 797 PVVDANGETSLTNVYMIGDVQRGP-----------STIVAAIADARRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred EEeCCCcccCCCCEEEEeccccCc-----------hHHHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Confidence 999999999999999999998644 3567899999999999998654 6677788887753
No 99
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=3.6e-30 Score=324.16 Aligned_cols=333 Identities=21% Similarity=0.234 Sum_probs=227.2
Q ss_pred eEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccc---ccc-ccCCCCCCeEEEEcCchHHHHHHHHH
Q psy2951 539 CFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKL---PMA-KLSSGNKDTFIVVGGGPSGATCVETL 614 (1466)
Q Consensus 539 ~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~vvVIGgG~AGl~aA~~l 614 (1466)
-|..-+|++|..||...++.-. -+..+-+...++.+.+++... .+. +.++.+.++|+|||||||||+||+.|
T Consensus 481 Plp~icGrVC~h~Ce~~C~R~~----~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L 556 (1012)
T TIGR03315 481 PLPAITGTICDHQCQYKCTRLD----YDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL 556 (1012)
T ss_pred ChhhHhhCcCCcchHHHhcCCC----CCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence 4455678998889986433221 245666666777666543111 111 12234578999999999999999999
Q ss_pred HHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCE
Q psy2951 615 RQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTK 694 (1466)
Q Consensus 615 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~ 694 (1466)
+++|++ |+++|+++.+++......... ..+.+.+.+..+++.+.||++++++.. . +.+.+.....||+
T Consensus 557 Ar~G~~--VTV~Ek~~~lGG~l~~~IP~~-rlp~e~l~~~ie~l~~~GVe~~~g~~~-d--------~~ve~l~~~gYDa 624 (1012)
T TIGR03315 557 ARAGHP--VTVFEKKEKPGGVVKNIIPEF-RISAESIQKDIELVKFHGVEFKYGCSP-D--------LTVAELKNQGYKY 624 (1012)
T ss_pred HHCCCe--EEEEecccccCceeeeccccc-CCCHHHHHHHHHHHHhcCcEEEEeccc-c--------eEhhhhhcccccE
Confidence 999988 888888765443321111111 122344555567778889999988521 1 1222334567999
Q ss_pred EEEcCCCCC-CcCCCCCCCC-cEEEecCHHHHHhhc---ccCCCCCcEEEECCChHHHHHHHHHhcc-C-CeEEEEeecC
Q psy2951 695 IYLATGSSP-RTISQADGVN-KVFYLRTVEDANNIA---PHITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGA 767 (1466)
Q Consensus 695 lviAtG~~~-~~~~~~~g~~-~~~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~~~-g-~~V~lv~~~~ 767 (1466)
||||||+.+ ..+.++ |.+ .++ ..++....+. .....+++|+|||||++|+|+|..+.+. | .+|++++|..
T Consensus 625 VIIATGA~~~~~l~I~-G~~~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 625 VILAIGAWKHGPLRLE-GGGERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred EEECCCCCCCCCCCcC-CCCccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 999999874 455666 543 332 2333333322 1234599999999999999999998876 6 4899999987
Q ss_pred ccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC--------------CceEEEECCCCcEEecCEEEEccccc
Q psy2951 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--------------NDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~--------------~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
...++....+ +.+. .++||+++++..+.+++ ++. ++...+...+..++++|+||+|+|+.
T Consensus 702 ~~~Mpa~~eE----l~~a-leeGVe~~~~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 702 KRYMPASREE----LEEA-LEDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred ccccccCHHH----HHHH-HHcCCEEEeCCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 4333333333 3333 35799999998888886 211 11111111222378999999999999
Q ss_pred cCccccccCCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 834 LNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 834 p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|++++++..|++++++|++.+|++ ++|+.|+|||+|||+..|.. +..|+.||+.||.+|++..
T Consensus 776 Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~t-----------Vv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 776 VDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPAT-----------IVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccH-----------HHHHHHHHHHHHHHHhccc
Confidence 999999889999999999999985 89999999999999866543 4689999999999998754
No 100
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=1.1e-29 Score=295.48 Aligned_cols=278 Identities=23% Similarity=0.315 Sum_probs=210.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------cchhc-ccCcccccccCHhHhhhCCcEEEEc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------LSKQL-DIKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
+||+|||||+|||+||..|++.|++ |+++|+... ++.... ++... .....++..++.+.+++.++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~- 76 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK--TLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY- 76 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC--EEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-
Confidence 5899999999999999999999988 778887641 111100 00000 022345566777778889999999
Q ss_pred eEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEEC
Q psy2951 669 KKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 669 ~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG 741 (1466)
++|..+ +... ..+.+.++.++.||+||+|||+.|..|++| |.+ .++..... .....++++|+|||
T Consensus 77 ~~v~~v-~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~-g~~~~~~~~~~~~~~~------~~~~~~~~~v~ViG 148 (300)
T TIGR01292 77 EEVIKV-DLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP-GEDEFLGRGVSYCATC------DGPFFKNKEVAVVG 148 (300)
T ss_pred EEEEEE-EecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC-ChhhcCCccEEEeeec------ChhhcCCCEEEEEC
Confidence 668888 5544 356666778999999999999999988888 754 22222111 11223589999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEEC-----
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANL----- 815 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~----- 815 (1466)
+|++|+|+|..|++.+.+|+++.+.+... ....+.+.++++ ||++++++++++++.. +++..+.+
T Consensus 149 ~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~ 219 (300)
T TIGR01292 149 GGDSAIEEALYLTRIAKKVTLVHRRDKFR-------AEKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVT 219 (300)
T ss_pred CChHHHHHHHHHHhhcCEEEEEEeCcccC-------cCHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCC
Confidence 99999999999999999999999987542 123456667777 9999999999999843 24444443
Q ss_pred CCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHH
Q psy2951 816 DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 895 (1466)
Q Consensus 816 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~ 895 (1466)
.+++++++|.+|+|+|++|+.++++.. ++++++|++.+|++++|++|+||++|||+.... ..+..|+.|
T Consensus 220 g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~----------~~~~~A~~~ 288 (300)
T TIGR01292 220 GEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY----------RQAVTAAGD 288 (300)
T ss_pred CceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch----------hhhhhhhhh
Confidence 223579999999999999999888877 778888999999999999999999999997311 235689999
Q ss_pred HHHHHHHhcc
Q psy2951 896 GRIAALNMVE 905 (1466)
Q Consensus 896 g~~aA~~i~~ 905 (1466)
|+.||.+|..
T Consensus 289 g~~aa~~i~~ 298 (300)
T TIGR01292 289 GCIAALSAER 298 (300)
T ss_pred HHHHHHHHHh
Confidence 9999999853
No 101
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.97 E-value=5.4e-30 Score=315.03 Aligned_cols=282 Identities=25% Similarity=0.347 Sum_probs=214.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccchhc---ccCcccccccCHhHhhhCCcEEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQL---DIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
...+||+|||||||||+||..|++.|++ ++++++. +++... .+.... .....++...+.+.+++.+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~--v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLR--TAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 4579999999999999999999999998 5555542 222111 111111 12334555666777888899999
Q ss_pred EceEEEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEE
Q psy2951 667 KGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 739 (1466)
Q Consensus 667 ~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvV 739 (1466)
.+++|..+ +.. ...+.++++..+.||++|+|||+.|+.|++| |.+ .++.... +......+++|+|
T Consensus 286 ~~~~V~~I-~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ip-G~~~~~~~~v~~~~~------~~~~~~~~k~VvV 357 (515)
T TIGR03140 286 ENQRAKKI-ETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVP-GEKEYIGKGVAYCPH------CDGPFFKGKDVAV 357 (515)
T ss_pred cCCEEEEE-EecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCC-CHHHcCCCeEEEeec------cChhhcCCCEEEE
Confidence 99989888 443 3566677788899999999999999999888 753 2222211 1122335899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECCC-
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN- 817 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~~- 817 (1466)
||+|++|+|+|..|++.+.+||++++.+.+.. ...+.+.+++ +||++++++.+++++ ++++++..+.+.+
T Consensus 358 iGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~-~~~~~v~~v~~~~~ 429 (515)
T TIGR03140 358 IGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIV-GDGDKVTGIRYQDR 429 (515)
T ss_pred ECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEE-cCCCEEEEEEEEEC
Confidence 99999999999999999999999998875431 2345666766 699999999999998 3344555565543
Q ss_pred --C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 818 --G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 818 --g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
+ +++++|.|++++|++|++++++.. ++++++|+|.+|+++||++|+|||+|||+..+... +..|+
T Consensus 430 ~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~----------~~~A~ 498 (515)
T TIGR03140 430 NSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ----------IIIAM 498 (515)
T ss_pred CCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce----------EEEEE
Confidence 2 479999999999999999998876 88888899999999999999999999999865421 13699
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|..||.+|..
T Consensus 499 ~~G~~Aa~~i~~ 510 (515)
T TIGR03140 499 GEGAKAALSAFD 510 (515)
T ss_pred ccHHHHHHHHHH
Confidence 999999998864
No 102
>PRK10262 thioredoxin reductase; Provisional
Probab=99.97 E-value=9.6e-30 Score=296.30 Aligned_cols=290 Identities=20% Similarity=0.261 Sum_probs=205.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccch---hc----ccCcccccccCHhHhhhCCcEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK---QL----DIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
...++|+|||||||||+||..|+++|++ +++++.... +........ .. ..+...+..++.+....+++++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~--~~~ie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ--PVLITGMEK-GGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC--eEEEEeecC-CCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999998 555553321 111000000 00 1223334555566667778888
Q ss_pred EEceEEEEeccccccEEEcc-CCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCh
Q psy2951 666 IKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744 (1466)
Q Consensus 666 ~~~~~v~~i~~~~~~~v~~~-~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~ 744 (1466)
+.++ |..+ +.....+.+. +...+.||+||||||+.|+.|++| |.+. +..+.+..+..+......+++|+|||+|+
T Consensus 81 ~~~~-v~~v-~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~-g~~~-~~~~~v~~~~~~~~~~~~g~~vvVvGgG~ 156 (321)
T PRK10262 81 IFDH-INKV-DLQNRPFRLTGDSGEYTCDALIIATGASARYLGLP-SEEA-FKGRGVSACATCDGFFYRNQKVAVIGGGN 156 (321)
T ss_pred EeeE-EEEE-EecCCeEEEEecCCEEEECEEEECCCCCCCCCCCC-CHHH-cCCCcEEEeecCCHHHcCCCEEEEECCCH
Confidence 7775 6666 5444443322 234789999999999999999998 7541 11111111111222233589999999999
Q ss_pred HHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC------C
Q psy2951 745 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN------G 818 (1466)
Q Consensus 745 ~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~------g 818 (1466)
+|+|+|..|++.+++|+++++.+... .++.+.+.+.+.|++.||++++++.+++++. ++..+..+.+.+ .
T Consensus 157 ~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~ 232 (321)
T PRK10262 157 TAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNI 232 (321)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeE
Confidence 99999999999999999999987542 3466778888889999999999999999984 333444455433 2
Q ss_pred cEEecCEEEEccccccCccccccCCceeeCCCcEEeCC-----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
+++++|.|++++|++|+..+++. ++.++ +|+|.+|+ +++|++|+|||+|||+..+... ...|+
T Consensus 233 ~~i~~D~vv~a~G~~p~~~l~~~-~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~----------~~~A~ 300 (321)
T PRK10262 233 ESLDVAGLFVAIGHSPNTAIFEG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ----------AITSA 300 (321)
T ss_pred EEEECCEEEEEeCCccChhHhhc-ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcce----------EEEEe
Confidence 47999999999999999987764 56654 58899997 6899999999999999654321 12588
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|..||..|..
T Consensus 301 ~~g~~Aa~~~~~ 312 (321)
T PRK10262 301 GTGCMAALDAER 312 (321)
T ss_pred hhHHHHHHHHHH
Confidence 999999988753
No 103
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.7e-29 Score=304.83 Aligned_cols=284 Identities=23% Similarity=0.313 Sum_probs=211.4
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCCCchhhccCcccccccChhhhccCCcEEEc
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 1138 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1138 (1466)
....++|+|||||+||++||..|++.|+ +|+|||+++.++ |..|. +..+.+.+.....+++++.|+++++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~----~~l~~~~~~~~~~~~~~~~gv~i~~ 210 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY--DVTIFEALHEPGGVLVYGIPE----FRLPKETVVKKEIENIKKLGVKIET 210 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEecCCCCCCeeeecCCC----ccCCccHHHHHHHHHHHHcCCEEEc
Confidence 3456899999999999999999999999 999999877543 22121 0111122323334567788999999
Q ss_pred CCeEEEeecCCCCeEEecCC-cEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhc--------ccCCCC
Q psy2951 1139 GKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP--------HITPES 1206 (1466)
Q Consensus 1139 ~~~v~~i~d~~~~~v~~~~g-~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~--------~~~~~~ 1206 (1466)
++.+. +.+.+++. ..+.||+||||||+ .|+.+++| |.+ +++...++.+...+.. ....++
T Consensus 211 ~~~v~-------~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk 282 (464)
T PRK12831 211 NVVVG-------KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIP-GENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGK 282 (464)
T ss_pred CCEEC-------CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCC-CcCCcCcEEHHHHHHHHHhcccccccccCcccCCC
Confidence 98442 12333332 34579999999998 79999999 876 7877665554433221 234589
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
+|+|||+|++|+|+|..+.+.|.+|+++++..... ++.... .+ +.+++.||+++++..+.++...++|++..|++
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~---m~a~~~-e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~ 357 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEE---LPARVE-EV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKC 357 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCccc---CCCCHH-HH-HHHHHcCCEEEecccceEEEecCCCeEEEEEE
Confidence 99999999999999999999999999999875321 111111 12 23567899999999999997334566665554
Q ss_pred C------------------CCC--eeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCC-ccccCCCEEEeccccc
Q psy2951 1287 D------------------NGT--TIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEY-LETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1287 ~------------------~g~--~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~-~~t~~~~v~a~GD~a~ 1344 (1466)
. +|+ ++++|.||+|+|..|++.++.. .|+.++.+|+|.||++ ++|+.|+|||+|||+.
T Consensus 358 ~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~ 437 (464)
T PRK12831 358 IKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVT 437 (464)
T ss_pred EEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCC
Confidence 2 232 6899999999999999988876 7899988899999987 9999999999999987
Q ss_pred CCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1345 APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1345 ~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.+.. +..|+.+|+.||.+|..
T Consensus 438 g~~~-----------v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 438 GAAT-----------VILAMGAGKKAAKAIDE 458 (464)
T ss_pred CchH-----------HHHHHHHHHHHHHHHHH
Confidence 5543 37899999999999863
No 104
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=1e-29 Score=306.99 Aligned_cols=280 Identities=21% Similarity=0.287 Sum_probs=211.6
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC----CCCCCchhhccCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++. ..+. + ....++.....+++.+.+++++.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~--~V~vie~~~~~GG~l~~gip~----~-~~~~~~~~~~~~~l~~~gv~~~~~ 203 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH--SVTVFEALHKPGGVVTYGIPE----F-RLPKEIVVTEIKTLKKLGVTFRMN 203 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC--cEEEEecCCCCCcEeeecCCC----c-cCCHHHHHHHHHHHHhCCcEEEeC
Confidence 346799999999999999999999998 9999999875432 1111 0 011122222334567789999988
Q ss_pred CeEEEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhc---------ccCCCCe
Q psy2951 1140 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP---------HITPESN 1207 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~---------~~~~~~~ 1207 (1466)
+.+ . +.+.+++. ...||+||||||+ .|+.+++| |.+ +++...++.+...+.. ....+++
T Consensus 204 ~~v-~------~~v~~~~~-~~~yd~viiAtGa~~p~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~ 274 (449)
T TIGR01316 204 FLV-G------KTATLEEL-FSQYDAVFIGTGAGLPKLMNIP-GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKS 274 (449)
T ss_pred Ccc-C------CcCCHHHH-HhhCCEEEEeCCCCCCCcCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCe
Confidence 733 1 23444433 3579999999998 79999999 876 7777665544333321 1235799
Q ss_pred EEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC
Q psy2951 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD 1287 (1466)
Q Consensus 1208 vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~ 1287 (1466)
|+|||+|++|+|+|..+++.|.+||++++.++..... .....+.+++.||+|+++..++++...+++++..|++.
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~-----~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~ 349 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTA-----RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFR 349 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCC-----CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEE
Confidence 9999999999999999999999999999876422111 12233557889999999999999973344666666553
Q ss_pred ---------CC-----------CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCC
Q psy2951 1288 ---------NG-----------TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1288 ---------~g-----------~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~ 1347 (1466)
+| .++++|.||+|+|..|++.+++..|+.++.+|+|.||++++|+.|+|||+|||+..+.
T Consensus 350 ~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~ 429 (449)
T TIGR01316 350 KMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA 429 (449)
T ss_pred EEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH
Confidence 33 2689999999999999999999889999888999999999999999999999986544
Q ss_pred ccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1348 HSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1348 ~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.+..|+.||+.||.+|.
T Consensus 430 -----------~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 430 -----------TVIRAMGQGKRAAKSIN 446 (449)
T ss_pred -----------HHHHHHHHHHHHHHHHH
Confidence 34789999999999985
No 105
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-29 Score=282.19 Aligned_cols=284 Identities=24% Similarity=0.325 Sum_probs=215.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccchhcc----cCcccccccCHhHhhhCCcEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQLD----IKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
..+||+|||||||||+||.++++.+.++.| +++.... ++... ....+++ ....++..+..++....++++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~l-i~~~~~~-gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVL-ILEGGEP-GGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEE-EEecCCc-CCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 368999999999999999999999987433 3333211 11111 1111111 4556677777778888899999
Q ss_pred EceEEEEecccc-ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChH
Q psy2951 667 KGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFI 745 (1466)
Q Consensus 667 ~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 745 (1466)
..+ |..+.... .+.|+++++. +++++||||||..++.|.+| |.. -+..+.+..+..+.. +.++|+|+|||||++
T Consensus 80 ~~~-v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~-~e~-e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~s 154 (305)
T COG0492 80 EDE-VEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVP-GEE-EFEGKGVSYCATCDG-FFKGKDVVVIGGGDS 154 (305)
T ss_pred EEE-EEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCC-cch-hhcCCceEEeeecCc-cccCCeEEEEcCCHH
Confidence 844 88883334 5778887776 99999999999999999888 644 222233333333444 456899999999999
Q ss_pred HHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCC----cE
Q psy2951 746 GMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNG----TT 820 (1466)
Q Consensus 746 g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g----~~ 820 (1466)
|+|-|.+|.+.+++||+++|.+.... .+.+.+.++++ +|++++++.+.++.. ++ +..+.+.+. ++
T Consensus 155 Ave~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G-~~--v~~v~l~~~~~~~~~ 224 (305)
T COG0492 155 AVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILG-DD--VEGVVLKNVKGEEKE 224 (305)
T ss_pred HHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEec-Cc--cceEEEEecCCceEE
Confidence 99999999999999999999985432 34455666665 899999999999983 22 455665553 37
Q ss_pred EecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 900 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA 900 (1466)
+++|.+++++|..|++++++..++ ++++|+|.+|+.++||+|+|||+||++..+... +..|..+|.+||
T Consensus 225 ~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~rq----------i~ta~~~G~~Aa 293 (305)
T COG0492 225 LPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNGRQ----------IATAAGDGAIAA 293 (305)
T ss_pred EEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcccE----------EeehhhhHHHHH
Confidence 899999999999999999998877 889999999999999999999999999876531 246888888888
Q ss_pred HHhcc
Q psy2951 901 LNMVE 905 (1466)
Q Consensus 901 ~~i~~ 905 (1466)
.++..
T Consensus 294 ~~a~~ 298 (305)
T COG0492 294 LSAER 298 (305)
T ss_pred HHHHH
Confidence 87643
No 106
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=328.67 Aligned_cols=336 Identities=19% Similarity=0.239 Sum_probs=236.7
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhcccccccccc-ccCCCCCCeEEEEcCchHHHHHHHHHH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMA-KLSSGNKDTFIVVGGGPSGATCVETLR 615 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vvVIGgG~AGl~aA~~l~ 615 (1466)
-|..-+|++|.. ||...+.. . ..++.+.+...++.+.+......+. +..+.+.++|+|||||||||+||..|+
T Consensus 375 p~p~~~grvCp~~~~Ce~~C~~--~--~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La 450 (1006)
T PRK12775 375 IFPSICGRVCPQETQCEAQCII--A--KKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV 450 (1006)
T ss_pred ChHHHhcCcCCCCCCHHHhCcC--C--CCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 455567888886 78763222 1 1356777888888777664322222 122345789999999999999999999
Q ss_pred HcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCE
Q psy2951 616 QNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTK 694 (1466)
Q Consensus 616 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~ 694 (1466)
++|++ |+++++.+.+++.. .........+.+++.+..+++++.|++++.++.+ .. .+++.+. ....||+
T Consensus 451 ~~G~~--VtV~E~~~~~GG~l-~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v-g~------~~~~~~l~~~~~yDa 520 (1006)
T PRK12775 451 KYGVD--VTVYEALHVVGGVL-QYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI-GK------TFTVPQLMNDKGFDA 520 (1006)
T ss_pred HcCCc--EEEEecCCCCccee-eccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc-CC------ccCHHHHhhccCCCE
Confidence 99998 77777765543221 1111111234566777788889999999999743 21 1222211 1346999
Q ss_pred EEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhc---------ccCCCCCcEEEECCChHHHHHHHHHhccCC-eEE
Q psy2951 695 IYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIA---------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVT 761 (1466)
Q Consensus 695 lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~---------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~ 761 (1466)
||||||+ .|+.+++| |.+ +++...++....++. .....+|+|+|||||++|+++|..+.++|. .|+
T Consensus 521 ViIATGa~~pr~l~Ip-G~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vt 599 (1006)
T PRK12775 521 VFLGVGAGAPTFLGIP-GEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVR 599 (1006)
T ss_pred EEEecCCCCCCCCCCC-CcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 9999998 58999999 865 666554444333221 112368999999999999999999999986 588
Q ss_pred EEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC-----------------CC--cEEe
Q psy2951 762 VVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NG--TTIP 822 (1466)
Q Consensus 762 lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~-----------------~g--~~i~ 822 (1466)
+++|.....++....+ .+.+++.||+++++..+.++..++++++..+.+. +| .+++
T Consensus 600 iv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~ 674 (1006)
T PRK12775 600 CVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLE 674 (1006)
T ss_pred EEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEE
Confidence 8988754322211111 2456788999999999999975556666554331 12 2699
Q ss_pred cCEEEEccccccCcccccc-CCceeeCCCcEEeCC-----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHH
Q psy2951 823 ADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896 (1466)
Q Consensus 823 ~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g 896 (1466)
+|.||+|+|+.|++.++.. .++.++++|.|.+|+ +++|+.|+|||+||++..+. ++..|+.+|
T Consensus 675 ~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~-----------~vv~Ai~~G 743 (1006)
T PRK12775 675 CDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA-----------TVILAMGAG 743 (1006)
T ss_pred cCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc-----------HHHHHHHHH
Confidence 9999999999999877654 478888889999996 78999999999999987654 346899999
Q ss_pred HHHHHHhcc
Q psy2951 897 RIAALNMVE 905 (1466)
Q Consensus 897 ~~aA~~i~~ 905 (1466)
+.||.+|..
T Consensus 744 r~AA~~I~~ 752 (1006)
T PRK12775 744 RRAARSIAT 752 (1006)
T ss_pred HHHHHHHHH
Confidence 999999864
No 107
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-29 Score=279.30 Aligned_cols=286 Identities=24% Similarity=0.316 Sum_probs=211.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhc-----ccCcccccccChhhhhcCCeEEEeC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-----DIKADSILLRTEEFYKDNDIHVIKG 116 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (1466)
+++||+|||||||||+||.++++.+.++.|++-......-.......+.+ .....++.....++....++++...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~ 81 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED 81 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence 46899999999999999999999999855544332221100111111111 2345566777777888889998884
Q ss_pred ceEEEecccc-ccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHH
Q psy2951 117 KKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 195 (1466)
Q Consensus 117 ~~v~~~~~~~-~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 195 (1466)
... ...... .++|+++++. +++++||||||..++.+. .++.. -+..+.+..+..++. ++++|+|+|||||++++
T Consensus 82 ~v~-~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~-~~~e~-e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAv 156 (305)
T COG0492 82 EVE-KVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLG-VPGEE-EFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAV 156 (305)
T ss_pred EEE-EEeecCceEEEEECCCe-EEEeEEEECcCCcccCCC-CCcch-hhcCCceEEeeecCc-cccCCeEEEEcCCHHHH
Confidence 333 322333 6788887777 999999999999988654 32322 233345555555566 67789999999999999
Q ss_pred HHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCCeEEEEcCCC----cEEe
Q psy2951 196 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNG----TTIP 270 (1466)
Q Consensus 196 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~ 270 (1466)
|.|..|.+.+++||+++|.+.... .+.+.+.++++ +|++++++.+.++.+++ +..+.+.+. +.+.
T Consensus 157 e~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~~~~~~~~~ 226 (305)
T COG0492 157 EEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNVKGEEKELP 226 (305)
T ss_pred HHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEecCCceEEEE
Confidence 999999999999999999865432 23445555655 89999999999998753 334444432 3789
Q ss_pred ccEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHH
Q psy2951 271 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN 350 (1466)
Q Consensus 271 ~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~ 350 (1466)
+|-+++++|..|++++++..++ ++++|+|.+|+.++||+|+|||+||++..+. .++..|..+|.+||.+
T Consensus 227 ~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~----------rqi~ta~~~G~~Aa~~ 295 (305)
T COG0492 227 VDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNG----------RQIATAAGDGAIAALS 295 (305)
T ss_pred eceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcc----------cEEeehhhhHHHHHHH
Confidence 9999999999999999988777 8889999999999999999999999987642 1455688888888887
Q ss_pred hcC
Q psy2951 351 MVE 353 (1466)
Q Consensus 351 i~~ 353 (1466)
+..
T Consensus 296 a~~ 298 (305)
T COG0492 296 AER 298 (305)
T ss_pred HHH
Confidence 654
No 108
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.97 E-value=4.3e-29 Score=307.70 Aligned_cols=282 Identities=26% Similarity=0.354 Sum_probs=215.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccch---hcccCcccccccCHhHhhhCCcEEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSK---QLDIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
...+||+||||||||++||.+|+++|++ ++++++. +++... .... .......++...+.+.+++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~--v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIR--TGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4468999999999999999999999998 5666543 121110 0110 1113444566677778888999999
Q ss_pred EceEEEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEE
Q psy2951 667 KGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 739 (1466)
Q Consensus 667 ~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvV 739 (1466)
.+++|..+ +.. .+.+.+.++.++.||+||+|||++|+.+++| |.+ .+++... +.....++|+|+|
T Consensus 285 ~~~~V~~I-~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ip-G~~~~~~~~v~~~~~------~~~~~~~gk~VvV 356 (517)
T PRK15317 285 NLQRASKL-EPAAGLIEVELANGAVLKAKTVILATGARWRNMNVP-GEDEYRNKGVAYCPH------CDGPLFKGKRVAV 356 (517)
T ss_pred cCCEEEEE-EecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCC-CHHHhcCceEEEeec------cCchhcCCCEEEE
Confidence 99889888 443 4567777788999999999999999999888 753 2222211 1122335899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECC--
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLD-- 816 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~-- 816 (1466)
||+|++|+|+|..|+..+++|+++.+.+.+.. ...+.+.+.+ .||++++++.++++.. +++++..+.+.
T Consensus 357 VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~ 428 (517)
T PRK15317 357 IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDR 428 (517)
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEEC
Confidence 99999999999999999999999999875431 2345555665 6999999999999983 34555555543
Q ss_pred -CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 817 -NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 817 -~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
++ +++++|.+++++|++|++++++.. +.++++|+|.+|+++||+.|+|||+|||+..+... ...|+
T Consensus 429 ~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~----------~~~A~ 497 (517)
T PRK15317 429 TTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQ----------IIIAM 497 (517)
T ss_pred CCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCE----------EEEhh
Confidence 23 369999999999999999998876 88888899999999999999999999999865432 24799
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|..||.+++.
T Consensus 498 ~eG~~Aa~~~~~ 509 (517)
T PRK15317 498 GEGAKAALSAFD 509 (517)
T ss_pred hhHHHHHHHHHH
Confidence 999999988864
No 109
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=1.9e-29 Score=324.12 Aligned_cols=336 Identities=23% Similarity=0.284 Sum_probs=233.1
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcC-eEEEEEcccchhcccccc---ccccccCCCCCCeEEEEcCchHHHHHHH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQND-DSVVVQARKDELKNKKRK---LPMAKLSSGNKDTFIVVGGGPSGATCVE 612 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vvVIGgG~AGl~aA~ 612 (1466)
-|..-.|++|.. ||... |.... .+ ..+.+...++...+.... ...+.+.+.+.++|+|||||||||+||.
T Consensus 373 p~p~~~grvC~~~~~Ce~~--c~~~~--~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~ 448 (752)
T PRK12778 373 ALPAVCGRVCPQEKQCESK--CIHGK--MGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAG 448 (752)
T ss_pred CchhHhcCcCCCcCchHHh--cccCC--CCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHH
Confidence 344456887764 67643 22221 23 455555555555543211 1122223456789999999999999999
Q ss_pred HHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEec
Q psy2951 613 TLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDF 692 (1466)
Q Consensus 613 ~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~ 692 (1466)
.|+++|++ |+++++.+.+++.. .........+.++..+..+++++.|++++.++.+. +.+++++.....|
T Consensus 449 ~l~~~G~~--V~v~e~~~~~GG~l-~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-------~~v~~~~l~~~~y 518 (752)
T PRK12778 449 DLAKRGYD--VTVFEALHEIGGVL-KYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-------KTITIEELEEEGF 518 (752)
T ss_pred HHHHCCCe--EEEEecCCCCCCee-eecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-------CcCCHHHHhhcCC
Confidence 99999998 77888765433211 11100001223455566677888999999988541 2233444445679
Q ss_pred CEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhc--------ccCCCCCcEEEECCChHHHHHHHHHhccCCe-E
Q psy2951 693 TKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIA--------PHITPESNVVVIGSSFIGMEAAAFCASKVKS-V 760 (1466)
Q Consensus 693 d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~--------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-V 760 (1466)
|+||||||+ .|+.+++| |.+ ++++..++....... .....+++|+|||+|++|+|+|..+.++|.+ |
T Consensus 519 davvlAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V 597 (752)
T PRK12778 519 KGIFIASGAGLPNFMNIP-GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERV 597 (752)
T ss_pred CEEEEeCCCCCCCCCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 999999998 59999999 876 566555444332211 1123589999999999999999999999987 9
Q ss_pred EEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---------CC-----------cE
Q psy2951 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---------NG-----------TT 820 (1466)
Q Consensus 761 ~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~---------~g-----------~~ 820 (1466)
|++++.+....+....+ .+.++++||+++++..+.++..++++++..+.+. +| .+
T Consensus 598 tlv~r~~~~~~~~~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~ 672 (752)
T PRK12778 598 TIVYRRSEEEMPARLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFT 672 (752)
T ss_pred EEeeecCcccCCCCHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEE
Confidence 99998764322221111 1346788999999999999975455555554431 12 26
Q ss_pred EecCEEEEccccccCccccccC-CceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTNYLDGK-GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 899 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~~~~~~-gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~a 899 (1466)
+++|.||+|+|++|+..++... +++++++|+|.+|++++|+.|+|||+|||+..+. .+..|+.+|+.|
T Consensus 673 i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~-----------~vv~Av~~G~~A 741 (752)
T PRK12778 673 VDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA-----------TVILAMGDGKRA 741 (752)
T ss_pred EECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-----------HHHHHHHHHHHH
Confidence 9999999999999998776654 8889989999999999999999999999987543 346899999999
Q ss_pred HHHhcc
Q psy2951 900 ALNMVE 905 (1466)
Q Consensus 900 A~~i~~ 905 (1466)
|.+|..
T Consensus 742 A~~I~~ 747 (752)
T PRK12778 742 AAAIDE 747 (752)
T ss_pred HHHHHH
Confidence 999864
No 110
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.96 E-value=2.4e-29 Score=306.22 Aligned_cols=287 Identities=25% Similarity=0.292 Sum_probs=207.0
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEce
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 669 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 669 (1466)
+++...++|+|||||||||++|..|+++|++ |+++++.+.+++... ..........++..+..+++++.|++++.++
T Consensus 135 ~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~--V~lie~~~~~gG~l~-~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~ 211 (457)
T PRK11749 135 RAPKTGKKVAVIGAGPAGLTAAHRLARKGYD--VTIFEARDKAGGLLR-YGIPEFRLPKDIVDREVERLLKLGVEIRTNT 211 (457)
T ss_pred CCccCCCcEEEECCCHHHHHHHHHHHhCCCe--EEEEccCCCCCcEee-ccCCCccCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 3445678999999999999999999999987 888888765432111 0000001233555666677888999999998
Q ss_pred EEEEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC--cEEEecCHHHHHhhc---ccCCCCCcEEEECCC
Q psy2951 670 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIA---PHITPESNVVVIGSS 743 (1466)
Q Consensus 670 ~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~---~~~~~~~~vvVvG~G 743 (1466)
.+.. .+.+.+. .+.||+||||||+. ++.++++ |.+ +++............ ..+..+++|+|||+|
T Consensus 212 ~v~~-------~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~-G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG 282 (457)
T PRK11749 212 EVGR-------DITLDEL-RAGYDAVFIGTGAGLPRFLGIP-GENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGG 282 (457)
T ss_pred EECC-------ccCHHHH-HhhCCEEEEccCCCCCCCCCCC-CccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCC
Confidence 5421 1222222 36899999999985 7777888 765 444332222222211 122358999999999
Q ss_pred hHHHHHHHHHhccCC-eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC-------
Q psy2951 744 FIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL------- 815 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~------- 815 (1466)
++|+|+|..+.+.|. +|+++++.+...++.. ....+.+++.||+++++..+.++..+ ++.+..+.+
T Consensus 283 ~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-----~~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~ 356 (457)
T PRK11749 283 NTAMDAARTAKRLGAESVTIVYRRGREEMPAS-----EEEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGE 356 (457)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-----HHHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecC
Confidence 999999999999987 8999998764322221 12346678899999999999999843 322222322
Q ss_pred ------------CCCcEEecCEEEEccccccCccccc-cCCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCC
Q psy2951 816 ------------DNGTTIPADLVIVGIGTVLNTNYLD-GKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYN 881 (1466)
Q Consensus 816 ------------~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~ 881 (1466)
.+++++++|.||+++|++|+..++. ..++.++++|++.+|+ +++|+.|+|||+|||+..+.
T Consensus 357 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----- 431 (457)
T PRK11749 357 PDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----- 431 (457)
T ss_pred cCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch-----
Confidence 1334799999999999999987764 5678888899999998 89999999999999985432
Q ss_pred ceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 882 KNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 882 ~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.+..|+.||+.||.+|..
T Consensus 432 ------~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 432 ------TVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 347899999999999864
No 111
>KOG4716|consensus
Probab=99.96 E-value=9.2e-29 Score=257.10 Aligned_cols=390 Identities=22% Similarity=0.295 Sum_probs=261.0
Q ss_pred cccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-------Cccchh-------------
Q psy2951 33 LPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-------VKLSKQ------------- 90 (1466)
Q Consensus 33 ~~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-------~~~~~~------------- 90 (1466)
.++.+...+..+|++|||||-+||+||.++++.|.+|.++..-...... +.. ....+.
T Consensus 9 ~~l~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~ 88 (503)
T KOG4716|consen 9 LPLARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALH 88 (503)
T ss_pred cchhhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHH
Confidence 3444556667899999999999999999999999999888754432111 000 000000
Q ss_pred ----cccCccc--ccccChh------------------hhhcCCeEEEeCceEEEeccccccEEEe--cCC--cEEecCE
Q psy2951 91 ----LDIKADS--ILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKKIKL--QDG--TSIDFTK 142 (1466)
Q Consensus 91 ----~~~~~~~--~~~~~~~------------------~~~~~~v~~~~~~~v~~~~~~~~~~v~~--~~~--~~~~~d~ 142 (1466)
++...++ +...... .+++..+.++.....+. +..++.. ..+ +.+++++
T Consensus 89 da~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv----~~h~I~at~~~gk~~~~ta~~ 164 (503)
T KOG4716|consen 89 DARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFV----DPHKIKATNKKGKERFLTAEN 164 (503)
T ss_pred HHHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeec----ccceEEEecCCCceEEeecce
Confidence 0111111 1111111 11222333333332222 1233333 233 3589999
Q ss_pred EEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccccccc
Q psy2951 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 143 lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~ 222 (1466)
++||||.+|+.| .+|+... +.-+.+|...+.. .|+ +.+|||+|++++|+|..|+.+|.+||+..|+- +.+.|
T Consensus 165 fvIatG~RPrYp-~IpG~~E--y~ITSDDlFsl~~--~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGF 236 (503)
T KOG4716|consen 165 FVIATGLRPRYP-DIPGAKE--YGITSDDLFSLPY--EPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGF 236 (503)
T ss_pred EEEEecCCCCCC-CCCCcee--eeecccccccccC--CCC-ceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccc
Confidence 999999999965 4665432 2224566555542 355 67899999999999999999999999999974 34789
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEE--EcCCC--cEEeccEEEEeeccccCccc--cccCCceecC
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA--NLDNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNG 296 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v--~~~~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~ 296 (1466)
+.++.+.+.+.|+++||++...+.+..++..++++.... .+..+ .+-++|.|+||+|+.+.+.- |+..|++.|+
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ 316 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNE 316 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecc
Confidence 999999999999999999999888888887666653322 22222 34579999999999998763 5778888865
Q ss_pred C-ccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCc--cccccc-
Q psy2951 297 Q-KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPF--FWTMLF- 369 (1466)
Q Consensus 297 ~-g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~--~~s~~~- 369 (1466)
+ |.|.+|+.-+|++|+|||+||+... +++....|++.|+..|+.+.+.. .+|..+|- |-|-.+
T Consensus 317 ks~KI~v~~~e~t~vp~vyAvGDIl~~----------kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~ 386 (503)
T KOG4716|consen 317 KSGKIPVDDEEATNVPYVYAVGDILED----------KPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYG 386 (503)
T ss_pred cCCccccChHHhcCCCceEEecceecC----------CcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhcc
Confidence 4 7999999999999999999999753 35666789999999999988643 35666663 222221
Q ss_pred ceeeEEEE--eecCCc------------eEEEecccCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCCC
Q psy2951 370 GVGFRFAG--YAAGHT------------QVDIVGDLEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFPY 430 (1466)
Q Consensus 370 ~~~~~~~G--~~~~~~------------~~~~~g~~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~~ 430 (1466)
.+|+..-- ...+.+ ++..-.......+.+.++. +.+|+|++.+|. .++++.++ .++..+.
T Consensus 387 c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfa-aAlk~gl 465 (503)
T KOG4716|consen 387 CVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFA-AALKCGL 465 (503)
T ss_pred ccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHH-HHHHhcc
Confidence 22220000 000111 1122222234556666655 479999999999 67888888 7888887
Q ss_pred cc-----ccccCcccchhhc
Q psy2951 431 SS-----LPHSHRCLGVVLG 445 (1466)
Q Consensus 431 ~~-----~~~~~p~~~e~~~ 445 (1466)
+. ++.+||+.+|.|.
T Consensus 466 t~~~l~ntigIHPt~aE~Ft 485 (503)
T KOG4716|consen 466 TKKDLDNTIGIHPTTAEEFT 485 (503)
T ss_pred cHHHHhhcccccccchhhee
Confidence 75 8999999999983
No 112
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.96 E-value=2e-28 Score=284.76 Aligned_cols=275 Identities=24% Similarity=0.353 Sum_probs=209.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---------CCCCchhhccCcccccccChhhhccCCcEEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---------RVKLSKQLDIKADSILLRTEEFYKDNDIHVI 1137 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1137 (1466)
++|+|||||+||++||..|++.|. +|+|||+++. +.. .|.+... .....+.....+++++++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~-gg~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~gv~~~ 75 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL--KTLIIEGMEP-GGQLTTTTEVENYPGFPEG--ISGPELMEKMKEQAVKFGAEII 75 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEeccCC-CcceeecccccccCCCCCC--CChHHHHHHHHHHHHHcCCeEE
Confidence 479999999999999999999998 8999998762 110 0111100 0112222333456677899998
Q ss_pred cCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEE
Q psy2951 1138 KGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1138 ~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvV 1210 (1466)
. ++|+.+ ++..+ .|.+.++..+.||+||+|||+.|+.+++| |.+ ++++....+. ....+++|+|
T Consensus 76 ~-~~v~~v-~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~------~~~~~~~v~V 146 (300)
T TIGR01292 76 Y-EEVIKV-DLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP-GEDEFLGRGVSYCATCDG------PFFKNKEVAV 146 (300)
T ss_pred E-EEEEEE-EecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC-ChhhcCCccEEEeeecCh------hhcCCCEEEE
Confidence 8 679999 87665 56667778999999999999999988888 754 3433322221 1224789999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEcC--
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLD-- 1287 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~~g~~~~v~l~-- 1287 (1466)
||+|.+|+|+|..|++.+.+|+++.+.+... ....+.+.++++ ||++++++.+++++ .+ +++..+++.
T Consensus 147 iG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------~~~~~~~~l~~~~gv~~~~~~~v~~i~-~~-~~~~~v~~~~~ 217 (300)
T TIGR01292 147 VGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------AEKILLDRLRKNPNIEFLWNSTVKEIV-GD-NKVEGVKIKNT 217 (300)
T ss_pred ECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------cCHHHHHHHHhCCCeEEEeccEEEEEE-cc-CcEEEEEEEec
Confidence 9999999999999999999999999986432 123455666777 99999999999998 33 355455542
Q ss_pred -CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1288 -NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1288 -~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
+| .++++|.|++++|..|+.++++.. +.++.+|++.||++++|++|+||++|||+..+. .+|..|.
T Consensus 218 ~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~----------~~~~~A~ 286 (300)
T TIGR01292 218 VTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY----------RQAVTAA 286 (300)
T ss_pred CCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch----------hhhhhhh
Confidence 23 579999999999999999988877 777888999999999999999999999997421 2347899
Q ss_pred HHHHHHHHHhc
Q psy2951 1365 YHGRIAALNMV 1375 (1466)
Q Consensus 1365 ~qa~~aa~~i~ 1375 (1466)
.||+.||.+|.
T Consensus 287 ~~g~~aa~~i~ 297 (300)
T TIGR01292 287 GDGCIAALSAE 297 (300)
T ss_pred hhHHHHHHHHH
Confidence 99999999986
No 113
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.96 E-value=1.3e-28 Score=302.86 Aligned_cols=284 Identities=25% Similarity=0.357 Sum_probs=215.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-CCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~-~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|. +++||++... .+.....+..... ....++.....+++++++++++.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~--~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL--RTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 346899999999999999999999999 9999975311 1111111111110 112222223345566779999999
Q ss_pred CeEEEeecCCC--CeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEc
Q psy2951 1140 KKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1140 ~~v~~i~d~~~--~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG 1212 (1466)
++|..+ +... ..+.+.+|..+.||+||+|||+.|+.+++| |.+ ++++....+. .+..+++|+|||
T Consensus 288 ~~V~~I-~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ip-G~~~~~~~~v~~~~~~~~------~~~~~k~VvViG 359 (515)
T TIGR03140 288 QRAKKI-ETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVP-GEKEYIGKGVAYCPHCDG------PFFKGKDVAVIG 359 (515)
T ss_pred CEEEEE-EecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCC-CHHHcCCCeEEEeeccCh------hhcCCCEEEEEC
Confidence 999999 7654 456777888999999999999999988888 753 3444332221 223489999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCCC--
Q psy2951 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNG-- 1289 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-- 1289 (1466)
+|++|+|+|..|++.+.+|+++++.+.+.. ...+.+.+++ +||++++++.++++. ++++++..|.+.++
T Consensus 360 gG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~-~~~~~v~~v~~~~~~~ 431 (515)
T TIGR03140 360 GGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIV-GDGDKVTGIRYQDRNS 431 (515)
T ss_pred CcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEE-cCCCEEEEEEEEECCC
Confidence 999999999999999999999998775432 2345566665 699999999999998 45456666776542
Q ss_pred ---CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHH
Q psy2951 1290 ---TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 1366 (1466)
Q Consensus 1290 ---~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~q 1366 (1466)
+++++|.|++++|..|++++++.. +.++.+|+|.||++++|++|+|||+|||+..|... +..|+.|
T Consensus 432 ~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~----------~~~A~~~ 500 (515)
T TIGR03140 432 GEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ----------IIIAMGE 500 (515)
T ss_pred CcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce----------EEEEEcc
Confidence 468999999999999999999876 77887899999999999999999999999876532 1468999
Q ss_pred HHHHHHHhcC
Q psy2951 1367 GRIAALNMVE 1376 (1466)
Q Consensus 1367 a~~aa~~i~g 1376 (1466)
|..||.++.+
T Consensus 501 G~~Aa~~i~~ 510 (515)
T TIGR03140 501 GAKAALSAFD 510 (515)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 114
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=1.1e-28 Score=287.36 Aligned_cols=295 Identities=18% Similarity=0.218 Sum_probs=200.8
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCcc---ch-hcccCcccccccChhhhhcCCeEEEe
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL---SK-QLDIKADSILLRTEEFYKDNDIHVIK 115 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (1466)
+...+||+|||||||||+||..|+++|+++.+++.............. .. ........+..++.+....+++++..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 82 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence 356789999999999999999999999998887643221100000000 00 00122233445556666667777766
Q ss_pred CceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHH
Q psy2951 116 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 195 (1466)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 195 (1466)
+...........+++..+ ...+.||+||+|||+.|+.++ +++.+. +..+.+..+..+......+++++|||+|++|+
T Consensus 83 ~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~-i~g~~~-~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~ 159 (321)
T PRK10262 83 DHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLG-LPSEEA-FKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 159 (321)
T ss_pred eEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCC-CCCHHH-cCCCcEEEeecCCHHHcCCCEEEEECCCHHHH
Confidence 543222222222334332 347899999999999997553 554321 11111111222222234678999999999999
Q ss_pred HHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCC------CcEE
Q psy2951 196 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN------GTTI 269 (1466)
Q Consensus 196 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~------g~~i 269 (1466)
|+|..|++.+++|+++++.+... .++.+.+.+.+.|++.||++++++.+++++.++ ..+..+.+.+ .+++
T Consensus 160 e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i 235 (321)
T PRK10262 160 EEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESL 235 (321)
T ss_pred HHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEE
Confidence 99999999999999999976432 246677888889999999999999999998653 2344444332 2479
Q ss_pred eccEEEEeeccccCccccccCCceecCCccEEECC-----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHH
Q psy2951 270 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 344 (1466)
Q Consensus 270 ~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g 344 (1466)
++|.||+++|++||..++.. ++.++ +|+|.||+ +++|++|+|||+|||++.+. .++..|+.+|
T Consensus 236 ~~D~vv~a~G~~p~~~l~~~-~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~----------~~~~~A~~~g 303 (321)
T PRK10262 236 DVAGLFVAIGHSPNTAIFEG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY----------RQAITSAGTG 303 (321)
T ss_pred ECCEEEEEeCCccChhHhhc-ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCc----------ceEEEEehhH
Confidence 99999999999999997754 46654 58999997 68999999999999986432 2233488899
Q ss_pred HHHHHHhcC
Q psy2951 345 RIAALNMVE 353 (1466)
Q Consensus 345 ~~aa~~i~~ 353 (1466)
..||..+..
T Consensus 304 ~~Aa~~~~~ 312 (321)
T PRK10262 304 CMAALDAER 312 (321)
T ss_pred HHHHHHHHH
Confidence 998888764
No 115
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=5e-29 Score=303.34 Aligned_cols=338 Identities=20% Similarity=0.225 Sum_probs=229.7
Q ss_pred EECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc---cccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 540 FNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM---AKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 540 f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
|..-.|++|..||...+..-. .++.+-+...++.+.+......+ ..+.....++|+||||||||++||..|++
T Consensus 89 ~~~~~g~vC~~~Ce~~C~~~~----~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~ 164 (471)
T PRK12810 89 FPEFTGRVCPAPCEGACTLNI----NFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLAR 164 (471)
T ss_pred hhHHhcCcCCchhHHhccCCC----CCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHh
Confidence 444568888888876422221 24566666666666654322211 12334457899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lv 696 (1466)
+|++ |+++++.+.+++... ..........++.....+++.+.|++++.++.+. . +... +.....||+||
T Consensus 165 ~G~~--V~vie~~~~~GG~l~-~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-~-~~~~------~~~~~~~d~vv 233 (471)
T PRK12810 165 AGHK--VTVFERADRIGGLLR-YGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG-K-DITA------EELLAEYDAVF 233 (471)
T ss_pred CCCc--EEEEecCCCCCceee-ecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC-C-cCCH------HHHHhhCCEEE
Confidence 9988 888888765432111 1000001223344555667888999999999552 2 1111 11135799999
Q ss_pred EcCCCC-CCcCCCCCCCC--cEEEecCHHHHH--hhc------ccCCCCCcEEEECCChHHHHHHHHHhccCC-eEEEEe
Q psy2951 697 LATGSS-PRTISQADGVN--KVFYLRTVEDAN--NIA------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVG 764 (1466)
Q Consensus 697 iAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~--~~~------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~ 764 (1466)
+|||+. ++.++++ |.+ ++++..++.... .+. .....+++|+|||+|++|+|+|..+.++|. +|+++.
T Consensus 234 lAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 234 LGTGAYKPRDLGIP-GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred EecCCCCCCcCCCC-CccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 999997 7788888 765 555432221110 011 112358999999999999999998888874 799776
Q ss_pred ecCccCccccCH----HH-HHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC-----CCC---------cEEecCE
Q psy2951 765 RGAVPFQESLGK----EV-GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL-----DNG---------TTIPADL 825 (1466)
Q Consensus 765 ~~~~~~~~~~~~----~~-~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~-----~~g---------~~i~~D~ 825 (1466)
+.+.+.....+. .. .....+.+++.||+++++..+++|. ++++++..+++ .+| +++++|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~-~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~ 391 (471)
T PRK12810 313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADL 391 (471)
T ss_pred ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE-ccCCEEEEEEEEEEEecCCCccccCCceEEEECCE
Confidence 655433211110 00 1113456778899999999999997 34556654432 222 4799999
Q ss_pred EEEccccccCc-cccccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 826 VIVGIGTVLNT-NYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 826 vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
||+|+|++|+. .+++..+++++++|++.+| ++++|+.|+|||+|||+..+. .+..|+.||+.||.+|
T Consensus 392 VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~-----------~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 392 VLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS-----------LVVWAIAEGRQAARAI 460 (471)
T ss_pred EEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch-----------hHHHHHHHHHHHHHHH
Confidence 99999999985 5888889999989999998 799999999999999987543 2468999999999998
Q ss_pred cc
Q psy2951 904 VE 905 (1466)
Q Consensus 904 ~~ 905 (1466)
..
T Consensus 461 ~~ 462 (471)
T PRK12810 461 DA 462 (471)
T ss_pred HH
Confidence 64
No 116
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=2.3e-28 Score=306.91 Aligned_cols=333 Identities=20% Similarity=0.216 Sum_probs=222.3
Q ss_pred EECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 540 FNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 540 f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
|..-.|+++..||...+. ... .++.+.+...++...+... +...+.+.+...++|+|||||||||+||+.|++
T Consensus 139 ~p~~~grvC~~~Ce~~C~--r~~--~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~ 214 (652)
T PRK12814 139 LPGILGRICPAPCEEACR--RHG--VDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLR 214 (652)
T ss_pred ccceeeCCcCchhhHHHc--CCC--CCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 444457777777764211 111 1233333444444443321 111222334567899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lv 696 (1466)
.|++ |++++++..+++... ........+.++..+..+.+.+.|+++++++.+ .. + +++.+. ...||+||
T Consensus 215 ~G~~--Vtv~e~~~~~GG~l~-~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v-~~-d-----v~~~~~-~~~~DaVi 283 (652)
T PRK12814 215 KGHD--VTIFDANEQAGGMMR-YGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF-GR-D-----ITLEEL-QKEFDAVL 283 (652)
T ss_pred CCCc--EEEEecCCCCCceee-ecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc-cC-c-----cCHHHH-HhhcCEEE
Confidence 9998 778887765432211 100000123344555566778889999999843 22 1 112111 23599999
Q ss_pred EcCCCCC-CcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCC-eEEEEeecCccCcc
Q psy2951 697 LATGSSP-RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQE 772 (1466)
Q Consensus 697 iAtG~~~-~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~ 772 (1466)
||||+.+ ..+++| |.+ +++...++............+++|+|||+|++|+|+|..+.+.|. +|+++++.+...++
T Consensus 284 lAtGa~~~~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp 362 (652)
T PRK12814 284 LAVGAQKASKMGIP-GEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP 362 (652)
T ss_pred EEcCCCCCCCCCCC-CcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 9999875 567788 765 444332222221122234568999999999999999999999985 69999998753333
Q ss_pred ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCce--EEEECC---------------CCc--EEecCEEEEccccc
Q psy2951 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV--TAANLD---------------NGT--TIPADLVIVGIGTV 833 (1466)
Q Consensus 773 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~--~~v~~~---------------~g~--~i~~D~vi~a~G~~ 833 (1466)
..+.+ +.+. .+.||+|+++..+.++... ++.+ ..+.+. +|+ ++++|.||+|+|+.
T Consensus 363 a~~~e----i~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 363 ANRAE----IEEA-LAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred CCHHH----HHHH-HHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 33333 2333 3679999999999998743 2222 222111 122 68999999999999
Q ss_pred cCccccccCCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 834 LNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 834 p~~~~~~~~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
|++++++..|++++.+|++.+|+ +++|+.|+|||+||++..+. .+..|+.||+.||.+|..
T Consensus 437 p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~-----------~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 437 VDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD-----------IAINAVEQGKRAAHAIDL 498 (652)
T ss_pred CCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch-----------HHHHHHHHHHHHHHHHHH
Confidence 99999988899999899999996 68999999999999987654 346899999999999863
No 117
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.96 E-value=6.6e-28 Score=298.46 Aligned_cols=279 Identities=24% Similarity=0.323 Sum_probs=202.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---cchhcc---cCcccccccCHhHhhhCCcEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSKQLD---IKADSILLRTEEFYKDNDIHVIK 667 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~ 667 (1466)
..+||+|||||||||+||..|+++|++ |+++|++.. ++.... ...... ....++..++.+.+++.+++++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~--V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLD--TLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCC--EEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 358999999999999999999999988 788887642 221111 100011 22334555666677788999874
Q ss_pred ceEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEE
Q psy2951 668 GKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 740 (1466)
Q Consensus 668 ~~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVv 740 (1466)
++|..+ +... ..+.+.+ ..+.|++||||||+.|+.|+++ |.+ .+++....+ .....+++|+||
T Consensus 80 -~~V~~i-~~~~~~~~V~~~~-g~~~a~~lVlATGa~p~~~~ip-G~~~~~~~~v~~~~~~~------~~~~~g~~VvVI 149 (555)
T TIGR03143 80 -AEVLDV-DFDGDIKTIKTAR-GDYKTLAVLIATGASPRKLGFP-GEEEFTGRGVAYCATCD------GEFFTGMDVFVI 149 (555)
T ss_pred -cEEEEE-EecCCEEEEEecC-CEEEEeEEEECCCCccCCCCCC-CHHHhCCceEEEEeecC------hhhcCCCEEEEE
Confidence 448777 5443 3455544 4689999999999999999999 754 233322211 123358999999
Q ss_pred CCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE---CCC
Q psy2951 741 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDN 817 (1466)
Q Consensus 741 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~---~~~ 817 (1466)
|||++|+|+|..|++.|.+|+++++.+.... ... ...+.+..+||++++++.++++.. ++.+..+. ..+
T Consensus 150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~---~~~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~ 221 (555)
T TIGR03143 150 GGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKL---IAEKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVT 221 (555)
T ss_pred CCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHH---HHHHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCC
Confidence 9999999999999999999999999875421 222 223334557999999999999983 23333332 345
Q ss_pred CcE----EecCE----EEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 818 GTT----IPADL----VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 818 g~~----i~~D~----vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
|+. +++|. |++++|++|++.+++. +++++++|+|.||++++|+.|+|||+|||+.... ..+
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~----------~~v 290 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL----------RQV 290 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc----------chh
Confidence 653 23676 9999999999998876 5788888999999999999999999999974321 123
Q ss_pred HHHHHHHHHHHHHhc
Q psy2951 890 QLAQYHGRIAALNMV 904 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~ 904 (1466)
..|+.||+.||.+|.
T Consensus 291 ~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 291 VTAVADGAIAATSAE 305 (555)
T ss_pred eeHHhhHHHHHHHHH
Confidence 579999999999985
No 118
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=1.3e-27 Score=301.12 Aligned_cols=323 Identities=20% Similarity=0.236 Sum_probs=215.2
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCcc---cc-ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKL---PM-AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~ 78 (1466)
||...+.+. ++|+.|..++++........ +. .+......++|+|||||||||+||+.|++.|++|+|++..+..
T Consensus 493 ~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 493 QCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred chHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 454444443 89999999999887642211 11 1122345689999999999999999999999998887654432
Q ss_pred CCCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCC
Q psy2951 79 FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 158 (1466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~ 158 (1466)
...... ...... .+.+...+..+++.+.+++++.++... +.+.+.....||+||||||+++..++.++
T Consensus 573 GG~l~~--~IP~~r-lp~e~l~~~ie~l~~~GVe~~~g~~~d---------~~ve~l~~~gYDaVIIATGA~~~~~l~I~ 640 (1012)
T TIGR03315 573 GGVVKN--IIPEFR-ISAESIQKDIELVKFHGVEFKYGCSPD---------LTVAELKNQGYKYVILAIGAWKHGPLRLE 640 (1012)
T ss_pred Cceeee--cccccC-CCHHHHHHHHHHHHhcCcEEEEecccc---------eEhhhhhcccccEEEECCCCCCCCCCCcC
Confidence 111000 000011 112333444566677899998874211 12223334569999999999865444444
Q ss_pred CCCcEEEecCHHHHHhhcc---cCCCCCcEEEECCCHhHHHHHHHHhhC-C-CEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 159 GVNKVFYLRTVEDANNIAP---HITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
+... ..+..++....+.. ....+++|+|||||++|+|+|..+.+. | .+|+++++......+.... .+.+.
T Consensus 641 G~~~-~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e----El~~a 715 (1012)
T TIGR03315 641 GGGE-RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE----ELEEA 715 (1012)
T ss_pred CCCc-ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH----HHHHH
Confidence 4321 12223333333321 234689999999999999999988876 7 4899999876422222223 33333
Q ss_pred HHhCCcEEEcCceEEEEEecC-------------CCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCCccE
Q psy2951 234 FESKGVKFVMKANVSSFEKNE-------------KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAV 300 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~-------------~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i 300 (1466)
+ +.||+++++..+.+++... +++...+..++..++++|.||+|+|+.|+.++++..+++++.+|++
T Consensus 716 l-eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I 794 (1012)
T TIGR03315 716 L-EDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWP 794 (1012)
T ss_pred H-HcCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCE
Confidence 3 4699999988888776210 0111111122224689999999999999999998889999888999
Q ss_pred EECCC-CCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC
Q psy2951 301 VVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356 (1466)
Q Consensus 301 ~vd~~-~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~ 356 (1466)
.||++ ++|+.|+|||+|||+..| .++..|+.+|+.||.+|++...
T Consensus 795 ~VD~~~~~Ts~pgVFAaGD~a~GP-----------~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 795 VVNQATGETNITNVFVIGDANRGP-----------ATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred EeCCCCCccCCCCEEEEeCcCCCc-----------cHHHHHHHHHHHHHHHHhcccc
Confidence 99986 899999999999998643 3567899999999999987543
No 119
>KOG4716|consensus
Probab=99.96 E-value=1.2e-27 Score=248.97 Aligned_cols=362 Identities=22% Similarity=0.288 Sum_probs=241.1
Q ss_pred ccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC----------------CCCCCCCc----cch---
Q psy2951 585 LPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN----------------FLPYDRVK----LSK--- 641 (1466)
Q Consensus 585 ~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~----~~~--- 641 (1466)
.++.....+..+|++|||||.+||+||..++..|.++.++.+-+.. ++|-..+. +..
T Consensus 9 ~~l~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~ 88 (503)
T KOG4716|consen 9 LPLARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALH 88 (503)
T ss_pred cchhhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHH
Confidence 3444455677899999999999999999999999996555443321 11100000 000
Q ss_pred ---hcccCcc--cccccCH-------hHhhhC--CcEEEEce-EE-------EEeccccccEEEccCC--CEEecCEEEE
Q psy2951 642 ---QLDIKAD--SILLRTE-------EFYKDN--DIHVIKGK-KI-------ISDSELNEKKIKLQDG--TSIDFTKIYL 697 (1466)
Q Consensus 642 ---~~~~~~~--~~~~~~~-------~~~~~~--gv~~~~~~-~v-------~~i~~~~~~~v~~~~~--~~~~~d~lvi 697 (1466)
.++...+ .+...+. ...+.. +.++-+.. +| ..+ ++.....+..++ +.++++.++|
T Consensus 89 da~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv-~~h~I~at~~~gk~~~~ta~~fvI 167 (503)
T KOG4716|consen 89 DARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFV-DPHKIKATNKKGKERFLTAENFVI 167 (503)
T ss_pred HHHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeec-ccceEEEecCCCceEEeecceEEE
Confidence 0011111 1211111 111111 22221111 12 222 333333333334 4688999999
Q ss_pred cCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHH
Q psy2951 698 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKE 777 (1466)
Q Consensus 698 AtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~ 777 (1466)
|||.+|+.|+|| |.. -+.-+.+|...+ ...+.+-+|||+|++++|||..|+..|.+||+..|+- +.+.|+.+
T Consensus 168 atG~RPrYp~Ip-G~~--Ey~ITSDDlFsl---~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFDqd 239 (503)
T KOG4716|consen 168 ATGLRPRYPDIP-GAK--EYGITSDDLFSL---PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFDQD 239 (503)
T ss_pred EecCCCCCCCCC-Cce--eeeecccccccc---cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccccHH
Confidence 999999999999 743 112234443322 3347788999999999999999999999999999984 44789999
Q ss_pred HHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC---CCCc--EEecCEEEEccccccCcc--ccccCCceeeC-C
Q psy2951 778 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVLNTN--YLDGKGVELNG-Q 849 (1466)
Q Consensus 778 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~-~ 849 (1466)
+.+.+.+.|+++||+|+....+.+++.-++++. .|.. ..++ +-++|+|+||+|+++.++ -++..|+..|+ .
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks 318 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS 318 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence 999999999999999999988888886666653 2322 2222 457999999999999876 36888999864 5
Q ss_pred CcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeE
Q psy2951 850 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFR 926 (1466)
Q Consensus 850 G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~ 926 (1466)
|.|.+|+.-+|+.|+|||+||+..... ++.+.|++.|+..|+.+++... .|..+|..- +..+...
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp----------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTV--FTPLEy~ 386 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKP----------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTV--FTPLEYG 386 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCc----------ccchhhhhhchHHHHHHhcCcceeeeccCCceee--ecchhcc
Confidence 899999999999999999999976432 3457899999999999997543 466666321 2222333
Q ss_pred EeeccCC-------CC------------ceeEecccccceEEEEEe---cCCeEEEEEeecCch
Q psy2951 927 FAGYAAG-------HT------------QVDIVGDLEALKFTAYYS---NADKVLAILTVGMDP 968 (1466)
Q Consensus 927 ~~g~~~~-------~~------------~~~~~~~~~~~~~~~~~~---~~~~i~g~~~~g~~~ 968 (1466)
..|++++ .+ +..+........|.|.+| ++.+++|.+++|++.
T Consensus 387 c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnA 450 (503)
T KOG4716|consen 387 CVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNA 450 (503)
T ss_pred ccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCch
Confidence 4454431 01 111222222345788888 689999999999984
No 120
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.96 E-value=2.5e-27 Score=291.97 Aligned_cols=282 Identities=26% Similarity=0.373 Sum_probs=215.4
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC---CCCchhh---ccCcccccccChhhhccCCcEEE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---VKLSKQL---DIKADSILLRTEEFYKDNDIHVI 1137 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~---~~l~~~~---~~~~~~~~~~~~~~~~~~~v~~~ 1137 (1466)
...++++|||||+||++||..|++.|. +++||++. ++... ..+.... .....++.....+.+++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~--~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI--RTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC--cEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 346799999999999999999999998 99999764 11111 0000000 01222333333456677899999
Q ss_pred cCCeEEEeecCC--CCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEE
Q psy2951 1138 KGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1138 ~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvV 1210 (1466)
.+++|..+ +.. .+.|.+.++..+.||.||+|||++++.+++| |.+ ++++....+. ....+++|+|
T Consensus 285 ~~~~V~~I-~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ip-G~~~~~~~~v~~~~~~~~------~~~~gk~VvV 356 (517)
T PRK15317 285 NLQRASKL-EPAAGLIEVELANGAVLKAKTVILATGARWRNMNVP-GEDEYRNKGVAYCPHCDG------PLFKGKRVAV 356 (517)
T ss_pred cCCEEEEE-EecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCC-CHHHhcCceEEEeeccCc------hhcCCCEEEE
Confidence 99999999 775 4467778888999999999999999998888 753 4444322221 1235899999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCC-
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN- 1288 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~- 1288 (1466)
||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+.+ .||++++++.++++. .+++++..+.+.+
T Consensus 357 VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~~~~gI~i~~~~~v~~i~-~~~g~v~~v~~~~~ 428 (517)
T PRK15317 357 IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLRSLPNVTIITNAQTTEVT-GDGDKVTGLTYKDR 428 (517)
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHhcCCCcEEEECcEEEEEE-cCCCcEEEEEEEEC
Confidence 99999999999999999999999998875432 1344555554 699999999999998 5556776676643
Q ss_pred --C--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1289 --G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1289 --g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
| +++++|.|++++|..|+++|++.. +.++.+|+|.+|++++|++|+|||+|||+..+... +..|+
T Consensus 429 ~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~----------~~~A~ 497 (517)
T PRK15317 429 TTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQ----------IIIAM 497 (517)
T ss_pred CCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCE----------EEEhh
Confidence 3 358999999999999999999876 78888899999999999999999999999876432 15688
Q ss_pred HHHHHHHHHhcC
Q psy2951 1365 YHGRIAALNMVE 1376 (1466)
Q Consensus 1365 ~qa~~aa~~i~g 1376 (1466)
.+|..||.++..
T Consensus 498 ~eG~~Aa~~~~~ 509 (517)
T PRK15317 498 GEGAKAALSAFD 509 (517)
T ss_pred hhHHHHHHHHHH
Confidence 999999988764
No 121
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=2.2e-27 Score=279.06 Aligned_cols=286 Identities=20% Similarity=0.249 Sum_probs=202.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
..++|+|||||+||+++|..|++.|++ |+++++.+.+.+............ .+......+.+.+.+++++.++.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~~gg~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE--VHVYDKLPEPGGLMLFGIPEFRIP-IERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc--EEEEeCCCCCCceeeecCcccccC-HHHHHHHHHHHHhCCeEEecCcEEee
Confidence 468999999999999999999999987 888888765442211100000011 12223334456667999999987754
Q ss_pred eccc-----cc----cEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhcc---------c--
Q psy2951 674 DSEL-----NE----KKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP---------H-- 730 (1466)
Q Consensus 674 i~~~-----~~----~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~~---------~-- 730 (1466)
+ +. .. ..+..+ +..+.||+||||||+ .++.|++| |.+ +++.. .+....+.. .
T Consensus 94 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ip-g~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T PRK12770 94 G-EPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIP-GEDLPGVYSA--LEYLFRIRAAKLGYLPWEKVP 168 (352)
T ss_pred c-cccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCC-CccccCceeH--HHHHHHhhhcccccccccccc
Confidence 4 21 01 111111 224789999999999 58888888 766 34332 222221111 0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhccCCe-EEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCc
Q psy2951 731 ITPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809 (1466)
Q Consensus 731 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 809 (1466)
...+++++|||+|++|+|+|..|.+.|.+ |+++.+.+.... .. .....+.|+++||+++++..+++++. + ++
T Consensus 169 ~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~-~~----~~~~~~~l~~~gi~i~~~~~v~~i~~-~-~~ 241 (352)
T PRK12770 169 PVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA-PA----GKYEIERLIARGVEFLELVTPVRIIG-E-GR 241 (352)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC-CC----CHHHHHHHHHcCCEEeeccCceeeec-C-Cc
Confidence 11368999999999999999999988886 999998753211 11 13344568899999999999999873 2 33
Q ss_pred eEEEEC--------------------CCCcEEecCEEEEccccccCcccccc-CCceeeCCCcEEeCCCCCCCCCCeEEe
Q psy2951 810 VTAANL--------------------DNGTTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAG 868 (1466)
Q Consensus 810 ~~~v~~--------------------~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~~~~iya~ 868 (1466)
+..+.+ .+++++++|.||+++|++|++.+... +|++++++|++.+|++++|+.|+|||+
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyai 321 (352)
T PRK12770 242 VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAA 321 (352)
T ss_pred EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEE
Confidence 333321 23457999999999999999888776 889998889999999999999999999
Q ss_pred ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 869 GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
|||+..+.. +..|+.||+.||.+|..
T Consensus 322 GD~~~~~~~-----------~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 322 GDVVTGPSK-----------IGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cccccCcch-----------HHHHHHHHHHHHHHHHH
Confidence 999875442 36899999999999864
No 122
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=9.4e-28 Score=290.53 Aligned_cols=335 Identities=19% Similarity=0.221 Sum_probs=227.1
Q ss_pred eEECCCCeeec--CCCCCCCCeEEEEEEcCeEEEEEcccchhcccccc---ccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIED--FPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRK---LPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~--~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-.|++|. .||...+.. .. .+..+-+...++.+.++... .+...+.+.+.++|+|||||||||++|..
T Consensus 84 p~~~~~grvC~~~~~Ce~~C~~--~~--~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 84 TLPEICGRVCPQDRLCEGACTL--ND--EFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred CchHhhcccCCCCCChHHhCcC--CC--CCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 34445577775 477753222 11 24556666666666554322 11111223467899999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|+++|++ |+++++.+.+++.. ...........++..+..+++++.|++++.++.+... +.+++ ....||
T Consensus 160 l~~~G~~--V~i~e~~~~~gG~l-~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-~~~~~D 228 (467)
T TIGR01318 160 LARAGVQ--VVVFDRHPEIGGLL-TFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-------ISLDD-LLEDYD 228 (467)
T ss_pred HHHcCCe--EEEEecCCCCCcee-eecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-------cCHHH-HHhcCC
Confidence 9999988 77788776543211 1111101123345556667888899999999866321 11111 124799
Q ss_pred EEEEcCCCCC-CcCCCCCCCC--cEEEecCHHH--HHhhcc---------cCCCCCcEEEECCChHHHHHHHHHhccC-C
Q psy2951 694 KIYLATGSSP-RTISQADGVN--KVFYLRTVED--ANNIAP---------HITPESNVVVIGSSFIGMEAAAFCASKV-K 758 (1466)
Q Consensus 694 ~lviAtG~~~-~~~~~~~g~~--~~~~~~~~~~--~~~~~~---------~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~ 758 (1466)
+||+|||+.+ ..++++ |.+ +++....+.. ...+.. ....+++++|||+|++|+++|..+.++| .
T Consensus 229 ~vilAtGa~~~~~~~i~-g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~ 307 (467)
T TIGR01318 229 AVFLGVGTYRSMRGGLP-GEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAA 307 (467)
T ss_pred EEEEEeCCCCCCcCCCC-CcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 9999999986 456787 766 5554322111 100100 0124799999999999999999999998 4
Q ss_pred eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC--------------------CCC
Q psy2951 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNG 818 (1466)
Q Consensus 759 ~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~--------------------~~g 818 (1466)
+||+++|.+...++....+ .+.+++.||++++++.++++..++++++..+++ .+.
T Consensus 308 ~Vtvv~r~~~~~~~~~~~e-----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 382 (467)
T TIGR01318 308 SVTCAYRRDEANMPGSRRE-----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE 382 (467)
T ss_pred eEEEEEecCcccCCCCHHH-----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCce
Confidence 7999999775332333222 244678899999999999997444455544433 112
Q ss_pred cEEecCEEEEccccccCc-cccccCCceeeCCCcEEeC----CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVN----EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd----~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
.++++|.||+++|++|+. .+++..+++++++|++.+| ++++|+.|+|||+|||+..+.. +..|+
T Consensus 383 ~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~-----------~~~Ai 451 (467)
T TIGR01318 383 FVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADL-----------VVTAV 451 (467)
T ss_pred EEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccH-----------HHHHH
Confidence 379999999999999984 5777888999889999999 6789999999999999876543 36899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|+.||.+|..
T Consensus 452 ~~G~~aA~~i~~ 463 (467)
T TIGR01318 452 AEGRQAAQGILD 463 (467)
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 123
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=1.7e-27 Score=301.19 Aligned_cols=335 Identities=18% Similarity=0.235 Sum_probs=229.3
Q ss_pred eEECCCCeeec--CCCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIED--FPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~--~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-+|+++. .||..... .. ..++.+.+...++.+.+... +.+.....+.+.++|+|||||||||+||..
T Consensus 270 p~p~~~grvCp~~~~Ce~~C~--~~--~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 270 SLPEITGRVCPQDRLCEGACT--LR--DEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred CchhHhcccCCCCCChHHhcc--CC--CCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence 44555788875 36765322 11 13557777777777766543 222111223467899999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|++.|++ |+++|+.+.+++... ..........+++.+..+++++.|++++.++.+.. + +.+.+ ....||
T Consensus 346 L~~~G~~--V~V~E~~~~~GG~l~-~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--~-----i~~~~-~~~~~D 414 (654)
T PRK12769 346 LARNGVA--VTVYDRHPEIGGLLT-FGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--D-----ISLES-LLEDYD 414 (654)
T ss_pred HHHCCCe--EEEEecCCCCCceee-ecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC--c-----CCHHH-HHhcCC
Confidence 9999998 778887765443211 11011112334555566778888999999986531 1 11111 123699
Q ss_pred EEEEcCCCC-CCcCCCCCCCC--cEEEecCH-----HHHHhhcc------cCCCCCcEEEECCChHHHHHHHHHhccCC-
Q psy2951 694 KIYLATGSS-PRTISQADGVN--KVFYLRTV-----EDANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKVK- 758 (1466)
Q Consensus 694 ~lviAtG~~-~~~~~~~~g~~--~~~~~~~~-----~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~- 758 (1466)
+||+|||+. +..++++ |.+ +++..... .....+.. ....+++|+|||+|++|+++|..+.++|.
T Consensus 415 avilAtGa~~~~~l~i~-g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~ 493 (654)
T PRK12769 415 AVFVGVGTYRSMKAGLP-NEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGAS 493 (654)
T ss_pred EEEEeCCCCCCCCCCCC-CCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCC
Confidence 999999985 4466777 765 55432111 11111110 01357999999999999999998888875
Q ss_pred eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC---------CCC-----------
Q psy2951 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---------DNG----------- 818 (1466)
Q Consensus 759 ~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~---------~~g----------- 818 (1466)
+|+++++.+...++..+. ..+.+++.||+++++..++++..++++++..+++ .+|
T Consensus 494 ~Vt~i~~~~~~~~~~~~~-----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 494 NVTCAYRRDEANMPGSKK-----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred eEEEeEecCCCCCCCCHH-----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 799999876543333222 2355788999999999999997444566655543 112
Q ss_pred cEEecCEEEEccccccCc-cccccCCceeeCCCcEEeCC----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
.++++|+||+|+|+.|+. .+++..+++++++|.|.+|+ +++|+.|+|||+||++..+.. +..|+
T Consensus 569 ~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~-----------vv~Ai 637 (654)
T PRK12769 569 FVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADL-----------VVTAM 637 (654)
T ss_pred EEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcH-----------HHHHH
Confidence 269999999999999985 57888899999999999985 489999999999999876543 36899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|+.||.+|..
T Consensus 638 ~~Gr~AA~~I~~ 649 (654)
T PRK12769 638 AEGRHAAQGIID 649 (654)
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 124
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.95 E-value=4.1e-27 Score=302.05 Aligned_cols=283 Identities=25% Similarity=0.276 Sum_probs=207.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC-CCchhhccCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++|+|||||||||+||..|++.|+ +|||||+++.++.... -++. + ..+.++..+..+.++..|++|+.++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~--~VtVfE~~~~~GG~l~yGIP~-~-rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF--PVTVFEAFHDLGGVLRYGIPE-F-RLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCCCCceEEccCCC-C-cChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 46899999999999999999999999 9999999875442210 0000 0 1112222333456777899999887332
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhcc----------cCCCCeEEE
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAPH----------ITPESNVVV 1210 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~----------~~~~~~vvV 1210 (1466)
+.+++++.....||+|+||||+ .|+.+++| |.+ +|+...++.+...+... ...+|+|+|
T Consensus 381 -------~dit~~~l~~~~yDAV~LAtGA~~pr~l~Ip-G~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvV 452 (944)
T PRK12779 381 -------KTATLEDLKAAGFWKIFVGTGAGLPTFMNVP-GEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFV 452 (944)
T ss_pred -------cEEeHHHhccccCCEEEEeCCCCCCCcCCCC-CCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEE
Confidence 3367776666789999999999 69999999 876 78876555444332211 124799999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCc-CCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC-C-CcEEEEEc-
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAV-PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-K-NDVTAANL- 1286 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~-~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~-~-g~~~~v~l- 1286 (1466)
||+|++|+++|..+.+.|++|+++++.+. .++ . ....+.. ..+.||+++.+..++++. ++ + +++..+++
T Consensus 453 IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-a----~~~e~~~-a~eeGV~~~~~~~p~~i~-~d~~~~~V~~v~~~ 525 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-A----RVEELHH-ALEEGINLAVLRAPREFI-GDDHTHFVTHALLD 525 (944)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEecCccccc-c----cHHHHHH-HHHCCCEEEeCcceEEEE-ecCCCCEEEEEEEE
Confidence 99999999999999999999999998753 222 1 1122333 346799999999999997 33 2 24544432
Q ss_pred --------C--------CC--CeeecCEEEEeeccccCccccc-cCCceeeCCCeEEeCC-CccccCCCEEEecccccCC
Q psy2951 1287 --------D--------NG--TTIPADLVIVGIGTVLNTNYLD-GKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1287 --------~--------~g--~~i~~D~vv~a~G~~p~~~~~~-~~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p 1346 (1466)
. +| .+++||.||+|+|..|+..+.. ..|+..+.+|.|.||+ +++|+.|+|||+|||+..+
T Consensus 526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 1 22 3589999999999999975433 3578888889999995 6899999999999998765
Q ss_pred CccCCCceeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1347 LHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1347 ~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
... ..|+.+|+.||.+|...
T Consensus 606 ~~v-----------v~Ai~eGr~AA~~I~~~ 625 (944)
T PRK12779 606 STA-----------IRAAGDGQAAAKEIVGE 625 (944)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHH
Confidence 443 67999999999999863
No 125
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=4.2e-27 Score=276.75 Aligned_cols=285 Identities=20% Similarity=0.275 Sum_probs=203.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC-CchhhccCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++|+|||+|++|+++|..|++.|. +|++||+.+.+...... +... ..+.+.+ ....+.+.+.+++++.++.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~-~~~~~~~-~~~~~~l~~~~i~~~~~~~v~ 92 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY--EVHVYDKLPEPGGLMLFGIPEF-RIPIERV-REGVKELEEAGVVFHTRTKVC 92 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCCCCCceeeecCccc-ccCHHHH-HHHHHHHHhCCeEEecCcEEe
Confidence 45789999999999999999999998 99999998765421100 0000 0011111 112233455699999998776
Q ss_pred EeecCC---------CCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhcc---------c
Q psy2951 1144 SDSELN---------EKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAPH---------I 1202 (1466)
Q Consensus 1144 ~i~d~~---------~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~---------~ 1202 (1466)
.+ +.. .+.+..++ ..+.||+||||||+ .|+.|++| |.+ +++.. .+....+... .
T Consensus 93 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~d~lviAtGs~~~~~~~ip-g~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~ 167 (352)
T PRK12770 93 CG-EPLHEEEGDEFVERIVSLEE-LVKKYDAVLIATGTWKSRKLGIP-GEDLPGVYSA--LEYLFRIRAAKLGYLPWEKV 167 (352)
T ss_pred ec-cccccccccccccccCCHHH-HHhhCCEEEEEeCCCCCCcCCCC-CccccCceeH--HHHHHHhhhccccccccccc
Confidence 55 330 11112222 24789999999999 58888898 876 55543 2333222211 1
Q ss_pred --CCCCeEEEEcCCHHHHHHHHHHhcCCCe-EEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q psy2951 1203 --TPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279 (1466)
Q Consensus 1203 --~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g 1279 (1466)
..+++++|||+|++|+|+|..|.+.|.+ |+++++.+.... .....+.+.++++||+++++..+.+++ .+ +
T Consensus 168 ~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~-----~~~~~~~~~l~~~gi~i~~~~~v~~i~-~~-~ 240 (352)
T PRK12770 168 PPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA-----PAGKYEIERLIARGVEFLELVTPVRII-GE-G 240 (352)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC-----CCCHHHHHHHHHcCCEEeeccCceeee-cC-C
Confidence 1268999999999999999999988987 999998653211 111334456889999999999999997 33 3
Q ss_pred cEEEEEc--------------------CCCCeeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCCccccCCCEEE
Q psy2951 1280 DVTAANL--------------------DNGTTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYA 1338 (1466)
Q Consensus 1280 ~~~~v~l--------------------~~g~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~~~~v~a 1338 (1466)
++..|++ .+++++++|.|++++|..|++.++.+ .|+.++.+|++.||++++|+.|+|||
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vya 320 (352)
T PRK12770 241 RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFA 320 (352)
T ss_pred cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEE
Confidence 4444442 12357999999999999999888776 88988888899999999999999999
Q ss_pred ecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1339 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1339 ~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+|||+..|... ..|..||+.||.+|..
T Consensus 321 iGD~~~~~~~~-----------~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 321 AGDVVTGPSKI-----------GKAIKSGLRAAQSIHE 347 (352)
T ss_pred EcccccCcchH-----------HHHHHHHHHHHHHHHH
Confidence 99998765543 7899999999999864
No 126
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.95 E-value=6.1e-27 Score=285.14 Aligned_cols=318 Identities=24% Similarity=0.305 Sum_probs=214.9
Q ss_pred cce-eee-ccCcchhhhhhhhhhhcccCccccc--cCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--
Q psy2951 6 CYK-VTI-QNDDSVVVQARKDELKNKKRKLPMA--KLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-- 79 (1466)
Q Consensus 6 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-- 79 (1466)
|.. |.+ ..++|+.|..++++........... ...+...++|+||||||||+++|..|++.|+++.|++..+...
T Consensus 99 C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~ 178 (457)
T PRK11749 99 CEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL 178 (457)
T ss_pred HHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcE
Confidence 555 443 3377899998888766442221111 1223456899999999999999999999999887765443211
Q ss_pred CCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCC
Q psy2951 80 LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQAD 158 (1466)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~ 158 (1466)
..+..+.. ....++..+..+++++.+++++.++.+.. .+.+.+. .+.||+||+|||+. |+.+ .++
T Consensus 179 l~~gip~~-----~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-------~v~~~~~-~~~~d~vvlAtGa~~~~~~-~i~ 244 (457)
T PRK11749 179 LRYGIPEF-----RLPKDIVDREVERLLKLGVEIRTNTEVGR-------DITLDEL-RAGYDAVFIGTGAGLPRFL-GIP 244 (457)
T ss_pred eeccCCCc-----cCCHHHHHHHHHHHHHcCCEEEeCCEECC-------ccCHHHH-HhhCCEEEEccCCCCCCCC-CCC
Confidence 11111110 11234445556677888999998886521 1222222 26799999999996 5543 344
Q ss_pred CCC--cEEEecCHHHHHhh---cccCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcccccccCHHHHHHHHH
Q psy2951 159 GVN--KVFYLRTVEDANNI---APHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITK 232 (1466)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~---~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~~~~l~~ 232 (1466)
+.+ +++........... ...+..+++|+|||+|++|+|+|..+.+.|. +|+++++.+....+.. . ...+
T Consensus 245 G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-~----~~~~ 319 (457)
T PRK11749 245 GENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS-E----EEVE 319 (457)
T ss_pred CccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-H----HHHH
Confidence 432 33332111111111 0223367899999999999999999999987 8999998653221111 1 2345
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCCeEEEEc-------------------CCCcEEeccEEEEeeccccCccccc-cCCc
Q psy2951 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANL-------------------DNGTTIPADLVIVGIGTVLNTNYLD-GKGV 292 (1466)
Q Consensus 233 ~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~-------------------~~g~~i~~D~Vi~a~G~~p~~~~l~-~~gl 292 (1466)
.+++.||++++++.+.++..+++ .+..+.+ .+++++++|.||+|+|++|+..++. ..++
T Consensus 320 ~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl 398 (457)
T PRK11749 320 HAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGL 398 (457)
T ss_pred HHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCc
Confidence 67889999999999999976542 2222221 2335799999999999999988764 5678
Q ss_pred eecCCccEEECC-CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCC
Q psy2951 293 ELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 293 ~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 354 (1466)
+++++|+|.||+ +++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...
T Consensus 399 ~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~-----------~~~~~A~~~G~~aA~~I~~~ 450 (457)
T PRK11749 399 ELNRWGTIIADDETGRTSLPGVFAGGDIVTGA-----------ATVVWAVGDGKDAAEAIHEY 450 (457)
T ss_pred cCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc-----------hHHHHHHHHHHHHHHHHHHH
Confidence 888889999998 7899999999999998532 35678999999999998743
No 127
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.95 E-value=1.1e-26 Score=287.50 Aligned_cols=279 Identities=24% Similarity=0.341 Sum_probs=203.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchh--hc----cCcccccccChhhhccCCcEEEc
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LD----IKADSILLRTEEFYKDNDIHVIK 1138 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~ 1138 (1466)
..++|+|||||+||++||..|++.|+ +|+|||++.. +......+.. +. .....+.....+..+..+++++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~--~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~- 78 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL--DTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL- 78 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-
Confidence 35799999999999999999999998 9999998643 2211100000 00 0111222222334556789986
Q ss_pred CCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEE
Q psy2951 1139 GKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 1211 (1466)
Q Consensus 1139 ~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVv 1211 (1466)
.++|+.+ +...+ .|.+.++ .+.|++||||||+.|+.+++| |.+ ++++....+. ....+++|+||
T Consensus 79 ~~~V~~i-~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ip-G~~~~~~~~v~~~~~~~~------~~~~g~~VvVI 149 (555)
T TIGR03143 79 QAEVLDV-DFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFP-GEEEFTGRGVAYCATCDG------EFFTGMDVFVI 149 (555)
T ss_pred ccEEEEE-EecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCC-CHHHhCCceEEEEeecCh------hhcCCCEEEEE
Confidence 5569999 87653 4666555 689999999999999999999 854 4555433222 12248999999
Q ss_pred cCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---cCC
Q psy2951 1212 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDN 1288 (1466)
Q Consensus 1212 G~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~ 1288 (1466)
|+|++|+|+|..|++.|.+|+++++.+.... .... ..+.++.+||++++++.|+++. ++ +.+..+. ..+
T Consensus 150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~-~~-~~v~~v~~~~~~~ 221 (555)
T TIGR03143 150 GGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEAT-GD-DGLRYAKFVNNVT 221 (555)
T ss_pred CCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEE-cC-CcEEEEEEEECCC
Confidence 9999999999999999999999999875421 2222 2333456799999999999998 33 3443333 346
Q ss_pred CCee----ecCE----EEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecH
Q psy2951 1289 GTTI----PADL----VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360 (1466)
Q Consensus 1289 g~~i----~~D~----vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~ 1360 (1466)
|++. ++|. |++++|..|++++++. ++.++.+|+|.||++++|+.|+|||+|||+... ..+|
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~----------~~~v 290 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKE----------LRQV 290 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCC----------cchh
Confidence 7543 4676 9999999999998875 688888899999999999999999999997421 1234
Q ss_pred HHHHHHHHHHHHHhc
Q psy2951 1361 QLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1361 ~~A~~qa~~aa~~i~ 1375 (1466)
..|..||+.||.+|.
T Consensus 291 ~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 291 VTAVADGAIAATSAE 305 (555)
T ss_pred eeHHhhHHHHHHHHH
Confidence 679999999999986
No 128
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=4.6e-27 Score=302.23 Aligned_cols=281 Identities=26% Similarity=0.354 Sum_probs=210.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCCCchhhccCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++ |..|.. ..+..+..+..+++.+.|++++.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~-----rlp~~~~~~~~~~l~~~gv~~~~~ 501 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY--DVTVFEALHEIGGVLKYGIPEF-----RLPKKIVDVEIENLKKLGVKFETD 501 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCC-----CCCHHHHHHHHHHHHHCCCEEECC
Confidence 456799999999999999999999999 999999876533 211110 011122223345677789999998
Q ss_pred CeEEEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhc--------ccCCCCeE
Q psy2951 1140 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP--------HITPESNV 1208 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~--------~~~~~~~v 1208 (1466)
+.+. +.+.+++.....||+||||||+ .|+.+++| |.+ ++++..++.+...+.. ....+++|
T Consensus 502 ~~v~-------~~v~~~~l~~~~ydavvlAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~V 573 (752)
T PRK12778 502 VIVG-------KTITIEELEEEGFKGIFIASGAGLPNFMNIP-GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKV 573 (752)
T ss_pred CEEC-------CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcE
Confidence 7431 2355555556779999999999 69999999 876 7777665444333221 12357999
Q ss_pred EEEcCCHHHHHHHHHHhcCCCe-EEEEcCCCcC-CcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1209 VVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVP-FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~g~~-v~vv~~~~~~-~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
+|||+|++|+|+|..+.+.|.+ |+++++.+.. ++ ....+ + +.+++.||++++++.+.++...+++++..|++
T Consensus 574 vVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~----~~~~e-~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~ 647 (752)
T PRK12778 574 AVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMP----ARLEE-V-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVL 647 (752)
T ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCC----CCHHH-H-HHHHHcCCEEEecCcceEEEECCCCEEEEEEE
Confidence 9999999999999999999987 9999987642 22 11111 1 34678899999999999987334566666654
Q ss_pred C---------CC-----------CeeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCCccccCCCEEEecccccC
Q psy2951 1287 D---------NG-----------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 1345 (1466)
Q Consensus 1287 ~---------~g-----------~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~ 1345 (1466)
. +| .+++||.||+|+|..|+..++.. .|+.++.+|+|.||++++|+.|+|||+|||+..
T Consensus 648 ~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g 727 (752)
T PRK12778 648 QKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727 (752)
T ss_pred EEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCC
Confidence 2 22 25899999999999999887765 488888889999999999999999999999876
Q ss_pred CCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1346 PLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1346 p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+.. +..|+.||+.||.+|..
T Consensus 728 ~~~-----------vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 728 GAT-----------VILAMGDGKRAAAAIDE 747 (752)
T ss_pred cHH-----------HHHHHHHHHHHHHHHHH
Confidence 543 37899999999999863
No 129
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=2.7e-27 Score=287.55 Aligned_cols=338 Identities=21% Similarity=0.248 Sum_probs=220.8
Q ss_pred EECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc---cccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 540 FNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM---AKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 540 f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
|..-.|++|..||...+..-. .+..+-+...++...+......+ ..+.+...++|+||||||||++||..|++
T Consensus 89 ~p~~~grvC~~~Ce~~C~~~~----~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~ 164 (485)
T TIGR01317 89 FPEFTGRVCPAPCEGACTLGI----SEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNR 164 (485)
T ss_pred chhHHhCcCChhhHHhccCCC----CCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHH
Confidence 344567777777765322111 13344455555554443221111 11223456899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCC-ccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~l 695 (1466)
.|++ |+++++.+.+++... .+. .+ ....++..+..+++++.|++++.++.+.. +... +.....||+|
T Consensus 165 ~g~~--V~v~e~~~~~gG~l~~gip-~~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~--~~~~------~~~~~~~d~V 232 (485)
T TIGR01317 165 AGHT--VTVFEREDRCGGLLMYGIP-NM-KLDKAIVDRRIDLLSAEGIDFVTNTEIGV--DISA------DELKEQFDAV 232 (485)
T ss_pred cCCe--EEEEecCCCCCceeeccCC-Cc-cCCHHHHHHHHHHHHhCCCEEECCCEeCC--ccCH------HHHHhhCCEE
Confidence 9987 888887764332111 000 00 11223455556778889999999996631 1111 1123579999
Q ss_pred EEcCCCC-CCcCCCCCCCC--cEEEecCH-HHHHh---------hcccCCCCCcEEEECCChHHHHHHHHHhccC-CeEE
Q psy2951 696 YLATGSS-PRTISQADGVN--KVFYLRTV-EDANN---------IAPHITPESNVVVIGSSFIGMEAAAFCASKV-KSVT 761 (1466)
Q Consensus 696 viAtG~~-~~~~~~~~g~~--~~~~~~~~-~~~~~---------~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~~V~ 761 (1466)
|+|||+. |+.++++ |.+ ++++.... .+... +......+|+|+|||+|++|+|+|..+.+++ .+|+
T Consensus 233 ilAtGa~~~~~l~i~-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~ 311 (485)
T TIGR01317 233 VLAGGATKPRDLPIP-GRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVH 311 (485)
T ss_pred EEccCCCCCCcCCCC-CcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 9999997 8889999 866 56543222 11111 0111235899999999999999987777665 6899
Q ss_pred EEeecCccCcccc--------CH--HHHHHHHHHHHhcCcEE-EccceEEEEEecCCCceEEEEC--------CCC----
Q psy2951 762 VVGRGAVPFQESL--------GK--EVGERITKLFESKGVKF-VMKANVSSFEKNEKNDVTAANL--------DNG---- 818 (1466)
Q Consensus 762 lv~~~~~~~~~~~--------~~--~~~~~~~~~l~~~gv~~-~~~~~v~~i~~~~~~~~~~v~~--------~~g---- 818 (1466)
++++.+..+.... +. +....+++..+..||.+ +++..+.+|..++++++..+.+ ++|
T Consensus 312 vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p 391 (485)
T TIGR01317 312 QFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQF 391 (485)
T ss_pred EEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccc
Confidence 9998775432111 01 12223444444567654 5677788886433355555442 123
Q ss_pred -------cEEecCEEEEccccc-cCccccccCCceeeCCCcEEe-CCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 819 -------TTIPADLVIVGIGTV-LNTNYLDGKGVELNGQKAVVV-NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 819 -------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~~~G~i~v-d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
.++++|.||+|+|+. |++.+++..+++++++|++.+ |++++|+.|+|||+|||+..+.. .
T Consensus 392 ~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~-----------~ 460 (485)
T TIGR01317 392 VEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSL-----------I 460 (485)
T ss_pred eecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHH-----------H
Confidence 279999999999996 888899988999888898854 57899999999999999865432 3
Q ss_pred HHHHHHHHHHHHHhcc
Q psy2951 890 QLAQYHGRIAALNMVE 905 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~~ 905 (1466)
..|+.+|+.||.+|..
T Consensus 461 ~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 461 VWAINEGRKAAAAVDR 476 (485)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999864
No 130
>KOG2495|consensus
Probab=99.94 E-value=1e-26 Score=252.06 Aligned_cols=296 Identities=21% Similarity=0.312 Sum_probs=235.8
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhC--CcEEE
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN--DIHVI 666 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--gv~~~ 666 (1466)
+....+++|||+|.|.+|.+.+..|-..-++ |+++++.+++-|.+...+...+ ....++.+......... +++++
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts~Yd--V~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~ 127 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTSLYD--VTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL 127 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhccccccc--eEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE
Confidence 4456689999999999999999999887777 9999999998887766665555 56667777777666555 56666
Q ss_pred EceEEEEeccccccEEEcc----CC----CEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccC------
Q psy2951 667 KGKKIISDSELNEKKIKLQ----DG----TSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHI------ 731 (1466)
Q Consensus 667 ~~~~v~~i~~~~~~~v~~~----~~----~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~------ 731 (1466)
... ...+ |+++++|++. ++ ..+.||+||+|+|+.+..+.+| |.. +.+.++.++++++++..+
T Consensus 128 eAe-c~~i-Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgip-GV~e~~~FLKEv~dAqeIR~~~~~~le~ 204 (491)
T KOG2495|consen 128 EAE-CTKI-DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIP-GVEENAHFLKEVEDAQEIRRKVIDNLEK 204 (491)
T ss_pred ecc-cEee-cccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCC-chhhchhhhhhhhHHHHHHHHHHHHHHH
Confidence 655 6778 8988887764 33 4789999999999999999999 876 778888999998874332
Q ss_pred -----------CCCCcEEEECCChHHHHHHHHHhcc--------------CCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 732 -----------TPESNVVVIGSSFIGMEAAAFCASK--------------VKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 732 -----------~~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
.+--++||||||++|+|+|.+|+.. -.+||+++..+..+ ..|+..+.++.++.+
T Consensus 205 a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-~mFdkrl~~yae~~f 283 (491)
T KOG2495|consen 205 AELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-NMFDKRLVEYAENQF 283 (491)
T ss_pred hhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-HHHHHHHHHHHHHHh
Confidence 0123699999999999999888642 36799999998777 689999999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccccccCCceeeCCC--cEEeCCCCCC-C
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK--AVVVNEYLET-N 861 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G--~i~vd~~~~t-~ 861 (1466)
.+.||++.+++.|+.+++. + ..+...+| ++|++-+++|+||..|. ++.+.+.-.+++.| .+.+|++||. +
T Consensus 284 ~~~~I~~~~~t~Vk~V~~~-~---I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G 358 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVTEK-T---IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKG 358 (491)
T ss_pred hhccceeecccEEEeecCc-E---EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccC
Confidence 9999999999999999732 1 24444555 48999999999999887 45555444556666 8999999996 6
Q ss_pred CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 862 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 862 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.+||||+|||+..+... ++++.|.+||.++|.++-
T Consensus 359 ~~nvfAiGDca~~~~~~--------~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 359 VKNVFAIGDCADQRGLK--------PTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred cCceEEeccccccccCc--------cHHHHHHHHHHHHHHHHH
Confidence 89999999999554433 578999999999999973
No 131
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=1.2e-26 Score=291.70 Aligned_cols=335 Identities=18% Similarity=0.208 Sum_probs=228.1
Q ss_pred eEECCCCeeec--CCCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIED--FPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~--~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-+|+++. .||...... . ..++.+.+...++.+.+++. +.+..++.+++.++|+|||||||||++|..
T Consensus 253 p~p~~~grvCp~~~~Ce~~C~~--~--~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~ 328 (639)
T PRK12809 253 SLPEICGRVCPQDRLCEGACTL--K--DHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI 328 (639)
T ss_pred CcchhhcccCCCCCChHHhccC--C--CcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHH
Confidence 45556788885 478753221 1 13456777777776666542 222222223467999999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|+++|++ |+++++.+.+++.. ...........++.....+++++.|+++++++++... +.+.+ ....||
T Consensus 329 L~~~G~~--Vtv~e~~~~~GG~l-~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-l~~~~D 397 (639)
T PRK12809 329 LARAGVQ--VDVFDRHPEIGGML-TFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-------ITFSD-LTSEYD 397 (639)
T ss_pred HHHcCCc--EEEEeCCCCCCCee-eccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-------CCHHH-HHhcCC
Confidence 9999998 77888776543221 1110001122344555567788899999999865211 11111 234699
Q ss_pred EEEEcCCCC-CCcCCCCCCCC--cEEEecCHH-----HHHhhcc------cCCCCCcEEEECCChHHHHHHHHHhccC-C
Q psy2951 694 KIYLATGSS-PRTISQADGVN--KVFYLRTVE-----DANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKV-K 758 (1466)
Q Consensus 694 ~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~-----~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~ 758 (1466)
+||+|||+. +..++++ |.+ +++....+. +...+.. ....+|+|+|||+|++++++|..+.++| .
T Consensus 398 aV~latGa~~~~~~~i~-g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~ 476 (639)
T PRK12809 398 AVFIGVGTYGMMRADLP-HEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAA 476 (639)
T ss_pred EEEEeCCCCCCCCCCCC-CCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCC
Confidence 999999986 4556777 765 444321111 1111110 1125899999999999999999888887 5
Q ss_pred eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC--------------------CCC
Q psy2951 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNG 818 (1466)
Q Consensus 759 ~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~--------------------~~g 818 (1466)
+||+++|.+...++....++ ..++++||+|+++..+++|..++++++..+.+ .+.
T Consensus 477 ~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 477 SVTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred eEEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 89999998654333332322 23578899999999999997444555554422 112
Q ss_pred cEEecCEEEEccccccCc-cccccCCceeeCCCcEEeCC----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
.++++|.||+|+|+.|+. .+++..+++++++|+|.+|+ +++|+.|+|||+||++..+.. +..|+
T Consensus 552 ~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~-----------vv~Ai 620 (639)
T PRK12809 552 FELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADL-----------VVTAM 620 (639)
T ss_pred EEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchH-----------HHHHH
Confidence 378999999999999974 57788899999999999985 489999999999999876543 36899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|+.||.+|..
T Consensus 621 ~~Gr~AA~~i~~ 632 (639)
T PRK12809 621 AAGRQAARDMLT 632 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 132
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.94 E-value=3e-26 Score=279.07 Aligned_cols=288 Identities=21% Similarity=0.284 Sum_probs=205.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-CCCchhhccCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++... ..++.. .....+.....+++.+.|++++.++.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~--~V~vie~~~~~GG~l~~gip~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 216 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH--KVTVFERADRIGGLLRYGIPDF--KLEKEVIDRRIELMEAEGIEFRTNVEV 216 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC--cEEEEecCCCCCceeeecCCcc--cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 345789999999999999999999998 999999987654211 000000 011122222335677889999999844
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHH-HHH-hhhc------ccCCCCeEEEE
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVE-DAN-NIAP------HITPESNVVVI 1211 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~-~~~-~l~~------~~~~~~~vvVv 1211 (1466)
.. +... +.....||+||+|||+. ++.+++| |.+ ++++..++- .+. .+.. ....+++|+||
T Consensus 217 -~~-~~~~------~~~~~~~d~vvlAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVI 287 (471)
T PRK12810 217 -GK-DITA------EELLAEYDAVFLGTGAYKPRDLGIP-GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVI 287 (471)
T ss_pred -CC-cCCH------HHHHhhCCEEEEecCCCCCCcCCCC-CccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEE
Confidence 23 2211 11235799999999996 7888888 876 777643221 111 0111 12358999999
Q ss_pred cCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcccccH----H-HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q psy2951 1212 GSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGK----E-VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285 (1466)
Q Consensus 1212 G~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~~~~~----~-~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 1285 (1466)
|+|++|+|+|..+.+.|. +|+++++.+.+....... . ......+.+++.||+++++..++++. ++++++..|+
T Consensus 288 GgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~-~~~g~v~~V~ 366 (471)
T PRK12810 288 GGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE-GENGKVTGVK 366 (471)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE-ccCCEEEEEE
Confidence 999999999998888876 799777665443322110 0 01113455778899999999999998 5567776655
Q ss_pred cC-----CC---------CeeecCEEEEeeccccCc-cccccCCceeeCCCeEEeC-CCccccCCCEEEecccccCCCcc
Q psy2951 1286 LD-----NG---------TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHS 1349 (1466)
Q Consensus 1286 l~-----~g---------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~~~G~i~vd-~~~~t~~~~v~a~GD~a~~p~~~ 1349 (1466)
+. +| .++++|.||+|+|..|+. .|++..|+.++.+|++.+| ++++|+.|+|||+|||+..+..
T Consensus 367 ~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~- 445 (471)
T PRK12810 367 VVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSL- 445 (471)
T ss_pred EEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchh-
Confidence 32 32 478999999999999985 5888889998888899998 7999999999999999875432
Q ss_pred CCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1350 FYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1350 ~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+..|..||+.||.+|..
T Consensus 446 ----------~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 446 ----------VVWAIAEGRQAARAIDA 462 (471)
T ss_pred ----------HHHHHHHHHHHHHHHHH
Confidence 36899999999999864
No 133
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=3.2e-26 Score=296.97 Aligned_cols=322 Identities=21% Similarity=0.276 Sum_probs=220.2
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCccccc-cCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKLPMA-KLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-- 79 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-- 79 (1466)
||...++++ ++|+.|..++++......+.... +....+.++|+|||||||||+||..|++.|++++|++..+...
T Consensus 389 ~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 389 QCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV 468 (1006)
T ss_pred CHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce
Confidence 355544444 78999999999977553222111 1122346799999999999999999999999999987544321
Q ss_pred CCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCC-CCCCCCC
Q psy2951 80 LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSS-PRTISQA 157 (1466)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~-~~~~~~~ 157 (1466)
+.+..+.. ..+.++..+..+.+++.|++++.++.+. ..+++.+.. ...||+||||||+. |+.++ +
T Consensus 469 l~~gip~~-----rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-------~~~~~~~l~~~~~yDaViIATGa~~pr~l~-I 535 (1006)
T PRK12775 469 LQYGIPSF-----RLPRDIIDREVQRLVDIGVKIETNKVIG-------KTFTVPQLMNDKGFDAVFLGVGAGAPTFLG-I 535 (1006)
T ss_pred eeccCCcc-----CCCHHHHHHHHHHHHHCCCEEEeCCccC-------CccCHHHHhhccCCCEEEEecCCCCCCCCC-C
Confidence 11211111 1234455566777888999999986541 112222111 24699999999995 66554 5
Q ss_pred CCC--CcEEEecCHHHHHhhc---------ccCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcccccccCHH
Q psy2951 158 DGV--NKVFYLRTVEDANNIA---------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKE 225 (1466)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~ 225 (1466)
++. .+++....+....++. .....+++|+|||||++|+++|..+.++|. .|+++++......+..
T Consensus 536 pG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~--- 612 (1006)
T PRK12775 536 PGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPAR--- 612 (1006)
T ss_pred CCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCC---
Confidence 553 3455443333222211 112468999999999999999999999986 5888887543221111
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC-----------------CC--cEEeccEEEEeeccccCccc
Q psy2951 226 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NG--TTIPADLVIVGIGTVLNTNY 286 (1466)
Q Consensus 226 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-----------------~g--~~i~~D~Vi~a~G~~p~~~~ 286 (1466)
... .+.+++.||++++++.+.++..++++++..+.+. ++ .++++|.||+|+|+.|+..+
T Consensus 613 -~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 690 (1006)
T PRK12775 613 -IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPII 690 (1006)
T ss_pred -HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhh
Confidence 111 2346778999999999999976545555544321 12 36999999999999999887
Q ss_pred ccc-CCceecCCccEEECC-----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC
Q psy2951 287 LDG-KGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 355 (1466)
Q Consensus 287 l~~-~gl~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 355 (1466)
+.. .+++++.+|.|.+|+ +++|++|+|||+||++..+ .++..|+.+|+.||.+|....
T Consensus 691 ~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-----------~~vv~Ai~~Gr~AA~~I~~~L 754 (1006)
T PRK12775 691 TQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-----------ATVILAMGAGRRAARSIATYL 754 (1006)
T ss_pred hhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc-----------cHHHHHHHHHHHHHHHHHHHH
Confidence 654 478888889999996 7899999999999998643 356789999999999987543
No 134
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.94 E-value=6.9e-26 Score=274.26 Aligned_cols=319 Identities=20% Similarity=0.273 Sum_probs=216.3
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCcc----ccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKL----PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~ 78 (1466)
||...+.++ ++|+.|..++++........ .+++ .+.+.++|+||||||||++||..|++.|++++|++..+..
T Consensus 98 ~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~-~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 98 LCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSH-VVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred ChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCC-cCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 576666655 78999999999887553221 1111 1235679999999999999999999999998776544321
Q ss_pred C--CCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCC
Q psy2951 79 F--LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ 156 (1466)
Q Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~ 156 (1466)
. +.|..+. . ....++..+..+++++.|++++.++.+... +.+.+ ....||.||+|||+.+.....
T Consensus 177 gG~l~~gip~----~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-~~~~~D~vilAtGa~~~~~~~ 243 (467)
T TIGR01318 177 GGLLTFGIPS----F-KLDKAVLSRRREIFTAMGIEFHLNCEVGRD-------ISLDD-LLEDYDAVFLGVGTYRSMRGG 243 (467)
T ss_pred CceeeecCcc----c-cCCHHHHHHHHHHHHHCCCEEECCCEeCCc-------cCHHH-HHhcCCEEEEEeCCCCCCcCC
Confidence 1 1111110 0 112334445567788899999998865321 11111 124699999999998754333
Q ss_pred CCCC--CcEEEecCHHH--H---Hhhc------ccCCCCCcEEEECCCHhHHHHHHHHhhCC-CEEEEEeecCccccccc
Q psy2951 157 ADGV--NKVFYLRTVED--A---NNIA------PHITPESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 157 ~~~~--~~~~~~~~~~~--~---~~~~------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~ 222 (1466)
+++. ++++....+.. . ..+. .....+++++|||+|++|+++|..+.++| .+||++++.+....+..
T Consensus 244 i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~ 323 (467)
T TIGR01318 244 LPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGS 323 (467)
T ss_pred CCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCC
Confidence 4443 34443211110 0 0010 01134789999999999999999999998 47999998754322222
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc--------------------CCCcEEeccEEEEeecccc
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGTVL 282 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~--------------------~~g~~i~~D~Vi~a~G~~p 282 (1466)
..+ .+.+.+.||++++++.+.++..++++++..+++ ++..++++|.||+|+|+.|
T Consensus 324 ~~e-----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 324 RRE-----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred HHH-----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 222 234567899999999999997644455543332 1124799999999999999
Q ss_pred Cc-cccccCCceecCCccEEEC----CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 283 NT-NYLDGKGVELNGQKAVVVN----EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 283 ~~-~~l~~~gl~~~~~g~i~vd----~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
+. .+++..+++++++|++.+| ++++|+.|+||++|||+..+ ..+..|+.+|+.||.+|..
T Consensus 399 ~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~-----------~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 399 HAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA-----------DLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred CccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc-----------cHHHHHHHHHHHHHHHHHH
Confidence 85 5677778888888999999 67899999999999998643 2456799999999999863
No 135
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=2.9e-26 Score=289.05 Aligned_cols=333 Identities=17% Similarity=0.192 Sum_probs=217.5
Q ss_pred CceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc----cccCCCCCCeEEEEcCchHHHHHHH
Q psy2951 537 GACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM----AKLSSGNKDTFIVVGGGPSGATCVE 612 (1466)
Q Consensus 537 ~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vvVIGgG~AGl~aA~ 612 (1466)
..-|..-.|++|..||...+..- ..+..+.+...++.+.+......+ ......+.++|+|||+|+||+++|.
T Consensus 225 ~np~~~~~g~vC~~~Ce~~C~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~ 300 (604)
T PRK13984 225 TNPLSMVCGRVCTHKCETVCSIG----HRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAY 300 (604)
T ss_pred cCCccchhhCcCCchHHHhhccc----CCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHH
Confidence 44455556888888887642221 123444444455444433211111 1223456789999999999999999
Q ss_pred HHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEec
Q psy2951 613 TLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDF 692 (1466)
Q Consensus 613 ~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~ 692 (1466)
.|+++|++ |+++++++..++... .........+++..+..+++++.|++++.++.|.. +. ..+ .....|
T Consensus 301 ~L~~~G~~--v~vie~~~~~gG~~~-~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--~~-----~~~-~~~~~y 369 (604)
T PRK13984 301 FLATMGYE--VTVYESLSKPGGVMR-YGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--DI-----PLE-ELREKH 369 (604)
T ss_pred HHHHCCCe--EEEEecCCCCCceEe-ecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC--cC-----CHH-HHHhcC
Confidence 99999987 778877765432211 10000112334445556778889999999986632 11 111 113579
Q ss_pred CEEEEcCCCC-CCcCCCCCCCC--cEEEecCHHHHHhhccc-------CCCCCcEEEECCChHHHHHHHHHhccC-----
Q psy2951 693 TKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIAPH-------ITPESNVVVIGSSFIGMEAAAFCASKV----- 757 (1466)
Q Consensus 693 d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~A~~l~~~g----- 757 (1466)
|+||||||+. ++.++++ |.+ +++. ..+....+... ...+++|+|||||++|+|+|..+++++
T Consensus 370 D~vilAtGa~~~r~l~i~-G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g 446 (604)
T PRK13984 370 DAVFLSTGFTLGRSTRIP-GTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYG 446 (604)
T ss_pred CEEEEEcCcCCCccCCCC-CcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccC
Confidence 9999999986 6888888 866 4443 33333322211 123799999999999999999998875
Q ss_pred -CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC-------------------C
Q psy2951 758 -KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-------------------N 817 (1466)
Q Consensus 758 -~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~-------------------~ 817 (1466)
.+|+++...... ..++.... .+.+ +.+.||+++++..++++. .+++++..+.+. +
T Consensus 447 ~~~V~v~~~~r~~--~~~~~~~~-e~~~-~~~~GV~i~~~~~~~~i~-~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~ 521 (604)
T PRK13984 447 EVNVKVTSLERTF--EEMPADME-EIEE-GLEEGVVIYPGWGPMEVV-IENDKVKGVKFKKCVEVFDEEGRFNPKFDESD 521 (604)
T ss_pred ceEEEEeccccCc--ccCCCCHH-HHHH-HHHcCCEEEeCCCCEEEE-ccCCEEEEEEEEEEeeccCCCCCccceecCCc
Confidence 378887533111 11222221 2222 346899999999898886 344555444331 2
Q ss_pred CcEEecCEEEEccccccCcccccc---CCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 818 GTTIPADLVIVGIGTVLNTNYLDG---KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 818 g~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
+.++++|.||+|+|++|+++++.. .+++. ++|+|.||++++|++|+|||+|||+..+.. ..|+.
T Consensus 522 ~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~------------v~Ai~ 588 (604)
T PRK13984 522 QIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI------------IHGVA 588 (604)
T ss_pred eEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH------------HHHHH
Confidence 247999999999999999887643 23554 468899999999999999999999976542 47999
Q ss_pred HHHHHHHHhcc
Q psy2951 895 HGRIAALNMVE 905 (1466)
Q Consensus 895 ~g~~aA~~i~~ 905 (1466)
+|+.||.+|..
T Consensus 589 ~G~~AA~~I~~ 599 (604)
T PRK13984 589 DGYWAAEGIDM 599 (604)
T ss_pred HHHHHHHHHHH
Confidence 99999999853
No 136
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-27 Score=246.23 Aligned_cols=291 Identities=24% Similarity=0.326 Sum_probs=218.1
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
....+||+||||||||-+||.+.+|.|.+.-+ +.|+-..-....+....... .....+...+.+..+++.|++...
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl-~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGL-VAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhh-hhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 34569999999999999999999999987332 22221111112222222222 334456666777788889988777
Q ss_pred eEEEEecc----ccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCh
Q psy2951 669 KKIISDSE----LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744 (1466)
Q Consensus 669 ~~v~~i~~----~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~ 744 (1466)
.+++.+.. .+...|++++|..+..+.+|||||++++...+| |.+ -+.-+.+..+..|...+.++|+|+|||||+
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvP-GE~-e~rnKGVayCPHCDGPLF~gK~VAVIGGGN 364 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVP-GED-EYRNKGVAYCPHCDGPLFKGKRVAVIGGGN 364 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCC-chH-HHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence 66666622 235678999999999999999999999999999 876 122233344556777888899999999999
Q ss_pred HHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECCC---Cc-
Q psy2951 745 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN---GT- 819 (1466)
Q Consensus 745 ~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g~- 819 (1466)
+|+|.|..|+-.-..||+++-.+.+- ..+.+++.|.+ .+|+++++.+-++|. ++..++..+...+ |+
T Consensus 365 SGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~-Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 365 SGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVK-GDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred chHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEe-cCCceecceEEEeccCCce
Confidence 99999999999999999997765432 23455666554 589999999999998 4445665555433 33
Q ss_pred -EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHH
Q psy2951 820 -TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898 (1466)
Q Consensus 820 -~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~ 898 (1466)
.++-+-|++-+|..||++|++.. +++++.|-|.+|....||.|+|||+|||...|.... ..|+.+|..
T Consensus 437 ~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQI----------IIamG~GA~ 505 (520)
T COG3634 437 HHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQI----------IIAMGEGAK 505 (520)
T ss_pred eEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccceE----------EEEecCcch
Confidence 57788999999999999999987 899999999999999999999999999999887541 246666666
Q ss_pred HHHHhc
Q psy2951 899 AALNMV 904 (1466)
Q Consensus 899 aA~~i~ 904 (1466)
|+...+
T Consensus 506 AaL~AF 511 (520)
T COG3634 506 ASLSAF 511 (520)
T ss_pred hhhhhh
Confidence 666554
No 137
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.94 E-value=8.8e-26 Score=283.66 Aligned_cols=281 Identities=22% Similarity=0.257 Sum_probs=199.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC-CchhhccCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++|+|||||+||++||..|++.|+ +|+|||+++.++..... ++.. ..+..+.....+.+.+.|+++++++. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~--~Vtv~e~~~~~GG~l~~gip~~--~~~~~~~~~~~~~l~~~Gv~i~~~~~-v 266 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH--DVTIFDANEQAGGMMRYGIPRF--RLPESVIDADIAPLRAMGAEFRFNTV-F 266 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCCceeeecCCCC--CCCHHHHHHHHHHHHHcCCEEEeCCc-c
Confidence 45789999999999999999999998 99999998765321110 0000 01111222223456677999998883 3
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCC-CcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~-~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
.+ + +.+++. ...||+||+|||+.+ +.+++| |.+ +++...++-...........+++|+|||+|++|+|+
T Consensus 267 ~~-d-----v~~~~~-~~~~DaVilAtGa~~~~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~ 338 (652)
T PRK12814 267 GR-D-----ITLEEL-QKEFDAVLLAVGAQKASKMGIP-GEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDA 338 (652)
T ss_pred cC-c-----cCHHHH-HhhcCEEEEEcCCCCCCCCCCC-CcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHH
Confidence 33 2 222222 235999999999975 567788 766 555432222211122234568999999999999999
Q ss_pred HHHHhcCCC-eEEEEcCCCc-CCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE--EEEEcC---------
Q psy2951 1221 AAFCASKVK-SVTVVGRGAV-PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV--TAANLD--------- 1287 (1466)
Q Consensus 1221 a~~l~~~g~-~v~vv~~~~~-~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~--~~v~l~--------- 1287 (1466)
|..+.+.|. +|+++++... .|+ ....+ +.+. .+.||+|+++..+.++. .+++.+ ..+.+.
T Consensus 339 A~~l~~~Ga~~Vtlv~r~~~~~mp-a~~~e----i~~a-~~eGV~i~~~~~~~~i~-~~~~~~~v~~~~~~~~~~d~~G~ 411 (652)
T PRK12814 339 ARTALRLGAESVTILYRRTREEMP-ANRAE----IEEA-LAEGVSLRELAAPVSIE-RSEGGLELTAIKMQQGEPDESGR 411 (652)
T ss_pred HHHHHHcCCCeEEEeeecCcccCC-CCHHH----HHHH-HHcCCcEEeccCcEEEE-ecCCeEEEEEEEEEecccCCCCC
Confidence 999999986 6999998764 232 22222 2222 36799999999999987 334332 222221
Q ss_pred ------CCC--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCC-CccccCCCEEEecccccCCCccCCCceeeee
Q psy2951 1288 ------NGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358 (1466)
Q Consensus 1288 ------~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~ 1358 (1466)
+|+ ++++|.||+++|..|++++++..|+.++.+|+|.||+ +++|+.|+|||+||++..|..
T Consensus 412 ~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~---------- 481 (652)
T PRK12814 412 RRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADI---------- 481 (652)
T ss_pred CcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchH----------
Confidence 222 5899999999999999999998999998889999996 689999999999999876543
Q ss_pred cHHHHHHHHHHHHHHhcC
Q psy2951 1359 HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1359 ~~~~A~~qa~~aa~~i~g 1376 (1466)
+..|+.||+.||.+|..
T Consensus 482 -v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 482 -AINAVEQGKRAAHAIDL 498 (652)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 37899999999999873
No 138
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=266.40 Aligned_cols=329 Identities=29% Similarity=0.376 Sum_probs=270.0
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 598 vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
++|||+|+||+++|..|++......++++..+...+|..+.+..... ...+.+..... ...+.++++..+++|..+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 58999999999999999999888889888888877887777766554 22233333333 234669999999999999
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHh
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 754 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~ 754 (1466)
|...+.+.+.++ ++.||++++|||++|..++.. ....++..+...+...+.......++++|+|+|.+|+|+|..++
T Consensus 80 -d~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~ 156 (415)
T COG0446 80 -DPENKVVLLDDG-EIEYDYLVLATGARPRPPPIS-DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA 156 (415)
T ss_pred -cCCCCEEEECCC-cccccEEEEcCCCcccCCCcc-ccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH
Confidence 999999999888 899999999999999988722 44478899999999888776655789999999999999999999
Q ss_pred ccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE--EECCCCcEEecCEEEEcccc
Q psy2951 755 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 755 ~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~--v~~~~g~~i~~D~vi~a~G~ 832 (1466)
++|++|++++..++++...+.+++.+.+.+.++++||+++++..+.+|+...+ .... +...++..+++|.+++++|.
T Consensus 157 ~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 157 KRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGN-TLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccC-cceeeEEEEeCCcEEEeeEEEEeecc
Confidence 99999999999998874322278899999999999999999999999994433 2222 57778889999999999999
Q ss_pred ccCccccccCCc-eeeCCCcEEeCCCCCCC-CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 833 VLNTNYLDGKGV-ELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 833 ~p~~~~~~~~gl-~~~~~G~i~vd~~~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
+|+..+.++.+. ....+|++.||+.++|+ .++|||+|||+..+... ++.....++++.|..+++.++.++.+. ..+
T Consensus 236 ~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~-~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~ 313 (415)
T COG0446 236 RPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE-TGKGGRIALWAIAVAAGRIAAENIAGA-LRI 313 (415)
T ss_pred cccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeeccc-CCceeeeechhhHhhhhHHHHHHhccc-ccc
Confidence 999777777652 45667899999999998 99999999999987765 245566889999999999999999877 443
Q ss_pred -cccCeeeeeecCceeEEeeccCC
Q psy2951 911 -STIPFFWTMLFGVGFRFAGYAAG 933 (1466)
Q Consensus 911 -~~~~~~~~~~~~~~~~~~g~~~~ 933 (1466)
..++.++...++......|....
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~ 337 (415)
T COG0446 314 PGLLGTVISDVGDLCAASTGLTEG 337 (415)
T ss_pred ccccCceEEEEcCeEEEEecCCcc
Confidence 56666777777777777776653
No 139
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=2.6e-25 Score=281.37 Aligned_cols=320 Identities=19% Similarity=0.275 Sum_probs=215.0
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCccccc---cCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKLPMA---KLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN- 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~- 78 (1466)
||...+.++ ++|+.|..++++..+........ .....+.++|+|||||||||+||..|++.|++++|++..+..
T Consensus 284 ~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 284 LCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred ChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 465555544 78999999999887654322111 111234679999999999999999999999998887654321
Q ss_pred -CCCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCC
Q psy2951 79 -FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~ 157 (1466)
.+.|..+.. ....++..+..+++++.|++++.++.+..+. .+.+ ....||.|++|||+.......+
T Consensus 364 G~l~~gip~~-----~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i-------~~~~-~~~~~DavilAtGa~~~~~l~i 430 (654)
T PRK12769 364 GLLTFGIPAF-----KLDKSLLARRREIFSAMGIEFELNCEVGKDI-------SLES-LLEDYDAVFVGVGTYRSMKAGL 430 (654)
T ss_pred ceeeecCCCc-----cCCHHHHHHHHHHHHHCCeEEECCCEeCCcC-------CHHH-HHhcCCEEEEeCCCCCCCCCCC
Confidence 111111110 1122334445567778899999888653211 1111 1136999999999865432234
Q ss_pred CCC--CcEEEecC-----HHHHHhhcc------cCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcccccccC
Q psy2951 158 DGV--NKVFYLRT-----VEDANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLG 223 (1466)
Q Consensus 158 ~~~--~~~~~~~~-----~~~~~~~~~------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~ 223 (1466)
++. .+++.... ......+.. ....+++|+|||||++|+|+|..+.+.|. +|+++++.+....+..+
T Consensus 431 ~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~ 510 (654)
T PRK12769 431 PNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSK 510 (654)
T ss_pred CCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCH
Confidence 432 33432110 011111110 01357899999999999999998888885 79999986543222222
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc---------CCC-----------cEEeccEEEEeeccccC
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---------DNG-----------TTIPADLVIVGIGTVLN 283 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~---------~~g-----------~~i~~D~Vi~a~G~~p~ 283 (1466)
. ..+.+++.||++++++.++++..++++++..+++ .+| .++++|.||+|+|+.|+
T Consensus 511 ~-----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 511 K-----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred H-----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 2 2345678899999999999997544455544432 112 26999999999999998
Q ss_pred c-cccccCCceecCCccEEECC----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 284 T-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 284 ~-~~l~~~gl~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
. .+++..+++++.+|.|.+|+ +++|+.|+|||+||++..+ ..+..|+.+|+.||.+|..
T Consensus 586 ~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~-----------~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 586 GMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA-----------DLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC-----------cHHHHHHHHHHHHHHHHHH
Confidence 5 57788889999999999986 4899999999999998654 2456899999999999864
No 140
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=6.6e-25 Score=260.07 Aligned_cols=293 Identities=19% Similarity=0.261 Sum_probs=198.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHH--cCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQ--NGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~--~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
...+++|+|||||||||+||+.|++ .|++ |+++|+.+.+ |.......... .....+...+...+...+++++.+
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~--Vtv~E~~p~p-gGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n 99 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGAR--VDIIERLPTP-FGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGN 99 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCe--EEEEecCCCC-cceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcC
Confidence 4457899999999999999999997 5666 8888888753 33333221111 222334445556677788998887
Q ss_pred eEEEEeccccccEEEccCCCEEecCEEEEcCCCCC-CcCCCCCCCC--cEEEecCHHH-------HHhhcccCCCCCcEE
Q psy2951 669 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVED-------ANNIAPHITPESNVV 738 (1466)
Q Consensus 669 ~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~-~~~~~~~g~~--~~~~~~~~~~-------~~~~~~~~~~~~~vv 738 (1466)
..+.. .+++++. ...||+||||||+.+ +.+++| |.+ +++...++.. ...+...+..+++|+
T Consensus 100 v~vg~-------dvtl~~L-~~~yDaVIlAtGa~~~~~l~Ip-G~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~Vv 170 (491)
T PLN02852 100 VTLGR-------DVSLSEL-RDLYHVVVLAYGAESDRRLGIP-GEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAV 170 (491)
T ss_pred EEECc-------cccHHHH-hhhCCEEEEecCCCCCCCCCCC-CCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEE
Confidence 75521 2333332 247999999999985 678888 866 6665544321 111111233589999
Q ss_pred EECCChHHHHHHHHHhcc--------------------C-CeEEEEeecCccCccccCHHHH------------------
Q psy2951 739 VIGSSFIGMEAAAFCASK--------------------V-KSVTVVGRGAVPFQESLGKEVG------------------ 779 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~--------------------g-~~V~lv~~~~~~~~~~~~~~~~------------------ 779 (1466)
|||+|++|+|+|..|.+. + .+|++++|+...-...-.+++.
T Consensus 171 VIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~ 250 (491)
T PLN02852 171 VLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLT 250 (491)
T ss_pred EECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhc
Confidence 999999999999998764 4 5799999987321111112221
Q ss_pred -------------------HHHHHHHHh---------cCcEEEccceEEEEEec--CCCceEEEECC-------------
Q psy2951 780 -------------------ERITKLFES---------KGVKFVMKANVSSFEKN--EKNDVTAANLD------------- 816 (1466)
Q Consensus 780 -------------------~~~~~~l~~---------~gv~~~~~~~v~~i~~~--~~~~~~~v~~~------------- 816 (1466)
+.+.+...+ ++|.|++...+++|..+ +++++..+++.
T Consensus 251 ~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~ 330 (491)
T PLN02852 251 LSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQ 330 (491)
T ss_pred cccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCc
Confidence 122222222 58999999999999732 22456555442
Q ss_pred ----CCc--EEecCEEEEccccc--cCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeee
Q psy2951 817 ----NGT--TIPADLVIVGIGTV--LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 886 (1466)
Q Consensus 817 ----~g~--~i~~D~vi~a~G~~--p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~ 886 (1466)
+|+ +|+||.||.++|++ |...+ -...++..+.+|+|.+|+.++|+.|+|||+|||...|...
T Consensus 331 ~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gv-------- 402 (491)
T PLN02852 331 VAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGI-------- 402 (491)
T ss_pred ccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCe--------
Confidence 122 68999999999998 55553 3444677788899999988899999999999999877632
Q ss_pred ccHHHHHHHHHHHHHHhccC
Q psy2951 887 GHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 887 ~~~~~A~~~g~~aA~~i~~~ 906 (1466)
...++.+|+.+|.+|+..
T Consensus 403 --I~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 403 --IGTNLTCAEETVASIAED 420 (491)
T ss_pred --eeecHhhHHHHHHHHHHH
Confidence 236888889999888743
No 141
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.93 E-value=5.2e-25 Score=267.54 Aligned_cols=285 Identities=22% Similarity=0.287 Sum_probs=200.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCCCchhhccCcccccccChhhhccCCcEEEcCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
..++|+|||||+||+++|..|++.|+ +|+|||+++.++ |..|.. . ....+..+..+++++.|++++.++
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~--~V~v~e~~~~~gG~l~~gip~~----~-~~~~~~~~~~~~~~~~Gv~~~~~~ 214 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH--TVTVFEREDRCGGLLMYGIPNM----K-LDKAIVDRRIDLLSAEGIDFVTNT 214 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC--eEEEEecCCCCCceeeccCCCc----c-CCHHHHHHHHHHHHhCCCEEECCC
Confidence 34799999999999999999999998 999999988643 222211 0 011122233467788899999998
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEec-CHHHHHhh---------hcccCCCCe
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLR-TVEDANNI---------APHITPESN 1207 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~-~~~~~~~l---------~~~~~~~~~ 1207 (1466)
.+. . +... +.....||+|++|||+. |+.++++ |.+ +|++.. .+.++... ......+|+
T Consensus 215 ~v~-~-~~~~------~~~~~~~d~VilAtGa~~~~~l~i~-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~ 285 (485)
T TIGR01317 215 EIG-V-DISA------DELKEQFDAVVLAGGATKPRDLPIP-GRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKK 285 (485)
T ss_pred EeC-C-ccCH------HHHHhhCCEEEEccCCCCCCcCCCC-CcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCE
Confidence 653 2 2111 11235799999999997 8999999 876 777643 22332211 111235899
Q ss_pred EEEEcCCHHHHHHHHHHhcCC-CeEEEEcCCCcCCccccc--------H--HHHHHHHHHHHhCCcEE-EcCceEEEEEe
Q psy2951 1208 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLG--------K--EVGERITKLFESKGVKF-VMKANVSSFEK 1275 (1466)
Q Consensus 1208 vvVvG~g~~g~e~a~~l~~~g-~~v~vv~~~~~~~~~~~~--------~--~~~~~l~~~~~~~gv~~-~~~~~v~~i~~ 1275 (1466)
|+|||+|++|+|+|..+.+.| .+|+++++.+..+..... . +....+.+..+..||.+ +++..+.++..
T Consensus 286 VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~ 365 (485)
T TIGR01317 286 VVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIG 365 (485)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEE
Confidence 999999999999988777776 579999987765432111 0 12223444444567654 46777888872
Q ss_pred cCCCcEEEEEc--------CCCC-----------eeecCEEEEeeccc-cCccccccCCceeeCCCeEEe-CCCccccCC
Q psy2951 1276 NEKNDVTAANL--------DNGT-----------TIPADLVIVGIGTV-LNTNYLDGKGVELNGQKAVVV-NEYLETNVP 1334 (1466)
Q Consensus 1276 ~~~g~~~~v~l--------~~g~-----------~i~~D~vv~a~G~~-p~~~~~~~~gl~~~~~G~i~v-d~~~~t~~~ 1334 (1466)
.+++++..+++ ++|. ++++|.||+|+|.. |++++++..|+.++.+|++.+ |++++|+.|
T Consensus 366 ~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~ 445 (485)
T TIGR01317 366 DDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIP 445 (485)
T ss_pred cCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCC
Confidence 22356666653 1342 69999999999985 888999989998887888854 588999999
Q ss_pred CEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1335 ~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+|||+|||+..+... ..|..||+.||.+|..
T Consensus 446 gVfAaGD~~~g~~~~-----------~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 446 GVFAAGDCRRGQSLI-----------VWAINEGRKAAAAVDR 476 (485)
T ss_pred CEEEeeccCCCcHHH-----------HHHHHHHHHHHHHHHH
Confidence 999999998755432 5799999999999864
No 142
>KOG2495|consensus
Probab=99.93 E-value=8e-25 Score=237.52 Aligned_cols=294 Identities=21% Similarity=0.315 Sum_probs=219.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhcc--CCcEEEcC
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKD--NDIHVIKG 1139 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~ 1139 (1466)
...+++|||+|+|.+|.+.+..|-..-| +|++|+..+|.-|-+..-|-... .....+..+-...... .+++++..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y--dV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA 129 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY--DVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA 129 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc--ceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec
Confidence 3456899999999999999999999989 99999888876654322222221 1111111111112222 25565544
Q ss_pred CeEEEeecCCCCeEEec----CC----cEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC-------
Q psy2951 1140 KKIISDSELNEKKIKLQ----DG----TSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT------- 1203 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~----~g----~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~------- 1203 (1466)
+.+.| |++++.|.+. ++ ..+.||+||+|+|+++..+.+| |.. +.+.++..+||+++|..+-
T Consensus 130 -ec~~i-Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgip-GV~e~~~FLKEv~dAqeIR~~~~~~le~a~ 206 (491)
T KOG2495|consen 130 -ECTKI-DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIP-GVEENAHFLKEVEDAQEIRRKVIDNLEKAE 206 (491)
T ss_pred -ccEee-cccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCC-chhhchhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 48899 9999988764 44 4688999999999999999999 877 7888999999999865421
Q ss_pred ----------CCCeEEEEcCCHHHHHHHHHHhcC--------------CCeEEEEcCCCcCCcccccHHHHHHHHHHHHh
Q psy2951 1204 ----------PESNVVVIGSSFIGMEAAAFCASK--------------VKSVTVVGRGAVPFQESLGKEVGERITKLFES 1259 (1466)
Q Consensus 1204 ----------~~~~vvVvG~g~~g~e~a~~l~~~--------------g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~ 1259 (1466)
.--++||||||++|+|.|..|... ..+||+++..+..+. .++..+.++..+++.+
T Consensus 207 ~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 207 LPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQFVR 285 (491)
T ss_pred cCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHHhhh
Confidence 123699999999999999977543 358999999987775 7889999999999999
Q ss_pred CCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccCCceeeCCC--eEEeCCCcccc-CC
Q psy2951 1260 KGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK--AVVVNEYLETN-VP 1334 (1466)
Q Consensus 1260 ~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G--~i~vd~~~~t~-~~ 1334 (1466)
.||++.+++.|..++ .+ -..+...|| ++|++-++|+++|..|. ++.+...-++++.| ++.+|++||.. .+
T Consensus 286 ~~I~~~~~t~Vk~V~-~~---~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~ 360 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVT-EK---TIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVK 360 (491)
T ss_pred ccceeecccEEEeec-Cc---EEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcC
Confidence 999999999999987 22 233444566 68999999999998887 44443333344444 79999999986 89
Q ss_pred CEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1335 ~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
||||+|||+..+... ++-+.|.+||..+|+++-
T Consensus 361 nvfAiGDca~~~~~~--------~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 361 NVFAIGDCADQRGLK--------PTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred ceEEeccccccccCc--------cHHHHHHHHHHHHHHHHH
Confidence 999999999555432 234899999999999875
No 143
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.93 E-value=1.8e-24 Score=272.23 Aligned_cols=320 Identities=19% Similarity=0.263 Sum_probs=215.0
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCccc---cccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKLP---MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN- 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~- 78 (1466)
||...++++ ++|+.|..++++..+...+.. .......+.++|+|||||||||++|..|++.|++++|++..+..
T Consensus 267 ~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 267 LCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred ChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 466555544 789999999998886543222 11112234688999999999999999999999998887654431
Q ss_pred -CCCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCC
Q psy2951 79 -FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~ 157 (1466)
.+.|..+.. . ...++.....+++++.|++++.++.+... +.+.+ ....||.|++|||+.+.....+
T Consensus 347 G~l~~gip~~----~-l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-l~~~~DaV~latGa~~~~~~~i 413 (639)
T PRK12809 347 GMLTFGIPPF----K-LDKTVLSQRREIFTAMGIDFHLNCEIGRD-------ITFSD-LTSEYDAVFIGVGTYGMMRADL 413 (639)
T ss_pred CeeeccCCcc----c-CCHHHHHHHHHHHHHCCeEEEcCCccCCc-------CCHHH-HHhcCCEEEEeCCCCCCCCCCC
Confidence 111211111 0 11233344456778889999988865321 11111 1246999999999975433334
Q ss_pred CCC--CcEEEecCH-----HHHHhhcc------cCCCCCcEEEECCCHhHHHHHHHHhhCC-CEEEEEeecCcccccccC
Q psy2951 158 DGV--NKVFYLRTV-----EDANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLG 223 (1466)
Q Consensus 158 ~~~--~~~~~~~~~-----~~~~~~~~------~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~~ 223 (1466)
++. .+++....+ .+...+.. ....+++++|+|+|++++++|..+.++| .+||++++.+....+...
T Consensus 414 ~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~ 493 (639)
T PRK12809 414 PHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSR 493 (639)
T ss_pred CCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 443 233331000 11111110 1235789999999999999999888888 589999987543222222
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc--------------------CCCcEEeccEEEEeeccccC
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGTVLN 283 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~--------------------~~g~~i~~D~Vi~a~G~~p~ 283 (1466)
.++ . .+++.||++++++.+++|..++++++..+.+ ++..++++|.||+|+|+.|+
T Consensus 494 ~e~----~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~ 568 (639)
T PRK12809 494 KEV----V-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAH 568 (639)
T ss_pred HHH----H-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCC
Confidence 222 2 3467899999999999997654455554321 11237899999999999997
Q ss_pred c-cccccCCceecCCccEEECC----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 284 T-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 284 ~-~~l~~~gl~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
. .+++..+++++++|+|.+|+ +++|+.|+|||+||++..+ .++..|+.+|+.||.+|..
T Consensus 569 ~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~-----------~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 569 AMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA-----------DLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc-----------hHHHHHHHHHHHHHHHHHH
Confidence 4 56777889998889999985 4899999999999998643 3467899999999999874
No 144
>KOG0404|consensus
Probab=99.92 E-value=1.2e-24 Score=213.50 Aligned_cols=288 Identities=19% Similarity=0.235 Sum_probs=208.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-CCCCCCccc---h-----hcccCcccccccChhhhhcCCeEE
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLS---K-----QLDIKADSILLRTEEFYKDNDIHV 113 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~v~~ 113 (1466)
+.+|+|||+|||+.+||+++++.-.+..++|--.-+. .|....... + .-.+...++...++++..+++.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4589999999999999999999988888876322111 111111000 0 012345567777888888999999
Q ss_pred EeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCC-CcEEEecCHHHHHhhcccC--CCCCcEEEECC
Q psy2951 114 IKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-NKVFYLRTVEDANNIAPHI--TPESNVVVIGS 190 (1466)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGg 190 (1466)
+..+....+....-+++.+ +.+.+.+|.+|+|||+..+++. +++. +.-|+-+.+..+.-++... +++|..+||||
T Consensus 88 ~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGG 165 (322)
T KOG0404|consen 88 ITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGG 165 (322)
T ss_pred eeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcC
Confidence 8877544444444455544 5567899999999999887764 3333 3336677777777777654 68899999999
Q ss_pred CHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHH-HHHHhCCcEEEcCceEEEEEecCC----CCeEEEEcCC
Q psy2951 191 SFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT-KLFESKGVKFVMKANVSSFEKNEK----NDVTAANLDN 265 (1466)
Q Consensus 191 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~-~~l~~~GV~i~~~~~v~~i~~~~~----~~~~~v~~~~ 265 (1466)
|.+++|.|..|.+.+++|++++|.+... .+..++ +.++..+|+++.++.+.+..++.. -++..+.+.+
T Consensus 166 GDsA~EEA~fLtkyaskVyii~Rrd~fR-------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge 238 (322)
T KOG0404|consen 166 GDSAMEEALFLTKYASKVYIIHRRDHFR-------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE 238 (322)
T ss_pred cHHHHHHHHHHHhhccEEEEEEEhhhhh-------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCc
Confidence 9999999999999999999999976432 223333 344556899999998877765421 1234445555
Q ss_pred CcEEeccEEEEeeccccCccccccCCceecCCccEEEC-CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHH
Q psy2951 266 GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 344 (1466)
Q Consensus 266 g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g 344 (1466)
.+.++.+-+++++|..|++.+++. .+++|.+|||.+- ..-.||+|++||+||+.... ..++..|...|
T Consensus 239 ~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k----------yRQAvTaAgsG 307 (322)
T KOG0404|consen 239 ETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK----------YRQAVTAAGSG 307 (322)
T ss_pred ccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchHH----------HHHHHhhhccc
Confidence 578999999999999999999987 7899999999987 45678999999999997543 34455566666
Q ss_pred HHHHHH
Q psy2951 345 RIAALN 350 (1466)
Q Consensus 345 ~~aa~~ 350 (1466)
-++|..
T Consensus 308 ciaald 313 (322)
T KOG0404|consen 308 CIAALD 313 (322)
T ss_pred hhhhhh
Confidence 666543
No 145
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-25 Score=234.08 Aligned_cols=288 Identities=24% Similarity=0.325 Sum_probs=206.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhc---ccCcccccccChhhhhcCCeEEEeCc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILLRTEEFYKDNDIHVIKGK 117 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~ 117 (1466)
...|||+||||||||-+||.+.++.|.+.-++ .++-.....+....-... .....++...+++..+++.++++...
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~q 287 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQ 287 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhh
Confidence 34699999999999999999999999875543 222111111111111111 12344555667777788888877654
Q ss_pred eEEEecc----ccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHh
Q psy2951 118 KIISDSE----LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFI 193 (1466)
Q Consensus 118 ~v~~~~~----~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 193 (1466)
....... .+-..|++.+|..+.++.+|+|||++.+.+. .|+.+. +.-+...+|..++..++++|+|+|||||++
T Consensus 288 ra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~n-vPGE~e-~rnKGVayCPHCDGPLF~gK~VAVIGGGNS 365 (520)
T COG3634 288 RASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMN-VPGEDE-YRNKGVAYCPHCDGPLFKGKRVAVIGGGNS 365 (520)
T ss_pred hhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCC-CCchHH-HhhCCeeeCCCCCCcccCCceEEEECCCcc
Confidence 4332211 2346788999999999999999999988764 444321 222344556667888899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCCeEEEEc---CCC--c
Q psy2951 194 GMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANL---DNG--T 267 (1466)
Q Consensus 194 g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~v~~---~~g--~ 267 (1466)
|+|.|..|+..-..||+++-.+.+. .-+-+++.++. .+|+++++..-++|.+++ .++..+.. .+| +
T Consensus 366 GvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 366 GVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEH 437 (520)
T ss_pred hHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCcee
Confidence 9999999999999999997654322 12345555555 589999999999998763 34444332 233 4
Q ss_pred EEeccEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHH
Q psy2951 268 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 347 (1466)
Q Consensus 268 ~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~a 347 (1466)
.++-+-|++-+|..||++||+.. ++++++|-|.||....||+|+|||+|||+..|. .++..|+.+|..|
T Consensus 438 ~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y----------KQIIIamG~GA~A 506 (520)
T COG3634 438 HLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPY----------KQIIIAMGEGAKA 506 (520)
T ss_pred EEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCcc----------ceEEEEecCcchh
Confidence 67788999999999999999987 899999999999999999999999999998764 2333455566655
Q ss_pred HHH
Q psy2951 348 ALN 350 (1466)
Q Consensus 348 a~~ 350 (1466)
+..
T Consensus 507 aL~ 509 (520)
T COG3634 507 SLS 509 (520)
T ss_pred hhh
Confidence 544
No 146
>KOG0404|consensus
Probab=99.92 E-value=1.3e-24 Score=213.38 Aligned_cols=269 Identities=18% Similarity=0.261 Sum_probs=201.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC-CCCCCCCCCcc-------chhc-ccCcccccccCHhHhhhCCcE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD-ENFLPYDRVKL-------SKQL-DIKADSILLRTEEFYKDNDIH 664 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~-~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~gv~ 664 (1466)
.+.+|+|||.|||+.+||.++++...+..+++--- ++..|+..... +... +....++.++++++..++|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 45699999999999999999999887743332111 11111111110 0011 145567788888888999999
Q ss_pred EEEceEEEEecccccc--EEEccCCCEEecCEEEEcCCCCCCcCCCCCCC-CcEEEecCHHHHHhhcccC--CCCCcEEE
Q psy2951 665 VIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGV-NKVFYLRTVEDANNIAPHI--TPESNVVV 739 (1466)
Q Consensus 665 ~~~~~~v~~i~~~~~~--~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~--~~~~~vvV 739 (1466)
++..+ |..+ +...+ .+. ++.+.+.+|++|+|||+..+++.+| |. +..|+.+.+..+.-+.... .++|..+|
T Consensus 87 i~tEt-Vskv-~~sskpF~l~-td~~~v~~~avI~atGAsAkRl~~p-g~ge~~fWqrGiSaCAVCDGaapifrnk~laV 162 (322)
T KOG0404|consen 87 IITET-VSKV-DLSSKPFKLW-TDARPVTADAVILATGASAKRLHLP-GEGEGEFWQRGISACAVCDGAAPIFRNKPLAV 162 (322)
T ss_pred eeeee-hhhc-cccCCCeEEE-ecCCceeeeeEEEecccceeeeecC-CCCcchHHhcccchhhcccCcchhhcCCeeEE
Confidence 99988 8888 65533 333 3667899999999999999999888 76 3447777777776666544 56899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH-HHHHhcCcEEEccceEEEEEecCCCc-----eEEE
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT-KLFESKGVKFVMKANVSSFEKNEKND-----VTAA 813 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~-~~l~~~gv~~~~~~~v~~i~~~~~~~-----~~~v 813 (1466)
||||.++||-|.+|.+.+.+|++++|++... .+..++ +.++.-+|++++++.+.+.. ++.+. +..+
T Consensus 163 IGGGDsA~EEA~fLtkyaskVyii~Rrd~fR-------As~~Mq~ra~~npnI~v~~nt~~~ea~-gd~~~l~~l~ikn~ 234 (322)
T KOG0404|consen 163 IGGGDSAMEEALFLTKYASKVYIIHRRDHFR-------ASKIMQQRAEKNPNIEVLYNTVAVEAL-GDGKLLNGLRIKNV 234 (322)
T ss_pred EcCcHHHHHHHHHHHhhccEEEEEEEhhhhh-------HHHHHHHHHhcCCCeEEEechhhhhhc-cCcccccceEEEec
Confidence 9999999999999999999999999997543 223333 34556689999999887776 22222 2334
Q ss_pred ECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccC
Q psy2951 814 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 814 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~ 875 (1466)
.+.+...++++-+++++|..|++.+++. .+++|.+|+|++- ..-.||+|++||+||+....
T Consensus 235 ~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 235 KTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred ccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchHH
Confidence 4455568999999999999999999998 7999999999997 56789999999999998654
No 147
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.92 E-value=2e-24 Score=269.38 Aligned_cols=332 Identities=23% Similarity=0.260 Sum_probs=217.3
Q ss_pred eEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc--cccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 539 CFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM--AKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 539 ~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
-|....|+++..||...+..- . .+..+.+....+...+......+ +.+.....++|+|||+||+||++|+.|++
T Consensus 83 p~~~~~grvc~~~ce~~C~r~--~--~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~ 158 (564)
T PRK12771 83 PFPAVMGRVCYHPCESGCNRG--Q--VDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR 158 (564)
T ss_pred CcchHhhCcCCchhHHhccCC--C--CCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 445556888888887642221 1 13334344444433322211111 12234567899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEE-EEeccccccEEEccCCCEEecCEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI-ISDSELNEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v-~~i~~~~~~~v~~~~~~~~~~d~l 695 (1466)
+|++ |+++++.+.+++.. .........+.++.....+.+.+.|++++.++.+ ..+ .... ....||+|
T Consensus 159 ~G~~--V~v~e~~~~~GG~l-~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~-~~~~--------~~~~~D~V 226 (564)
T PRK12771 159 MGHA--VTIFEAGPKLGGMM-RYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI-TLEQ--------LEGEFDAV 226 (564)
T ss_pred CCCe--EEEEecCCCCCCee-eecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC-CHHH--------HHhhCCEE
Confidence 9987 78888876544321 1111101122334444556677889999998855 222 1111 11259999
Q ss_pred EEcCCCCC-CcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccC-CeEEEEeecCccCc
Q psy2951 696 YLATGSSP-RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQ 771 (1466)
Q Consensus 696 viAtG~~~-~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~~~ 771 (1466)
|+|||+.. ..+.++ |.+ +++....+............+++|+|+|+|+++++++..+.+++ .+|++++|.+....
T Consensus 227 i~AtG~~~~~~~~i~-g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~ 305 (564)
T PRK12771 227 FVAIGAQLGKRLPIP-GEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM 305 (564)
T ss_pred EEeeCCCCCCcCCCC-CCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC
Confidence 99999864 455666 654 33322222111111112234899999999999999999888887 78999999875332
Q ss_pred cccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCce----EEEEC----CCC---------cEEecCEEEEcccccc
Q psy2951 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV----TAANL----DNG---------TTIPADLVIVGIGTVL 834 (1466)
Q Consensus 772 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~----~~v~~----~~g---------~~i~~D~vi~a~G~~p 834 (1466)
+....+ + +.+.+.||+++++..+.++...+++.+ ..+.. .+| .++++|+||+|+|+.|
T Consensus 306 ~~~~~~----~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 306 PAHDEE----I-EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred CCCHHH----H-HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 322222 2 234568999999999999974333322 12221 112 3799999999999999
Q ss_pred Ccccccc-CCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 835 NTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 835 ~~~~~~~-~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
++.+++. .++. +++|+|.+|+ +++|+.|+|||+|||+..+. ++..|+.||+.||.+|.
T Consensus 381 ~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~-----------~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 381 DSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR-----------TVTTAIGHGKKAARNID 440 (564)
T ss_pred chhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCch-----------HHHHHHHHHHHHHHHHH
Confidence 9888875 5777 7889999997 78899999999999987543 34789999999999985
No 148
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.92 E-value=9.6e-24 Score=250.20 Aligned_cols=292 Identities=20% Similarity=0.263 Sum_probs=195.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHh--cCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQ--NGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~--~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
...++|+||||||||++||..|++ .|+ +|+|||+.+.++ .......... .....+......++...+++++.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~--~Vtv~E~~p~pg-Glvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv 100 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA--RVDIIERLPTPF-GLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNV 100 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC--eEEEEecCCCCc-ceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCE
Confidence 345789999999999999999987 566 999999998543 2221111000 0111111122334556688888776
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCCC-CcCCCCCCCC--cEEEecCHH-------HHHhhhcccCCCCeEEE
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVE-------DANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~-~~~~~~~g~~--~v~~~~~~~-------~~~~l~~~~~~~~~vvV 1210 (1466)
++. +.+.+++. ...||+||||||+.+ +.+++| |.+ +|+..+++. ++..+...+..+++|+|
T Consensus 101 ~vg-------~dvtl~~L-~~~yDaVIlAtGa~~~~~l~Ip-G~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvV 171 (491)
T PLN02852 101 TLG-------RDVSLSEL-RDLYHVVVLAYGAESDRRLGIP-GEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVV 171 (491)
T ss_pred EEC-------ccccHHHH-hhhCCEEEEecCCCCCCCCCCC-CCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEE
Confidence 332 22445443 347999999999975 778898 876 788765442 22222223346899999
Q ss_pred EcCCHHHHHHHHHHhcC--------------------CC-eEEEEcCCCcCCcccccHH---------------------
Q psy2951 1211 IGSSFIGMEAAAFCASK--------------------VK-SVTVVGRGAVPFQESLGKE--------------------- 1248 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~--------------------g~-~v~vv~~~~~~~~~~~~~~--------------------- 1248 (1466)
||+|++|+++|..|.+. +. +|+++.|....-...-..+
T Consensus 172 IGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~ 251 (491)
T PLN02852 172 LGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTL 251 (491)
T ss_pred ECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhcc
Confidence 99999999999998765 54 6999998762211010111
Q ss_pred ----------------HHHHHHHHHHh---------CCcEEEcCceEEEEEecC--CCcEEEEEcC--------------
Q psy2951 1249 ----------------VGERITKLFES---------KGVKFVMKANVSSFEKNE--KNDVTAANLD-------------- 1287 (1466)
Q Consensus 1249 ----------------~~~~l~~~~~~---------~gv~~~~~~~v~~i~~~~--~g~~~~v~l~-------------- 1287 (1466)
..+.|.+...+ ++|.|++.....+|..++ ++++..+++.
T Consensus 252 ~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~ 331 (491)
T PLN02852 252 SPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQV 331 (491)
T ss_pred ccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcc
Confidence 11223333222 579999999999997222 2567666653
Q ss_pred ---CC--CeeecCEEEEeeccc--cCccc--cccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeee
Q psy2951 1288 ---NG--TTIPADLVIVGIGTV--LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358 (1466)
Q Consensus 1288 ---~g--~~i~~D~vv~a~G~~--p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~ 1358 (1466)
+| ++++||.|+.++|+. |...+ -...|+..+.+|.|.+|..++|+.|+|||+|||.+.|....
T Consensus 332 ~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI-------- 403 (491)
T PLN02852 332 AVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGII-------- 403 (491)
T ss_pred cCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCee--------
Confidence 23 258999999999997 66553 33456777878999999888899999999999998776331
Q ss_pred cHHHHHHHHHHHHHHhcCC
Q psy2951 1359 HYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1359 ~~~~A~~qa~~aa~~i~g~ 1377 (1466)
..++.+|+.+|.+|+.+
T Consensus 404 --~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 404 --GTNLTCAEETVASIAED 420 (491)
T ss_pred --eecHhhHHHHHHHHHHH
Confidence 45777888888888753
No 149
>PRK13984 putative oxidoreductase; Provisional
Probab=99.92 E-value=5.4e-24 Score=268.52 Aligned_cols=279 Identities=21% Similarity=0.288 Sum_probs=194.9
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC-CCchhhccCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
...++|+|||+|+||+++|..|++.|+ +|+|||+++..+.... .+... ...+++..+..+++++.|++++.+++|
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~--~v~vie~~~~~gG~~~~~i~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGY--EVTVYESLSKPGGVMRYGIPSY--RLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCceEeecCCcc--cCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 456789999999999999999999998 9999999876542111 01000 111222233345778889999999855
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHHHHHhhhccc-------CCCCeEEEEc
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIAPHI-------TPESNVVVIG 1212 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~-------~~~~~vvVvG 1212 (1466)
. . + +.+++ ....||+||+|||+. ++.+++| |.+ +++. ..+....+...+ ..+++|+|||
T Consensus 357 ~-~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~-G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIG 425 (604)
T PRK13984 357 G-K-D-----IPLEE-LREKHDAVFLSTGFTLGRSTRIP-GTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIG 425 (604)
T ss_pred C-C-c-----CCHHH-HHhcCCEEEEEcCcCCCccCCCC-CcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEEC
Confidence 2 2 2 11111 235799999999985 6888898 876 5554 233333333221 2368999999
Q ss_pred CCHHHHHHHHHHhcCCC------eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1213 SSFIGMEAAAFCASKVK------SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~------~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
+|++|+|+|..+.+++. +|+++.... ... .++....+ +.+ +.+.||+++++..+.++. .+++++..|++
T Consensus 426 GG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~-~~~~~~~e-~~~-~~~~GV~i~~~~~~~~i~-~~~g~v~~v~~ 500 (604)
T PRK13984 426 GGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFE-EMPADMEE-IEE-GLEEGVVIYPGWGPMEVV-IENDKVKGVKF 500 (604)
T ss_pred CchHHHHHHHHHHhccccccCceEEEEecccc-Ccc-cCCCCHHH-HHH-HHHcCCEEEeCCCCEEEE-ccCCEEEEEEE
Confidence 99999999999988753 788874321 110 12211211 223 346899999999998887 45666666554
Q ss_pred C--------CC-----------CeeecCEEEEeeccccCcccccc---CCceeeCCCeEEeCCCccccCCCEEEeccccc
Q psy2951 1287 D--------NG-----------TTIPADLVIVGIGTVLNTNYLDG---KGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1287 ~--------~g-----------~~i~~D~vv~a~G~~p~~~~~~~---~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~ 1344 (1466)
. +| .++++|.|++|+|..|+++++.. .++..+ +|+|.||++++|++|+|||+|||+.
T Consensus 501 ~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~-~G~i~vd~~~~Ts~~gVfAaGD~~~ 579 (604)
T PRK13984 501 KKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV-RGRILTNEYGQTSIPWLFAGGDIVH 579 (604)
T ss_pred EEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCcccc-CCeEEeCCCCccCCCCEEEecCcCC
Confidence 2 12 36999999999999999987753 245554 6789999999999999999999997
Q ss_pred CCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1345 APLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1345 ~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.+.. ..|+.+|+.||.+|.
T Consensus 580 ~~~~------------v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 580 GPDI------------IHGVADGYWAAEGID 598 (604)
T ss_pred chHH------------HHHHHHHHHHHHHHH
Confidence 6642 469999999999985
No 150
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=4e-23 Score=271.15 Aligned_cols=278 Identities=16% Similarity=0.120 Sum_probs=199.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhc-ccCcccccccCHhHhhhC-CcEEEEceEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-DIKADSILLRTEEFYKDN-DIHVIKGKKI 671 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-gv~~~~~~~v 671 (1466)
..+||+|||||||||+||..|++.|++ |+++|+++.+++......... +.+..++.....+.+... +++++.+++|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~--V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGAR--VILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 468999999999999999999999988 888888766554332111111 122333444455556656 5999999888
Q ss_pred EEeccccccEEEc----------------cCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCC
Q psy2951 672 ISDSELNEKKIKL----------------QDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITP 733 (1466)
Q Consensus 672 ~~i~~~~~~~v~~----------------~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 733 (1466)
..+ ......... +...++.||+||||||+.++.|+++ |.+ +++.........+.. ....
T Consensus 240 ~~i-~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pip-G~~~pgV~~~~~~~~~l~~~-~~~~ 316 (985)
T TIGR01372 240 FGY-YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFA-NNDRPGVMLAGAARTYLNRY-GVAP 316 (985)
T ss_pred EEE-ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCC-CCCCCCcEEchHHHHHHHhh-CcCC
Confidence 877 322111000 0112689999999999999999998 866 676655544432211 1235
Q ss_pred CCcEEEECCChHHHHHHHHHhccCC-eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~ 812 (1466)
+++|+|||+|++|+|+|..|++.|. .|+|+++.+.. ...+.+.++++||++++++.++++.. ++.+..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~ 385 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHVVAATEG--GKRVSG 385 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEE
Confidence 8999999999999999999999994 57888776432 23456778899999999999999983 334444
Q ss_pred EECC----CCcEEecCEEEEccccccCccccccCCceee--CC--CcEEeCCCCCCCCCCeEEeccccccCCcccCCcee
Q psy2951 813 ANLD----NGTTIPADLVIVGIGTVLNTNYLDGKGVELN--GQ--KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNA 884 (1466)
Q Consensus 813 v~~~----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~~--G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 884 (1466)
+.+. ++++++||.|++++|++|++++++.+++.+. +. +++. .|+.|+||++||++.....
T Consensus 386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t~v~gVyaaGD~~g~~~~------- 453 (985)
T TIGR01372 386 VAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GDAVQGCILAGAANGLFGL------- 453 (985)
T ss_pred EEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CCCCCCeEEeeccCCccCH-------
Confidence 4443 5568999999999999999999888776542 21 2221 3779999999999865433
Q ss_pred eeccHHHHHHHHHHHHHHhc
Q psy2951 885 SIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 885 ~~~~~~~A~~~g~~aA~~i~ 904 (1466)
..|+.+|+.||..|+
T Consensus 454 -----~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 454 -----AAALADGAAAGAAAA 468 (985)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 479999999999986
No 151
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.90 E-value=2.7e-22 Score=263.39 Aligned_cols=279 Identities=16% Similarity=0.137 Sum_probs=198.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccC-CcEEEcCCeE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN-DIHVIKGKKI 1142 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~~~v 1142 (1466)
..++|+||||||||++||..|++.|. +|+|||+++.++........... .+..++.....+.+... +++++.+++|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~--~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA--RVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 35789999999999999999999998 99999998765532211111111 11111111222333334 5999999999
Q ss_pred EEeecCCCCeEEe-----------c-----CCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCC
Q psy2951 1143 ISDSELNEKKIKL-----------Q-----DGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITP 1204 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~-----------~-----~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~ 1204 (1466)
..+ +.......+ . .-.++.||+||||||+.++.+++| |.+ +|++........+ ......
T Consensus 240 ~~i-~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pip-G~~~pgV~~~~~~~~~l~-~~~~~~ 316 (985)
T TIGR01372 240 FGY-YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFA-NNDRPGVMLAGAARTYLN-RYGVAP 316 (985)
T ss_pred EEE-ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCC-CCCCCCcEEchHHHHHHH-hhCcCC
Confidence 888 653321111 0 011688999999999999999999 876 7887654444322 112335
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~ 1283 (1466)
+++|+|||+|.+++|+|..|++.|. .|+++++.+.. ...+.+.++++||++++++.++++. + ++++..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~v~~i~-g-~~~v~~ 385 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHVVAATE-G-GKRVSG 385 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCeEEEEe-c-CCcEEE
Confidence 8999999999999999999999995 57888776522 2345677899999999999999998 3 345555
Q ss_pred EEcC----CCCeeecCEEEEeeccccCccccccCCceee--CC-CeEEeCCCccccCCCEEEecccccCCCccCCCceee
Q psy2951 1284 ANLD----NGTTIPADLVIVGIGTVLNTNYLDGKGVELN--GQ-KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356 (1466)
Q Consensus 1284 v~l~----~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~~-G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~ 1356 (1466)
|++. ++++++||.|++++|..|+++++...|..+. .. +... -.|+.|+||++||++.....
T Consensus 386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g~~~~-------- 453 (985)
T TIGR01372 386 VAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAANGLFGL-------- 453 (985)
T ss_pred EEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeeccCCccCH--------
Confidence 6654 4578999999999999999999988775543 21 1111 13668999999998865533
Q ss_pred eecHHHHHHHHHHHHHHhc
Q psy2951 1357 IGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1357 ~~~~~~A~~qa~~aa~~i~ 1375 (1466)
..|..+|+.||..++
T Consensus 454 ----~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 454 ----AAALADGAAAGAAAA 468 (985)
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 579999999998885
No 152
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.88 E-value=1.1e-21 Score=244.88 Aligned_cols=279 Identities=25% Similarity=0.315 Sum_probs=192.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
...++|+|||+|++||++|..|++.|+ +|+++|+++.++.... ..+. ..+.++.....+.+.+.|++++.++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~---~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~ 209 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMR---YGIPAYRLPREVLDAEIQRILDLGVEVRLGVR 209 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeee---ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 456789999999999999999999998 8999999876543211 0000 00111111222456678999988875
Q ss_pred E-EEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHH
Q psy2951 1142 I-ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIG 1217 (1466)
Q Consensus 1142 v-~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g 1217 (1466)
+ ..+ .... + ...||++++|||+. +..+.++ |.+ +++..-.+-...........+++|+|+|+|..+
T Consensus 210 ~~~~~-~~~~----~----~~~~D~Vi~AtG~~~~~~~~i~-g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a 279 (564)
T PRK12771 210 VGEDI-TLEQ----L----EGEFDAVFVAIGAQLGKRLPIP-GEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTA 279 (564)
T ss_pred ECCcC-CHHH----H----HhhCCEEEEeeCCCCCCcCCCC-CCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHH
Confidence 4 333 2111 1 23599999999985 4555666 654 444322111111111122348999999999999
Q ss_pred HHHHHHHhcCC-CeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE-----Ec----C
Q psy2951 1218 MEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA-----NL----D 1287 (1466)
Q Consensus 1218 ~e~a~~l~~~g-~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v-----~l----~ 1287 (1466)
++.+..+.+.+ .+|+++.+.+.........+ + +...+.||+++++..+.++. .+++....+ .+ .
T Consensus 280 ~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~----~-~~a~~~GVki~~~~~~~~i~-~~~~~~~~v~~~~~~~~~~~~ 353 (564)
T PRK12771 280 MDAARTARRLGAEEVTIVYRRTREDMPAHDEE----I-EEALREGVEINWLRTPVEIE-GDENGATGLRVITVEKMELDE 353 (564)
T ss_pred HHHHHHHHHcCCCEEEEEEecCcccCCCCHHH----H-HHHHHcCCEEEecCCcEEEE-cCCCCEEEEEEEEEEecccCC
Confidence 99999888888 67999988764321122222 2 23456899999999999997 343332222 22 2
Q ss_pred CC---------CeeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCC-CccccCCCEEEecccccCCCccCCCceee
Q psy2951 1288 NG---------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356 (1466)
Q Consensus 1288 ~g---------~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p~~~~~~~~~~ 1356 (1466)
+| .++++|.||+|+|..|++++++. .++. +.+|+|.+|+ +++|+.|+|||+|||+..|..
T Consensus 354 ~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~-------- 424 (564)
T PRK12771 354 DGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT-------- 424 (564)
T ss_pred CCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH--------
Confidence 22 37899999999999999888885 6787 7788999997 789999999999999875543
Q ss_pred eecHHHHHHHHHHHHHHhc
Q psy2951 1357 IGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1357 ~~~~~~A~~qa~~aa~~i~ 1375 (1466)
+..|..||+.||.+|.
T Consensus 425 ---v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 425 ---VTTAIGHGKKAARNID 440 (564)
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 3789999999999985
No 153
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.87 E-value=6.2e-21 Score=228.49 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=186.4
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc--------------------------------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL-------------------------------- 639 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~-------------------------------- 639 (1466)
....++|+|||||||||+||+.|++.|++ ++++|++...++.....
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~--v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHT--VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCe--EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 34568999999999999999999999987 77777765443221100
Q ss_pred ----chhcc--------------cCcccccccCHhHhhhCCcE--EEEceEEEEecccc--ccEEEccCC--C--EEecC
Q psy2951 640 ----SKQLD--------------IKADSILLRTEEFYKDNDIH--VIKGKKIISDSELN--EKKIKLQDG--T--SIDFT 693 (1466)
Q Consensus 640 ----~~~~~--------------~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~--~~~v~~~~~--~--~~~~d 693 (1466)
+.... ....++..++..+.+..++. ++++++|+.+ +.. .+.|++.++ . +..||
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V-~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV-EPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEE-eecCCeEEEEEEcCCCceEEEEcC
Confidence 00000 12244566666777778888 8899999998 543 345655432 1 46799
Q ss_pred EEEEcCC--CCCCcCCCCCCCC----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecC
Q psy2951 694 KIYLATG--SSPRTISQADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767 (1466)
Q Consensus 694 ~lviAtG--~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~ 767 (1466)
+||+||| +.|+.|+++ |.+ ...+..+..+.. ..++|+|+|||+|++|+|+|..|.+.+++|+++.|..
T Consensus 164 ~VIvAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCcCCCCC-CcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 9999999 789999999 875 122222222211 2358999999999999999999999999999999975
Q ss_pred ccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC-cee
Q psy2951 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG-VEL 846 (1466)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g-l~~ 846 (1466)
.... .+.+.....++..+..|..+.. ++ .|.+.||+.+++|.||+|||++++.+|++..+ +.+
T Consensus 238 ~~~~-----------~~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v 301 (461)
T PLN02172 238 ESDT-----------YEKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRI 301 (461)
T ss_pred cccc-----------cccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCcccceee
Confidence 3210 0111122334455666666652 22 47889999999999999999999999987533 222
Q ss_pred eCCCcEEeCCC-CCCC-CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 847 NGQKAVVVNEY-LETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 847 ~~~G~i~vd~~-~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+++.-...-.+ +-.. .|+++.+|=.... ..+..+..|++.+|+-+.|+.
T Consensus 302 ~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~------------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 302 DENRVEPLYKHVFPPALAPGLSFIGLPAMG------------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred CCCcchhhHHhhcCCCCCCcEEEEeccccc------------cCchhHHHHHHHHHHHHcCCC
Confidence 22210000011 1122 4899999943211 123579999999999988864
No 154
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.87 E-value=3e-21 Score=231.25 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=183.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC-----------------------------Cchhh
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-----------------------------LSKQL 1114 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~-----------------------------l~~~~ 1114 (1466)
...++|+|||||+|||+||..|++.|. +++++|+++..+..... +++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~--~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGH--TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC--eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 345789999999999999999999998 99999998754421100 00000
Q ss_pred ------ccCc---------------ccccccChhhhccCCcE--EEcCCeEEEeecCCCC--eEEecCC--c--EEecCe
Q psy2951 1115 ------DIKA---------------DSILLRTEEFYKDNDIH--VIKGKKIISDSELNEK--KIKLQDG--T--SIDFTK 1165 (1466)
Q Consensus 1115 ------~~~~---------------~~~~~~~~~~~~~~~v~--~~~~~~v~~i~d~~~~--~v~~~~g--~--~~~yd~ 1165 (1466)
.... .++.....++.+.+++. ++++++|++| ++..+ .|++.++ . +..||+
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V-~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV-EPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEE-eecCCeEEEEEEcCCCceEEEEcCE
Confidence 0000 00111112344456777 8899999999 87544 4555432 1 457999
Q ss_pred EEEecC--CCCCcCCCCCCCC---c-EEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCc
Q psy2951 1166 IYLATG--SSPRTISQADGVN---K-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 1239 (1466)
Q Consensus 1166 lvlAtG--~~~~~~~~~~g~~---~-v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~ 1239 (1466)
||+||| +.|+.|++| |++ + ..+..++.+...+ .+|+|+|||+|.+|+|+|..|.+.+.+|+++.|...
T Consensus 165 VIvAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~~~~~-----~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRVPDPF-----KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred EEEeccCCCCCcCCCCC-CcccCCceEEEecccCCcccc-----CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 999999 589999999 876 2 2222223332222 389999999999999999999999999999998753
Q ss_pred CCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCC-ceee
Q psy2951 1240 PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG-VELN 1318 (1466)
Q Consensus 1240 ~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~g-l~~~ 1318 (1466)
... + ..+......+..+..|..+. +++ .|.+.||+++++|.||+|||+.|+.+||+..+ +.++
T Consensus 239 ~~~----------~-~~~~~~~~~v~~~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~ 302 (461)
T PLN02172 239 SDT----------Y-EKLPVPQNNLWMHSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRID 302 (461)
T ss_pred ccc----------c-ccCcCCCCceEECCccccee--cCC---eEEECCCCCccCCEEEECCcCCccccccCcccceeeC
Confidence 210 0 00111223445566677665 233 38899999999999999999999999987533 2222
Q ss_pred CCCeE--EeCCCcccc-CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1319 GQKAV--VVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1319 ~~G~i--~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
++. + +-.+-+-.. .|+++.+|=... ...|..+..||+.+|+.+.|+..
T Consensus 303 ~~~-v~~Ly~~~f~~~~~p~LafiG~~~~------------~~~f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 303 ENR-VEPLYKHVFPPALAPGLSFIGLPAM------------GIQFVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred CCc-chhhHHhhcCCCCCCcEEEEecccc------------ccCchhHHHHHHHHHHHHcCCCC
Confidence 211 1 000112222 378888884311 22347899999999999999754
No 155
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=8.1e-22 Score=231.22 Aligned_cols=338 Identities=22% Similarity=0.247 Sum_probs=227.1
Q ss_pred EECCCCeeecCC--CCCCCCeEEEEEEcCeEEEEEcccchhcccc---ccccccccCCCCCCeEEEEcCchHHHHHHHHH
Q psy2951 540 FNIATGDIEDFP--GMDSLPCYKVTIQNDDSVVVQARKDELKNKK---RKLPMAKLSSGNKDTFIVVGGGPSGATCVETL 614 (1466)
Q Consensus 540 f~~~~G~~~~~p--~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l 614 (1466)
|...+|+++..+ |... |... .++..+.+......+++.+ ++-+...+...+.++|+|||||||||++|..|
T Consensus 67 ~p~~~gRvcp~~~~ceg~--cv~~--~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L 142 (457)
T COG0493 67 LPAITGRVCPLGNLCEGA--CVLG--IEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDL 142 (457)
T ss_pred CccccCccCCCCCceeee--eeec--cCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHH
Confidence 334456666555 4432 1111 1344455555555555544 23333333345569999999999999999999
Q ss_pred HHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCE
Q psy2951 615 RQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTK 694 (1466)
Q Consensus 615 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~ 694 (1466)
++.|+. |+++++.+..++ ...+...-.....++..+..+.+++.|++|+.++++-.. ++++ ...-+||+
T Consensus 143 ~~~G~~--Vtv~e~~~~~GG-ll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~-------it~~-~L~~e~Da 211 (457)
T COG0493 143 SRAGHD--VTVFERVALDGG-LLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD-------ITLE-ELLKEYDA 211 (457)
T ss_pred HhCCCe--EEEeCCcCCCce-eEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc-------CCHH-HHHHhhCE
Confidence 999998 677777654332 222222222455678888899999999999999966321 1111 11235799
Q ss_pred EEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHh---hcc------cCCCCCcEEEECCChHHHHHHHHHhccCC-eEE
Q psy2951 695 IYLATGS-SPRTISQADGVN--KVFYLRTVEDANN---IAP------HITPESNVVVIGSSFIGMEAAAFCASKVK-SVT 761 (1466)
Q Consensus 695 lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~---~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~ 761 (1466)
+++|||+ .|+..+++ |.+ +++...+...... +.. ...++|+|+|||+|.++++++....+.|. +|+
T Consensus 212 v~l~~G~~~~~~l~i~-g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~ 290 (457)
T COG0493 212 VFLATGAGKPRPLDIP-GEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVT 290 (457)
T ss_pred EEEeccccCCCCCCCC-CcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEE
Confidence 9999995 68888888 776 4433222221111 110 01135999999999999999988888876 788
Q ss_pred EEeecCcc-CccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC-------------------C--c
Q psy2951 762 VVGRGAVP-FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-------------------G--T 819 (1466)
Q Consensus 762 lv~~~~~~-~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~-------------------g--~ 819 (1466)
.+++...- -....+........+...++|+.+.+.....++..+++|++..+.+.. | .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~ 370 (457)
T COG0493 291 CFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEK 370 (457)
T ss_pred EeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceE
Confidence 88643322 111122223344556778889999999999999877777776553311 2 2
Q ss_pred EEecCEEEEccccccCccc-c-ccCCceeeCCCcEEeCCCC-CCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHH
Q psy2951 820 TIPADLVIVGIGTVLNTNY-L-DGKGVELNGQKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896 (1466)
Q Consensus 820 ~i~~D~vi~a~G~~p~~~~-~-~~~gl~~~~~G~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g 896 (1466)
++++|+|+.|+|+.++... . ...++..+..|.+.+++.+ +|+.|++||.||+....... ..|+.+|
T Consensus 371 ~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~v-----------v~ai~eG 439 (457)
T COG0493 371 TDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALV-----------VWAIAEG 439 (457)
T ss_pred EehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhh-----------hhHHhhc
Confidence 5789999999999887443 2 2336788889999999988 99999999999999864433 5899999
Q ss_pred HHHHHHhc
Q psy2951 897 RIAALNMV 904 (1466)
Q Consensus 897 ~~aA~~i~ 904 (1466)
+.+|+.|-
T Consensus 440 r~aak~i~ 447 (457)
T COG0493 440 REAAKAID 447 (457)
T ss_pred hHHHHhhh
Confidence 99998874
No 156
>KOG0399|consensus
Probab=99.84 E-value=4.5e-21 Score=225.79 Aligned_cols=363 Identities=18% Similarity=0.251 Sum_probs=221.8
Q ss_pred EEEEeCCCCCCCcccCCceecCCEEEccCC------------------------CceEECCCCeeecCCCCCCCCeEEEE
Q psy2951 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWH------------------------GACFNIATGDIEDFPGMDSLPCYKVT 562 (1466)
Q Consensus 507 ~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H------------------------~~~f~~~~G~~~~~p~~~~l~~~~v~ 562 (1466)
+.-..++|...|.|++.+. .+ ||.- -..|.--||++|..||.+.+ +..+
T Consensus 1679 ~~~qtarcmdcgtpfc~~~-~g----cpl~n~ip~~nelvfk~~wk~al~~ll~tnnfpeftgrvcpapcegac-tlgi- 1751 (2142)
T KOG0399|consen 1679 LREQTARCMDCGTPFCQSD-SG----CPLGNIIPKFNELVFKNQWKEALEQLLETNNFPEFTGRVCPAPCEGAC-TLGI- 1751 (2142)
T ss_pred hHHHhhHHhcCCCccccCC-CC----CccccccccHHHHHHHHHHHHHHHHHHhhCCCccccCccCCCCcCcce-eeec-
Confidence 3334578888888876652 12 4432 22455568999999998752 2332
Q ss_pred EEcCeEEEEEcccchhcccc---ccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc
Q psy2951 563 IQNDDSVVVQARKDELKNKK---RKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL 639 (1466)
Q Consensus 563 i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~ 639 (1466)
+ ...+.+...+..+.+++ +|..+.++...+.++|.|||.|||||+||-.|-+.||. |+++|+....++-...-
T Consensus 1752 i--e~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~--v~vyer~dr~ggll~yg 1827 (2142)
T KOG0399|consen 1752 I--EPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHT--VTVYERSDRVGGLLMYG 1827 (2142)
T ss_pred c--cCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcE--EEEEEecCCcCceeeec
Confidence 1 23344444555555544 56555666667889999999999999999999999998 66666665444221110
Q ss_pred chhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC--cEE
Q psy2951 640 SKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVF 716 (1466)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~ 716 (1466)
..... ....+..+..+.+.+.||+|+.++++..- +.+ |+-.-.+|++|+|+|+ .|+.+++| |-+ ++.
T Consensus 1828 ipnmk-ldk~vv~rrv~ll~~egi~f~tn~eigk~-------vs~-d~l~~~~daiv~a~gst~prdlpv~-grd~kgv~ 1897 (2142)
T KOG0399|consen 1828 IPNMK-LDKFVVQRRVDLLEQEGIRFVTNTEIGKH-------VSL-DELKKENDAIVLATGSTTPRDLPVP-GRDLKGVH 1897 (2142)
T ss_pred CCccc-hhHHHHHHHHHHHHhhCceEEeecccccc-------ccH-HHHhhccCeEEEEeCCCCCcCCCCC-CccccccH
Confidence 01111 12235667778889999999999965321 322 3445579999999996 59999999 877 332
Q ss_pred EecCHHHHH--hh-------cccCCCCCcEEEECCChHHHHHHHHHhccCCe-EEEEeecCccCc--------cccC---
Q psy2951 717 YLRTVEDAN--NI-------APHITPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQ--------ESLG--- 775 (1466)
Q Consensus 717 ~~~~~~~~~--~~-------~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~~~--------~~~~--- 775 (1466)
+.-.+.+.. .+ ...-.++|+|+|||||.+|-+|-..-.++|.+ |.-++--|.+.. ++.+
T Consensus 1898 fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvf 1977 (2142)
T KOG0399|consen 1898 FAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVF 1977 (2142)
T ss_pred HHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEE
Confidence 211111100 00 00113689999999999999998777777643 332322221100 1111
Q ss_pred -HHHH-HHHHHHHHhcCcEEEccc-----------------eEEEE--EecCCCceEEEECCC-CcEEecCEEEEccccc
Q psy2951 776 -KEVG-ERITKLFESKGVKFVMKA-----------------NVSSF--EKNEKNDVTAANLDN-GTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 -~~~~-~~~~~~l~~~gv~~~~~~-----------------~v~~i--~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~ 833 (1466)
-+.. +...+. .|-...+.+ +.+++ ++++.+.-.-++..+ .+.++||+||+|.|+.
T Consensus 1978 rvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~ 2054 (2142)
T KOG0399|consen 1978 RVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFV 2054 (2142)
T ss_pred EeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeecccc
Confidence 0000 111111 122221111 12222 122223222223322 3478999999999997
Q ss_pred cC-ccccccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 834 LN-TNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 834 p~-~~~~~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.. ....++++++.|+++.|.+. +.+.|++++|||+|||....... ..|+++|+.+|+.+-
T Consensus 2055 gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslv-----------vwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2055 GPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLV-----------VWAIQEGRQAARQVD 2116 (2142)
T ss_pred CcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEE-----------EEEehhhhHHHHHHH
Confidence 54 44678889999988777664 66899999999999998776554 469999999998873
No 157
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.84 E-value=2.4e-20 Score=229.68 Aligned_cols=267 Identities=15% Similarity=0.145 Sum_probs=165.9
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC--C-------------------------CCccchhc
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--D-------------------------RVKLSKQL 643 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~--~-------------------------~~~~~~~~ 643 (1466)
.+.+.++|+|||||||||+||++|++.|++ |+++|+....+. . ...+....
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~--Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~ 456 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHN--VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITV 456 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCe--EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccc
Confidence 345789999999999999999999999999 777776432111 1 00010000
Q ss_pred ccCcccccccCHhHhhhC--CcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC--cEEEe
Q psy2951 644 DIKADSILLRTEEFYKDN--DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYL 718 (1466)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~--gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~~~ 718 (1466)
.. +.+.... ...+.+. +++++.|..+. . .++.++-....||+||||||+ +|+.+++| |.+ +++..
T Consensus 457 R~-~k~~l~~-i~~il~~g~~v~~~~gv~lG-~------dit~edl~~~gyDAV~IATGA~kpr~L~IP-Geda~GV~sA 526 (1028)
T PRK06567 457 RW-DKNNLDI-LRLILERNNNFKYYDGVALD-F------NITKEQAFDLGFDHIAFCIGAGQPKVLDIE-NFEAKGVKTA 526 (1028)
T ss_pred cc-hHHHHHH-HHHHHhcCCceEEECCeEEC-c------cCCHHHHhhcCCCEEEEeCCCCCCCCCCCC-CccCCCeEEH
Confidence 00 1111111 1122223 46666676431 1 122222234679999999999 79999999 876 55544
Q ss_pred cCHHHHHhhcc--------cCCCCCcEEEECCChHHHHHHHHHhc-----------------------------------
Q psy2951 719 RTVEDANNIAP--------HITPESNVVVIGSSFIGMEAAAFCAS----------------------------------- 755 (1466)
Q Consensus 719 ~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g~e~A~~l~~----------------------------------- 755 (1466)
.++....+... ....+++|+|||||++|+|+|.....
T Consensus 527 ~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 527 SDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred HHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence 33222211111 01236899999999999999983221
Q ss_pred ----------------cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---
Q psy2951 756 ----------------KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--- 816 (1466)
Q Consensus 756 ----------------~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~--- 816 (1466)
.|. |++++|....-++....+ .+.+ +...+.||+|+.+..+.+|..++++++..+++.
T Consensus 607 ~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~-~eEv-~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~ 683 (1028)
T PRK06567 607 FKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLN-HEEL-IYALALGVDFKENMQPLRINVDKYGHVESVEFENRN 683 (1028)
T ss_pred hcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCC-HHHH-HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEe
Confidence 222 999999875444432101 1222 234567999999999999975556666644332
Q ss_pred ---------------------------CCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 817 ---------------------------NGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 817 ---------------------------~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
...+|+||.||+|+|..||+.+.. .+..+-++.+++|+.
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~-------------~~~s~~~d~~~~f~G- 749 (1028)
T PRK06567 684 RHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE-------------DKYSYFGDCNPKYSG- 749 (1028)
T ss_pred cccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-------------cccccccCCCCcccc-
Confidence 114789999999999999987631 111233455666665
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+...|+.+|+.++.+|.
T Consensus 750 ------------------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 750 ------------------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ------------------HHHHHHHHHHhHHHHHH
Confidence 23589999999999995
No 158
>KOG3851|consensus
Probab=99.82 E-value=2.7e-20 Score=193.23 Aligned_cols=295 Identities=15% Similarity=0.161 Sum_probs=204.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
.+...+++|||||.+|+++|..+.++-..++|-++|.+.++.|++...-.-.. .+.+. ..+....+-..+..++.. +
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~-srr~~a~liP~~a~wi~e-k 113 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDS-SRRKQASLIPKGATWIKE-K 113 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhh-ccCcccccccCCcHHHHH-H
Confidence 34567899999999999999999776556899999999998888654211111 11111 111111222235555553 4
Q ss_pred EEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC------cEEEecCHHHHHh---hhcccCCCCeEEEEc
Q psy2951 1142 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANN---IAPHITPESNVVVIG 1212 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~------~v~~~~~~~~~~~---l~~~~~~~~~vvVvG 1212 (1466)
|..+ +|++.+|.+++|++|+||+||||+|..-+...|+ |+. +|....+....++ .....+.|..+.---
T Consensus 114 v~~f-~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik-Gl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfP 191 (446)
T KOG3851|consen 114 VKEF-NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK-GLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFP 191 (446)
T ss_pred HHhc-CCCcCeEEccCCcEEeeeeEeeeeeceeccchhc-ChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecC
Confidence 8899 9999999999999999999999999987777776 654 5554444444333 333445566666666
Q ss_pred CCHHHHH---------HHHHHhcCCC--eEEEEcCCCcCCccccc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q psy2951 1213 SSFIGME---------AAAFCASKVK--SVTVVGRGAVPFQESLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280 (1466)
Q Consensus 1213 ~g~~g~e---------~a~~l~~~g~--~v~vv~~~~~~~~~~~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~ 1280 (1466)
++.+-|. .-..+|++|. ++.+++... |+..++ ...++.|.+..++++|++.+.....++. ..+..
T Consensus 192 ntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~-~~~~~ 268 (446)
T KOG3851|consen 192 NTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVR-TNDRK 268 (446)
T ss_pred CCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEe-ccchh
Confidence 6555443 2246788876 466666544 334556 6678889999999999999999999987 44433
Q ss_pred EEEEEcCC-C--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeC-CCcccc-CCCEEEecccccCCCccCCCcee
Q psy2951 1281 VTAANLDN-G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETN-VPGVYAGGDIAYAPLHSFYNKNA 1355 (1466)
Q Consensus 1281 ~~~v~l~~-g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd-~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~ 1355 (1466)
.+.-.|++ | ++++++++.+.....+. +.++.+.+. |.-||+.|| .++|+. +||||++|||...|+..+.
T Consensus 269 AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~a-dktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTa---- 342 (446)
T KOG3851|consen 269 AVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLA-DKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTA---- 342 (446)
T ss_pred hHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCccc-CcccceecChhhhccccCCCceeeccccCCCchhhH----
Confidence 32223444 5 57899999987666555 567777764 667999999 678875 9999999999999987632
Q ss_pred eeecHHHHHHHHHHHHHHhc
Q psy2951 1356 SIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1356 ~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
..+..|..++-+|+.
T Consensus 343 -----AAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 343 -----AAVAAQSPVVDKNLT 357 (446)
T ss_pred -----HHHHhcCchhhhhHH
Confidence 455667777777766
No 159
>KOG2755|consensus
Probab=99.81 E-value=1.2e-19 Score=183.73 Aligned_cols=267 Identities=21% Similarity=0.351 Sum_probs=182.7
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCCCCCchhhccCcccccccCh---hhhccCCcEEEcCCeE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDRVKLSKQLDIKADSILLRTE---EFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~v 1142 (1466)
+.+|||||+||.++|..|+..-...+|.|+...+..- -..-+.++++. .+..+.. +...+.. + ..+. |
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yle----kfdv~eq~~~elg~~f~-~-~~~~-v 73 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLE----KFDVKEQNCHELGPDFR-R-FLND-V 73 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHH----hcCccccchhhhcccHH-H-HHHh-h
Confidence 3689999999999999999998888999998765311 00011222221 1111110 1111111 1 2233 6
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
..+ +...+.+.+.+|..+.|++|+++||.+|...- . |.+ .+...|+.+.++.++..+.+.|+|+|+|.|-+++|++
T Consensus 74 ~~~-~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~-E-~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~ 150 (334)
T KOG2755|consen 74 VTW-DSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV-E-GINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELT 150 (334)
T ss_pred hhh-ccccceEEecCCceeeEEEEEEecCCCcceee-c-CCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHH
Confidence 777 88889999999999999999999999998752 2 334 6777889999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCC----------------------------------------
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG---------------------------------------- 1261 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------------------------------- 1261 (1466)
..+. +.+|++....+......+++.+.+++...++..+
T Consensus 151 yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g 228 (334)
T KOG2755|consen 151 YELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQG 228 (334)
T ss_pred HHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhccccc
Confidence 9885 5688888777766665666666655544441100
Q ss_pred --------cEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc
Q psy2951 1262 --------VKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET 1331 (1466)
Q Consensus 1262 --------v~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t 1331 (1466)
+.+..+.-+....+.+...+.......| .++.||.++.|+|+.||.+|+-..-++...+|++.||+.|+|
T Consensus 229 ~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~t 308 (334)
T KOG2755|consen 229 ISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMET 308 (334)
T ss_pred chhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccc
Confidence 0000011111111011111111111112 367899999999999999987777788888889999999999
Q ss_pred cCCCEEEecccccCC
Q psy2951 1332 NVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1332 ~~~~v~a~GD~a~~p 1346 (1466)
+.|++||+||++...
T Consensus 309 slpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 309 SLPDVFAAGDVCTTT 323 (334)
T ss_pred cccceeeecceeccC
Confidence 999999999988743
No 160
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.80 E-value=5.6e-19 Score=214.03 Aligned_cols=283 Identities=17% Similarity=0.264 Sum_probs=159.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC------------------CCchhhccCcccccc-----
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV------------------KLSKQLDIKADSILL----- 1123 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~------------------~l~~~~~~~~~~~~~----- 1123 (1466)
++|+|||||++||++|+.|++.|+ +++++|+++..+.-.. ..++... ...+++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~--~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~-~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL--EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMM-AFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGS-CCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC--CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHh-cCCCcCCCCCCC
Confidence 689999999999999999999999 9999999987652211 1222221 0111111
Q ss_pred ----------cChhhhccCCc--EEEcCCeEEEeecCC-------CCeEEecC-Cc--EEecCeEEEecCC--CCCcCC-
Q psy2951 1124 ----------RTEEFYKDNDI--HVIKGKKIISDSELN-------EKKIKLQD-GT--SIDFTKIYLATGS--SPRTIS- 1178 (1466)
Q Consensus 1124 ----------~~~~~~~~~~v--~~~~~~~v~~i~d~~-------~~~v~~~~-g~--~~~yd~lvlAtG~--~~~~~~- 1178 (1466)
....+.+.+++ .++++++|+++ ... ...|++.+ |. +..||+||+|||. .|+.|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v-~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSV-ERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEE-EEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB---
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEe-eeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChh
Confidence 11224444555 58899999999 532 23566653 32 3569999999996 788774
Q ss_pred -CCCCCC----cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC-Cccc--------
Q psy2951 1179 -QADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQES-------- 1244 (1466)
Q Consensus 1179 -~~~g~~----~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~-~~~~-------- 1244 (1466)
+| |++ .+.+.+++.+...++ +|+|+|||+|.+|+++|..+.+...+|++..|.... +++.
T Consensus 158 ~~~-G~e~F~G~i~HS~~yr~~~~f~-----gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D 231 (531)
T PF00743_consen 158 SFP-GLEKFKGEIIHSKDYRDPEPFK-----GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFD 231 (531)
T ss_dssp --C-TGGGHCSEEEEGGG--TGGGGT-----TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-----------------
T ss_pred hhh-hhhcCCeeEEccccCcChhhcC-----CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccc
Confidence 78 887 466666666655444 999999999999999999999999999998877522 1111
Q ss_pred --------------ccHHHHHHHH---------------------------------HHHHhCCcEEEcCceEEEEEecC
Q psy2951 1245 --------------LGKEVGERIT---------------------------------KLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1245 --------------~~~~~~~~l~---------------------------------~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
++..+.+++. ..+....|++. ..|.+++ +
T Consensus 232 ~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~--~ 307 (531)
T PF00743_consen 232 MVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFT--E 307 (531)
T ss_dssp -------------------------------------------------------------------E--E-EEEE---S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc--c
Confidence 1111111111 11111112221 2355554 2
Q ss_pred CCcEEEEEcCCCCee-ecCEEEEeeccccCccccccCCceeeCCCeEEeCCC-ccc--cCCCEEEecccccCCCccCCCc
Q psy2951 1278 KNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LET--NVPGVYAGGDIAYAPLHSFYNK 1353 (1466)
Q Consensus 1278 ~g~~~~v~l~~g~~i-~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t--~~~~v~a~GD~a~~p~~~~~~~ 1353 (1466)
+ +|.+.||+++ ++|.||+|||+....+||.+.-+....+ .+..-.+ +-. .+|.+..+|=+... .
T Consensus 308 ~----~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~-~~~LYk~vfp~~~~~ptLafIG~~~~~-g------ 375 (531)
T PF00743_consen 308 N----SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDN-RVRLYKHVFPPNLDHPTLAFIGLVQPF-G------ 375 (531)
T ss_dssp S----EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SS-SSSEETTTEETETTSTTEEESS-SBSS-S------
T ss_pred c----ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc-c------
Confidence 2 4789999876 7999999999999999998765544432 1211122 211 35788888854321 1
Q ss_pred eeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1354 NASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1354 ~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
..+..+..||+.+|+-+.|...
T Consensus 376 ----~~fp~~ElQArw~a~v~sG~~~ 397 (531)
T PF00743_consen 376 ----SIFPIFELQARWAARVFSGRVK 397 (531)
T ss_dssp -----HHHHHHHHHHHHHHHHTTSS-
T ss_pred ----cccccccccccccccccccccc
Confidence 1247899999999999998654
No 161
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.80 E-value=6.3e-19 Score=193.81 Aligned_cols=359 Identities=20% Similarity=0.281 Sum_probs=227.9
Q ss_pred eCCCCCCCcccCCceec--CCEEEcc----CCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccch-------
Q psy2951 511 GTKCSHYGAPLVKGSLG--DGRVRCP----WHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDE------- 577 (1466)
Q Consensus 511 ~~~C~H~~~~l~~g~~~--~~~~~Cp----~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~------- 577 (1466)
.-.|...|..+....+. +..++-. .|...|.+. +...--..++++..|++..+..+
T Consensus 36 ~~~CSd~gqe~i~~dikeldrvVvaACsPr~he~~Frln-----------~y~~E~aniREqcswvH~~dAtekA~dllr 104 (622)
T COG1148 36 PYMCSDPGQEMIKKDIKELDRVVVAACSPRLHEPTFRLN-----------PYYLEIANIREQCSWVHMDDATEKAKDLLR 104 (622)
T ss_pred eeccCchhHHHHHHHHHHhhheEEEecCCcccCCceeeC-----------HHHhhhhhHhhcceeeccchHHHHHHHHHH
Confidence 34588888877554443 3344433 377777621 11122233566788888766221
Q ss_pred --hccccccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccC---cccccc
Q psy2951 578 --LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK---ADSILL 652 (1466)
Q Consensus 578 --~~~~~~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 652 (1466)
+.+.+..+++........++++|||||+||++||+.|++.|++ ++++|+++.+++....+.+.+... ..-+..
T Consensus 105 ~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~--v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP 182 (622)
T COG1148 105 MAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFK--VYLVEKEPSIGGRMAKLNKTFPTNDCSICILAP 182 (622)
T ss_pred HHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCe--EEEEecCCcccccHHhhhccCCCcccchhhccc
Confidence 1111133344444455679999999999999999999999998 999999999998877777666522 222333
Q ss_pred cCHhHhhhCCcEEEEceEEEEeccc-cccEEE------------------------------------------------
Q psy2951 653 RTEEFYKDNDIHVIKGKKIISDSEL-NEKKIK------------------------------------------------ 683 (1466)
Q Consensus 653 ~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~------------------------------------------------ 683 (1466)
.+.+.....+|++++.++|..+... .+++|+
T Consensus 183 ~m~~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaV 262 (622)
T COG1148 183 KMVEVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAV 262 (622)
T ss_pred hhhhhccCCceeeeeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhc
Confidence 3444444558888888888775210 011111
Q ss_pred ---------------------------ccC-C--CEEecCEEEEcCCCCCCcCCCCC--CCC---cEEEecCHHHHHhhc
Q psy2951 684 ---------------------------LQD-G--TSIDFTKIYLATGSSPRTISQAD--GVN---KVFYLRTVEDANNIA 728 (1466)
Q Consensus 684 ---------------------------~~~-~--~~~~~d~lviAtG~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~ 728 (1466)
.+. + -+++..++|+|||-+++.+.-.. |.. ++.+. .+.+++.
T Consensus 263 p~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml 339 (622)
T COG1148 263 PLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERML 339 (622)
T ss_pred ccccccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHh
Confidence 011 1 15778899999998877654221 322 44332 2223222
Q ss_pred cc-------------CCCCCcEEEE---CCCh--------------HHHHHHHHHhcc--CCeEEEEeecCccCccccCH
Q psy2951 729 PH-------------ITPESNVVVI---GSSF--------------IGMEAAAFCASK--VKSVTVVGRGAVPFQESLGK 776 (1466)
Q Consensus 729 ~~-------------~~~~~~vvVv---G~G~--------------~g~e~A~~l~~~--g~~V~lv~~~~~~~~~~~~~ 776 (1466)
.. -.++|+|+.| |+-. .++..|..++++ ..+|++.+.+-+. ++.
T Consensus 340 ~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~ 415 (622)
T COG1148 340 NPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGK 415 (622)
T ss_pred ccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCc
Confidence 10 1357888886 5543 234455566655 5789999988643 445
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC---C--cEEecCEEEEccccccCcc---ccccCCceeeC
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---G--TTIPADLVIVGIGTVLNTN---YLDGKGVELNG 848 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~~ 848 (1466)
...+++.+.-++.||+|+.+. +.+|.+.++++ ..|...| | .++++|+|++++|+.|... +.+.+||+.++
T Consensus 416 ~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~ 493 (622)
T COG1148 416 DYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDE 493 (622)
T ss_pred cHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCC
Confidence 555666666668899999765 66676555555 2343333 3 3789999999999998643 56778999999
Q ss_pred CCcEEeC-CCC---CCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 849 QKAVVVN-EYL---ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 849 ~G~i~vd-~~~---~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
+||+... +.+ +|+.++||.+| |+..|... +.++.||..||...
T Consensus 494 ~gF~k~~hPkl~pv~s~~~GIflAG-~aqgPkdI-----------~~siaqa~aAA~kA 540 (622)
T COG1148 494 DGFLKEAHPKLRPVDSNRDGIFLAG-AAQGPKDI-----------ADSIAQAKAAAAKA 540 (622)
T ss_pred CCccccCCCCcccccccCCcEEEee-cccCCccH-----------HHHHHHhHHHHHHH
Confidence 9999886 444 46899999999 44444433 47888888777654
No 162
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.79 E-value=2.1e-18 Score=209.06 Aligned_cols=287 Identities=17% Similarity=0.241 Sum_probs=161.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------------------cchhc--------c----
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------------------LSKQL--------D---- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------------------~~~~~--------~---- 644 (1466)
+++|+|||||++||++|..|.+.|++ ++++|+++.+++.... .++.. .
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~--~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLE--VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-E--EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC--CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 47999999999999999999999987 7788887665533210 00000 0
Q ss_pred --cCcccccccCHhHhhhCCc--EEEEceEEEEeccc------cccEEEccCC---CEEecCEEEEcCC--CCCCcCC--
Q psy2951 645 --IKADSILLRTEEFYKDNDI--HVIKGKKIISDSEL------NEKKIKLQDG---TSIDFTKIYLATG--SSPRTIS-- 707 (1466)
Q Consensus 645 --~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~------~~~~v~~~~~---~~~~~d~lviAtG--~~~~~~~-- 707 (1466)
....++..++..+.+++++ .++++++|.++... ..+.|++.++ ++..||+||+||| +.|+.|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 1234566667777777777 48889999988321 2356766543 2456999999999 5788885
Q ss_pred CCCCCC----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccC--------
Q psy2951 708 QADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG-------- 775 (1466)
Q Consensus 708 ~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~-------- 775 (1466)
+| |++ .+++.++..+... .++|+|+|||+|++|+|+|..|++.+++|++..|+.....+...
T Consensus 159 ~~-G~e~F~G~i~HS~~yr~~~~-----f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~ 232 (531)
T PF00743_consen 159 FP-GLEKFKGEIIHSKDYRDPEP-----FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDM 232 (531)
T ss_dssp -C-TGGGHCSEEEEGGG--TGGG-----GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------------------
T ss_pred hh-hhhcCCeeEEccccCcChhh-----cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccc
Confidence 77 876 4555555544332 24999999999999999999999999999999888643222111
Q ss_pred ---------------HHHHHHH-HHHHH------hcCcEEE------------------------ccceEEEEEecCCCc
Q psy2951 776 ---------------KEVGERI-TKLFE------SKGVKFV------------------------MKANVSSFEKNEKND 809 (1466)
Q Consensus 776 ---------------~~~~~~~-~~~l~------~~gv~~~------------------------~~~~v~~i~~~~~~~ 809 (1466)
..+...+ .+.+. ..|+.-. ....|.++++
T Consensus 233 ~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~----- 307 (531)
T PF00743_consen 233 VFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTE----- 307 (531)
T ss_dssp ------------------------------------------------------------------EE-EEEE-S-----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence 0000110 00110 0111000 0112333331
Q ss_pred eEEEECCCCcEE-ecCEEEEccccccCccccccCCceeeCCCcEEeCCCC---CCCCCCeEEeccccccCCcccCCceee
Q psy2951 810 VTAANLDNGTTI-PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL---ETNVPGVYAGGDIAYAPLHSFYNKNAS 885 (1466)
Q Consensus 810 ~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~---~t~~~~iya~GD~~~~~~~~~~~~~~~ 885 (1466)
..+.+.||+++ ++|.||+|||++...+++++.-+...++ .+..-.++ ....|.+..+|=+.. ..
T Consensus 308 -~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~-~~~LYk~vfp~~~~~ptLafIG~~~~-~g--------- 375 (531)
T PF00743_consen 308 -NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDN-RVRLYKHVFPPNLDHPTLAFIGLVQP-FG--------- 375 (531)
T ss_dssp -SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SS-SSSEETTTEETETTSTTEEESS-SBS-SS---------
T ss_pred -cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc-cc---------
Confidence 15678899875 6999999999999988887654443322 22121221 123578999984421 11
Q ss_pred eccHHHHHHHHHHHHHHhccCC
Q psy2951 886 IGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 886 ~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
.....+..|++.+|+-+.|+.
T Consensus 376 -~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 -SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp --HHHHHHHHHHHHHHHHTTSS
T ss_pred -ccccccccccccccccccccc
Confidence 123579999999999988764
No 163
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.76 E-value=3.5e-18 Score=200.77 Aligned_cols=320 Identities=23% Similarity=0.265 Sum_probs=211.1
Q ss_pred eeeec-cCcchhhhhhhhhhhcccCcc---ccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--CC
Q psy2951 8 KVTIQ-NDDSVVVQARKDELKNKKRKL---PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--LP 81 (1466)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--~~ 81 (1466)
.|+.. ++.|++|..+.++......++ +..+..+.+.++|+|||||||||+||..|++.|++|++++..+... +.
T Consensus 84 ~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 84 ACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred eeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 34443 689999999999888764432 2222223344899999999999999999999999999976555421 12
Q ss_pred CCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCCCC
Q psy2951 82 YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGV 160 (1466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~~~ 160 (1466)
|..+.+ ....++..+..+.+++.|++|+.+..+-... +++.- .-.||.++++||+. |+.+ .+++.
T Consensus 164 yGIP~~-----kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i-------t~~~L-~~e~Dav~l~~G~~~~~~l-~i~g~ 229 (457)
T COG0493 164 YGIPDF-----KLPKDILDRRLELLERSGVEFKLNVRVGRDI-------TLEEL-LKEYDAVFLATGAGKPRPL-DIPGE 229 (457)
T ss_pred ecCchh-----hccchHHHHHHHHHHHcCeEEEEcceECCcC-------CHHHH-HHhhCEEEEeccccCCCCC-CCCCc
Confidence 222211 2234566677788889999999998764222 11111 23479999999985 4433 34443
Q ss_pred C--cEEEecCHHHHH---hhc------ccCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcc-cccccCHHHH
Q psy2951 161 N--KVFYLRTVEDAN---NIA------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVP-FQESLGKEVG 227 (1466)
Q Consensus 161 ~--~~~~~~~~~~~~---~~~------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~ 227 (1466)
+ ++.......... .+. .....+|+|+|||+|.++++++....+.|. .|+.+++...- -....+....
T Consensus 230 d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~ 309 (457)
T COG0493 230 DAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAA 309 (457)
T ss_pred CCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccch
Confidence 2 332211111111 111 011134899999999999999999889886 68877532211 0001111122
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC-------------------CC--cEEeccEEEEeeccccCccc
Q psy2951 228 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-------------------NG--TTIPADLVIVGIGTVLNTNY 286 (1466)
Q Consensus 228 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-------------------~g--~~i~~D~Vi~a~G~~p~~~~ 286 (1466)
....+...+.|+.........++..+++|++..+.+. .| ..+++|+|+.|+|+.++...
T Consensus 310 ~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~ 389 (457)
T COG0493 310 QLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATD 389 (457)
T ss_pred hhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccc
Confidence 3344556677888888888888887666766544321 12 35789999999999887543
Q ss_pred -c-ccCCceecCCccEEECCCC-CcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhc
Q psy2951 287 -L-DGKGVELNGQKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 287 -l-~~~gl~~~~~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
. ...++..+..|.+.+++.+ +|+.|++||.||+.... ..+..|+.+|+.+|+.+-
T Consensus 390 ~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~-----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 390 GLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA-----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccccCCCCceecccccccccCCCeeeCceeccch-----------hhhhhHHhhchHHHHhhh
Confidence 2 2335778888999999998 89999999999998743 345679999999998775
No 164
>KOG2755|consensus
Probab=99.76 E-value=1.9e-18 Score=175.00 Aligned_cols=263 Identities=21% Similarity=0.338 Sum_probs=178.3
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC--Cccc---hhcc---cCcccccccCHhHhhhCCcEEEEc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR--VKLS---KQLD---IKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~--~~~~---~~~~---~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
+.+|||||.||.+||..|+.+-++.+|+++...+...--. .... ..+. .+..++....+.++ +
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~---------~ 71 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFL---------N 71 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHH---------H
Confidence 4689999999999999999999988999998875432100 0011 1111 01111112222111 1
Q ss_pred eEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHH
Q psy2951 669 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 747 (1466)
Q Consensus 669 ~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~ 747 (1466)
. |... +...+.+.+.+|..+.|++|+++||++|..-.- |.+ .+...++.+.+..++..+.+.|+|.|+|.|-+++
T Consensus 72 ~-v~~~-~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E--~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~ 147 (334)
T KOG2755|consen 72 D-VVTW-DSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVE--GINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAM 147 (334)
T ss_pred h-hhhh-ccccceEEecCCceeeEEEEEEecCCCcceeec--CCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhH
Confidence 2 3344 667788999999999999999999999986532 333 6777778888888888888999999999999999
Q ss_pred HHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcC------------cEEEccc------------------
Q psy2951 748 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG------------VKFVMKA------------------ 797 (1466)
Q Consensus 748 e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~g------------v~~~~~~------------------ 797 (1466)
|++.++. +.+|++....+......+++.+.+.+...|...+ ++...++
T Consensus 148 El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~d 225 (334)
T KOG2755|consen 148 ELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQID 225 (334)
T ss_pred HHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcc
Confidence 9999884 5678888887766666677777766665552111 1011100
Q ss_pred -----------------eEEEEE-ecCCCceEEEECCCC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCC
Q psy2951 798 -----------------NVSSFE-KNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY 857 (1466)
Q Consensus 798 -----------------~v~~i~-~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~ 857 (1466)
++..+. +.+...+.......+ ..+.||.+++|+|..||.+++-...+.+.++|.+.+|+.
T Consensus 226 l~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~ 305 (334)
T KOG2755|consen 226 LQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDA 305 (334)
T ss_pred cccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhh
Confidence 000000 000001111111111 268899999999999999976665677788899999999
Q ss_pred CCCCCCCeEEecccccc
Q psy2951 858 LETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 858 ~~t~~~~iya~GD~~~~ 874 (1466)
|+|+.|++||+||++..
T Consensus 306 m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 306 METSLPDVFAAGDVCTT 322 (334)
T ss_pred ccccccceeeecceecc
Confidence 99999999999999874
No 165
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.76 E-value=2.8e-17 Score=202.88 Aligned_cols=300 Identities=17% Similarity=0.195 Sum_probs=174.1
Q ss_pred eeeccCcchhhhhhhhhhhccc--------------Cccc---c-ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCc
Q psy2951 9 VTIQNDDSVVVQARKDELKNKK--------------RKLP---M-AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGK 70 (1466)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~-~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~ 70 (1466)
|++..++|+.|..++++..+.. ++.+ . +...+.+.++|+|||||||||+||+.|++.|++|+
T Consensus 331 C~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt 410 (1028)
T PRK06567 331 CIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVT 410 (1028)
T ss_pred hcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEE
Confidence 3344588999999999765420 1111 1 11123456899999999999999999999999999
Q ss_pred EEEEcCCCCCCCC-----------------CCc--cch--hcccCc---ccccccChhhhh-cCCeEEEeCceEEEeccc
Q psy2951 71 LYFITDENFLPYD-----------------RVK--LSK--QLDIKA---DSILLRTEEFYK-DNDIHVIKGKKIISDSEL 125 (1466)
Q Consensus 71 i~~~~~~~~~~~~-----------------~~~--~~~--~~~~~~---~~~~~~~~~~~~-~~~v~~~~~~~v~~~~~~ 125 (1466)
+++..+....++. +.+ ... .+++.. .+........++ ..+++++.+..+-.
T Consensus 411 v~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~---- 486 (1028)
T PRK06567 411 AIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKNNLDILRLILERNNNFKYYDGVALDF---- 486 (1028)
T ss_pred EEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHHHHHHHHHHHhcCCceEEECCeEECc----
Confidence 9875432111111 000 000 011110 000111111121 12466666655322
Q ss_pred cccEEEecCCcEEecCEEEEccCC-CCCCCCCCCCCC--cEEEecCHHHHHhhcc----------cCCCCCcEEEECCCH
Q psy2951 126 NEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP----------HITPESNVVVIGSSF 192 (1466)
Q Consensus 126 ~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~vvVvGgG~ 192 (1466)
+++.++-....||.|+||||+ .|+.++ +++.+ +++....+ ...+.. .+..+++|+|||||+
T Consensus 487 ---dit~edl~~~gyDAV~IATGA~kpr~L~-IPGeda~GV~sA~Df--L~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGn 560 (1028)
T PRK06567 487 ---NITKEQAFDLGFDHIAFCIGAGQPKVLD-IENFEAKGVKTASDF--LMTLQSGGAFLKNSNTNMVIRMPIAVIGGGL 560 (1028)
T ss_pred ---cCCHHHHhhcCCCEEEEeCCCCCCCCCC-CCCccCCCeEEHHHH--HHHHhhcccccccccCcccCCCCEEEEcCcH
Confidence 122222224569999999999 577654 45543 34432221 222110 112367999999999
Q ss_pred hHHHHHHHHhh---------------------------------------------------CCCEEEEEeecCcccccc
Q psy2951 193 IGMEAAAFCAS---------------------------------------------------KVKSVTVVGRGAVPFQES 221 (1466)
Q Consensus 193 ~g~e~A~~l~~---------------------------------------------------~g~~Vtlv~~~~~~~~~~ 221 (1466)
+|+|+|..... .|. |++++|....-.+.
T Consensus 561 TAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA 639 (1028)
T PRK06567 561 TSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPA 639 (1028)
T ss_pred HHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCC
Confidence 99999983332 233 99998875433222
Q ss_pred cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC------------------------------CCcEEec
Q psy2951 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD------------------------------NGTTIPA 271 (1466)
Q Consensus 222 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~------------------------------~g~~i~~ 271 (1466)
.. ...+.+.+.+ +.||+++++..+.++..++.+++..+++. ...+++|
T Consensus 640 ~~-~~~eEv~~A~-eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 717 (1028)
T PRK06567 640 YK-LNHEELIYAL-ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKT 717 (1028)
T ss_pred CC-CCHHHHHHHH-HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccC
Confidence 10 0123344444 56999999999999976555555543221 1256899
Q ss_pred cEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHh
Q psy2951 272 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351 (1466)
Q Consensus 272 D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 351 (1466)
|.||+|+|..||+.+... +..+-++.+++| .|++..|+++|+.++.+|
T Consensus 718 ~~vi~A~G~~~~~~~~~~-------------~~s~~~d~~~~f-------------------~Gtvv~A~as~k~~~~~i 765 (1028)
T PRK06567 718 KTVIMAIGIENNTQFDED-------------KYSYFGDCNPKY-------------------SGSVVKALASSKEGYDAI 765 (1028)
T ss_pred CEEEEecccCCccccccc-------------ccccccCCCCcc-------------------ccHHHHHHHHHHhHHHHH
Confidence 999999999999976310 011222334444 245678999999999998
Q ss_pred cC
Q psy2951 352 VE 353 (1466)
Q Consensus 352 ~~ 353 (1466)
..
T Consensus 766 ~~ 767 (1028)
T PRK06567 766 NK 767 (1028)
T ss_pred HH
Confidence 53
No 166
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.75 E-value=1.8e-19 Score=195.57 Aligned_cols=181 Identities=30% Similarity=0.523 Sum_probs=141.5
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCc---ccccc-----cChhhhccCCcEEEcC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKA---DSILL-----RTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~---~~~~~-----~~~~~~~~~~v~~~~~ 1139 (1466)
+|||||||+||++||..|++.+. +|+||++.+..+|....++....... ..... ...+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~--~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA--KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS--EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC--eEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 68999999999999999999888 99999998877776666555543111 10111 1122235679999888
Q ss_pred CeEEEeecCCCCeE----------EecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEE
Q psy2951 1140 KKIISDSELNEKKI----------KLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v----------~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vv 1209 (1466)
+++.++ +...+.+ ...++.++.||+||+|||+.|+.+++| |.+..+..++..++..+...+...++|+
T Consensus 79 ~~v~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (201)
T PF07992_consen 79 AKVVSI-DPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP-GEEVAYFLRGVDDAQRFLELLESPKRVA 156 (201)
T ss_dssp HTEEEE-EESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST-TTTTECBTTSEEHHHHHHTHSSTTSEEE
T ss_pred cccccc-cccccccccCcccceeeccCCceEecCCeeeecCccccceeecC-CCcccccccccccccccccccccccccc
Confidence 999999 9887742 234567899999999999999999999 8753444567778888888877777999
Q ss_pred EEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC
Q psy2951 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289 (1466)
Q Consensus 1210 VvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g 1289 (1466)
|||
T Consensus 157 VvG----------------------------------------------------------------------------- 159 (201)
T PF07992_consen 157 VVG----------------------------------------------------------------------------- 159 (201)
T ss_dssp EES-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 999
Q ss_pred CeeecCEEEEeeccccCcccc-ccCCceeeCCCeEEeCCCccccCCCEEEecccccCC
Q psy2951 1290 TTIPADLVIVGIGTVLNTNYL-DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1290 ~~i~~D~vv~a~G~~p~~~~~-~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p 1346 (1466)
+++| +..+++++.+|++.||++++|+.|+|||+|||+..+
T Consensus 160 -----------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -----------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -----------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -----------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4566 778999988999999999999999999999999865
No 167
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.75 E-value=3.8e-19 Score=193.02 Aligned_cols=181 Identities=29% Similarity=0.523 Sum_probs=134.8
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhccc---C-ccccc----ccCHhHhhhCCcEEEEc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI---K-ADSIL----LRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~~~~~~~~gv~~~~~ 668 (1466)
||+||||||||++||..|++.+.+ ++++++.+..++....+...... . ..... ....+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~--v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK--VLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE--EEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe--EEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 799999999999999999998887 88888876544433333332221 1 11111 03333456789999888
Q ss_pred eEEEEeccccccEE----------EccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEE
Q psy2951 669 KKIISDSELNEKKI----------KLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738 (1466)
Q Consensus 669 ~~v~~i~~~~~~~v----------~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vv 738 (1466)
+++..+ +...+.+ ...++.++.||+||||||+.|+.|+++ |.+.....++..++..+......+++|+
T Consensus 79 ~~v~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (201)
T PF07992_consen 79 AKVVSI-DPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP-GEEVAYFLRGVDDAQRFLELLESPKRVA 156 (201)
T ss_dssp HTEEEE-EESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST-TTTTECBTTSEEHHHHHHTHSSTTSEEE
T ss_pred cccccc-cccccccccCcccceeeccCCceEecCCeeeecCccccceeecC-CCcccccccccccccccccccccccccc
Confidence 889888 6665532 234567899999999999999999999 8753344456667777777766677999
Q ss_pred EECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC
Q psy2951 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g 818 (1466)
|||
T Consensus 157 VvG----------------------------------------------------------------------------- 159 (201)
T PF07992_consen 157 VVG----------------------------------------------------------------------------- 159 (201)
T ss_dssp EES-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 999
Q ss_pred cEEecCEEEEccccccCcccc-ccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccC
Q psy2951 819 TTIPADLVIVGIGTVLNTNYL-DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~~~~-~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~ 875 (1466)
++++ +..+++++++|++.+|+++||+.|+|||+|||+..+
T Consensus 160 -----------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -----------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -----------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -----------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4555 788999999999999999999999999999999764
No 168
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.75 E-value=5.7e-17 Score=178.62 Aligned_cols=356 Identities=20% Similarity=0.314 Sum_probs=222.9
Q ss_pred cCCCCCCCccccceeec--CCEEE--c--CCCCceeecCCCccccCCCCCCCCeEEEEE--EcCCEEEEEcch-------
Q psy2951 982 GTKCSHYGAPLVKGSLG--DGRVR--C--PWHGACFNIATGDIEDFPGMDSLPCYKVTI--QNDDSVVVQARK------- 1046 (1466)
Q Consensus 982 ~~~C~h~g~~l~~g~~~--~~~~~--c--p~h~~~f~~~~g~~~~~p~~~~l~~~~v~~--~~~~~~~~~~~~------- 1046 (1466)
.-.|+..|..+.+..+. +..+. | ..|...|. |..|-+++ ...+..|++...
T Consensus 36 ~~~CSd~gqe~i~~dikeldrvVvaACsPr~he~~Fr--------------ln~y~~E~aniREqcswvH~~dAtekA~d 101 (622)
T COG1148 36 PYMCSDPGQEMIKKDIKELDRVVVAACSPRLHEPTFR--------------LNPYYLEIANIREQCSWVHMDDATEKAKD 101 (622)
T ss_pred eeccCchhHHHHHHHHHHhhheEEEecCCcccCCcee--------------eCHHHhhhhhHhhcceeeccchHHHHHHH
Confidence 34688888776665443 22222 4 25666665 23333322 234444553322
Q ss_pred ---hhhhccccCCCccccCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccC-ccccc
Q psy2951 1047 ---DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK-ADSIL 1122 (1466)
Q Consensus 1047 ---~~l~~~~~~~~~~~~~~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~-~~~~~ 1122 (1466)
.++.++...+++........++++|||||+||++||..|++.|+ ++.|+|+++.++..+..+.+.++.. ..-..
T Consensus 102 llr~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~--~v~LVEKepsiGGrmak~~k~FP~~dcs~C~ 179 (622)
T COG1148 102 LLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGF--KVYLVEKEPSIGGRMAKLNKTFPTNDCSICI 179 (622)
T ss_pred HHHHHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCC--eEEEEecCCcccccHHhhhccCCCcccchhh
Confidence 22233445566666566667899999999999999999999999 9999999999998877777777522 11111
Q ss_pred ccC--hhhhccCCcEEEcCCeEEEeecCC--CCe----------------------------------------------
Q psy2951 1123 LRT--EEFYKDNDIHVIKGKKIISDSELN--EKK---------------------------------------------- 1152 (1466)
Q Consensus 1123 ~~~--~~~~~~~~v~~~~~~~v~~i~d~~--~~~---------------------------------------------- 1152 (1466)
+.+ .+.....+|++++.++|..| +.. +.+
T Consensus 180 LaP~m~~v~~hp~i~l~TyaeV~ev-~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~ 258 (622)
T COG1148 180 LAPKMVEVSNHPNIELITYAEVEEV-SGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPF 258 (622)
T ss_pred ccchhhhhccCCceeeeeeeeeeee-cccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccc
Confidence 222 23344456777777777665 321 111
Q ss_pred -----------------------------EEecCCc---EEecCeEEEecCCCCCcCCCCC--CCC---cEEEecCHHHH
Q psy2951 1153 -----------------------------IKLQDGT---SIDFTKIYLATGSSPRTISQAD--GVN---KVFYLRTVEDA 1195 (1466)
Q Consensus 1153 -----------------------------v~~~~g~---~~~yd~lvlAtG~~~~~~~~~~--g~~---~v~~~~~~~~~ 1195 (1466)
|.++... ++...++|+|||-+++...-.. |.. +|.+. + +.
T Consensus 259 ~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~--l-El 335 (622)
T COG1148 259 PQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN--L-EL 335 (622)
T ss_pred hhhcccccccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhH--H-HH
Confidence 1122111 4667899999998776654221 332 44432 2 23
Q ss_pred Hhhhc-c-------c-----CCCCeEEEEc---CC--------------HHHHHHHHHHhcC--CCeEEEEcCCCcCCcc
Q psy2951 1196 NNIAP-H-------I-----TPESNVVVIG---SS--------------FIGMEAAAFCASK--VKSVTVVGRGAVPFQE 1243 (1466)
Q Consensus 1196 ~~l~~-~-------~-----~~~~~vvVvG---~g--------------~~g~e~a~~l~~~--g~~v~vv~~~~~~~~~ 1243 (1466)
.++.. . + .+.|+|+.|- +- ..++..|...+++ ..+|++.+.+-+
T Consensus 336 Erml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR---- 411 (622)
T COG1148 336 ERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR---- 411 (622)
T ss_pred HHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----
Confidence 33332 1 1 2357887763 21 2345556666665 468999888763
Q ss_pred cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC-----CeeecCEEEEeeccccCcc---ccccCCc
Q psy2951 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-----TTIPADLVIVGIGTVLNTN---YLDGKGV 1315 (1466)
Q Consensus 1244 ~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-----~~i~~D~vv~a~G~~p~~~---~~~~~gl 1315 (1466)
.++....+++.+.-++.||+|+.+. +.+|...++++ ..|...|. .++++|+||+++|+.|... +.+..||
T Consensus 412 afG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL 489 (622)
T COG1148 412 AFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGL 489 (622)
T ss_pred ccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCc
Confidence 4455666777777779999999775 44444244444 34554443 5789999999999999654 5666899
Q ss_pred eeeCCCeEEeC-CCc---cccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1316 ELNGQKAVVVN-EYL---ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1316 ~~~~~G~i~vd-~~~---~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
+.+++||+... ..+ +|+.++||.+| +++.|.-. +.+..||..||...+
T Consensus 490 ~~~~~gF~k~~hPkl~pv~s~~~GIflAG-~aqgPkdI-----------~~siaqa~aAA~kA~ 541 (622)
T COG1148 490 SQDEDGFLKEAHPKLRPVDSNRDGIFLAG-AAQGPKDI-----------ADSIAQAKAAAAKAA 541 (622)
T ss_pred ccCCCCccccCCCCcccccccCCcEEEee-cccCCccH-----------HHHHHHhHHHHHHHH
Confidence 99999988776 334 45689999999 67777654 677788877765544
No 169
>KOG3851|consensus
Probab=99.75 E-value=8.6e-18 Score=174.84 Aligned_cols=297 Identities=15% Similarity=0.185 Sum_probs=195.0
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceE
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
...+..+|+|||||.+|++.|..+.+.-.+..|-++|+...+.|++......-+...-+-..+....+-..+.+.+...
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ek- 113 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEK- 113 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHH-
Confidence 3456799999999999999999999876677899999988777765543322221111111111122223344444433
Q ss_pred EEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC------cEEEecCHHHHHhhccc---CCCCCcEEEE-
Q psy2951 671 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANNIAPH---ITPESNVVVI- 740 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~---~~~~~~vvVv- 740 (1466)
|... ++++.+|.+.+|++|+||++|||+|..-+.-.|+ |+. ++...++....+...+. .++|.-+--.
T Consensus 114 v~~f-~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik-Gl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfP 191 (446)
T KOG3851|consen 114 VKEF-NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK-GLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFP 191 (446)
T ss_pred HHhc-CCCcCeEEccCCcEEeeeeEeeeeeceeccchhc-ChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecC
Confidence 7778 8999999999999999999999999876665565 432 55555565555443322 2333333222
Q ss_pred -------CCChHHHHHH-HHHhccC--CeEEEEeecCccCccccC-HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCc
Q psy2951 741 -------GSSFIGMEAA-AFCASKV--KSVTVVGRGAVPFQESLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809 (1466)
Q Consensus 741 -------G~G~~g~e~A-~~l~~~g--~~V~lv~~~~~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 809 (1466)
|+---.|-++ ..++++| .++.+++....+ ..|+ +...+.+++..++++|++.+.....++..++...
T Consensus 192 ntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~--~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~A 269 (446)
T KOG3851|consen 192 NTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP--TIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKA 269 (446)
T ss_pred CCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc--ceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhh
Confidence 3333334444 3566666 346666655422 2233 5667889999999999999999999998433221
Q ss_pred eEEEECCC-C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeC-CCCCC-CCCCeEEeccccccCCcccCCcee
Q psy2951 810 VTAANLDN-G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLET-NVPGVYAGGDIAYAPLHSFYNKNA 884 (1466)
Q Consensus 810 ~~~v~~~~-g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd-~~~~t-~~~~iya~GD~~~~~~~~~~~~~~ 884 (1466)
+ --.+++ | ++++++++-+....++. +.+..+.+ .|..||+.|| .++|. .+||||++|||...|+..
T Consensus 270 v-Fe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK------ 340 (446)
T KOG3851|consen 270 V-FENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK------ 340 (446)
T ss_pred H-HHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchh------
Confidence 1 112222 4 37899999998887766 45555553 5778999999 56775 699999999999998876
Q ss_pred eeccHHHHHHHHHHHHHHhc
Q psy2951 885 SIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 885 ~~~~~~~A~~~g~~aA~~i~ 904 (1466)
++..+..|..++-.|+.
T Consensus 341 ---TaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 341 ---TAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ---hHHHHHhcCchhhhhHH
Confidence 34445566677777764
No 170
>KOG0399|consensus
Probab=99.72 E-value=2.5e-17 Score=194.73 Aligned_cols=316 Identities=20% Similarity=0.264 Sum_probs=193.2
Q ss_pred CcchhhhhhhhhhhcccC---ccccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--CCCCCCccc
Q psy2951 14 DDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--LPYDRVKLS 88 (1466)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--~~~~~~~~~ 88 (1466)
+.|++|.++.+..++... ++.+-+....+-++|.|||+|||||+||-+|-+.|+.|+|++..++.. +-|..+.+.
T Consensus 1753 e~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmk 1832 (2142)
T KOG0399|consen 1753 EPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMK 1832 (2142)
T ss_pred cCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccc
Confidence 889999999999887754 333333344556899999999999999999999999999998777532 223333321
Q ss_pred hhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCCC-CCcEEEe
Q psy2951 89 KQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADG-VNKVFYL 166 (1466)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~~-~~~~~~~ 166 (1466)
- ...+..+-.+++.+.||+|+.++.+-.. +.+ +.-.-.+|.+|+|+|+. |+.+|.... ..++++.
T Consensus 1833 l-----dk~vv~rrv~ll~~egi~f~tn~eigk~-------vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fa 1899 (2142)
T KOG0399|consen 1833 L-----DKFVVQRRVDLLEQEGIRFVTNTEIGKH-------VSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFA 1899 (2142)
T ss_pred h-----hHHHHHHHHHHHHhhCceEEeecccccc-------ccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHH
Confidence 0 0113445566788899999988765332 222 22234689999999985 787774432 2333321
Q ss_pred cCHHHHH---hhccc------CCCCCcEEEECCCHhHHHHHHHHhhCCCE-EEEEeecCcccc------------cccCH
Q psy2951 167 RTVEDAN---NIAPH------ITPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQ------------ESLGK 224 (1466)
Q Consensus 167 ~~~~~~~---~~~~~------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~------------~~~~~ 224 (1466)
-.+.+.. .++.. -.++|+|+|||||.+|-++...-.+.|.+ |.-++-.+.|.. +.|--
T Consensus 1900 me~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrv 1979 (2142)
T KOG0399|consen 1900 MEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRV 1979 (2142)
T ss_pred HHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEe
Confidence 1100000 01111 13679999999999999988877787754 443433222211 11111
Q ss_pred HHHHHHHHHHHhCCcE--------EE-------cCceEEE--EEecCCCCeEEEEcCC-CcEEeccEEEEeecccc-Ccc
Q psy2951 225 EVGERITKLFESKGVK--------FV-------MKANVSS--FEKNEKNDVTAANLDN-GTTIPADLVIVGIGTVL-NTN 285 (1466)
Q Consensus 225 ~~~~~l~~~l~~~GV~--------i~-------~~~~v~~--i~~~~~~~~~~v~~~~-g~~i~~D~Vi~a~G~~p-~~~ 285 (1466)
++...-.+..-...-+ ++ ++-...+ .++++.++...++..+ .+.++||+||+|.|+.- ...
T Consensus 1980 dygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~ 2059 (2142)
T KOG0399|consen 1980 DYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKS 2059 (2142)
T ss_pred ecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchh
Confidence 1111111111111111 00 0111111 1233334444333333 35789999999999874 455
Q ss_pred ccccCCceecCCccEEE-CCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 286 YLDGKGVELNGQKAVVV-NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 286 ~l~~~gl~~~~~g~i~v-d~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
..++.+++.|+++.|.+ ++.+.|+++++||+|||-....+ +..|+++|+.+|+.+-.
T Consensus 2060 ~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqsl-----------vvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2060 VIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSL-----------VVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred hhhhcCcccCccccccCCCccccccccceeecccccCCceE-----------EEEEehhhhHHHHHHHH
Confidence 66888899998887765 45588899999999999876543 33588899999988653
No 171
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.62 E-value=1.7e-15 Score=140.79 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=67.9
Q ss_pred CCEEEEEe-eCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 495 TPKTLAQS-TTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 495 ~~~~~~~~-~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+..+++++ .+|++||+++.|||++++|+.|.++++.|.||||+|+|+++||++...|+..+|+.|+++++++.+++
T Consensus 23 g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~y~v~v~~g~v~V 99 (101)
T TIGR02377 23 GRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKVVDGAVYV 99 (101)
T ss_pred CeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCCccCCcceEeEEEECCEEEE
Confidence 34455555 58999999999999999999999999999999999999999999999998889999999998887764
No 172
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=99.61 E-value=1.7e-15 Score=134.93 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=71.1
Q ss_pred cceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcccccCc
Q psy2951 1386 FFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIENNAW 1464 (1466)
Q Consensus 1386 ~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1466)
||||+|||.+||++|.+..+++++++|++++..|++||+++|+|+|++++|.+++++.+|++|+++..+++++|+|.+.
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~~~~~~~~rrli~~~~~~~~~~l~d~~~ 79 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNRPRDLRAARRLIAAGARVDPARLADPSV 79 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES-HHHHHHHHHHHHTT-B--HHHHHSTTS
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCCHHHHHHHHHHHHCCCCcCHHHhcCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987653
No 173
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.61 E-value=2.3e-15 Score=138.94 Aligned_cols=75 Identities=56% Similarity=1.137 Sum_probs=68.2
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSV 569 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~ 569 (1466)
+..+++++.+|+++|++|.|||++++|.+|.+.++.|.||||+|+|++++|++...|+..+|+.|+++++++.+|
T Consensus 21 ~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 21 DGKVLLVRQGGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVEDGRVY 95 (95)
T ss_pred CcEEEEEEECCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccCCcceEEEEEECCEEC
Confidence 555666677999999999999999999999999999999999999999999999999988999999999877664
No 174
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.60 E-value=4.7e-15 Score=161.00 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=102.9
Q ss_pred EEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC-----------Cc-------cch--hc-------------cc
Q psy2951 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-----------VK-------LSK--QL-------------DI 645 (1466)
Q Consensus 599 vVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~-----------~~-------~~~--~~-------------~~ 645 (1466)
+|||||||||++|..|.++|.+ .++++|++..++... +. +.. .+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~-~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID-PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCC-cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999985 377788764332100 00 000 00 02
Q ss_pred CcccccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCCC--CCCcCCCCCC-CC-cEEEecC
Q psy2951 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGS--SPRTISQADG-VN-KVFYLRT 720 (1466)
Q Consensus 646 ~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG~--~~~~~~~~~g-~~-~~~~~~~ 720 (1466)
..+++..++..+.++++++++++++|+++.. .+.+.|+++++.++.+|+||+|||. .|+.|+++ | .+ ..++...
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~-g~~~~~~~h~~~ 158 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIP-GSAFRPIIHSAD 158 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-T-TGGCSEEEEGGG
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccc-cccccceEehhh
Confidence 3344555666777888999999999998832 2346788888889999999999994 89999988 7 33 3443332
Q ss_pred HHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCc
Q psy2951 721 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768 (1466)
Q Consensus 721 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 768 (1466)
..+.. ..++|+|+|||+|.+|+++|..|.+.|.+|+++.|++.
T Consensus 159 ~~~~~-----~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 159 WRDPE-----DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -STTG-----GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred cCChh-----hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 22221 23589999999999999999999999999999999873
No 175
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.58 E-value=9.1e-15 Score=137.37 Aligned_cols=77 Identities=32% Similarity=0.565 Sum_probs=69.3
Q ss_pred CEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEE
Q psy2951 496 PKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 496 ~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~ 572 (1466)
..+++++.+|++||++|.|||++++|+.|.+++ +.|+||||+|+|+++||++...|+..+|+.|+++++++.+++-.
T Consensus 24 ~~i~v~~~~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~y~v~v~~g~v~v~~ 101 (106)
T PRK09965 24 PVIALFNVGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHVEGGDIFIDL 101 (106)
T ss_pred CeEEEEEECCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCCCCCCcceEeEEEECCEEEEEc
Confidence 556677789999999999999999999999988 79999999999999999999888878999999999888777643
No 176
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.57 E-value=8.1e-14 Score=161.81 Aligned_cols=267 Identities=12% Similarity=0.212 Sum_probs=152.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHH-HcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLR-QNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~-~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
...++|+|||||||||+||..|. +.|++ |+++|+.+.+. .......... .....+...+...+...+++++.+.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~--VtlfEk~p~pg-GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~ 113 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVK--VDIFEKLPNPY-GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVH 113 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCe--EEEEecCCCCc-cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeE
Confidence 35689999999999999999765 66877 77777776543 3322221111 12223333444445567888876554
Q ss_pred EEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCC------------------CCC----cEEEecCHHHHH---
Q psy2951 671 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD------------------GVN----KVFYLRTVEDAN--- 725 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~------------------g~~----~~~~~~~~~~~~--- 725 (1466)
+.. .++.++- .-.||+||+|||+.+..++++. |.- .+.++....+..
T Consensus 114 VG~-------Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~ 185 (506)
T PTZ00188 114 VGV-------DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCK 185 (506)
T ss_pred ecC-------ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccc
Confidence 321 1222222 2379999999998876555210 211 122222221111
Q ss_pred hhccc---CCCCCcEEEECCChHHHHHHHHHh--------------------cc-CCeEEEEeecCcc------------
Q psy2951 726 NIAPH---ITPESNVVVIGSSFIGMEAAAFCA--------------------SK-VKSVTVVGRGAVP------------ 769 (1466)
Q Consensus 726 ~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~-g~~V~lv~~~~~~------------ 769 (1466)
....+ +...++++|||.|++|+++|..|. +. -.+|+|+.|+...
T Consensus 186 ~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL 265 (506)
T PTZ00188 186 AVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELREL 265 (506)
T ss_pred cccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHH
Confidence 11111 124689999999999999998753 22 2468888877420
Q ss_pred --Cc--------ccc------CH--H-----------HHHHHHHHHH----------hcCcEEEccceEEEEEecCCCce
Q psy2951 770 --FQ--------ESL------GK--E-----------VGERITKLFE----------SKGVKFVMKANVSSFEKNEKNDV 810 (1466)
Q Consensus 770 --~~--------~~~------~~--~-----------~~~~~~~~l~----------~~gv~~~~~~~v~~i~~~~~~~~ 810 (1466)
+. ..+ +. + ..+.+.+... .+-+.+++...+.+|.. .++++
T Consensus 266 ~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~-~~~~v 344 (506)
T PTZ00188 266 ISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRP-IDGAM 344 (506)
T ss_pred hcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEEC-CCCcE
Confidence 00 000 00 0 1112222221 13467778888888873 23566
Q ss_pred EEEECC-----------CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCC--CCCCCeEEeccccccC
Q psy2951 811 TAANLD-----------NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE--TNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 811 ~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~--t~~~~iya~GD~~~~~ 875 (1466)
..+++. .| ++++||+|+-|+|++... + .|+++|.. +... ..+ ...|++|++|.+-..|
T Consensus 345 ~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p-~---~g~pFd~~--~~n~-~grv~~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 345 KNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN-F---AENLYNQS--VQMF-KEDIGQHKFAIFKAGWFDKGP 417 (506)
T ss_pred eEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC-C---CCCCcccc--CCCC-CCcccCCCCCcEEeeecCcCC
Confidence 666554 23 268999999999998652 2 13555522 2221 112 1379999999998877
Q ss_pred Ccc
Q psy2951 876 LHS 878 (1466)
Q Consensus 876 ~~~ 878 (1466)
.-.
T Consensus 418 ~Gv 420 (506)
T PTZ00188 418 KGN 420 (506)
T ss_pred Cce
Confidence 644
No 177
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.56 E-value=1.3e-14 Score=135.29 Aligned_cols=76 Identities=28% Similarity=0.557 Sum_probs=69.0
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+..+++++.+|+++|++|.|||+|++|..|...++.|.||||||+|++++|++..+|+..+|+.|+++++++.+++
T Consensus 22 g~~~~v~r~~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 22 GRPIAVYRVDGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKVEDGDVYV 97 (98)
T ss_pred CeEEEEEEECCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCCCCCcceEeEEEECCEEEE
Confidence 4566667778899999999999999999999888899999999999999999999999889999999998887764
No 178
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.56 E-value=1.5e-14 Score=157.13 Aligned_cols=161 Identities=22% Similarity=0.353 Sum_probs=100.0
Q ss_pred EEECCchHHHHHHHHHHhcCCCCc-EEEEcCCCCCC--------CCCC---C-Cchhhc---------------------
Q psy2951 1070 IVVGGGPSGATCVETLRQNGFTGK-LYFITDENFLP--------YDRV---K-LSKQLD--------------------- 1115 (1466)
Q Consensus 1070 vIVG~G~aGl~aA~~L~~~g~~~~-i~li~~~~~~~--------~~~~---~-l~~~~~--------------------- 1115 (1466)
+|||||+|||++|..|++.|. + ++|||+++.++ +.+. . ....+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~--~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGI--DPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCC--CcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 799999999999999999999 6 99999985433 1000 0 000000
Q ss_pred cCcccccccChhhhccCCcEEEcCCeEEEeecCC--CCeEEecCCcEEecCeEEEecCC--CCCcCCCCCC-CC-cEEEe
Q psy2951 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGS--SPRTISQADG-VN-KVFYL 1189 (1466)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lvlAtG~--~~~~~~~~~g-~~-~v~~~ 1189 (1466)
.+.+++......+.++++++++++++|+++ ... ...|+++++.++.+|+||+|||. .|+.|+++ | .+ ..++.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v-~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~-g~~~~~~~h~ 156 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESV-RRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIP-GSAFRPIIHS 156 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEE-EEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-T-TGGCSEEEEG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEE-EEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccc-cccccceEeh
Confidence 001111111123566678899999999999 543 35788888889999999999996 88888888 7 33 34444
Q ss_pred cCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCc
Q psy2951 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 1239 (1466)
Q Consensus 1190 ~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~ 1239 (1466)
..+.+...+ .+++|+|||+|.+|++++..|.+.|.+|+++.|.+.
T Consensus 157 ~~~~~~~~~-----~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 157 ADWRDPEDF-----KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GG-STTGGC-----TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhcCChhhc-----CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 333333222 379999999999999999999999999999999873
No 179
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.55 E-value=1.3e-14 Score=134.20 Aligned_cols=78 Identities=29% Similarity=0.595 Sum_probs=70.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCC-EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~-~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.++..+++++.+|++||++|.|||.++||+.|.+++. .|.||+|+|+|+++||++++.|+...|+.|+++++++.+++
T Consensus 25 ~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~~p~~~~l~~y~vrve~g~v~v 103 (106)
T COG2146 25 GGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRVEGGRVFV 103 (106)
T ss_pred cCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceecCCCCCceeEEeEEEECCEEEE
Confidence 4458899999999999999999999999999999986 59999999999999999999998644899999998776665
No 180
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.55 E-value=1.4e-14 Score=134.85 Aligned_cols=78 Identities=19% Similarity=0.470 Sum_probs=66.7
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++..++++++.+|+++|++|.|||++++|++|.++++.|.||||||+|++++|++. .|+..+|+.|+++++++.++++
T Consensus 21 ~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~-~p~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 21 GGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQ-GPDEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred CCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCC-CCCCCccceEeEEEECCEEEEC
Confidence 33445555455699999999999999999999999999999999999999999985 5666789999999998888764
No 181
>KOG1800|consensus
Probab=99.55 E-value=4.4e-14 Score=151.74 Aligned_cols=288 Identities=20% Similarity=0.284 Sum_probs=165.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc-CcccccccChhhhccCCcEEEcCCeE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI-KADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
.+.++|.|||+||||+.+|..|.++.....|+|+|+.|. ||.....+..... ......-.....++.....|..+.+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 445699999999999999999988755569999999984 3332222221110 00001111223344456666666544
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHH-------HhhhcccCCCCeEEEEc
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDA-------NNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~-------~~l~~~~~~~~~vvVvG 1212 (1466)
-.- +.+.+ -+-.||++|||.|+ .++.+.+| |.+ +|+..|..-.. +++--.+. +.+|+|||
T Consensus 97 G~d-------vsl~e-L~~~ydavvLaYGa~~dR~L~IP-Ge~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG 166 (468)
T KOG1800|consen 97 GRD-------VSLKE-LTDNYDAVVLAYGADGDRRLDIP-GEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVG 166 (468)
T ss_pred ccc-------ccHHH-HhhcccEEEEEecCCCCcccCCC-CcccccceehhhhhhhccCCCcccccCcccc-cceEEEEc
Confidence 111 33322 24569999999998 78999999 876 77765533222 11222233 78999999
Q ss_pred CCHHHHHHHHHHhcC----------------------CCeEEEEcCCCcC--------------Cc-------c-cc---
Q psy2951 1213 SSFIGMEAAAFCASK----------------------VKSVTVVGRGAVP--------------FQ-------E-SL--- 1245 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~----------------------g~~v~vv~~~~~~--------------~~-------~-~~--- 1245 (1466)
.|++++++|.-|... -.+|+++.|..-. ++ . .+
T Consensus 167 ~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~ 246 (468)
T KOG1800|consen 167 NGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGK 246 (468)
T ss_pred cCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccce
Confidence 999999999865332 1258888876311 00 0 00
Q ss_pred ------------cHHHHHHHHHHHHhCC---------cE---EEcCceEEEEEecCCCcEE-------------EEEcCC
Q psy2951 1246 ------------GKEVGERITKLFESKG---------VK---FVMKANVSSFEKNEKNDVT-------------AANLDN 1288 (1466)
Q Consensus 1246 ------------~~~~~~~l~~~~~~~g---------v~---~~~~~~v~~i~~~~~g~~~-------------~v~l~~ 1288 (1466)
-.++.+.+.+.++++- .+ +++......|.+++++ +. .+...+
T Consensus 247 ~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~~~~~tg~ 325 (468)
T KOG1800|consen 247 WMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTILEGTQAVPTGA 325 (468)
T ss_pred eCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeeeehhhcccccCc
Confidence 0233444444444311 00 0011111122211111 11 112223
Q ss_pred CCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCcccc----CCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1289 GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN----VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1289 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~----~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
-++++|++++.++|+.... + ..|+..|...+++-+..++.. .|++|+.|-|.+.|.... ..++
T Consensus 326 ~e~~p~~l~i~sIGYks~p-v--~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvI----------attm 392 (468)
T KOG1800|consen 326 FETLPCGLLIRSIGYKSVP-V--DSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVI----------ATTM 392 (468)
T ss_pred eEeeccceeEeeeeecccc-c--CCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCccee----------eehh
Confidence 3679999999999986541 1 125666655445555555543 599999999998876431 4577
Q ss_pred HHHHHHHHHhcC
Q psy2951 1365 YHGRIAALNMVE 1376 (1466)
Q Consensus 1365 ~qa~~aa~~i~g 1376 (1466)
++|..+|..|+.
T Consensus 393 ~dAf~v~d~I~q 404 (468)
T KOG1800|consen 393 QDAFEVADTIVQ 404 (468)
T ss_pred hhHHHHHHHHHH
Confidence 777777777764
No 182
>KOG1800|consensus
Probab=99.55 E-value=3.9e-14 Score=152.17 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=168.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+..++|.|||+||||+.+|..|.++-....|.++|+.+. ||...++..... .....+...+.+.++.....+..|.+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 445699999999999999999999755567888888754 554444433332 222333444555566667888877755
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC--cEEEecCHH-------HHHhhcccCCCCCcEEEEC
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVE-------DANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~-------~~~~~~~~~~~~~~vvVvG 741 (1466)
... +++. .-+-.||+||||+|+. ++.++|| |.+ +++..+... +..++.-.+. +.+|+|||
T Consensus 97 G~d-------vsl~-eL~~~ydavvLaYGa~~dR~L~IP-Ge~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG 166 (468)
T KOG1800|consen 97 GRD-------VSLK-ELTDNYDAVVLAYGADGDRRLDIP-GEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVG 166 (468)
T ss_pred ccc-------ccHH-HHhhcccEEEEEecCCCCcccCCC-CcccccceehhhhhhhccCCCcccccCcccc-cceEEEEc
Confidence 221 2221 2245799999999974 8889999 875 555433322 2222222223 88999999
Q ss_pred CChHHHHHHHHHhcc----------------------CCeEEEEeecCccCcc---------------------------
Q psy2951 742 SSFIGMEAAAFCASK----------------------VKSVTVVGRGAVPFQE--------------------------- 772 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~----------------------g~~V~lv~~~~~~~~~--------------------------- 772 (1466)
.|++++++|..|... -++|+|+.|+...-..
T Consensus 167 ~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~ 246 (468)
T KOG1800|consen 167 NGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGK 246 (468)
T ss_pred cCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccce
Confidence 999999999876421 2578898877531000
Q ss_pred ----------ccCHHHHHHHHHHHHhc---------Cc---EEEccceEEEEEecCCC----ceE--------EEECCCC
Q psy2951 773 ----------SLGKEVGERITKLFESK---------GV---KFVMKANVSSFEKNEKN----DVT--------AANLDNG 818 (1466)
Q Consensus 773 ----------~~~~~~~~~~~~~l~~~---------gv---~~~~~~~v~~i~~~~~~----~~~--------~v~~~~g 818 (1466)
.--+++.+.+.+.+.++ +. .+.+...+.+|.++.++ .+. .+.+.+-
T Consensus 247 ~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~ 326 (468)
T KOG1800|consen 247 WMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAF 326 (468)
T ss_pred eCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCce
Confidence 00022333333333331 11 11112223333322111 000 1122233
Q ss_pred cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCC----CCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET----NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t----~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
++++|++++.++|++... +- .|+.+|....+..|...+. -.|++|++|-|...|.-. ...+++
T Consensus 327 e~~p~~l~i~sIGYks~p-v~--~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~Gv----------Iattm~ 393 (468)
T KOG1800|consen 327 ETLPCGLLIRSIGYKSVP-VD--SGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGV----------IATTMQ 393 (468)
T ss_pred EeeccceeEeeeeecccc-cC--CCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcce----------eeehhh
Confidence 579999999999997542 11 1455554433333333322 259999999998877533 135677
Q ss_pred HHHHHHHHhcc
Q psy2951 895 HGRIAALNMVE 905 (1466)
Q Consensus 895 ~g~~aA~~i~~ 905 (1466)
++..+|..|..
T Consensus 394 dAf~v~d~I~q 404 (468)
T KOG1800|consen 394 DAFEVADTIVQ 404 (468)
T ss_pred hHHHHHHHHHH
Confidence 77777777753
No 183
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.53 E-value=3.3e-14 Score=132.85 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCEEEEEe--eCCeEEEEeCCCCCCCcc-cCCceecC--C--EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 495 TPKTLAQS--TTSNIYAVGTKCSHYGAP-LVKGSLGD--G--RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 495 ~~~~~~~~--~~g~~~a~~~~C~H~~~~-l~~g~~~~--~--~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++.+++++ .+|++||++|.|||++++ |+.|.+.+ + .|.||||+|+|+++||++...|+ .+|++|+++++++.
T Consensus 25 g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~typV~ve~g~ 103 (108)
T PRK09511 25 DEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYDARVKDGV 103 (108)
T ss_pred CEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCcccCCCCC-ccEeeEeEEEECCE
Confidence 44555555 589999999999999986 99999842 2 49999999999999999998776 48999999998888
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+++
T Consensus 104 V~v 106 (108)
T PRK09511 104 VQL 106 (108)
T ss_pred EEE
Confidence 765
No 184
>KOG1399|consensus
Probab=99.52 E-value=8e-14 Score=163.09 Aligned_cols=230 Identities=16% Similarity=0.236 Sum_probs=143.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC----------------CCc--------------cchh-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----------------RVK--------------LSKQ- 642 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~----------------~~~--------------~~~~- 642 (1466)
.+++|+|||||||||.+|+.|.+.|++ ++++|+.+.+++. ... ....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~--v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE--VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC--ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 478999999999999999999999999 5555555433311 100 0000
Q ss_pred cc--cCcccccccCHhHhhhCCc--EEEEceEEEEeccc--cccEEEccCC----CEEecCEEEEcCCCC--CCcCCCCC
Q psy2951 643 LD--IKADSILLRTEEFYKDNDI--HVIKGKKIISDSEL--NEKKIKLQDG----TSIDFTKIYLATGSS--PRTISQAD 710 (1466)
Q Consensus 643 ~~--~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~--~~~~v~~~~~----~~~~~d~lviAtG~~--~~~~~~~~ 710 (1466)
.. .+..++..++..+.+..++ .+.++++|..+... ..+.|.+.+. .+.-||.|++|||-. |+.|.++
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~- 161 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP- 161 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC-
Confidence 00 2333566677777777776 47778866666333 3566766544 477899999999954 8888888
Q ss_pred CCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc
Q psy2951 711 GVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789 (1466)
Q Consensus 711 g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 789 (1466)
|.. ..+...-++....-......+|+|+|||+|++|+|++..+++..++|++..+ ..... ... ... .-.
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~----~~~----~~~-~~~ 231 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVH----VEP----PEI-LGE 231 (448)
T ss_pred CCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccc----ccc----cce-eec
Confidence 632 1111111111111122234589999999999999999999999999988865 10000 000 000 011
Q ss_pred CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC
Q psy2951 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 843 (1466)
++..+. .|..++ +++ .+.++++....+|.+|+|||+.-...+++..+
T Consensus 232 ~~~~~~--~i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 232 NLWQVP--SIKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ceEEcc--cccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 222221 144444 221 35566777888999999999998888777654
No 185
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.51 E-value=4.3e-14 Score=131.68 Aligned_cols=73 Identities=34% Similarity=0.669 Sum_probs=65.4
Q ss_pred CCCEEEEEeeCCeEEEEeCCCCCCCcccCCc--eecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcC
Q psy2951 494 STPKTLAQSTTSNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g--~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~ 566 (1466)
++..+++++.+|+++|++|.|||++++|.+| ..+++.|+||||||+|+++||++..+|+..+++.|+++++++
T Consensus 23 ~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 23 GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVGGPAPRPLPLYPVKVEGD 97 (97)
T ss_dssp TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEESTTCSBSTEEEEEEETT
T ss_pred CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEecCCCCCCcCCCCeEEeCC
Confidence 5778888889999999999999999999999 345679999999999999999999999999999999998754
No 186
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.2e-13 Score=165.40 Aligned_cols=171 Identities=17% Similarity=0.236 Sum_probs=115.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-------CCccc--h--------hc----c-cCccc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RVKLS--K--------QL----D-IKADS 649 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-------~~~~~--~--------~~----~-~~~~~ 649 (1466)
.....+|+|||||++||++|+.|+++|..- ++++|++...+.. ...+. . .+ . .....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 345799999999999999999999999874 6677776432211 10000 0 00 0 11122
Q ss_pred ccccCHhHhhhCCcE--EEEceEEEEe---ccccccEEEccCCCE--EecCEEEEcCC--CCCCcCCCCCCCC----cEE
Q psy2951 650 ILLRTEEFYKDNDIH--VIKGKKIISD---SELNEKKIKLQDGTS--IDFTKIYLATG--SSPRTISQADGVN----KVF 716 (1466)
Q Consensus 650 ~~~~~~~~~~~~gv~--~~~~~~v~~i---~~~~~~~v~~~~~~~--~~~d~lviAtG--~~~~~~~~~~g~~----~~~ 716 (1466)
+..+...+++++++. +..++.|..+ .+...++|+++++.+ +.+|+||+||| +.|+.|+++ |.+ .++
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~ 162 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRIL 162 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEE
Confidence 444555666666544 3334444333 122356788877765 45999999999 789999999 877 233
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 769 (1466)
+.....+. ...+||+|+|||+|++|++++..|.+.|.+||++.|++..
T Consensus 163 HS~~~~~~-----~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 163 HSADWPNP-----EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred chhcCCCc-----cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 22222222 2235999999999999999999999999999999999854
No 187
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.49 E-value=8.2e-14 Score=132.19 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=68.6
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++...+++++.+|+++|++|.|||++++|..|.++++.|.||||||+|++++|++.. |...+|+.|+++++++.+++-
T Consensus 21 ~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~~~~L~~~~v~v~~g~v~v~ 98 (108)
T cd03474 21 DGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PRDCRLARYPVKVEGGDILVD 98 (108)
T ss_pred CCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CCCCccceEeEEEECCEEEEe
Confidence 346677888889999999999999999999999988899999999999999999875 555689999999987777653
No 188
>KOG1399|consensus
Probab=99.49 E-value=3.3e-13 Score=157.91 Aligned_cols=231 Identities=18% Similarity=0.264 Sum_probs=146.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCC-------------C-CCCCc--cchhc---------------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL-------------P-YDRVK--LSKQL--------------- 91 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~-------------~-~~~~~--~~~~~--------------- 91 (1466)
.++|+|||||||||.+|+.|.+.|++++++|.++.-.. + |.+.. +.++.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 57899999999999999999999999999987664211 1 21111 11111
Q ss_pred ccCcccccccChhhhhcCCe--EEEeCceEEEeccc--cccEEEecCC----cEEecCEEEEccCCC--CCCCCCCCCCC
Q psy2951 92 DIKADSILLRTEEFYKDNDI--HVIKGKKIISDSEL--NEKKIKLQDG----TSIDFTKIYLATGSS--PRTISQADGVN 161 (1466)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~~~~~--~~~~v~~~~~----~~~~~d~lviAtG~~--~~~~~~~~~~~ 161 (1466)
-.+..++..++..+.+++++ .+..++.+...... +.+.|...+. +...||.|++|||-. |+ +|.+++..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~-~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPR-IPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCC-CCcCCCCc
Confidence 11233566677778888875 46666654443333 4677777554 467899999999976 44 34444421
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 162 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
..+..+.++...........+|+|+|||.|++|+|++..+++..++|++..+ ........ + .. ...++.
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~-~-------~~-~~~~~~ 234 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEP-P-------EI-LGENLW 234 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccc-c-------ce-eecceE
Confidence 1233333344444455667789999999999999999999999988888754 10000000 0 00 011222
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccCC
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 291 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g 291 (1466)
.+. .|..+++++ .+.+.++....+|.||+|||+.-...+++..+
T Consensus 235 ~~~--~i~~~~e~~-----~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 235 QVP--SIKSFTEDG-----SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred Ecc--ccccccCcc-----eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 221 155554432 24456677888999999999998888876543
No 189
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.49 E-value=8.5e-14 Score=135.04 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=69.7
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC----CCCeEEEEEEcCeE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----SLPCYKVTIQNDDS 568 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----~l~~~~v~i~~~~~ 568 (1466)
.+..++++++.+|+++|++|.|||+|++|+.|.++++.|+||||||+|+ .+|++...|... +++.|+++++++.+
T Consensus 38 ~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V 116 (129)
T cd04337 38 FGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPCMEQDGMI 116 (129)
T ss_pred CCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEEC-CCCCEEeCCcCCCccCCcceEeEEEECCEE
Confidence 4466666666789999999999999999999999988999999999999 799999988653 79999999988888
Q ss_pred EEEEc
Q psy2951 569 VVVQA 573 (1466)
Q Consensus 569 ~~~~~ 573 (1466)
|+...
T Consensus 117 ~V~~~ 121 (129)
T cd04337 117 WVWPG 121 (129)
T ss_pred EEEcC
Confidence 77553
No 190
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.48 E-value=8.7e-14 Score=132.45 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=67.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCC------CCCCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG------MDSLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~------~~~l~~~~v~i~~~ 566 (1466)
.+..++++++.+|+++|++|.|||+|++|+.|.++++.|+||||||+|+. +|++...|+ ..+++.|+++++++
T Consensus 22 ~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~-~G~~~~~p~~~~~p~~~~l~~ypv~~~~g 100 (115)
T cd03531 22 FGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGG-DGRCKAIPYARRVPPLARTRAWPTLERNG 100 (115)
T ss_pred CCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECC-CCCEEECCcccCCCcccccceEeEEEECC
Confidence 34566666566999999999999999999999999999999999999999 899998764 34688999999887
Q ss_pred eEEEEE
Q psy2951 567 DSVVVQ 572 (1466)
Q Consensus 567 ~~~~~~ 572 (1466)
.+|+..
T Consensus 101 ~v~v~~ 106 (115)
T cd03531 101 QLFVWH 106 (115)
T ss_pred EEEEEC
Confidence 776643
No 191
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.9e-13 Score=163.73 Aligned_cols=167 Identities=17% Similarity=0.274 Sum_probs=114.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-------CC--CCCCchhhc----cCc---ccc------
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YD--RVKLSKQLD----IKA---DSI------ 1121 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~-------~~--~~~l~~~~~----~~~---~~~------ 1121 (1466)
....+|+|||||++|+++|.+|+++|.+. ++++|++...+ |+ +...++... .+. ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence 34678999999999999999999999943 99999996433 11 111111111 000 011
Q ss_pred cccChhhhccCCc--EEEcCCeEEEeecCC----CCeEEecCCcEE--ecCeEEEecCC--CCCcCCCCCCCC----cEE
Q psy2951 1122 LLRTEEFYKDNDI--HVIKGKKIISDSELN----EKKIKLQDGTSI--DFTKIYLATGS--SPRTISQADGVN----KVF 1187 (1466)
Q Consensus 1122 ~~~~~~~~~~~~v--~~~~~~~v~~i~d~~----~~~v~~~~g~~~--~yd~lvlAtG~--~~~~~~~~~g~~----~v~ 1187 (1466)
.....++++++++ .+..++.|..+ +.. ..+|+++++... .+|+||+|||. .|+.|+++ |.+ .++
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~-~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~ 162 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVA-DWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRIL 162 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEE-EecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEE
Confidence 1111234444433 23344444444 332 346888877664 49999999996 89999999 887 344
Q ss_pred EecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1188 ~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
+..++.+...++ +|+|+|||+|.+|++++..|.+.|.+||++.|.+
T Consensus 163 HS~~~~~~~~~~-----GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 163 HSADWPNPEDLR-----GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred chhcCCCccccC-----CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 444455554454 9999999999999999999999999999999886
No 192
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.48 E-value=1.3e-13 Score=134.96 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=68.9
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC---------CCCCeEEEE
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM---------DSLPCYKVT 562 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~---------~~l~~~~v~ 562 (1466)
..+..++++++.+|+++|++|.|||+|++|+.|.+.++.|+||||+|+|+. +|++...|.. .+|+.|+++
T Consensus 37 v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~-~G~~~~~P~~~~~~~~~~~~~l~~y~v~ 115 (134)
T cd04338 37 VYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGG-EGKCVKIPQLPADAKIPKNACVKSYEVR 115 (134)
T ss_pred ECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECC-CCCEEECCCCCccCCCCcccCcceEeEE
Confidence 344555555557899999999999999999999999999999999999996 8999877643 468999999
Q ss_pred EEcCeEEEEEcc
Q psy2951 563 IQNDDSVVVQAR 574 (1466)
Q Consensus 563 i~~~~~~~~~~~ 574 (1466)
++++.+|+....
T Consensus 116 ~~~G~V~V~~~~ 127 (134)
T cd04338 116 DSQGVVWMWMSE 127 (134)
T ss_pred EECCEEEEEcCC
Confidence 998888876543
No 193
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.47 E-value=3.6e-13 Score=155.12 Aligned_cols=233 Identities=20% Similarity=0.196 Sum_probs=129.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc------------------------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD------------------------------ 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------ 644 (1466)
.+|+++||.||++|+.|..|...+ ..++..+|+.+.+.++...+.....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 368999999999999999999988 4458888877544332211110000
Q ss_pred -----------cCcccccccCHhHhhhCCcEEEEceEEEEeccccc------cEEEcc----CCCEEecCEEEEcCCCCC
Q psy2951 645 -----------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE------KKIKLQ----DGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 -----------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~------~~v~~~----~~~~~~~d~lviAtG~~~ 703 (1466)
....++..++.-..++..-.+.++++|+.| +... ..|.+. ++..+.++.||||||..|
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I-~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSI-EPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEE-EEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEE-EEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 011111112212222345448889999998 3322 466663 356899999999999999
Q ss_pred CcCCCCCCC---CcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCC--eEEEEeecCccCc-------
Q psy2951 704 RTISQADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQ------- 771 (1466)
Q Consensus 704 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~~~------- 771 (1466)
..|+..... ..+++......... ....+++|+|||||.+|.|++..|.+.+. +|+++.|++....
T Consensus 160 ~iP~~~~~~~~~~~v~Hss~~~~~~~---~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ 236 (341)
T PF13434_consen 160 RIPEWFQDLPGSPRVFHSSEYLSRID---QSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV 236 (341)
T ss_dssp ---GGGGGGTT-TTEEEGGGHHHHHT--------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH
T ss_pred CCCcchhhcCCCCCEEEehHhhhccc---cccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch
Confidence 988765332 35666554443321 14458999999999999999999998864 8999999875221
Q ss_pred -cccCHH-------------------------------HHHHHHHHH------HhcCcEEEccceEEEEEecCCCceEEE
Q psy2951 772 -ESLGKE-------------------------------VGERITKLF------ESKGVKFVMKANVSSFEKNEKNDVTAA 813 (1466)
Q Consensus 772 -~~~~~~-------------------------------~~~~~~~~l------~~~gv~~~~~~~v~~i~~~~~~~~~~v 813 (1466)
..++++ +.+.+.+.+ .+..+.++.+++|+.++..+++.+ .+
T Consensus 237 ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l 315 (341)
T PF13434_consen 237 NEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RL 315 (341)
T ss_dssp HGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EE
T ss_pred hhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EE
Confidence 122222 222222222 233578999999999986654433 34
Q ss_pred ECCC-----CcEEecCEEEEccccc
Q psy2951 814 NLDN-----GTTIPADLVIVGIGTV 833 (1466)
Q Consensus 814 ~~~~-----g~~i~~D~vi~a~G~~ 833 (1466)
.+.+ ..++++|.||+|||++
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 3332 2478999999999985
No 194
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.47 E-value=1.7e-13 Score=128.26 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=62.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcc-cCCceec----CCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~-l~~g~~~----~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++..+++++..+|++||++|.|||++++ |+.|.+. +..|+||||+|+|+++||+|...|+. +|+.|+++++++.
T Consensus 21 ~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~~~~g~ 99 (103)
T cd03529 21 GDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRCLEDEDV-SVATFPVRVEDGE 99 (103)
T ss_pred CCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCccCCCCc-cEeeEeEEEECCE
Confidence 3344444444445999999999999997 7888874 24899999999999999999988865 7999999998777
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+++
T Consensus 100 v~v 102 (103)
T cd03529 100 VYV 102 (103)
T ss_pred EEE
Confidence 764
No 195
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.46 E-value=2.8e-13 Score=156.04 Aligned_cols=235 Identities=20% Similarity=0.194 Sum_probs=123.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccch----------hc---------------------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK----------QL--------------------- 91 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~----------~~--------------------- 91 (1466)
.+|+++||.||++|+.|..|.+.+ ...+..+++.+...+....+.. .+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 479999999999999999999887 3444445544322111111000 00
Q ss_pred ----------ccCcccccccChhhhhcCCeEEEeCceEEEecccc-----ccEEEec----CCcEEecCEEEEccCCCCC
Q psy2951 92 ----------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-----EKKIKLQ----DGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 92 ----------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-----~~~v~~~----~~~~~~~d~lviAtG~~~~ 152 (1466)
.....++..++....++..-.+..+..|....... .++|.+. ++..+.++.||+|||..|.
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence 00111222233333444554477777766532222 2567763 3468999999999999888
Q ss_pred CCCCCCCC---CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCC--EEEEEeecCcccc--------
Q psy2951 153 TISQADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQ-------- 219 (1466)
Q Consensus 153 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-------- 219 (1466)
.|...... +.++. +.+....... ..+.++|+|||||.+|.|++..|.+.+. +|+++.|++...+
T Consensus 161 iP~~~~~~~~~~~v~H--ss~~~~~~~~-~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~n 237 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFH--SSEYLSRIDQ-SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVN 237 (341)
T ss_dssp --GGGGGGTT-TTEEE--GGGHHHHHT------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHH
T ss_pred CCcchhhcCCCCCEEE--ehHhhhcccc-ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchh
Confidence 66544432 44554 3333333322 4567899999999999999999988764 8999999754332
Q ss_pred cccCHHHH-------------------------------HHHHH-----HH-HhCCcEEEcCceEEEEEecCCCCeEE-E
Q psy2951 220 ESLGKEVG-------------------------------ERITK-----LF-ESKGVKFVMKANVSSFEKNEKNDVTA-A 261 (1466)
Q Consensus 220 ~~~~~~~~-------------------------------~~l~~-----~l-~~~GV~i~~~~~v~~i~~~~~~~~~~-v 261 (1466)
..++|++. +.+.+ .+ .+..++++.++.|++++..+++.+.. +
T Consensus 238 e~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~ 317 (341)
T PF13434_consen 238 EIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTL 317 (341)
T ss_dssp GGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEE
T ss_pred hhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEE
Confidence 12233322 22211 11 23357899999999998876433331 1
Q ss_pred -EcCCC--cEEeccEEEEeeccc
Q psy2951 262 -NLDNG--TTIPADLVIVGIGTV 281 (1466)
Q Consensus 262 -~~~~g--~~i~~D~Vi~a~G~~ 281 (1466)
....+ .++++|.||+|||++
T Consensus 318 ~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 318 RHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EETTT--EEEEEESEEEE---EE
T ss_pred EECCCCCeEEEecCEEEEcCCcc
Confidence 22222 478999999999985
No 196
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.46 E-value=1.2e-13 Score=127.66 Aligned_cols=76 Identities=30% Similarity=0.587 Sum_probs=66.6
Q ss_pred CCCEEEEEee-CCeEEEEeCCCCC-CCcccCCceecCC----EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 494 STPKTLAQST-TSNIYAVGTKCSH-YGAPLVKGSLGDG----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 494 ~~~~~~~~~~-~g~~~a~~~~C~H-~~~~l~~g~~~~~----~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
+++.+++++. +|++||++|.||| ++.+|+.|.+++. .|.||+|+|+|+++||+|.+.+. .++++|+++++++.
T Consensus 22 ~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~~ypvrv~~g~ 100 (104)
T PF13806_consen 22 DGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGECLEDPD-VSLRTYPVRVEDGQ 100 (104)
T ss_dssp TTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTEESSECS-EBSBEEEEEECTTE
T ss_pred CCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcCcCCCCC-CcEEeEEEEEECCE
Confidence 3556666666 9999999999999 7999999999876 89999999999999999998766 68999999998777
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+++
T Consensus 101 V~V 103 (104)
T PF13806_consen 101 VYV 103 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 197
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.46 E-value=1.6e-13 Score=129.35 Aligned_cols=77 Identities=23% Similarity=0.460 Sum_probs=64.9
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCC-CcccCCceecCCE----EEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHY-GAPLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~-~~~l~~g~~~~~~----~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++..+++++..+|++||++|.|||+ +.+|+.|.+.++. |+||||+|+|+++||++..+|+. +|+.|+++++++.
T Consensus 22 ~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~~-~L~~y~v~v~~g~ 100 (105)
T TIGR02378 22 GDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGRCLEDDSG-SVRTYEVRVEDGR 100 (105)
T ss_pred CCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCccccCCCCc-cEeeEeEEEECCE
Confidence 3344555544578999999999999 8999999887665 99999999999999999987765 8999999998887
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+|+
T Consensus 101 v~v 103 (105)
T TIGR02378 101 VYV 103 (105)
T ss_pred EEE
Confidence 765
No 198
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.46 E-value=2.2e-13 Score=129.79 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=69.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC-------------CCCCeE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM-------------DSLPCY 559 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~-------------~~l~~~ 559 (1466)
.+..++++++.+|+++|++|+|||++++|+.|.++++.|+||||||+|+ .+|+|...|.. .+++.|
T Consensus 23 ~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd-~~G~~~~iP~~~~~~~~~~~~p~~~~~~~~ 101 (123)
T cd03537 23 FGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYD-EQGQCVHIPGHSTAVRRLEPVPRGARQPTL 101 (123)
T ss_pred CCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEEC-CCCCEEECCCCcccccccccCCcccccccE
Confidence 3466777777789999999999999999999999999999999999999 78999877642 357899
Q ss_pred EEEEEcCeEEEEEccc
Q psy2951 560 KVTIQNDDSVVVQARK 575 (1466)
Q Consensus 560 ~v~i~~~~~~~~~~~~ 575 (1466)
++++.+|-+|+....+
T Consensus 102 pv~e~~G~Vwv~~g~~ 117 (123)
T cd03537 102 VTAERYGYVWVWYGSP 117 (123)
T ss_pred eEEEECCEEEEEcCCC
Confidence 9999888888766443
No 199
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.46 E-value=1.3e-12 Score=152.01 Aligned_cols=266 Identities=15% Similarity=0.208 Sum_probs=149.9
Q ss_pred CCCcEEEECCchHHHHHHHHHH-hcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLR-QNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~-~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
..++|+||||||||+.||..|. +.|. +|+|+|+.+.++. ......... .....+.......+...++++..+.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~--~VtlfEk~p~pgG-LvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV--KVDIFEKLPNPYG-LIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcc-EEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 3568999999999999999864 5677 8999999986541 111110000 000111111112234456777644322
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCC---------C------CCcEEEec-------CHHHHH---h
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD---------G------VNKVFYLR-------TVEDAN---N 1197 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~---------g------~~~v~~~~-------~~~~~~---~ 1197 (1466)
. +.+..++- ...||+||+|||+.+..++++. | +.|+|..+ ..-++. .
T Consensus 115 G-------~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~ 186 (506)
T PTZ00188 115 G-------VDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKA 186 (506)
T ss_pred c-------CccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccc
Confidence 1 11333322 2379999999999776655210 1 12333221 111110 1
Q ss_pred hhcc---cCCCCeEEEEcCCHHHHHHHHHH--------------------hcCCC-eEEEEcCCCcC-------------
Q psy2951 1198 IAPH---ITPESNVVVIGSSFIGMEAAAFC--------------------ASKVK-SVTVVGRGAVP------------- 1240 (1466)
Q Consensus 1198 l~~~---~~~~~~vvVvG~g~~g~e~a~~l--------------------~~~g~-~v~vv~~~~~~------------- 1240 (1466)
+... +...++++|||+|++++++|..| ++.+. +|+++.|....
T Consensus 187 ~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~ 266 (506)
T PTZ00188 187 VDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELI 266 (506)
T ss_pred ccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHh
Confidence 1111 22467999999999999999964 33232 68888876411
Q ss_pred -Ccc---cc-cHH-----------------------HHHHHHHHHH----------hCCcEEEcCceEEEEEecCCCcEE
Q psy2951 1241 -FQE---SL-GKE-----------------------VGERITKLFE----------SKGVKFVMKANVSSFEKNEKNDVT 1282 (1466)
Q Consensus 1241 -~~~---~~-~~~-----------------------~~~~l~~~~~----------~~gv~~~~~~~v~~i~~~~~g~~~ 1282 (1466)
++. .+ +.+ ..+.+.+... .+-+.|++.....+|. +.++++.
T Consensus 267 ~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~-~~~~~v~ 345 (506)
T PTZ00188 267 SLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIR-PIDGAMK 345 (506)
T ss_pred cCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEE-CCCCcEe
Confidence 000 00 000 1122333221 1346677777888887 3346777
Q ss_pred EEEcC-----------CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc--cCCCEEEecccccCCC
Q psy2951 1283 AANLD-----------NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET--NVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1283 ~v~l~-----------~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t--~~~~v~a~GD~a~~p~ 1347 (1466)
.+++. +| ++++||+|+-++|+... ++ .|++.| +. +..+ ..+. ..|++|++|.+.+.|.
T Consensus 346 ~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~-p~---~g~pFd-~~-~~n~-~grv~~~~~g~Y~~GWiKrGP~ 418 (506)
T PTZ00188 346 NVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS-NF---AENLYN-QS-VQMF-KEDIGQHKFAIFKAGWFDKGPK 418 (506)
T ss_pred EEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC-CC---CCCCcc-cc-CCCC-CCcccCCCCCcEEeeecCcCCC
Confidence 77765 33 36899999999999765 21 245555 22 2211 1222 2699999999999887
Q ss_pred cc
Q psy2951 1348 HS 1349 (1466)
Q Consensus 1348 ~~ 1349 (1466)
..
T Consensus 419 Gv 420 (506)
T PTZ00188 419 GN 420 (506)
T ss_pred ce
Confidence 54
No 200
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.46 E-value=1.5e-13 Score=131.58 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=69.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC------CCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD------SLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~------~l~~~~v~i~~~ 566 (1466)
.+.+++++++.+|+++|++|.|||++++|+.|.+.++.|+||||||+|+ .+|++...|+.. +|+.|+++++++
T Consensus 25 ~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd-~~G~~~~~p~~~~~~~~~~l~~~~v~~~~g 103 (116)
T cd03532 25 LGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD-SDGRCVHMPGQERVPAKACVRSYPVVERDA 103 (116)
T ss_pred CCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEc-CCCCEEeCCCCCCCCCccccccCCEEEECC
Confidence 3466666666799999999999999999999999999999999999999 689999888754 799999999888
Q ss_pred eEEEEEc
Q psy2951 567 DSVVVQA 573 (1466)
Q Consensus 567 ~~~~~~~ 573 (1466)
.+|+...
T Consensus 104 ~v~v~~~ 110 (116)
T cd03532 104 LIWIWMG 110 (116)
T ss_pred EEEEEcC
Confidence 8877553
No 201
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.45 E-value=5.7e-13 Score=127.31 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=62.4
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECC-CCeeecCCCCCCCCeEEEEEE--cCeEEEEEc
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQ--NDDSVVVQA 573 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~-~G~~~~~p~~~~l~~~~v~i~--~~~~~~~~~ 573 (1466)
+|+++|+++.|||++++|.++. +++.+.||||+|+|+++ +|++..+|+..+|++|+++++ ++.+++..+
T Consensus 45 ~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ypv~ve~~~g~V~~~~~ 116 (126)
T cd03476 45 DNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPARGGQMVSGQATQNLPQIVLEYDEASGDIYAVGV 116 (126)
T ss_pred CCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCCCCCeEEcCCCCCCCCeEEEEEECCCCEEEEEEe
Confidence 6999999999999999999977 77899999999999997 679999999899999999998 777877653
No 202
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.44 E-value=3.3e-13 Score=120.73 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=53.6
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCC--ceecCCEEEccCCCceEECCCCeeecCCCCCC
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVK--GSLGDGRVRCPWHGACFNIATGDIEDFPGMDS 555 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~--g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~ 555 (1466)
++.+++++.+|++||++|.|||++++|.. |.++++.|.||||+|+||++||++...|...+
T Consensus 30 g~~I~V~~~~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~~~ 92 (107)
T cd03473 30 GKKYIIYKSKSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDSFC 92 (107)
T ss_pred CcEEEEEEECCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCcccc
Confidence 45666677899999999999999999998 56889899999999999999999998776544
No 203
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.43 E-value=1.5e-13 Score=127.74 Aligned_cols=72 Identities=32% Similarity=0.520 Sum_probs=65.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
++..+|+++|+++.|||.+.+|..|.+.++.+.||||+|+|+++||++...|...+|++|++++ +++.++++
T Consensus 29 ~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~y~v~v-~~g~v~V~ 100 (101)
T TIGR02377 29 YRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKV-VDGAVYVD 100 (101)
T ss_pred EEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCCccCCcceEeEEE-ECCEEEEe
Confidence 3334789999999999999999999999999999999999999999999999888999999999 67777774
No 204
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.43 E-value=5.8e-13 Score=130.97 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=66.9
Q ss_pred CCCCEEEEEee-CCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCC-----------CCCCeE
Q psy2951 493 SSTPKTLAQST-TSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCY 559 (1466)
Q Consensus 493 ~~~~~~~~~~~-~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------~~l~~~ 559 (1466)
.+..++++++. +|+++|++|.|||+|++|+.|.+. ++.|+||||||+|+ .+|+|...|.. .+|+.|
T Consensus 38 ~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~g~~~~~~~~~l~~y 116 (138)
T cd03480 38 LGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFD-GSGSCQRIPQAAEGGKAHTSPRACVASL 116 (138)
T ss_pred CCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEEC-CCCCEEECCCCccccccCCCcccccceE
Confidence 44566666654 999999999999999999999875 56999999999999 58999987643 468899
Q ss_pred EEEEEcCeEEEEEccc
Q psy2951 560 KVTIQNDDSVVVQARK 575 (1466)
Q Consensus 560 ~v~i~~~~~~~~~~~~ 575 (1466)
+++++++.+|+....+
T Consensus 117 pv~v~~g~V~V~~~~~ 132 (138)
T cd03480 117 PTAVRQGLLFVWPGEP 132 (138)
T ss_pred eEEEECCEEEEecCCh
Confidence 9999888777655433
No 205
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.43 E-value=6.3e-13 Score=124.94 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=67.5
Q ss_pred CCCEEEEEeeCCeE--EEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 494 STPKTLAQSTTSNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~--~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++..+++++.+|++ ||+++.|||+||+|.++.. ++.+.||||+|+|+ .+|++..+|+..+|+.|+++++++.+++.
T Consensus 33 ~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd-~tG~~~~gPa~~~L~~y~V~vedg~I~V~ 110 (126)
T cd03471 33 GDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYD-ATGKVVRGPAPLSLALVHATVDDDKVVLS 110 (126)
T ss_pred CCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEEC-CCCCEecCCCCCCCceEeEEEECCEEEEE
Confidence 47888888889977 8999999999999988754 45999999999999 78999999998999999999988887764
No 206
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.41 E-value=6.3e-13 Score=132.18 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC---------CCCeEEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD---------SLPCYKVTI 563 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~---------~l~~~~v~i 563 (1466)
.+..++++++.+|+++|++|.|||+|++|++|.+.++.++||||||+|+. +|+|...|+.. +|+.|++++
T Consensus 43 ~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~-~G~~~~~P~~~~~~~~~~~~~l~~~~v~~ 121 (144)
T cd03479 43 LGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDV-DGQCLEMPSEPPDSQLKQKVRQPAYPVRE 121 (144)
T ss_pred CCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCCCcEECC-CCCEEECCCCccccCCccccCcceEeEEE
Confidence 44555555557999999999999999999999998889999999999997 79999888643 579999999
Q ss_pred EcCeEEEEEcc
Q psy2951 564 QNDDSVVVQAR 574 (1466)
Q Consensus 564 ~~~~~~~~~~~ 574 (1466)
+++.+|+....
T Consensus 122 ~~G~I~V~~~~ 132 (144)
T cd03479 122 RGGLVWAYMGP 132 (144)
T ss_pred ECCEEEEECCC
Confidence 88888876543
No 207
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.41 E-value=5.2e-13 Score=129.63 Aligned_cols=78 Identities=26% Similarity=0.460 Sum_probs=66.6
Q ss_pred CCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCCC----------CCCeEEEE
Q psy2951 494 STPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMD----------SLPCYKVT 562 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----------~l~~~~v~ 562 (1466)
+..+++++..+|+++|++|.|||++++|.+|.+ +++.|+||||+|+|+.+ |++...|+.. +|+.|+++
T Consensus 23 ~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~-G~~~~~P~~~~~~~~~~~~~~L~~~~v~ 101 (118)
T cd03469 23 GEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLD-GKLVGVPREEGFPGFDKEKLGLRTVPVE 101 (118)
T ss_pred CccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCC-CcEEeCCcccccCCCCHHHCCCeEEEEE
Confidence 345555544699999999999999999999998 78899999999999998 9999998865 48999999
Q ss_pred EEcCeEEEEE
Q psy2951 563 IQNDDSVVVQ 572 (1466)
Q Consensus 563 i~~~~~~~~~ 572 (1466)
++++.+|+..
T Consensus 102 ~~~g~v~v~~ 111 (118)
T cd03469 102 EWGGLIFVNL 111 (118)
T ss_pred EECCEEEEEc
Confidence 9888777643
No 208
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.40 E-value=2.6e-11 Score=133.46 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=164.6
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhc--c--------------------------
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D-------------------------- 92 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~--~-------------------------- 92 (1466)
+...|++.||-||+.|+.|..|.+.+. .....+++.+...+....+.+.- .
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~-~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSG-LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccC-cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 456899999999999999999998775 33333555543332222111110 0
Q ss_pred -------------cCcccccccChhhhhcCCeEEEeCceEEEe--cccc-cc--EEEecCCcEEecCEEEEccCCCCCCC
Q psy2951 93 -------------IKADSILLRTEEFYKDNDIHVIKGKKIISD--SELN-EK--KIKLQDGTSIDFTKIYLATGSSPRTI 154 (1466)
Q Consensus 93 -------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~--~~~~-~~--~v~~~~~~~~~~d~lviAtG~~~~~~ 154 (1466)
+...++..+ -.|....--.+..++.|... .+.+ .. .+.+.++..++++.|||++|.+|..|
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY-~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDY-CQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHH-HHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 000011111 22222223456666666521 1111 12 25556667899999999999999987
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC----CCEEEEEeecCccccc--------cc
Q psy2951 155 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQE--------SL 222 (1466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~--------~~ 222 (1466)
+.......-..+++.+.... ...+...++|.|||+|.+|.|+-..|... ..++.|+.|+...++- .+
T Consensus 161 ~~f~~l~~~~vfHss~~~~~-~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F 239 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLER-HPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYF 239 (436)
T ss_pred hHHhCcCccceeehHHHHHh-hHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhc
Confidence 76554443222234443332 22233344599999999999999887643 3458889998654431 12
Q ss_pred CHHHHHH------------------------------H-----HHHHH--hCCcEEEcCceEEEEEecCCCCeE----EE
Q psy2951 223 GKEVGER------------------------------I-----TKLFE--SKGVKFVMKANVSSFEKNEKNDVT----AA 261 (1466)
Q Consensus 223 ~~~~~~~------------------------------l-----~~~l~--~~GV~i~~~~~v~~i~~~~~~~~~----~v 261 (1466)
.|++.+. + ++.+. +..|+++.++.+..++..++|.+. ..
T Consensus 240 ~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~ 319 (436)
T COG3486 240 SPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHH 319 (436)
T ss_pred CchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeec
Confidence 2332222 1 11111 346889999999999987665422 11
Q ss_pred EcCCCcEEeccEEEEeeccccCcc-ccccC--CceecCCccEEECCCCCcC----C-CCEEEeccc
Q psy2951 262 NLDNGTTIPADLVIVGIGTVLNTN-YLDGK--GVELNGQKAVVVNEYLETN----V-PGVYAGGDI 319 (1466)
Q Consensus 262 ~~~~g~~i~~D~Vi~a~G~~p~~~-~l~~~--gl~~~~~g~i~vd~~~~t~----~-~~iya~GD~ 319 (1466)
.+++.++++.|.||+|||++...+ |++.. .+..++.|...++..++.. . -.||+.|=.
T Consensus 320 ~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e 385 (436)
T COG3486 320 ETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAE 385 (436)
T ss_pred cCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccc
Confidence 233446889999999999985544 66543 2566788888898876542 1 269988844
No 209
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.40 E-value=1e-12 Score=122.58 Aligned_cols=73 Identities=32% Similarity=0.710 Sum_probs=65.3
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEc
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~ 565 (1466)
.+...+++++.+|+++|+++.|||++++|.++..++..+.||||+|+|++++|++..+|+..++..|++++.+
T Consensus 21 ~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~~~~ 93 (98)
T cd03467 21 GGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEG 93 (98)
T ss_pred CCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCCCCCcCEEEEEEeC
Confidence 3456666666678999999999999999999988888999999999999999999999998899999998864
No 210
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.39 E-value=2.2e-12 Score=123.28 Aligned_cols=68 Identities=22% Similarity=0.395 Sum_probs=60.4
Q ss_pred eCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCC-CeeecCCCCCCCCeEEEEEEc-CeEEEE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQN-DDSVVV 571 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~-G~~~~~p~~~~l~~~~v~i~~-~~~~~~ 571 (1466)
.+|++||+++.|||++++|.++. ++..+.||||+|+|+++| |++..+|+..+|+.|++++++ +.+|.+
T Consensus 47 ~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~y~v~v~~~G~V~~~ 116 (129)
T TIGR02694 47 PDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQIVLRVADNGDIFAE 116 (129)
T ss_pred cCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCCCCCcEECCCCCCCCCeeEEEEECCCeEEEE
Confidence 58999999999999999999875 677999999999999997 599989998999999999975 566643
No 211
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.38 E-value=8.9e-12 Score=146.58 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=114.2
Q ss_pred EEECCCHhHHHHH-HHHh----hCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEE
Q psy2951 186 VVIGSSFIGMEAA-AFCA----SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 260 (1466)
Q Consensus 186 vVvGgG~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~ 260 (1466)
+|++.+.+|+|.+ ..++ ++|.+|+++.+.+..++. .++.+.+.+.+++.|++++++++|.+++.++ +.+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~ 294 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTA 294 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEE
Confidence 6788999999998 5554 579999999887765532 4788889999999999999999999998654 44555
Q ss_pred EEcCCC--cEEeccEEEEeeccccCcccc-----------------------------------ccCCceecCCccEEEC
Q psy2951 261 ANLDNG--TTIPADLVIVGIGTVLNTNYL-----------------------------------DGKGVELNGQKAVVVN 303 (1466)
Q Consensus 261 v~~~~g--~~i~~D~Vi~a~G~~p~~~~l-----------------------------------~~~gl~~~~~g~i~vd 303 (1466)
+...++ ..+.+|.||+|+|+.++..+. ...|+.+|++ ...+|
T Consensus 295 v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~ 373 (422)
T PRK05329 295 VWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLD 373 (422)
T ss_pred EEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCccc
Confidence 544444 358999999999987655431 1223333332 22334
Q ss_pred CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCC
Q psy2951 304 EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 304 ~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 354 (1466)
...++..+|+||+|++.+.+.....| .|. -.|+..|..|+++++..
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~-Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREG----CGS-GVALATALHAAEQIAEE 419 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhC----CCc-hhHHHHHHHHHHHHHHh
Confidence 44455689999999999887654433 222 24888999999998754
No 212
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.38 E-value=2.1e-12 Score=127.22 Aligned_cols=79 Identities=24% Similarity=0.486 Sum_probs=65.3
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCce--ecCCEEEccCCCceEECCCCeeecC---CC-----CCCCCeEEEEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDF---PG-----MDSLPCYKVTIQ 564 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~--~~~~~~~Cp~H~~~f~~~~G~~~~~---p~-----~~~l~~~~v~i~ 564 (1466)
+..+++++.+|+++|++|.|||+|++|+.|. .+++.|+||||||+|++++|+|... |+ ..+|+.|++++.
T Consensus 36 g~~i~l~r~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~~ypv~~~ 115 (136)
T cd03548 36 GEPILLRRVDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEA 115 (136)
T ss_pred CcEEEEEecCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCccEEEcccCCCccccccCCCceEeEEEE
Confidence 4456666789999999999999999999885 5678999999999999999999853 32 346899999998
Q ss_pred cCeEEEEEc
Q psy2951 565 NDDSVVVQA 573 (1466)
Q Consensus 565 ~~~~~~~~~ 573 (1466)
++.+|+...
T Consensus 116 ~g~V~v~~~ 124 (136)
T cd03548 116 KGMIFVFVG 124 (136)
T ss_pred CCEEEEEeC
Confidence 887776543
No 213
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.38 E-value=1.1e-12 Score=118.17 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=59.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQ 564 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~ 564 (1466)
++..+++++..+|+++|+++.|||+|++|.+|.. +..+.||||+|+|+ .+|+++..|+..+|..|+++..
T Consensus 19 ~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd-~~G~~~~~Pa~~~l~~y~v~~~ 88 (91)
T cd03477 19 GGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFS-YDGEVIEGPAVSGLKPADDAPI 88 (91)
T ss_pred CCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEEC-CCCcEeeCCCCCCCCeeEeecc
Confidence 3344444444699999999999999999998865 45999999999999 6899999999999999999653
No 214
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.36 E-value=6.4e-12 Score=147.77 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=114.8
Q ss_pred EEEECCChHHHHHH-HHHh----ccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceE
Q psy2951 737 VVVIGSSFIGMEAA-AFCA----SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 811 (1466)
Q Consensus 737 vvVvG~G~~g~e~A-~~l~----~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~ 811 (1466)
=.|++.+.+|+|.+ ..++ ++|.+|+++.+.+..+.. .++.+.+.+.+++.|+++++++++.+++.. ++.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence 37789999999998 6665 469999999888765532 478888999999999999999999999843 44455
Q ss_pred EEECCCCc--EEecCEEEEccccccCcccc-----------------------------------ccCCceeeCCCcEEe
Q psy2951 812 AANLDNGT--TIPADLVIVGIGTVLNTNYL-----------------------------------DGKGVELNGQKAVVV 854 (1466)
Q Consensus 812 ~v~~~~g~--~i~~D~vi~a~G~~p~~~~~-----------------------------------~~~gl~~~~~G~i~v 854 (1466)
.+...+++ .+++|.||+|+|..+...+. ..+|+.+|+. +..+
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~ 372 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPL 372 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcc
Confidence 55544553 58999999999987665441 1233443333 3334
Q ss_pred CCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 855 NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 855 d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
|...++..+|+||+|++...++....+ .+. -.|+..|..||++|+..
T Consensus 373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~-Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 373 DSQGGPVIENLYAAGAVLGGYDPIREG----CGS-GVALATALHAAEQIAEE 419 (422)
T ss_pred cCCCCeeccceEEeeehhcCCchHHhC----CCc-hhHHHHHHHHHHHHHHh
Confidence 444555689999999999887654211 111 47889999999988753
No 215
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=1.5e-10 Score=127.53 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=171.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc------------c-------------Cc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD------------I-------------KA 647 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~------------~-------------~~ 647 (1466)
....|++.||-||+-|+.|..|...+. .....+|+.+.+.++...+...-. . ..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~-~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSG-LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccC-cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 356899999999999999999998874 346777877654433322211100 0 00
Q ss_pred ccc---------------cccCHhHhhhCCcEEEEceEEEEec--cccc---cEEEccCCCEEecCEEEEcCCCCCCcCC
Q psy2951 648 DSI---------------LLRTEEFYKDNDIHVIKGKKIISDS--ELNE---KKIKLQDGTSIDFTKIYLATGSSPRTIS 707 (1466)
Q Consensus 648 ~~~---------------~~~~~~~~~~~gv~~~~~~~v~~i~--~~~~---~~v~~~~~~~~~~d~lviAtG~~~~~~~ 707 (1466)
..+ ...+-.|....--.++++++|+.|. +.+. ..+.+.++..+.+..|||++|.+|+.|+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence 000 1111233334445678899888441 3222 2256667779999999999999999997
Q ss_pred CCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc----CCeEEEEeecCccCcc--------c
Q psy2951 708 QADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQE--------S 773 (1466)
Q Consensus 708 ~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~~~~--------~ 773 (1466)
....+. .+++ +.+..... ..+...++|.|||||-+|.|+-..|... ..++.++.|+...++. .
T Consensus 162 ~f~~l~~~~vfH--ss~~~~~~-~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~ 238 (436)
T COG3486 162 CFRSLIGERVFH--SSEYLERH-PELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEY 238 (436)
T ss_pred HHhCcCccceee--hHHHHHhh-HHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhh
Confidence 442333 3443 33332222 2222344599999999999999888654 3457889888753321 1
Q ss_pred cCHHHH------------------------------HHHHHHH-------HhcCcEEEccceEEEEEecCCCceEEEEC-
Q psy2951 774 LGKEVG------------------------------ERITKLF-------ESKGVKFVMKANVSSFEKNEKNDVTAANL- 815 (1466)
Q Consensus 774 ~~~~~~------------------------------~~~~~~l-------~~~gv~~~~~~~v~~i~~~~~~~~~~v~~- 815 (1466)
+.++.. +.+.+.| .+..|.++.++++..++...+|+ ..+.+
T Consensus 239 F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~ 317 (436)
T COG3486 239 FSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLR 317 (436)
T ss_pred cCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEe
Confidence 112211 2222221 13467888999999999665553 23332
Q ss_pred ----CCCcEEecCEEEEccccccCcc-ccccCC--ceeeCCCcEEeCCCCCCC-----CCCeEEecccccc
Q psy2951 816 ----DNGTTIPADLVIVGIGTVLNTN-YLDGKG--VELNGQKAVVVNEYLETN-----VPGVYAGGDIAYA 874 (1466)
Q Consensus 816 ----~~g~~i~~D~vi~a~G~~p~~~-~~~~~g--l~~~~~G~i~vd~~~~t~-----~~~iya~GD~~~~ 874 (1466)
++.++++.|.||+|||++...+ |++.+. +..+++|...++..++.. .-.||+.|-+...
T Consensus 318 ~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 318 HHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred eccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 3345889999999999985544 665543 556788889998776532 2369999865443
No 216
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.33 E-value=1.3e-12 Score=120.67 Aligned_cols=66 Identities=64% Similarity=1.308 Sum_probs=61.1
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSV 1040 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~ 1040 (1466)
.+|+++|+.+.|||.+++|..|.+.++.+.||||+|.|++++|++...|...+|++|++++ +++.+
T Consensus 29 ~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~~~v~~-~~g~i 94 (95)
T cd03478 29 QGGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEV-EDGRV 94 (95)
T ss_pred ECCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccCCcceEEEEE-ECCEE
Confidence 3789999999999999999999999999999999999999999999999988999999999 45554
No 217
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.33 E-value=1.7e-12 Score=121.99 Aligned_cols=71 Identities=32% Similarity=0.615 Sum_probs=65.1
Q ss_pred hhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
.+|+++|+++.|||.+++|..|.+.+ +.+.||||+|+||++||++...|...+|+.|++++ +++.+++..+
T Consensus 31 ~~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~y~v~v-~~g~v~v~~~ 102 (106)
T PRK09965 31 VGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHV-EGGDIFIDLP 102 (106)
T ss_pred ECCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCCCCCCcceEeEEE-ECCEEEEEcc
Confidence 37899999999999999999999988 79999999999999999999888888999999999 6888888654
No 218
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.32 E-value=1.5e-12 Score=121.82 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=59.2
Q ss_pred hhhhhhhhcCCCCCCCcc-ccceeecC--C--EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAP-LVKGSLGD--G--RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~-l~~g~~~~--~--~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
.+|++||+++.|||.+++ |..|.+.+ + .+.||||+|+||++||++...|. .+|++|+|++ +++.+++.
T Consensus 35 ~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~typV~v-e~g~V~v~ 107 (108)
T PRK09511 35 HDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYDARV-KDGVVQLR 107 (108)
T ss_pred CCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCcccCCCCC-ccEeeEeEEE-ECCEEEEe
Confidence 368999999999999985 99999842 2 49999999999999999998776 4899999999 68888774
No 219
>PLN02281 chlorophyllide a oxygenase
Probab=99.31 E-value=7.2e-12 Score=145.34 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=70.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC----CCCCeEEEEEEcCeE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM----DSLPCYKVTIQNDDS 568 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~----~~l~~~~v~i~~~~~ 568 (1466)
.+..++++++.+|+++|++|+|||+++||+.|.++++.|+||||||+|+ .+|+|...|+. .+++.|+++++++.+
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD-~dG~cv~iP~~~~~~~~l~sYPV~e~~GlV 319 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYS-TDGECKKMPSTKLLKVKIKSLPCLEQEGMI 319 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEEC-CCCCEeeCCCCccccCCcceEeEEEECCEE
Confidence 3466666666789999999999999999999999999999999999999 68999999875 368899999988888
Q ss_pred EEEEcc
Q psy2951 569 VVVQAR 574 (1466)
Q Consensus 569 ~~~~~~ 574 (1466)
|+....
T Consensus 320 wV~lgd 325 (536)
T PLN02281 320 WIWPGD 325 (536)
T ss_pred EEEeCC
Confidence 876643
No 220
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.28 E-value=3.9e-12 Score=121.17 Aligned_cols=90 Identities=14% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCeEEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCC------CCCCC
Q psy2951 955 ADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG------MDSLP 1028 (1466)
Q Consensus 955 ~~~i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~------~~~l~ 1028 (1466)
++++..+.+.+...++++..+|+++|+.+.|||.+++|..|.++++.+.||||||+|++ +|++...|. ...|+
T Consensus 13 ~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~-~G~~~~~p~~~~~p~~~~l~ 91 (115)
T cd03531 13 DGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGG-DGRCKAIPYARRVPPLARTR 91 (115)
T ss_pred CCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECC-CCCEEECCcccCCCcccccc
Confidence 34444445455555555556899999999999999999999999999999999999998 999987653 45689
Q ss_pred eEEEEEEcCCEEEEEcch
Q psy2951 1029 CYKVTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1029 ~~~v~~~~~~~~~~~~~~ 1046 (1466)
.|++++ +++.+++....
T Consensus 92 ~ypv~~-~~g~v~v~~~~ 108 (115)
T cd03531 92 AWPTLE-RNGQLFVWHDP 108 (115)
T ss_pred eEeEEE-ECCEEEEECCC
Confidence 999998 78888886543
No 221
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.26 E-value=6.5e-12 Score=117.21 Aligned_cols=67 Identities=33% Similarity=0.678 Sum_probs=62.2
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++++|+.+.|||.+++|..|.+.++.+.||||||+|++++|++...|+..+|+.|++++ .++.+++
T Consensus 31 ~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~~~v~~-~~g~v~v 97 (98)
T cd03528 31 DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKV-EDGDVYV 97 (98)
T ss_pred CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCCCCCcceEeEEE-ECCEEEE
Confidence 568999999999999999999999999999999999999999999999988999999999 6777766
No 222
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.25 E-value=6.9e-12 Score=116.18 Aligned_cols=74 Identities=32% Similarity=0.636 Sum_probs=65.0
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecCC-EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGDG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~-~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
+++..+|++||+.+.|||.+++|..|.+.+. .+.||+|+++||++||++++.|....|++|++++ +++.++++.
T Consensus 31 ~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~~p~~~~l~~y~vrv-e~g~v~v~~ 105 (106)
T COG2146 31 LVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRV-EGGRVFVDL 105 (106)
T ss_pred EEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceecCCCCCceeEEeEEE-ECCEEEEec
Confidence 3445688999999999999999999999986 5999999999999999999988754499999999 588888753
No 223
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.23 E-value=3.2e-11 Score=123.07 Aligned_cols=77 Identities=27% Similarity=0.503 Sum_probs=67.2
Q ss_pred CCCCEEEEEeeCCeE--EEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~--~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.+...+++++.+|++ ||+++.|||+||+|.++..+ +.+.||||+++|+ .+|.+..+|+..+|+.|+++++++.+++
T Consensus 84 ~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd-~tG~~~~gPa~~~L~~y~v~v~~g~v~v 161 (178)
T PRK13474 84 KGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYD-ATGKVVRGPAPLSLALVHVTVEDDKVLF 161 (178)
T ss_pred CCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEEC-CCCCCccCCCCCCCCeEeEEEECCEEEE
Confidence 445557888889999 78899999999999988755 4999999999999 7899999999999999999998887765
Q ss_pred E
Q psy2951 571 V 571 (1466)
Q Consensus 571 ~ 571 (1466)
-
T Consensus 162 ~ 162 (178)
T PRK13474 162 S 162 (178)
T ss_pred E
Confidence 3
No 224
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.23 E-value=1.1e-11 Score=115.29 Aligned_cols=70 Identities=26% Similarity=0.596 Sum_probs=61.2
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|++++|++.. |...+|+.|++++ +++.+++
T Consensus 28 ~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~~~~l~~y~v~v-~~g~v~v 97 (98)
T cd03530 28 FRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PDEGCVRTFPVKV-EDGRVYL 97 (98)
T ss_pred EEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CCCCccceEeEEE-ECCEEEE
Confidence 44446899999999999999999999999999999999999999999876 5556899999999 5777765
No 225
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.23 E-value=8.6e-12 Score=116.83 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=59.7
Q ss_pred hhhhhhhhhhhhcCCCCCCCcc-ccceeec----CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~-l~~g~~~----~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++..+|++||+.+.|||.+++ |..|.+. +..+.||||+|.|+++||++...|.. +|+.|++++ +++.+++
T Consensus 27 l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~~-~~g~v~v 102 (103)
T cd03529 27 IFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRCLEDEDV-SVATFPVRV-EDGEVYV 102 (103)
T ss_pred EEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCccCCCCc-cEeeEeEEE-ECCEEEE
Confidence 3444455999999999999997 7888874 24899999999999999999998865 799999999 5777776
No 226
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.22 E-value=1.2e-11 Score=117.48 Aligned_cols=73 Identities=23% Similarity=0.371 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++..+|+++|+.+.|||.+++|..|.++++.+.||||||+|++++|++.. |...+|+.|++++ .++.+++...
T Consensus 28 ~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~~~~L~~~~v~v-~~g~v~v~~~ 100 (108)
T cd03474 28 VAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PRDCRLARYPVKV-EGGDILVDTE 100 (108)
T ss_pred EEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CCCCccceEeEEE-ECCEEEEeCC
Confidence 34457899999999999999999999998999999999999999999986 5567899999999 7888888654
No 227
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.22 E-value=1.2e-11 Score=121.08 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=68.7
Q ss_pred EEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCC---------CCCCeEE
Q psy2951 961 ILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM---------DSLPCYK 1031 (1466)
Q Consensus 961 ~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~---------~~l~~~~ 1031 (1466)
+.+.+...++.+..+|+++|+.+.|||.+++|..|.+.++.+.||||+|+|| .+|++...|.. ..|++|+
T Consensus 35 ~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd-~~G~~~~~P~~~~~~~~~~~~~l~~y~ 113 (134)
T cd04338 35 LSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFG-GEGKCVKIPQLPADAKIPKNACVKSYE 113 (134)
T ss_pred EEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEEC-CCCCEEECCCCCccCCCCcccCcceEe
Confidence 3334444444555688999999999999999999999999999999999999 59999876543 4589999
Q ss_pred EEEEcCCEEEEEcch
Q psy2951 1032 VTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~~ 1046 (1466)
+++ .++.+++....
T Consensus 114 v~~-~~G~V~V~~~~ 127 (134)
T cd04338 114 VRD-SQGVVWMWMSE 127 (134)
T ss_pred EEE-ECCEEEEEcCC
Confidence 998 78888887643
No 228
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.21 E-value=1.4e-11 Score=119.61 Aligned_cols=86 Identities=19% Similarity=0.404 Sum_probs=71.3
Q ss_pred EEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC----CCCeEEEE
Q psy2951 958 VLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----SLPCYKVT 1033 (1466)
Q Consensus 958 i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~----~l~~~~v~ 1033 (1466)
...+.+.+...++++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|| .+|++...|... .|++|+++
T Consensus 32 ~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~~~~l~~y~v~ 110 (129)
T cd04337 32 MVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPCM 110 (129)
T ss_pred eEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEEC-CCCCEEeCCcCCCccCCcceEeEE
Confidence 3333444444445555688999999999999999999999999999999999999 999999988764 79999999
Q ss_pred EEcCCEEEEEcc
Q psy2951 1034 IQNDDSVVVQAR 1045 (1466)
Q Consensus 1034 ~~~~~~~~~~~~ 1045 (1466)
+ +++.++++..
T Consensus 111 v-~~g~V~V~~~ 121 (129)
T cd04337 111 E-QDGMIWVWPG 121 (129)
T ss_pred E-ECCEEEEEcC
Confidence 8 7888888753
No 229
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=99.20 E-value=3e-11 Score=133.45 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=68.3
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC------CCCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM------DSLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~------~~l~~~~v~i~~~ 566 (1466)
.+..++++++.+|+++|++|.|||++++|+.|.++++.|.||||||+|+. +|+|...|.. .+++.|++++++|
T Consensus 94 ~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~-~G~C~~iP~~~~~~~~~~v~tYPV~e~dG 172 (394)
T PLN00095 94 FNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYET-GGECAKMPSCKKFLKGVFADAAPVIERDG 172 (394)
T ss_pred CCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECC-CCCEeeCCCccccccccccceEEEEEECC
Confidence 34666666667899999999999999999999999999999999999998 7999988854 2467999999888
Q ss_pred eEEEEEc
Q psy2951 567 DSVVVQA 573 (1466)
Q Consensus 567 ~~~~~~~ 573 (1466)
.+|+-..
T Consensus 173 lVwVw~G 179 (394)
T PLN00095 173 FIFLWAG 179 (394)
T ss_pred EEEEEeC
Confidence 8876543
No 230
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.19 E-value=1.1e-11 Score=114.48 Aligned_cols=71 Identities=35% Similarity=0.688 Sum_probs=62.8
Q ss_pred hhhhhhhhhhhcCCCCC-CCccccceeecCC----EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSH-YGAPLVKGSLGDG----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h-~g~~l~~g~~~~~----~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
++..++++||+++.||| .+.+|+.|.+.+. .+.||+|++.|+++||++++.+. .+|++|+|++ +++.++++
T Consensus 29 f~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~~ypvrv-~~g~V~V~ 104 (104)
T PF13806_consen 29 FRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGECLEDPD-VSLRTYPVRV-EDGQVYVE 104 (104)
T ss_dssp EEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTEESSECS-EBSBEEEEEE-CTTEEEEE
T ss_pred EEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcCcCCCCC-CcEEeEEEEE-ECCEEEEC
Confidence 33347899999999999 7999999999876 89999999999999999998766 6789999999 68888773
No 231
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.19 E-value=6.6e-11 Score=113.23 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+++++|+++.|||.||.+.++...++.+.||||||+|++. |+...+|+..+|+.|+++++++..++
T Consensus 59 ~~~~~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl~-G~~~~gPa~~~L~~~p~~~~~~~~l~ 124 (126)
T cd03470 59 KPEWLVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDAS-GRIRKGPAPLNLEVPPYKFLSDTTIV 124 (126)
T ss_pred CCcEEEEeCcCCCCCCeeccccCCCCEEEecCcCCEECCC-CeEecCCCCCCCCeeeEEEecCCEEE
Confidence 7799999999999999998877677899999999999995 99999999999999999997755443
No 232
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.19 E-value=1.4e-11 Score=117.94 Aligned_cols=79 Identities=27% Similarity=0.513 Sum_probs=67.2
Q ss_pred cCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC------CCCeEEEEEEcCC
Q psy2951 965 GMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD------SLPCYKVTIQNDD 1038 (1466)
Q Consensus 965 g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~------~l~~~~v~~~~~~ 1038 (1466)
+....+.+..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|+ .+|++...|... +|++|++++ .++
T Consensus 26 g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd-~~G~~~~~p~~~~~~~~~~l~~~~v~~-~~g 103 (116)
T cd03532 26 GEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD-SDGRCVHMPGQERVPAKACVRSYPVVE-RDA 103 (116)
T ss_pred CceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEc-CCCCEEeCCCCCCCCCccccccCCEEE-ECC
Confidence 333334445678999999999999999999999999999999999999 799999887654 699999998 788
Q ss_pred EEEEEcc
Q psy2951 1039 SVVVQAR 1045 (1466)
Q Consensus 1039 ~~~~~~~ 1045 (1466)
.+++...
T Consensus 104 ~v~v~~~ 110 (116)
T cd03532 104 LIWIWMG 110 (116)
T ss_pred EEEEEcC
Confidence 8888754
No 233
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.18 E-value=2e-11 Score=115.10 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhhcCCCCCC-CccccceeecCCE----EEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHY-GAPLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~-g~~l~~g~~~~~~----~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
+++..+++++|+.+.|||. +.+|..|.+.++. +.||||+|+|+++||++...|.. +|++|++++ +++.+++.
T Consensus 28 v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~~-~L~~y~v~v-~~g~v~v~ 104 (105)
T TIGR02378 28 IFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGRCLEDDSG-SVRTYEVRV-EDGRVYVA 104 (105)
T ss_pred EEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCccccCCCCc-cEeeEeEEE-ECCEEEEe
Confidence 3444467899999999999 8889999888766 99999999999999999987764 799999999 67788774
No 234
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.18 E-value=7.4e-11 Score=113.97 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCCC-------------CCCC
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM-------------DSLP 557 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~~-------------~~l~ 557 (1466)
.++..++++++.+|+++|++|.|||++++|+++...+ ..++||||||+|+. +|++...|.. .+|+
T Consensus 21 ~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~-~G~~~~~p~~~~~~~~~~~~~~~~~L~ 99 (123)
T cd03536 21 MGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRP-NGDFIGAPVEKECMHGKMRTKAELGLH 99 (123)
T ss_pred ECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECC-CCcEEECCccccccccCCCCHHHCCCc
Confidence 3434444555569999999999999999999877653 47999999999996 6988877642 4588
Q ss_pred eEEEEEEcCeEEEEEc
Q psy2951 558 CYKVTIQNDDSVVVQA 573 (1466)
Q Consensus 558 ~~~v~i~~~~~~~~~~ 573 (1466)
.|++.+.++-+|+...
T Consensus 100 ~~~v~~~~g~Ifv~~~ 115 (123)
T cd03536 100 KARVTLYGGLIFATWN 115 (123)
T ss_pred ceeEEEECCEEEEEeC
Confidence 9999887777766443
No 235
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.18 E-value=1.6e-10 Score=102.93 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=74.1
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 815 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~ 815 (1466)
+++|||||++|+|+|..|+++|++||++++.+.++ +.+++++.+.+.+.|+++||++++++.+++++.++++ +. |.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 68999999999999999999999999999999988 8899999999999999999999999999999976665 65 888
Q ss_pred CCC
Q psy2951 816 DNG 818 (1466)
Q Consensus 816 ~~g 818 (1466)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 775
No 236
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.17 E-value=7.1e-11 Score=114.09 Aligned_cols=59 Identities=24% Similarity=0.583 Sum_probs=50.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPG 552 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~ 552 (1466)
++..++++++.+|+++|++|.|||+|++|..|...+ ..+.||||+|+|+ .+|++...|.
T Consensus 24 ~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd-~tG~~~~~p~ 83 (123)
T cd03535 24 GDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYR-NTGRLVGVPA 83 (123)
T ss_pred CCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEEC-CCcCEeeCCC
Confidence 445566666679999999999999999999988775 6899999999999 7999998765
No 237
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.17 E-value=1e-10 Score=111.02 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC----------CCCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----------SLPCYKVT 562 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----------~l~~~~v~ 562 (1466)
++..++++++.+|+++|++|.|||++++|+.|..+++.++||||||+|+. +|++...|... .|..+++.
T Consensus 23 ~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l-~G~l~~~P~~~~~~~~~~~~~~L~~~~~~ 101 (118)
T cd03541 23 GNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGL-DGSLTKATQATGIQNFNPKELGLVPLKVA 101 (118)
T ss_pred CCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcC-CCeEEeCCCcccccCCCHHHCCCceEeEE
Confidence 44566666667899999999999999999999999889999999999999 59999887643 35566665
Q ss_pred EEcCeEEE
Q psy2951 563 IQNDDSVV 570 (1466)
Q Consensus 563 i~~~~~~~ 570 (1466)
+..+-+|+
T Consensus 102 ~~~g~vfv 109 (118)
T cd03541 102 EWGPFVLI 109 (118)
T ss_pred EECCEEEE
Confidence 54444444
No 238
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.17 E-value=2.2e-10 Score=102.05 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=73.9
Q ss_pred cEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc
Q psy2951 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 263 (1466)
Q Consensus 184 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~ 263 (1466)
+++|||||++|+|+|..|+++|.+||++++.+.++ +.+++++.+.+.+.+++.||++++++.+++++.++++ +. |.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 58999999999999999999999999999999888 8899999999999999999999999999999987755 66 777
Q ss_pred CCC
Q psy2951 264 DNG 266 (1466)
Q Consensus 264 ~~g 266 (1466)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 765
No 239
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.16 E-value=3.1e-11 Score=112.48 Aligned_cols=68 Identities=35% Similarity=0.699 Sum_probs=59.3
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccce--eecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcC
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g--~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~ 1037 (1466)
+++..+|+++|+.+.|||.+++|..| ...++.+.||||||.|++.||++...|+..+|+.|+++++.|
T Consensus 28 ~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 28 LVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVGGPAPRPLPLYPVKVEGD 97 (97)
T ss_dssp EEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEESTTCSBSTEEEEEEETT
T ss_pred EEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEecCCCCCCcCCCCeEEeCC
Confidence 34446889999999999999999999 455689999999999999999999999999999999999543
No 240
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.14 E-value=1.5e-10 Score=115.55 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=63.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCC-----------------C
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM-----------------D 554 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------------~ 554 (1466)
++..++++++.+|+++|++|.|||++++|+.|.. .++.++||||+|+|+++ |++...|.. .
T Consensus 47 ~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~-G~~~~ip~~~~~~~~~~~~~~~~~~~~ 125 (150)
T cd03545 47 GDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDLK-GNLKGVPFRRGLKGQGGMPKDFDMKQH 125 (150)
T ss_pred CCceEEEEECCCCCEEEEcccCcCCCCEecccccCCCCEEECCCCCCEECCC-CCEEECccccccccccccccCcCHHHC
Confidence 4344555555689999999999999999998753 46799999999999996 999987642 3
Q ss_pred CCCeEEEEEEcCeEEEEEc
Q psy2951 555 SLPCYKVTIQNDDSVVVQA 573 (1466)
Q Consensus 555 ~l~~~~v~i~~~~~~~~~~ 573 (1466)
+|+.+++.+..+-+|+...
T Consensus 126 ~L~~~~v~~~~g~ifv~l~ 144 (150)
T cd03545 126 GLEKLRVETVGGLVFASFS 144 (150)
T ss_pred CCcceeEeEECCEEEEEeC
Confidence 5889999887777766543
No 241
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.14 E-value=1.3e-10 Score=112.47 Aligned_cols=77 Identities=16% Similarity=0.330 Sum_probs=58.4
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCCC------------CCCe
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMD------------SLPC 558 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~~------------~l~~ 558 (1466)
.++..++++++.+|+++|++|.|||++++|++|... +..++||||||+|+. +|+|...|... .|+.
T Consensus 29 ~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~~l~~ 107 (128)
T cd03472 29 MGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDT-AGNLVNVPFEKEAFCDGLDKADWGPLQ 107 (128)
T ss_pred ECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECC-CcCEEeccCcccccccCCCHHHCCCcc
Confidence 344445555557999999999999999999988753 358999999999995 69999888743 2566
Q ss_pred EEEEEEcCeEE
Q psy2951 559 YKVTIQNDDSV 569 (1466)
Q Consensus 559 ~~v~i~~~~~~ 569 (1466)
..+.+..+-+|
T Consensus 108 ~~v~~~~g~vf 118 (128)
T cd03472 108 ARVETYKGLIF 118 (128)
T ss_pred eeEeEECCEEE
Confidence 66665444343
No 242
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.13 E-value=6.7e-11 Score=113.15 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=60.5
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecC-CCccccCCCCCCCCeEEEEEEc-CCEEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQN-DDSVVVQ 1043 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~-~g~~~~~p~~~~l~~~~v~~~~-~~~~~~~ 1043 (1466)
+++++|+++.|||.+++|.++. +++.+.||||+|+||++ +|.++..|+..+|+.|++++++ ++.+++.
T Consensus 45 ~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 45 DNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPARGGQMVSGQATQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCCCCCeEEcCCCCCCCCeEEEEEECCCCEEEEE
Confidence 5789999999999999999877 78999999999999997 6799988999999999999953 7777663
No 243
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.12 E-value=6.2e-11 Score=113.05 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=69.3
Q ss_pred EEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCC-------------CC
Q psy2951 960 AILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM-------------DS 1026 (1466)
Q Consensus 960 g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~-------------~~ 1026 (1466)
.+.+.|.+.++.+..+|+++|+.+.|||.+++|..|.+.++.+.||+|||+|| .+|++...|.. ..
T Consensus 19 ~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd-~~G~~~~iP~~~~~~~~~~~~p~~~~ 97 (123)
T cd03537 19 ELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYD-EQGQCVHIPGHSTAVRRLEPVPRGAR 97 (123)
T ss_pred EEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEEC-CCCCEEECCCCcccccccccCCcccc
Confidence 33445555555666678999999999999999999999999999999999999 99998866531 34
Q ss_pred CCeEEEEEEcCCEEEEEcc
Q psy2951 1027 LPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1027 l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++.|++++ .+|.+++...
T Consensus 98 ~~~~pv~e-~~G~Vwv~~g 115 (123)
T cd03537 98 QPTLVTAE-RYGYVWVWYG 115 (123)
T ss_pred cccEeEEE-ECCEEEEEcC
Confidence 88999998 8888888754
No 244
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.12 E-value=2.1e-10 Score=111.35 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=61.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCC------------------
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM------------------ 553 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~------------------ 553 (1466)
++..++++++.+|+++|++|.|||++.+|+.|... .+.++||||||+|+.+ |++...|..
T Consensus 22 ~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~-G~l~~~p~~~~~~~~~~~~~~~~~~~~ 100 (129)
T cd03539 22 GERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLK-GDLQGVPFRRGVKKDGKVNGGMPKDFK 100 (129)
T ss_pred CCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCC-CCEeeccccccccccccccccccCCcC
Confidence 33444444557899999999999999999988654 4589999999999997 999887642
Q ss_pred ---CCCCeEEEEEEcCeEEEEE
Q psy2951 554 ---DSLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 554 ---~~l~~~~v~i~~~~~~~~~ 572 (1466)
..|+.+++.+..+-+|++.
T Consensus 101 ~~~~~L~~~~v~~~~g~Ifv~~ 122 (129)
T cd03539 101 TKDHGLTKLKVATRGGVVFASF 122 (129)
T ss_pred hHHCCCceeeEeEECCEEEEEe
Confidence 2477888887666666544
No 245
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.11 E-value=5.9e-11 Score=115.19 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=66.1
Q ss_pred CchhhhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCCC----------CCCeEEEEE
Q psy2951 966 MDPLAAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMD----------SLPCYKVTI 1034 (1466)
Q Consensus 966 ~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~~----------~l~~~~v~~ 1034 (1466)
....+.+..+|+++|+.+.|||.+++|..|.+ .++.+.||||||+|++. |+++..|+.. .|++|++++
T Consensus 24 ~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~-G~~~~~P~~~~~~~~~~~~~~L~~~~v~~ 102 (118)
T cd03469 24 EPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLD-GKLVGVPREEGFPGFDKEKLGLRTVPVEE 102 (118)
T ss_pred ccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCC-CcEEeCCcccccCCCCHHHCCCeEEEEEE
Confidence 33334444588999999999999999999998 88999999999999988 9999888754 399999998
Q ss_pred EcCCEEEEEcc
Q psy2951 1035 QNDDSVVVQAR 1045 (1466)
Q Consensus 1035 ~~~~~~~~~~~ 1045 (1466)
.++.+++...
T Consensus 103 -~~g~v~v~~~ 112 (118)
T cd03469 103 -WGGLIFVNLD 112 (118)
T ss_pred -ECCEEEEEcC
Confidence 7788888654
No 246
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.10 E-value=8.8e-11 Score=115.58 Aligned_cols=86 Identities=21% Similarity=0.411 Sum_probs=67.6
Q ss_pred EEEEEeecCchhhhhhh-hhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCC-----------
Q psy2951 958 VLAILTVGMDPLAAQFA-ERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM----------- 1024 (1466)
Q Consensus 958 i~g~~~~g~~~~~~~~~-~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~----------- 1024 (1466)
...+.+.+....+++.. +|+++|+.+.|||.+++|..|.+. ++.+.||||||+|| .+|++...|..
T Consensus 32 ~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~g~~~~~~~ 110 (138)
T cd03480 32 PTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFD-GSGSCQRIPQAAEGGKAHTSPR 110 (138)
T ss_pred cEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEEC-CCCCEEECCCCccccccCCCcc
Confidence 33334444444445543 889999999999999999999885 57999999999999 79999987643
Q ss_pred CCCCeEEEEEEcCCEEEEEcc
Q psy2951 1025 DSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1025 ~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
..|++|++++ .++.+++...
T Consensus 111 ~~l~~ypv~v-~~g~V~V~~~ 130 (138)
T cd03480 111 ACVASLPTAV-RQGLLFVWPG 130 (138)
T ss_pred cccceEeEEE-ECCEEEEecC
Confidence 4589999998 7888888654
No 247
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.10 E-value=2.6e-09 Score=118.59 Aligned_cols=108 Identities=21% Similarity=0.316 Sum_probs=77.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------CCCCcc--------------------chhc---
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YDRVKL--------------------SKQL--- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-------~~~~~~--------------------~~~~--- 643 (1466)
..++|+|||||||||.||..++++|++ |+++|+.+.++ ..++.+ ...+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~--V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRR--VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCE--EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 368999999999999999999999998 77777764221 000000 0000
Q ss_pred ---------------------c------cCcccccccCHhHhhhCCcEEEEceEEEEecccc--ccEEEccCCCEEecCE
Q psy2951 644 ---------------------D------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTK 694 (1466)
Q Consensus 644 ---------------------~------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~~v~~~~~~~~~~d~ 694 (1466)
+ .....+++.+...+++.||+++++++|.++ +.. ...+.+.++.++.+|.
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v-~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSV-EKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeE-EecCceEEEEcCCCCEEEccE
Confidence 0 122334445556678899999999999999 544 5778888888999999
Q ss_pred EEEcCC--CCCC
Q psy2951 695 IYLATG--SSPR 704 (1466)
Q Consensus 695 lviAtG--~~~~ 704 (1466)
+||||| |.|.
T Consensus 159 lilAtGG~S~P~ 170 (408)
T COG2081 159 LILATGGKSWPK 170 (408)
T ss_pred EEEecCCcCCCC
Confidence 999999 5553
No 248
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.08 E-value=1.2e-10 Score=111.38 Aligned_cols=68 Identities=21% Similarity=0.426 Sum_probs=60.5
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCC-CccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~-g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
.+|++||+++.|||.+++|.++. +++.+.||||+++|+++| |++...|+..+|++|++++++++.++.
T Consensus 47 ~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 47 PDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred cCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCCCCCcEECCCCCCCCCeeEEEEECCCeEEE
Confidence 47899999999999999999875 679999999999999997 599988999999999999966666653
No 249
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.08 E-value=1e-10 Score=105.01 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=48.3
Q ss_pred hhhhhhhhcCCCCCCCccccc--eeecCCEEEcCCCCceeecCCCccccCCCCCC
Q psy2951 974 AERNIYAVGTKCSHYGAPLVK--GSLGDGRVRCPWHGACFNIATGDIEDFPGMDS 1026 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~--g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~ 1026 (1466)
.+|++||+.+.|||.+.+|.. |.++++.+.||||+|.||++||++...|+..+
T Consensus 38 ~~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~~~ 92 (107)
T cd03473 38 SKSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDSFC 92 (107)
T ss_pred ECCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCcccc
Confidence 478999999999999999999 56899999999999999999999998887654
No 250
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.08 E-value=1.1e-10 Score=108.72 Aligned_cols=67 Identities=33% Similarity=0.717 Sum_probs=60.7
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEc
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~ 1036 (1466)
+.+..+++++|+.+.|||.+++|..+...+..+.||||+|.|++++|+++..|+..+|+.|++++..
T Consensus 27 v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~~~~ 93 (98)
T cd03467 27 VVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEG 93 (98)
T ss_pred EEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCCCCCcCEEEEEEeC
Confidence 4444567999999999999999999988899999999999999999999999988899999999854
No 251
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.06 E-value=1.8e-10 Score=114.68 Aligned_cols=86 Identities=24% Similarity=0.406 Sum_probs=69.1
Q ss_pred EEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC---------CCC
Q psy2951 958 VLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD---------SLP 1028 (1466)
Q Consensus 958 i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~---------~l~ 1028 (1466)
...+.+.+....+.+..+|+++|+.+.|||.|++|..|.+.++.+.||||||+|+. +|++...|+.. .|+
T Consensus 37 ~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~-~G~~~~~P~~~~~~~~~~~~~l~ 115 (144)
T cd03479 37 PVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDV-DGQCLEMPSEPPDSQLKQKVRQP 115 (144)
T ss_pred EEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCCCcEECC-CCCEEECCCCccccCCccccCcc
Confidence 33333344444445556889999999999999999999999999999999999995 99999877543 489
Q ss_pred eEEEEEEcCCEEEEEcc
Q psy2951 1029 CYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1029 ~~~v~~~~~~~~~~~~~ 1045 (1466)
+|++++ .++.+++...
T Consensus 116 ~~~v~~-~~G~I~V~~~ 131 (144)
T cd03479 116 AYPVRE-RGGLVWAYMG 131 (144)
T ss_pred eEeEEE-ECCEEEEECC
Confidence 999998 8888888654
No 252
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.05 E-value=2.3e-10 Score=112.82 Aligned_cols=82 Identities=24% Similarity=0.491 Sum_probs=64.8
Q ss_pred EeecCchhhhhhhhhhhhhhcCCCCCCCcccccee--ecCCEEEcCCCCceeecCCCccccC---CC-----CCCCCeEE
Q psy2951 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDF---PG-----MDSLPCYK 1031 (1466)
Q Consensus 962 ~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~--~~~~~~~cp~h~~~f~~~~g~~~~~---p~-----~~~l~~~~ 1031 (1466)
.+.+...++.+ .+|+++|+.+.|||.+++|..|. ..++.+.||||||+|++++|++... |. ...|++|+
T Consensus 33 ~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~~yp 111 (136)
T cd03548 33 QLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYP 111 (136)
T ss_pred EECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCccEEEcccCCCccccccCCCceEe
Confidence 33333333334 58899999999999999999885 5678999999999999999999853 22 34699999
Q ss_pred EEEEcCCEEEEEcc
Q psy2951 1032 VTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~ 1045 (1466)
|++ .++.+++...
T Consensus 112 v~~-~~g~V~v~~~ 124 (136)
T cd03548 112 VEE-AKGMIFVFVG 124 (136)
T ss_pred EEE-ECCEEEEEeC
Confidence 998 7888888754
No 253
>PLN02518 pheophorbide a oxygenase
Probab=99.03 E-value=5.6e-10 Score=133.38 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=68.5
Q ss_pred CCCCEEEEEe-eCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCC--------------CCC
Q psy2951 493 SSTPKTLAQS-TTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM--------------DSL 556 (1466)
Q Consensus 493 ~~~~~~~~~~-~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~--------------~~l 556 (1466)
.|..++++++ .+|+++|++|.|||++++|+.|.++ ++.|+||||||+|+.+ |+|...|.. .|+
T Consensus 111 lG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~-G~c~~IP~~~~~~~~~~~~~~~~a~v 189 (539)
T PLN02518 111 LGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCTRIPQAAPEGPEARAVKSPRACA 189 (539)
T ss_pred CCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC-CCeeecccccccccccccccCccccc
Confidence 3466777776 7899999999999999999999995 6799999999999996 999876642 257
Q ss_pred CeEEEEEEcCeEEEEEccc
Q psy2951 557 PCYKVTIQNDDSVVVQARK 575 (1466)
Q Consensus 557 ~~~~v~i~~~~~~~~~~~~ 575 (1466)
+.|++++.+|-+|+....+
T Consensus 190 ~sypv~e~~GlIwV~~~~~ 208 (539)
T PLN02518 190 IKFPTMVSQGLLFVWPDEN 208 (539)
T ss_pred ceEeEEEECCEEEEEeCCc
Confidence 8999999888888766543
No 254
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.03 E-value=3.5e-10 Score=106.56 Aligned_cols=69 Identities=29% Similarity=0.597 Sum_probs=59.2
Q ss_pred hhhhhh--hhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 973 FAERNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 973 ~~~g~~--~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
..+|++ ||+++.|||.|++|..+.. ++.+.||||+++|+ .+|+++..|+..+|+.|++++ +++.+++..
T Consensus 41 ~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd-~tG~~~~gPa~~~L~~y~V~v-edg~I~V~~ 111 (126)
T cd03471 41 EEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYD-ATGKVVRGPAPLSLALVHATV-DDDKVVLSP 111 (126)
T ss_pred eCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEEC-CCCCEecCCCCCCCceEeEEE-ECCEEEEEE
Confidence 346655 8999999999999887643 57999999999999 999999999999999999999 667887753
No 255
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.01 E-value=3.6e-10 Score=108.50 Aligned_cols=67 Identities=27% Similarity=0.522 Sum_probs=52.0
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCCCCCCeEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v 561 (1466)
++..+++++..+|+++|++|.|||+|++|+.|... +..+.||||+|+|+ .+|++...|. .++..|++
T Consensus 22 ~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd-~~G~~~~~p~-~~~~~y~~ 89 (123)
T cd03542 22 GRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFS-NTGKLLKVKD-PKTAGYPE 89 (123)
T ss_pred CCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEec-CCccEEECCc-ccccCcCc
Confidence 33445555556899999999999999999988653 45899999999999 7899998774 23344444
No 256
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.01 E-value=2.6e-10 Score=102.83 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~ 1034 (1466)
++..+|+++|+.+.|||.+++|..|.. +..+.||||+|.|+ .+|+++..|+..+|+.|+++-
T Consensus 26 ~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd-~~G~~~~~Pa~~~l~~y~v~~ 87 (91)
T cd03477 26 YRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFS-YDGEVIEGPAVSGLKPADDAP 87 (91)
T ss_pred EECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEEC-CCCcEeeCCCCCCCCeeEeec
Confidence 334578999999999999999998764 57999999999999 899999999999999999975
No 257
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.99 E-value=1.3e-09 Score=107.38 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=58.7
Q ss_pred CCeEEEEeCCCCCCCcccCC---------------ceecCCEEEccCCCceEECCCC-eeecCCCCCCCCeEEEEEEc--
Q psy2951 504 TSNIYAVGTKCSHYGAPLVK---------------GSLGDGRVRCPWHGACFNIATG-DIEDFPGMDSLPCYKVTIQN-- 565 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~---------------g~~~~~~~~Cp~H~~~f~~~~G-~~~~~p~~~~l~~~~v~i~~-- 565 (1466)
+++++|+++.|||+||+|.+ |..+++.|.||||+|+||+++| .+..+|+..+|..+.++.++
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~~~ 153 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPAVILEYDSST 153 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeCCC
Confidence 78999999999999998753 4455779999999999999877 57777999999999999874
Q ss_pred CeEEEEEcc
Q psy2951 566 DDSVVVQAR 574 (1466)
Q Consensus 566 ~~~~~~~~~ 574 (1466)
+.++.+..+
T Consensus 154 d~iyAvG~~ 162 (171)
T cd03475 154 DDLYAVGTL 162 (171)
T ss_pred CcEEEEecc
Confidence 556655443
No 258
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=5.2e-08 Score=111.47 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=99.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCC-CcEEEEcCCCCC----CCCCCCCchh------------------h----ccC-
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFT-GKLYFITDENFL----PYDRVKLSKQ------------------L----DIK- 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~-~~i~li~~~~~~----~~~~~~l~~~------------------~----~~~- 1117 (1466)
+++|+|||+|++|+.+|.+|.+.-.. ..|+|||+.+.+ +|....-... + ...
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 46899999999999999999876543 449999998653 3432210000 0 000
Q ss_pred ----------cccccccCh----h--------hhccCC---cEEEcCCeEEEeecC---CCCeEEecCCcEEecCeEEEe
Q psy2951 1118 ----------ADSILLRTE----E--------FYKDND---IHVIKGKKIISDSEL---NEKKIKLQDGTSIDFTKIYLA 1169 (1466)
Q Consensus 1118 ----------~~~~~~~~~----~--------~~~~~~---v~~~~~~~v~~i~d~---~~~~v~~~~g~~~~yd~lvlA 1169 (1466)
.+...+.+. + +.+... +.++... ++++... ....+...+|....+|-+|+|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~-a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREE-ATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeee-eecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 000111111 0 111111 4444333 4444122 234577779999999999999
Q ss_pred cCCCCCcCCCCCCCC---cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCC--eEEEEcCCC
Q psy2951 1170 TGSSPRTISQADGVN---KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGA 1238 (1466)
Q Consensus 1170 tG~~~~~~~~~~g~~---~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~vv~~~~ 1238 (1466)
||..+-.++.- ..+ ..-+..+...+.. ...++...+|+|+|+|+...+....|+++|. +||+++|..
T Consensus 160 tgh~~~~~~~~-~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 160 TGHSAPPADPA-ARDLKGSPRLIADPYPANA-LDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred ccCCCCCcchh-hhccCCCcceeccccCCcc-cccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 99855443321 111 1112222223322 2334446679999999999999999999875 799998764
No 259
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=98.95 E-value=2.4e-09 Score=106.47 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=48.0
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCce-e-cCCEEEccCCCceEECCCCeeecCCCC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS-L-GDGRVRCPWHGACFNIATGDIEDFPGM 553 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~-~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~ 553 (1466)
++..++++++.+|+++|++|.|||+|++|..+. . ++..++||||||+|+. +|++...|..
T Consensus 44 ~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~-~G~~~~~p~~ 105 (146)
T cd03538 44 GDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKT-DGSLLAIPLK 105 (146)
T ss_pred CCeeEEEEECCCCCEEEEeccCcCCCCEeecccccccCCEEECCCCCCEECC-CCCEEECCch
Confidence 445555555578999999999999999996543 3 2558999999999997 8999988753
No 260
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=98.86 E-value=2.1e-09 Score=119.09 Aligned_cols=89 Identities=22% Similarity=0.396 Sum_probs=74.7
Q ss_pred CCeEEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCC------CC
Q psy2951 955 ADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDS------LP 1028 (1466)
Q Consensus 955 ~~~i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~------l~ 1028 (1466)
.+....+.+.|...++++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+||. +|+|...|.... ++
T Consensus 85 ~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~-~G~C~~iP~~~~~~~~~~v~ 163 (394)
T PLN00095 85 EDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYET-GGECAKMPSCKKFLKGVFAD 163 (394)
T ss_pred CCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECC-CCCEeeCCCccccccccccc
Confidence 45556666667666667767899999999999999999999999999999999999995 999998886532 57
Q ss_pred eEEEEEEcCCEEEEEcc
Q psy2951 1029 CYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1029 ~~~v~~~~~~~~~~~~~ 1045 (1466)
.|++++ .+|.++++..
T Consensus 164 tYPV~e-~dGlVwVw~G 179 (394)
T PLN00095 164 AAPVIE-RDGFIFLWAG 179 (394)
T ss_pred eEEEEE-ECCEEEEEeC
Confidence 999998 7888888754
No 261
>PLN02281 chlorophyllide a oxygenase
Probab=98.86 E-value=2.3e-09 Score=124.91 Aligned_cols=84 Identities=18% Similarity=0.385 Sum_probs=70.3
Q ss_pred EEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC----CCCeEEEEEE
Q psy2951 960 AILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----SLPCYKVTIQ 1035 (1466)
Q Consensus 960 g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~----~l~~~~v~~~ 1035 (1466)
.+.+.|...++++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|+ .+|+|...|... .++.|++++
T Consensus 237 ~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD-~dG~cv~iP~~~~~~~~l~sYPV~e- 314 (536)
T PLN02281 237 PIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYS-TDGECKKMPSTKLLKVKIKSLPCLE- 314 (536)
T ss_pred EEEECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEEC-CCCCEeeCCCCccccCCcceEeEEE-
Confidence 33444444445566688999999999999999999999999999999999999 899999988753 488999998
Q ss_pred cCCEEEEEcc
Q psy2951 1036 NDDSVVVQAR 1045 (1466)
Q Consensus 1036 ~~~~~~~~~~ 1045 (1466)
.++.+|++..
T Consensus 315 ~~GlVwV~lg 324 (536)
T PLN02281 315 QEGMIWIWPG 324 (536)
T ss_pred ECCEEEEEeC
Confidence 7888888754
No 262
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.81 E-value=2.8e-07 Score=106.94 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=100.5
Q ss_pred HHHHHHhcC-CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecC
Q psy2951 1219 EAAAFCASK-VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPAD 1295 (1466)
Q Consensus 1219 e~a~~l~~~-g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D 1295 (1466)
++...|.+. |+.|.-+-..| +...+..+.+.|.+.++++|++++.+.+|.++. .+++++..|...++ .++.+|
T Consensus 237 ~~~~~L~~~~g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~-~~~~~v~~V~t~~g~~~~l~AD 312 (419)
T TIGR03378 237 ELLRELEQATGLTLCELPTMP---PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAE-FEGNRVTRIHTRNHRDIPLRAD 312 (419)
T ss_pred HHHHHHHHHHCCCEEeCCCCC---CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEE-eeCCeEEEEEecCCccceEECC
Confidence 444445443 66666654332 235678899999999999999999999999987 45566777776776 489999
Q ss_pred EEEEeeccccCcccccc--------CCceee-------------------CCCeEEeCCCccc-----cCCCEEEecccc
Q psy2951 1296 LVIVGIGTVLNTNYLDG--------KGVELN-------------------GQKAVVVNEYLET-----NVPGVYAGGDIA 1343 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~--------~gl~~~-------------------~~G~i~vd~~~~t-----~~~~v~a~GD~a 1343 (1466)
.+|+|+|.--...|++. .+|.+. ..=+|.+|+++|. ..+|+||+|-+.
T Consensus 313 ~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL 392 (419)
T TIGR03378 313 HFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVL 392 (419)
T ss_pred EEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhh
Confidence 99999997733333222 222220 0114889999984 289999999988
Q ss_pred cCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1344 ~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
...++...|- .--.|+..|-.||+.|+
T Consensus 393 ~G~d~~~~gc-----G~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 393 GGYDPIFEGC-----GSGVAVSTALHAAEQII 419 (419)
T ss_pred cCCChHhcCC-----CchhHHHHHHHHHHhhC
Confidence 7665432110 01368888888888764
No 263
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=98.80 E-value=6.2e-09 Score=99.74 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=60.0
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
.+++++|+.+.|||.++.+..+...++.+.|||||+.||+ +|+....|+..+|+.|+++++.++.+++
T Consensus 58 ~~~~~~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl-~G~~~~gPa~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 58 GKPEWLVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDA-SGRIRKGPAPLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CCCcEEEEeCcCCCCCCeeccccCCCCEEEecCcCCEECC-CCeEecCCCCCCCCeeeEEEecCCEEEe
Confidence 3679999999999999988877667899999999999997 5999999999999999999967676654
No 264
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.78 E-value=4.6e-08 Score=108.89 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=60.7
Q ss_pred HHHHHhhCCCEEEEEeecCccccc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEE
Q psy2951 197 AAAFCASKVKSVTVVGRGAVPFQE-SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275 (1466)
Q Consensus 197 ~A~~l~~~g~~Vtlv~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi 275 (1466)
+-..+.++|.+...-+. -+.|+. .-...+.+.+.+.+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|
T Consensus 84 ~i~~~e~~Gi~~~e~~~-Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 84 FIDWVEGLGIALKEEDL-GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHhcCCeeEEccC-ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEE
Confidence 33445556654433322 234443 3347888999999999999999999999998864 3456888888899999999
Q ss_pred Eeeccc
Q psy2951 276 VGIGTV 281 (1466)
Q Consensus 276 ~a~G~~ 281 (1466)
+|+|-.
T Consensus 161 lAtGG~ 166 (408)
T COG2081 161 LATGGK 166 (408)
T ss_pred EecCCc
Confidence 999944
No 265
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=98.78 E-value=9.3e-09 Score=121.92 Aligned_cols=85 Identities=25% Similarity=0.524 Sum_probs=73.7
Q ss_pred cCCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCC------CCC----CCCeE
Q psy2951 491 PASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFP------GMD----SLPCY 559 (1466)
Q Consensus 491 ~~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p------~~~----~l~~~ 559 (1466)
...++.++++++.+|+++|+.|.|||+|++|+.|.+.+ +.|+||||||+|+.+ |+|...| ... ++..+
T Consensus 46 ~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~-G~~~~ip~~~~~~~~~~~~~~l~~~ 124 (367)
T COG4638 46 RIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLD-GRLRGVPARGYPLDFDKSEHGLKRY 124 (367)
T ss_pred EEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCCCceEecCCCceEECCC-CcEecCCccccCCCCCHhhCCcccc
Confidence 34458888898999999999999999999999999998 899999999999997 9999887 222 57889
Q ss_pred EEEEEcCeEEEEEcccc
Q psy2951 560 KVTIQNDDSVVVQARKD 576 (1466)
Q Consensus 560 ~v~i~~~~~~~~~~~~~ 576 (1466)
++.+..|-+|++..++.
T Consensus 125 ~~~~~~G~Iwi~~~~~~ 141 (367)
T COG4638 125 PVEERYGFIWIWLGDPP 141 (367)
T ss_pred ceEEEccEEEEecCCCc
Confidence 99998888888776665
No 266
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=98.76 E-value=8e-09 Score=99.87 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=59.6
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCCCCC------------CCCeEEEEEEcC
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGMD------------SLPCYKVTIQND 1037 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p~~~------------~l~~~~v~~~~~ 1037 (1466)
++..+|+++|+.+.|||.+++|..|...+ ..+.||||||+|+ .+|++...|... .|+.|++.....
T Consensus 31 ~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd-~tG~~~~~p~~~~~~~~~~~~~~~~L~~~~~~e~~~ 109 (123)
T cd03535 31 CRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYR-NTGRLVGVPAQQEAYGGGFDKSQWGLRPAPNLDSYN 109 (123)
T ss_pred EECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEEC-CCcCEeeCCCcccccccCcCHHHCCCccceeEEEEC
Confidence 33357899999999999999999988764 6899999999999 899999876422 378887544368
Q ss_pred CEEEEEcc
Q psy2951 1038 DSVVVQAR 1045 (1466)
Q Consensus 1038 ~~~~~~~~ 1045 (1466)
+.++++..
T Consensus 110 g~vfv~l~ 117 (123)
T cd03535 110 GLIFGSLD 117 (123)
T ss_pred CEEEEEeC
Confidence 88888654
No 267
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=98.76 E-value=9e-09 Score=105.30 Aligned_cols=68 Identities=31% Similarity=0.584 Sum_probs=59.5
Q ss_pred hhhhh--hhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 974 AERNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 974 ~~g~~--~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
.+|++ ||+++.|||.++++..+.. ++.+.|||||++|| .+|++...|+..+|+.|++++ +++.+++..
T Consensus 94 ~~g~~~~~a~~~~CtH~gc~l~~~~~-~~~~~CP~Hgs~Fd-~tG~~~~gPa~~~L~~y~v~v-~~g~v~v~~ 163 (178)
T PRK13474 94 EDGTIASYGINAVCTHLGCVVPWNSG-ENKFQCPCHGSQYD-ATGKVVRGPAPLSLALVHVTV-EDDKVLFSP 163 (178)
T ss_pred CCCEEEEEEecCCCCCCCCccccccC-CCEEEecCcCCEEC-CCCCCccCCCCCCCCeEeEEE-ECCEEEEEE
Confidence 46777 7889999999999988764 47999999999999 999999999999999999999 577777754
No 268
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=98.76 E-value=1e-08 Score=97.48 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=60.2
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCC----------CCeEEEEEEcCCE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDS----------LPCYKVTIQNDDS 1039 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~----------l~~~~v~~~~~~~ 1039 (1466)
+.+..+|+++|+.+.|||.+++|..|...++.+.||||||+|++ +|++...|.... |..+.+.+ -.+.
T Consensus 29 v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l-~G~l~~~P~~~~~~~~~~~~~~L~~~~~~~-~~g~ 106 (118)
T cd03541 29 VCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGL-DGSLTKATQATGIQNFNPKELGLVPLKVAE-WGPF 106 (118)
T ss_pred EEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcC-CCeEEeCCCcccccCCCHHHCCCceEeEEE-ECCE
Confidence 34445789999999999999999999999999999999999996 899998776543 56666665 6777
Q ss_pred EEEEcc
Q psy2951 1040 VVVQAR 1045 (1466)
Q Consensus 1040 ~~~~~~ 1045 (1466)
++++..
T Consensus 107 vfv~~~ 112 (118)
T cd03541 107 VLISVD 112 (118)
T ss_pred EEEEeC
Confidence 777643
No 269
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=8.1e-07 Score=101.91 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=98.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCC-ccEEEEcCCCCCC----CCCCccchhcc-------cC----cccccc------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFT-GKLYFITDENFLP----YDRVKLSKQLD-------IK----ADSILL------ 652 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~-~~v~~~~~~~~~~----~~~~~~~~~~~-------~~----~~~~~~------ 652 (1466)
+++|+|||||++|+..|.+|.+.-.. ..|.++|+...++ |........+. .. ++++..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 47999999999999999999986443 3388888875433 21111000000 00 000100
Q ss_pred ----------------------------cCHhHhhhCC---cEEEEceEEEEeccc---cccEEEccCCCEEecCEEEEc
Q psy2951 653 ----------------------------RTEEFYKDND---IHVIKGKKIISDSEL---NEKKIKLQDGTSIDFTKIYLA 698 (1466)
Q Consensus 653 ----------------------------~~~~~~~~~g---v~~~~~~~v~~i~~~---~~~~v~~~~~~~~~~d~lviA 698 (1466)
++..++++.. +.++... ++++... ....+...+|....+|-+|+|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~-a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREE-ATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeee-eecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 0111122222 5555544 4444222 345677778889999999999
Q ss_pred CCCCCCcCCCCCCCC---cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccC--CeEEEEeecC
Q psy2951 699 TGSSPRTISQADGVN---KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV--KSVTVVGRGA 767 (1466)
Q Consensus 699 tG~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~ 767 (1466)
||..+..++.. ..+ ...+..+......+. .+....+|+|+|+|.+.++....|+++| .++|++.|+.
T Consensus 160 tgh~~~~~~~~-~~~~~~~~~~ia~~~~~~~ld-~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 160 TGHSAPPADPA-ARDLKGSPRLIADPYPANALD-GVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred ccCCCCCcchh-hhccCCCcceeccccCCcccc-cccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 99654433321 111 111111222221122 2334667999999999999999999986 4689888875
No 270
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=98.73 E-value=2.7e-08 Score=101.40 Aligned_cols=67 Identities=24% Similarity=0.421 Sum_probs=56.0
Q ss_pred eCCeEEEEeCCCCCCCcccCC-ceec-CCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVK-GSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~-g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.+++++|+++.|||+||.+.+ +... .+.+.|||||++||+. |++..+|+..+|..|+.++.++..+.
T Consensus 104 ~~~~~~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~-G~~~~gpa~~~L~~~~~~~~~~~~~~ 172 (174)
T TIGR01416 104 GKPEWLVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDTA-GRVRKGPAPLNLPVPPYKFLSDTTIL 172 (174)
T ss_pred cCCcEEEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECCC-CcEecCCCCCCCCCCCEEEcCCCEEE
Confidence 368999999999999987754 3333 4589999999999996 99999999999999999987776543
No 271
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=98.71 E-value=1.5e-08 Score=101.11 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=60.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC-----------------CCCCeEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM-----------------DSLPCYKV 1032 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~-----------------~~l~~~~v 1032 (1466)
.+..+|+++|+.+.|||.+++|..|.. .++.+.||||||+|++ +|++...|.. ..|+.|++
T Consensus 54 ~r~~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl-~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v 132 (150)
T cd03545 54 TRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDL-KGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRV 132 (150)
T ss_pred EECCCCCEEEEcccCcCCCCEecccccCCCCEEECCCCCCEECC-CCCEEECccccccccccccccCcCHHHCCCcceeE
Confidence 344578999999999999999998754 4679999999999998 5999987642 24899999
Q ss_pred EEEcCCEEEEEcch
Q psy2951 1033 TIQNDDSVVVQARK 1046 (1466)
Q Consensus 1033 ~~~~~~~~~~~~~~ 1046 (1466)
.+ .++.++++...
T Consensus 133 ~~-~~g~ifv~l~~ 145 (150)
T cd03545 133 ET-VGGLVFASFSD 145 (150)
T ss_pred eE-ECCEEEEEeCC
Confidence 98 78889887543
No 272
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=98.70 E-value=1.7e-08 Score=97.56 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=60.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCCCC-------------CCCCeEEEEEEc
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM-------------DSLPCYKVTIQN 1036 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p~~-------------~~l~~~~v~~~~ 1036 (1466)
++..+|+++|+.+.|||.+++|..+...+ ..+.||||||+|+ .+|++...|.. ..|+.|+|++ .
T Consensus 29 ~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd-~~G~~~~~p~~~~~~~~~~~~~~~~~L~~~~v~~-~ 106 (123)
T cd03536 29 ARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFR-PNGDFIGAPVEKECMHGKMRTKAELGLHKARVTL-Y 106 (123)
T ss_pred EECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEEC-CCCcEEECCccccccccCCCCHHHCCCcceeEEE-E
Confidence 34457899999999999999999876643 5689999999999 79988876642 3489999998 8
Q ss_pred CCEEEEEcch
Q psy2951 1037 DDSVVVQARK 1046 (1466)
Q Consensus 1037 ~~~~~~~~~~ 1046 (1466)
++.++++...
T Consensus 107 ~g~Ifv~~~~ 116 (123)
T cd03536 107 GGLIFATWNI 116 (123)
T ss_pred CCEEEEEeCC
Confidence 8899887553
No 273
>PRK09897 hypothetical protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=114.36 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCC--------------------CchhhccC----
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVK--------------------LSKQLDIK---- 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~--------------------l~~~~~~~---- 1117 (1466)
|++|+|||||++|+++|.+|.+.+...+|+|||+.+.++ |.... +..+....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999998876556999999975432 33210 00111000
Q ss_pred ------------cccccccC------h-------hhhccCC--cEEEcCCeEEEeecCCCC--eEEecC-CcEEecCeEE
Q psy2951 1118 ------------ADSILLRT------E-------EFYKDND--IHVIKGKKIISDSELNEK--KIKLQD-GTSIDFTKIY 1167 (1466)
Q Consensus 1118 ------------~~~~~~~~------~-------~~~~~~~--v~~~~~~~v~~i~d~~~~--~v~~~~-g~~~~yd~lv 1167 (1466)
...+.-+. . +.+...| +.++.+++|+++ +.... .|.+.+ +..+.+|+||
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I-~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDL-QITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEE-EEeCCEEEEEECCCCeEEEcCEEE
Confidence 00010000 0 0112234 677788889999 66544 445444 4679999999
Q ss_pred EecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCC-------------------
Q psy2951 1168 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV------------------- 1228 (1466)
Q Consensus 1168 lAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g------------------- 1228 (1466)
+|||..+..+. . +.. .++.+.-+...+ .... +.+|+|+|.|+++++++..|..+|
T Consensus 160 LAtGh~~p~~~-~-~~~--~yi~~pw~~~~~-~~i~-~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg 233 (534)
T PRK09897 160 IATGHVWPDEE-E-ATR--TYFPSPWSGLME-AKVD-ACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNAS 233 (534)
T ss_pred ECCCCCCCCCC-h-hhc--cccCCCCcchhh-cCCC-CCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCC
Confidence 99998432111 1 111 122222222212 2233 689999999999999999887552
Q ss_pred --CeEEEEcCCCc
Q psy2951 1229 --KSVTVVGRGAV 1239 (1466)
Q Consensus 1229 --~~v~vv~~~~~ 1239 (1466)
.+++.++|...
T Consensus 234 ~~~~I~a~SRrGl 246 (534)
T PRK09897 234 EKLNITLMSRTGI 246 (534)
T ss_pred CCceEEEEeCCCC
Confidence 26888887754
No 274
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=98.68 E-value=2e-08 Score=97.46 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=59.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCCC------------CCCeEEEEEEcC
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMD------------SLPCYKVTIQND 1037 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~------------~l~~~~v~~~~~ 1037 (1466)
.+..+|+++|+.+.|||.+++|..|... +..+.||||||+|+ .+|++...|... .|+...+.+ -.
T Consensus 37 ~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd-~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~-~~ 114 (128)
T cd03472 37 VRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYD-TAGNLVNVPFEKEAFCDGLDKADWGPLQARVET-YK 114 (128)
T ss_pred EECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEEC-CCcCEEeccCcccccccCCCHHHCCCcceeEeE-EC
Confidence 4445789999999999999999988753 45899999999999 899999887642 267777776 57
Q ss_pred CEEEEEcch
Q psy2951 1038 DSVVVQARK 1046 (1466)
Q Consensus 1038 ~~~~~~~~~ 1046 (1466)
+.+++....
T Consensus 115 g~vfv~~~~ 123 (128)
T cd03472 115 GLIFANWDA 123 (128)
T ss_pred CEEEEEcCC
Confidence 788886543
No 275
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.66 E-value=1.7e-07 Score=99.97 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCe--eecCEEEEeeccccCcccccc---------
Q psy2951 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDG--------- 1312 (1466)
Q Consensus 1244 ~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~--i~~D~vv~a~G~~p~~~~~~~--------- 1312 (1466)
.++-.+.+.|.+.+++.|...+.+.+|...+ -.+++++.+.+.++.. +.+|..|+|+|.--...+..+
T Consensus 255 llGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~-~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf 333 (421)
T COG3075 255 LLGIRLHNQLQRQFEQLGGLWMPGDEVKKAT-CKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF 333 (421)
T ss_pred hhhhhHHHHHHHHHHHcCceEecCCceeeee-eeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence 4556788889999999999999999999998 6778899999888765 479999999996544332111
Q ss_pred -CCceeeCC-----------------CeEEeCCCcccc-----CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHH
Q psy2951 1313 -KGVELNGQ-----------------KAVVVNEYLETN-----VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 1369 (1466)
Q Consensus 1313 -~gl~~~~~-----------------G~i~vd~~~~t~-----~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~ 1369 (1466)
..+.-+.+ =++.+|+++|.+ ..|+||+|.+....++..-| . .-..|+..|-.
T Consensus 334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----c-GsGVaivta~~ 408 (421)
T COG3075 334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----C-GSGVAIVTALH 408 (421)
T ss_pred hcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----C-CcchHHHHHHH
Confidence 00100000 147888888875 57999999988765543110 0 00346666777
Q ss_pred HHHHhcCC
Q psy2951 1370 AALNMVEK 1377 (1466)
Q Consensus 1370 aa~~i~g~ 1377 (1466)
||..|+++
T Consensus 409 aa~qi~~~ 416 (421)
T COG3075 409 AAEQIAER 416 (421)
T ss_pred HHHHHHHH
Confidence 77776643
No 276
>PRK09897 hypothetical protein; Provisional
Probab=98.63 E-value=3e-07 Score=111.77 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC----CCCCc-----c---------------chhcccC----
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVK-----L---------------SKQLDIK---- 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~----~~~~~-----~---------------~~~~~~~---- 646 (1466)
+++|+||||||+|+++|..|.+.+...+|+++|+...++ |.... + ..+....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999999987767899999865333 11100 0 0000000
Q ss_pred ------------ccccccc-------------CHhHhhhCC--cEEEEceEEEEecccc--ccEEEccC-CCEEecCEEE
Q psy2951 647 ------------ADSILLR-------------TEEFYKDND--IHVIKGKKIISDSELN--EKKIKLQD-GTSIDFTKIY 696 (1466)
Q Consensus 647 ------------~~~~~~~-------------~~~~~~~~g--v~~~~~~~v~~i~~~~--~~~v~~~~-~~~~~~d~lv 696 (1466)
...+..+ +.+.+...| +.++.+++|+.+ +.. ...+++.+ +..+.+|+||
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I-~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDL-QITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEE-EEeCCEEEEEECCCCeEEEcCEEE
Confidence 0011111 111223344 678888789988 433 33455444 4679999999
Q ss_pred EcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc
Q psy2951 697 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 756 (1466)
Q Consensus 697 iAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 756 (1466)
||||..+..+ +.+.. .++.+..... ..... .+.+|+|+|.|.++++.+..|...
T Consensus 160 LAtGh~~p~~--~~~~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDE--EEATR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCC--Chhhc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999643211 10111 1111111111 11122 379999999999999999988755
No 277
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.63 E-value=2.7e-06 Score=98.91 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=97.7
Q ss_pred HHHhc-cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEE
Q psy2951 751 AFCAS-KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVI 827 (1466)
Q Consensus 751 ~~l~~-~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi 827 (1466)
..|.+ .|..|.-+-..| +...+..+.+.+.+.+++.|++++.+.+|.++.. +++++..+.+.++ ..+.+|.+|
T Consensus 240 ~~L~~~~g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vV 315 (419)
T TIGR03378 240 RELEQATGLTLCELPTMP---PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFV 315 (419)
T ss_pred HHHHHHHCCCEEeCCCCC---CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEE
Confidence 34433 377777664333 2234577888899999999999999999999873 3456666776665 489999999
Q ss_pred EccccccCcccccc--------CCceee----C---------------CCcEEeCCCCCC-----CCCCeEEeccccccC
Q psy2951 828 VGIGTVLNTNYLDG--------KGVELN----G---------------QKAVVVNEYLET-----NVPGVYAGGDIAYAP 875 (1466)
Q Consensus 828 ~a~G~~p~~~~~~~--------~gl~~~----~---------------~G~i~vd~~~~t-----~~~~iya~GD~~~~~ 875 (1466)
+|+|.--...|++. +++.+. . .-.+.+|+.+|. ..+|+||+|-+....
T Consensus 316 LAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~ 395 (419)
T TIGR03378 316 LASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGY 395 (419)
T ss_pred EccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCC
Confidence 99998722233222 122221 0 114778988883 389999999998776
Q ss_pred CcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 876 LHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 876 ~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+....+ .+. -.|+..|..||++|.
T Consensus 396 d~~~~g----cG~-GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 396 DPIFEG----CGS-GVAVSTALHAAEQII 419 (419)
T ss_pred ChHhcC----CCc-hhHHHHHHHHHHhhC
Confidence 654211 112 378999999998874
No 278
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=98.62 E-value=3.8e-08 Score=95.62 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=59.2
Q ss_pred hhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCC---------------------CCCCe
Q psy2951 972 QFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM---------------------DSLPC 1029 (1466)
Q Consensus 972 ~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~---------------------~~l~~ 1029 (1466)
+..+|+++|+.+.|||.+++|..|... ...+.||||||+|++ +|++...|.. ..|..
T Consensus 30 r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl-~G~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 108 (129)
T cd03539 30 RDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSL-KGDLQGVPFRRGVKKDGKVNGGMPKDFKTKDHGLTK 108 (129)
T ss_pred ECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECC-CCCEeeccccccccccccccccccCCcChHHCCCce
Confidence 445789999999999999999988753 468999999999995 5999876642 23888
Q ss_pred EEEEEEcCCEEEEEcch
Q psy2951 1030 YKVTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1030 ~~v~~~~~~~~~~~~~~ 1046 (1466)
|++++ ..+.++++...
T Consensus 109 ~~v~~-~~g~Ifv~~~~ 124 (129)
T cd03539 109 LKVAT-RGGVVFASFDH 124 (129)
T ss_pred eeEeE-ECCEEEEEeCC
Confidence 88887 68888887553
No 279
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.61 E-value=7.1e-08 Score=100.28 Aligned_cols=67 Identities=22% Similarity=0.433 Sum_probs=57.5
Q ss_pred eEEEEeCCCCCCCcccCC-ceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEc
Q psy2951 506 NIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 573 (1466)
Q Consensus 506 ~~~a~~~~C~H~~~~l~~-g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~ 573 (1466)
++.|++..|+|+||...| +.-..+.|.|||||++|++. |++..+|+..+|+..+++.+.+..+++..
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~-g~vv~GPA~~~L~~~~~~~~~d~~~~~~~ 167 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPD-GGVVKGPAPRPLPIPPLEYDSDKLYLIGL 167 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCC-CCeeCCCCCCCcCCceEEEeCCceEEEEe
Confidence 556999999999999999 45556799999999999997 66889999999999999888776666543
No 280
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=98.55 E-value=8.7e-08 Score=92.13 Aligned_cols=62 Identities=27% Similarity=0.493 Sum_probs=49.1
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~ 1034 (1466)
.+..+|+++|+.+.|||.+++|..|... +..+.||+|+|+|+ .+|++...|. .++..|++.+
T Consensus 29 ~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd-~~G~~~~~p~-~~~~~y~~~~ 91 (123)
T cd03542 29 TRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFS-NTGKLLKVKD-PKTAGYPEGF 91 (123)
T ss_pred EECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEec-CCccEEECCc-ccccCcCccc
Confidence 3445789999999999999999988663 45899999999999 9999998764 2334555443
No 281
>PLN02518 pheophorbide a oxygenase
Probab=98.54 E-value=8.4e-08 Score=115.00 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=73.1
Q ss_pred CCeEEEEEeecCchhhhhh-hhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCC--------
Q psy2951 955 ADKVLAILTVGMDPLAAQF-AERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM-------- 1024 (1466)
Q Consensus 955 ~~~i~g~~~~g~~~~~~~~-~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~-------- 1024 (1466)
+++...+.+.|.+.++.+. .+|+++|+.+.|||.+++|+.|.+. ++.+.||||||+|+. +|+|...|..
T Consensus 102 ~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~-~G~c~~IP~~~~~~~~~~ 180 (539)
T PLN02518 102 PSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRIPQAAPEGPEAR 180 (539)
T ss_pred CCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcC-CCCeeecccccccccccc
Confidence 4556666777777777776 6899999999999999999999996 689999999999995 6999876532
Q ss_pred ------CCCCeEEEEEEcCCEEEEEcc
Q psy2951 1025 ------DSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1025 ------~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
..++.|++++ .+|.+++...
T Consensus 181 ~~~~~~a~v~sypv~e-~~GlIwV~~~ 206 (539)
T PLN02518 181 AVKSPRACAIKFPTMV-SQGLLFVWPD 206 (539)
T ss_pred cccCcccccceEeEEE-ECCEEEEEeC
Confidence 2378999998 7888888764
No 282
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=98.53 E-value=1.5e-07 Score=110.22 Aligned_cols=80 Identities=20% Similarity=0.390 Sum_probs=60.7
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCC-ceecCCEEEccCCCceEECCCCeeecCCCC-----------CCCCeE
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCY 559 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~-g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------~~l~~~ 559 (1466)
.++..++++++.+|+++|+.|.|||+|++|+. +......++||||||.|+.+ |++...|.. ..|+..
T Consensus 59 ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~d-G~L~~vp~~~~y~~~fd~~~~~L~~~ 137 (438)
T TIGR03228 59 AGRQPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSD-GRLVKVKAPGEYCEGFDKATRGLKKA 137 (438)
T ss_pred ECCeEEEEEECCCCCEEEEcccCCCCCCccccCCccccCEEEcCCCCCcccCC-CceeecCcccccCCCCChhhCCCcce
Confidence 34456666667899999999999999999986 66666789999999999974 999876532 135566
Q ss_pred EEEEEcCeEEEEE
Q psy2951 560 KVTIQNDDSVVVQ 572 (1466)
Q Consensus 560 ~v~i~~~~~~~~~ 572 (1466)
++....+-+|++-
T Consensus 138 rv~~y~GfIFv~l 150 (438)
T TIGR03228 138 RIASYRGFVFVSL 150 (438)
T ss_pred eEEEECCEEEEEe
Confidence 7766666555543
No 283
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.52 E-value=1.4e-07 Score=111.13 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=58.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------CCCCc--------------------cc-hhc----
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YDRVK--------------------LS-KQL---- 643 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-------~~~~~--------------------~~-~~~---- 643 (1466)
+||+|||||||||.||+.|++.|.+ |+++|++...+ ..++. +. ..+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~--V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGAR--VLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCC--EEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 5899999999999999999999988 77888764322 00000 00 000
Q ss_pred -----------c---------------cCcccccccCHhHhhhCCcEEEEceEEEEecccc-c-cEEEccCCCEEecCEE
Q psy2951 644 -----------D---------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-E-KKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 644 -----------~---------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~-~~v~~~~~~~~~~d~l 695 (1466)
+ ....++..-+...+++.|++++++++|.++...+ . ..|.++++..+.+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 0 0122223333455667899999999999993222 2 4566667789999999
Q ss_pred EEcCCCCC
Q psy2951 696 YLATGSSP 703 (1466)
Q Consensus 696 viAtG~~~ 703 (1466)
|||||+..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999654
No 284
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.50 E-value=1.5e-07 Score=93.07 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=53.0
Q ss_pred hhhhhhhcCCCCCCCccccc---------------eeecCCEEEcCCCCceeecCCCc-cccCCCCCCCCeEEEEEEc
Q psy2951 975 ERNIYAVGTKCSHYGAPLVK---------------GSLGDGRVRCPWHGACFNIATGD-IEDFPGMDSLPCYKVTIQN 1036 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~---------------g~~~~~~~~cp~h~~~f~~~~g~-~~~~p~~~~l~~~~v~~~~ 1036 (1466)
+++++|+++.|||.|+++.. |...++.+.||||+++||+++|. +...|+..+|+.|.++++.
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~ 151 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPAVILEYDS 151 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeC
Confidence 46799999999999997753 45567899999999999999884 6667999999999999964
No 285
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=98.47 E-value=3.6e-07 Score=107.43 Aligned_cols=60 Identities=27% Similarity=0.488 Sum_probs=49.6
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCC
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPG 552 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~ 552 (1466)
.++..++++++.+|+++|+.|.|||+|++|+.+.. ....++||||||+|+ .+|++...|.
T Consensus 59 ~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~-~~G~l~~vP~ 119 (433)
T TIGR03229 59 MGRQPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFN-NSGKLLKVKD 119 (433)
T ss_pred ECCeEEEEEECCCCcEEEEeCcCCCCCCCcccccccCCCEEEcCCCCCEec-CCcceEeCCC
Confidence 34455566666799999999999999999998754 456899999999999 5799998865
No 286
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=98.46 E-value=1.7e-07 Score=93.40 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=56.2
Q ss_pred hhhhhhhhhhhhhcCCCCCCCcccccee-ec-CCEEEcCCCCceeecCCCccccCCCCC--------------CCCeE-E
Q psy2951 969 LAAQFAERNIYAVGTKCSHYGAPLVKGS-LG-DGRVRCPWHGACFNIATGDIEDFPGMD--------------SLPCY-K 1031 (1466)
Q Consensus 969 ~~~~~~~g~~~a~~~~C~h~g~~l~~g~-~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~--------------~l~~~-~ 1031 (1466)
++.+..+|+++|+.+.|||.+++|..+. .. +..+.||+|||+|+ .+|++...|... .|+.+ .
T Consensus 49 ~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd-~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~ 127 (146)
T cd03538 49 VMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFK-TDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGA 127 (146)
T ss_pred EEEECCCCCEEEEeccCcCCCCEeecccccccCCEEECCCCCCEEC-CCCCEEECCchhcCCcccCCcchhhCCCCccee
Confidence 3445557899999999999999996433 32 56899999999999 499999777422 35566 4
Q ss_pred EEEEcCCEEEEEcc
Q psy2951 1032 VTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~ 1045 (1466)
+++ -.+.++++..
T Consensus 128 v~~-~~g~ifv~~~ 140 (146)
T cd03538 128 VDI-YRGFVFARLS 140 (146)
T ss_pred EEE-ECCEEEEEcC
Confidence 554 6778888654
No 287
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.33 E-value=7.5e-06 Score=87.70 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=85.9
Q ss_pred cCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEE--ecCEEEEccccccCcccccc--------CC
Q psy2951 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI--PADLVIVGIGTVLNTNYLDG--------KG 843 (1466)
Q Consensus 774 ~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i--~~D~vi~a~G~~p~~~~~~~--------~g 843 (1466)
++-.....+...+++.|..+..+.+|...+ -.+++++.+.+.+...| .+|..|+|+|.--...+..+ .+
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~-~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKAT-CKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeee-eeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 445667888899999999999999999887 45678888888887654 58999999996544332111 01
Q ss_pred cee--eC-----------------CCcEEeCCCCCCC-----CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHH
Q psy2951 844 VEL--NG-----------------QKAVVVNEYLETN-----VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 899 (1466)
Q Consensus 844 l~~--~~-----------------~G~i~vd~~~~t~-----~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~a 899 (1466)
+.+ ++ .-.+.+|+++|.+ ..|+||+|.+.+..++...| -+. ..|+..|..|
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGs-GVaivta~~a 409 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGS-GVAIVTALHA 409 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCc-chHHHHHHHH
Confidence 111 00 0136677777753 67899999998776654211 111 3677778888
Q ss_pred HHHhccC
Q psy2951 900 ALNMVEK 906 (1466)
Q Consensus 900 A~~i~~~ 906 (1466)
|+.|+.+
T Consensus 410 a~qi~~~ 416 (421)
T COG3075 410 AEQIAER 416 (421)
T ss_pred HHHHHHH
Confidence 8887654
No 288
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.28 E-value=3.6e-06 Score=103.01 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=38.2
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~ 353 (1466)
.|.|.+|...||++||+||+|+|+..- ++|.....+ ....++..|+.|+++++.
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G---~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNG---FHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccC---CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999997421 123222122 234467789999999875
No 289
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.25 E-value=1.1e-05 Score=99.44 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|.+.||+.||+||+|+|+. ... +..+..-.....|...|+.|+++++.
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLH---GANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccC---cccccchhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999963 221 11111112346788889999999864
No 290
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1e-05 Score=100.69 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
+.++||||||+|.|||+||..+++.|.+|.|++...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 346899999999999999999999999988876544
No 291
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.24 E-value=5.9e-06 Score=101.16 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-|.|.+|...||++|++||+|+|+. ... +..+..-.....++..|+.|++++..
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~h---G~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNGFH---GANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccCCC---CCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999974 221 11111112335677889999998864
No 292
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.23 E-value=1.1e-06 Score=110.36 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=74.8
Q ss_pred CCCcEEEECCCh--HHHHHHHHHhccCCeEEEEeecCccCcc-------------ccCHHHHHHHHHHHHhcCcEEEccc
Q psy2951 733 PESNVVVIGSSF--IGMEAAAFCASKVKSVTVVGRGAVPFQE-------------SLGKEVGERITKLFESKGVKFVMKA 797 (1466)
Q Consensus 733 ~~~~vvVvG~G~--~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~gv~~~~~~ 797 (1466)
..+++.|+|+++ ++.+++..+...+..++++.+....+.. .....+.+.+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 478899999998 8999999999888888776554433211 0124566677888889999999999
Q ss_pred eEEEEEecCCCceEEEECCC--Cc-EEecC-EEEEccccccC
Q psy2951 798 NVSSFEKNEKNDVTAANLDN--GT-TIPAD-LVIVGIGTVLN 835 (1466)
Q Consensus 798 ~v~~i~~~~~~~~~~v~~~~--g~-~i~~D-~vi~a~G~~p~ 835 (1466)
.++++.. +++++..+...+ ++ .+.++ .||+|+|..++
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999874 356666665533 33 47786 79999997765
No 293
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.23 E-value=3.1e-06 Score=93.87 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---------cc-------hhcc-----------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---------LS-------KQLD----------- 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---------~~-------~~~~----------- 644 (1466)
.....||+||||||||++||+.|++.|++ |+++|+...++..... .. ..++
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~--V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLK--VAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCe--EEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 34468999999999999999999999988 7888877554321100 00 0000
Q ss_pred -cCcccccccCHhHhhhCCcEEEEceEEEEeccccccEE---Ecc-----------CCCEEecCEEEEcCCCC
Q psy2951 645 -IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI---KLQ-----------DGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 645 -~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v---~~~-----------~~~~~~~d~lviAtG~~ 702 (1466)
.+..++...+.+...+.|++++.+++|..+...++..+ .+. +..++.++.||+|||..
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 11222233344455678999999998887732222111 110 22479999999999953
No 294
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.23 E-value=2.1e-06 Score=92.51 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=53.9
Q ss_pred CCeEEEEeCCCCCCCcccCCc------e-------------e-------c-----CCEEEccCCCceEECCC-CeeecCC
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKG------S-------------L-------G-----DGRVRCPWHGACFNIAT-GDIEDFP 551 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g------~-------------~-------~-----~~~~~Cp~H~~~f~~~~-G~~~~~p 551 (1466)
++.+.|++..|+|+||++..- . + + .+.+.||||+++||+.+ |.+..+|
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GP 254 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGP 254 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCC
Confidence 578999999999999988221 0 1 1 13899999999999987 5899999
Q ss_pred CCCCCCeEEEEEEcC--eEEEEE
Q psy2951 552 GMDSLPCYKVTIQND--DSVVVQ 572 (1466)
Q Consensus 552 ~~~~l~~~~v~i~~~--~~~~~~ 572 (1466)
+..+|..++++.+.+ .++...
T Consensus 255 A~rpLp~i~l~~d~~~~~l~AvG 277 (321)
T TIGR03171 255 TVRPLPAVILEWDSSTDYLYAIG 277 (321)
T ss_pred CCCCCCcceEEEeCCCCeEEEEe
Confidence 999999999988743 344433
No 295
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=98.22 E-value=5.2e-06 Score=75.46 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=50.7
Q ss_pred HHHHhcCCCCCCCCCccceeccc-cccEEEEeeCCCCc-------------------------------------eEEEc
Q psy2951 1370 AALNMVEKKTSLSTIPFFWTMLF-GVGFRFAGYAAGHT-------------------------------------QVDIV 1411 (1466)
Q Consensus 1370 aa~~i~g~~~~~~~~p~~w~~~~-~~~~~~~g~~~~~~-------------------------------------~~~~~ 1411 (1466)
|++||.|...||...|+|||+++ +..++.+|...+.- .....
T Consensus 1 AG~NM~ga~~py~hq~~fwSdlgp~vgyeAvG~~DS~L~Tv~v~a~~~~~~~~k~~~e~~~~~~~s~~~~~~~~~~~~~~ 80 (133)
T PF14721_consen 1 AGENMTGANKPYWHQSMFWSDLGPDVGYEAVGIVDSSLPTVSVWAKPSEKDTPKAAVEASGSGIRSESENEAAASSSEKE 80 (133)
T ss_dssp HHHHHTTT---S-S--EEEEESSTTEEEEEEES--TTS-EEEEEE---TTSSHHHHHHHHS-S-HHHHC-S---SEEEE-
T ss_pred CCccccCCCCcccccchhHhhcCCCcCeEEeeeccCCCceeeeeeccccccChhhhhhcccccccCccccccccccccCC
Confidence 68999999999999999999985 77788777532110 00000
Q ss_pred ---------CCcC-C---ceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHc
Q psy2951 1412 ---------GDLE-A---LKFTAYYSNADKVLAILTVGMDPLAAQFAERIKM 1450 (1466)
Q Consensus 1412 ---------~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1450 (1466)
.++. . ++-++||++|+++||++++|-...+..+|++|++
T Consensus 81 ~~~~~~~~~~~~~~~e~~~kGVVfYLrd~~VvGillWNvf~~~~~AR~ii~~ 132 (133)
T PF14721_consen 81 SSSVSAAEAKSPEEGEDYGKGVVFYLRDDRVVGILLWNVFNRMPIARKIIAE 132 (133)
T ss_dssp ----------S---GGG-SEEEEEEEETTEEEEEEEES--S-HHHHHHHHHH
T ss_pred CcccccccccCcccccccCceEEEEEcCCeEEEEEEeeccCccHHHHHHhhc
Confidence 0000 1 2347899999999999999999999999999975
No 296
>PLN02463 lycopene beta cyclase
Probab=98.22 E-value=2.8e-06 Score=101.95 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=68.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-------Cccchhcc-----------------
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-------VKLSKQLD----------------- 92 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-------~~~~~~~~----------------- 92 (1466)
.....+||+||||||||+++|..|++.|++|.|++.......+ +.. ..+...+.
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 3445689999999999999999999999998887654322111 100 00000000
Q ss_pred -------cCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 93 -------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 93 -------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
....++...+.+.+.+.+++++.........+.+...|+++++.++.+|.||.|+|....
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000011112223334568888654322222223345677888889999999999998654
No 297
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.21 E-value=1.2e-05 Score=92.22 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=40.0
Q ss_pred ccEEECCCCCcCCCCEEEecccccccCccCCCCc-ceeccHHHHHHHHHHHHHHhcCCC
Q psy2951 298 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN-ASIGHYQLAQYHGRIAALNMVEKK 355 (1466)
Q Consensus 298 g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~-~~~~~~~~A~~~g~~aa~~i~~~~ 355 (1466)
|+|.||.+.||+.|++||+|.|+..-. +|.+ .-..+--++.--|..+|++|.+..
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGl---HGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGL---HGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ccEEECCCCcccCcccEEeeeeccccc---ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 789999999999999999999987532 2322 222233345677888888888764
No 298
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.21 E-value=1.1e-05 Score=99.65 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=39.0
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcc-eeccHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNA-SIGHYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~-~~~~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...||++||+||+|+|+... .+ |... --.....+.-.|++|+++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~h-Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTG--LH-GANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccc--cC-cccccchhHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999997421 11 2211 1123455778899999998753
No 299
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=98.20 E-value=1.2e-06 Score=89.40 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=55.2
Q ss_pred hhhhhhhhcCCCCCCCcccc-ceeec-CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLV-KGSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 1041 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~-~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~ 1041 (1466)
.+++++++...|||.||... .+... .+.+.|||||+.||+ +|.+...|+..+|+.|++++..+..+.
T Consensus 104 ~~~~~~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~-~G~~~~gpa~~~L~~~~~~~~~~~~~~ 172 (174)
T TIGR01416 104 GKPEWLVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDT-AGRVRKGPAPLNLPVPPYKFLSDTTIL 172 (174)
T ss_pred cCCcEEEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECC-CCcEecCCCCCCCCCCCEEEcCCCEEE
Confidence 35789999999999998654 33333 468999999999997 599999999999999999996666554
No 300
>PLN02463 lycopene beta cyclase
Probab=98.19 E-value=6.8e-06 Score=98.70 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=71.2
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC-----------ccchhcc--------------
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLD-------------- 644 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~-----------~~~~~~~-------------- 644 (1466)
++....+||+||||||||+++|..|++.|.+ |.++|+.+...+... .+...+.
T Consensus 23 ~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~--V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~ 100 (447)
T PLN02463 23 PSKSRVVDLVVVGGGPAGLAVAQQVSEAGLS--VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGK 100 (447)
T ss_pred CccccCceEEEECCCHHHHHHHHHHHHCCCe--EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCC
Confidence 3455568999999999999999999999988 777777543221110 0000000
Q ss_pred ----------cCcccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 645 ----------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 645 ----------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+...+...+.+.+.+.|++++.. +|.++...+ ...|++++|.++.+|.||.|+|....
T Consensus 101 ~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~-~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 101 KKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQA-KVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CccccCcceeEEHHHHHHHHHHHHhhcCCEEEee-EEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 011111122233345578998754 588773222 34577788889999999999997654
No 301
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.18 E-value=2.5e-05 Score=97.34 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=30.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
...||||||+|.|||+||..+++.|.+ |+++++..
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~--VilleK~~ 49 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRR--VLVVTKAA 49 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCe--EEEEEccC
Confidence 468999999999999999999999987 77777754
No 302
>PRK06847 hypothetical protein; Provisional
Probab=98.16 E-value=7.8e-06 Score=98.24 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---------------ccc----------h---hcc-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLS----------K---QLD- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---------------~~~----------~---~~~- 644 (1466)
.+++|+||||||||+++|..|++.|++ |+++|+.+....... .+. . ...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~--v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIA--VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCC--EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 368999999999999999999999998 566665432110000 000 0 000
Q ss_pred -----------------------cCcccccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCC
Q psy2951 645 -----------------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 645 -----------------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG 700 (1466)
.....+...+.+.+.+.|++++.+++|..+.. .+...+.+.++.++.+|.||.|+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 00011112223344557999999998988832 223456667888999999999999
Q ss_pred CCCC
Q psy2951 701 SSPR 704 (1466)
Q Consensus 701 ~~~~ 704 (1466)
....
T Consensus 161 ~~s~ 164 (375)
T PRK06847 161 LYSK 164 (375)
T ss_pred CCcc
Confidence 6543
No 303
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.13 E-value=3.4e-05 Score=96.79 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 848 GQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 848 ~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-.|.|.+|.+.+|+.|++||+|+|+.... ++..+..-.....|+..|++|+++++.
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g~--hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGL--HGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEeccccccccc--CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999964211 111111112335677888888888764
No 304
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.12 E-value=1.1e-06 Score=105.25 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 1315 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 1315 (1466)
+..+...|.+.+++.|++++.+++|+++. .+++++..|.+.+|+ +.+|.||+|+|.... .++...++
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~-~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSID-VDGGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEE-EETTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchh-hcccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 46788889999999999999999999998 456677779999997 999999999997554 35555543
No 305
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.12 E-value=7.1e-06 Score=95.02 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=67.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc--c----h--------------------------hc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL--S----K--------------------------QL 643 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~--~----~--------------------------~~ 643 (1466)
+||+||||||||+++|+.|++.|.+ |+++|+........... . . ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~--v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR--VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 5899999999999999999999987 77777765432110000 0 0 00
Q ss_pred --------ccCcccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEcc-CCCEEecCEEEEcCCCCC
Q psy2951 644 --------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQ-DGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 644 --------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~-~~~~~~~d~lviAtG~~~ 703 (1466)
..+...+...+.+.+.+.|++++.+++++.+... +...+.+. ++.++++|+||+|+|...
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 0111122223344456679999999989887222 22234333 345799999999999643
No 306
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=98.11 E-value=2.1e-06 Score=101.83 Aligned_cols=89 Identities=25% Similarity=0.477 Sum_probs=75.5
Q ss_pred eEEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCC------CCC----
Q psy2951 957 KVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFP------GMD---- 1025 (1466)
Q Consensus 957 ~i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p------~~~---- 1025 (1466)
+.++..+.+...++.+..+|++.|+.+.|+|.+++|+.|.+.+ +.+.||+|||+|+ ..|+|...| ..+
T Consensus 41 ~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~-~~G~~~~ip~~~~~~~~~~~~~ 119 (367)
T COG4638 41 DPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYD-LDGRLRGVPARGYPLDFDKSEH 119 (367)
T ss_pred CceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCCCceEecCCCceEEC-CCCcEecCCccccCCCCCHhhC
Confidence 6666777777777888889999999999999999999999998 8999999999999 899988776 333
Q ss_pred CCCeEEEEEEcCCEEEEEcchh
Q psy2951 1026 SLPCYKVTIQNDDSVVVQARKD 1047 (1466)
Q Consensus 1026 ~l~~~~v~~~~~~~~~~~~~~~ 1047 (1466)
.|..|++++ ..|-+|+.....
T Consensus 120 ~l~~~~~~~-~~G~Iwi~~~~~ 140 (367)
T COG4638 120 GLKRYPVEE-RYGFIWIWLGDP 140 (367)
T ss_pred CccccceEE-EccEEEEecCCC
Confidence 488899998 778888865443
No 307
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.10 E-value=3.8e-05 Score=96.03 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|...+|++|++||+|+|+..... +.....-.....|...|++|+++++.
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~h--Ganrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLH--GANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcC--CCccccchhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999642211 11111112335778888888888764
No 308
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.10 E-value=3.7e-05 Score=93.00 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=37.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|...||+.|++||+|.++. ... +..+..-.....+..-|++|++++..
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~h---G~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVH---GANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCC---ccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999964 221 11111112335778889999998854
No 309
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.09 E-value=1.8e-05 Score=70.77 Aligned_cols=69 Identities=28% Similarity=0.527 Sum_probs=61.4
Q ss_pred cccccccceeeEEEEeecCCceEEEecccCCCeEEEEEEcCCEEEEEEEECCCHHHHHHHHHHhcCCCcc
Q psy2951 363 FFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAEQVLEFPYSS 432 (1466)
Q Consensus 363 ~~~s~~~~~~~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~i~~~~~~ 432 (1466)
||||+|++..++++|.+...++.+..|+++...|..++..+++++|+..+|. +.....++.+|+.+..+
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~ 69 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARV 69 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B-
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCc
Confidence 7999999999999999999999999999999999999999999999999995 88888888999888765
No 310
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.09 E-value=3.3e-05 Score=88.66 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=42.2
Q ss_pred CcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 850 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 850 G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|.|.||.+.||+.|++||+|.|+..... +..+...-+.-+++--|+.+|++|.+..
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlH--GANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLH--GANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccc--cchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 7899999999999999999999865332 2223333344577888999999998764
No 311
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.08 E-value=6.7e-05 Score=94.76 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=37.5
Q ss_pred CCcEEeCCCCC----CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLE----TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~----t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-|.|.+|...| |++|++||+|+|+.... ++..+..-.....|+..|++|+++++.
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~--hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVSV--HGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccCc--CcccccchhhHHHHHHHHHHHHHHHHH
Confidence 47789998888 99999999999975211 111111112345788889999888764
No 312
>PRK06847 hypothetical protein; Provisional
Probab=98.06 E-value=1.2e-05 Score=96.50 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC---------------CCchhh-------------ccC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLSKQL-------------DIK 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~---------------~l~~~~-------------~~~ 1117 (1466)
+.+|+|||||+||+++|..|++.|. +|+|+|+.+...-.-. -+...+ ...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~--~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI--AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 5689999999999999999999998 9999998864210000 000000 000
Q ss_pred cc---cc--------------cc-------cChhhhccCCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecC
Q psy2951 1118 AD---SI--------------LL-------RTEEFYKDNDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATG 1171 (1466)
Q Consensus 1118 ~~---~~--------------~~-------~~~~~~~~~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG 1171 (1466)
.. .+ .+ ...+.+.+.+++++.+++|+.+ +.... .|.+.+|.++.+|.||.|+|
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i-~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAI-EQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEE-EEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 00 00 00 0011233458999999999999 65433 56677898999999999999
Q ss_pred CCC
Q psy2951 1172 SSP 1174 (1466)
Q Consensus 1172 ~~~ 1174 (1466)
...
T Consensus 161 ~~s 163 (375)
T PRK06847 161 LYS 163 (375)
T ss_pred CCc
Confidence 754
No 313
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.06 E-value=1.3e-05 Score=96.98 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=67.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC-------c-cc---h------hcc--c---------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-------K-LS---K------QLD--I--------- 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~-------~-~~---~------~~~--~--------- 645 (1466)
..+||+||||||||++||+.|+++|++ |+++|+......... . +. . .+. .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~--V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQ--VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMT 81 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCe--EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEc
Confidence 358999999999999999999999998 777777644321100 0 00 0 000 0
Q ss_pred -------C-----------------cccccccCHhHhhhCCcEEEEceEEEEeccccccE-EEccCCCEEecCEEEEcCC
Q psy2951 646 -------K-----------------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK-IKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 646 -------~-----------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~-v~~~~~~~~~~d~lviAtG 700 (1466)
+ ...+-..+.+..++.|++++.+++|+.+...+... ....++.++.+|.||+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 82 EKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeC
Confidence 0 00000012233445799999999898873223332 2334677899999999999
Q ss_pred CCC
Q psy2951 701 SSP 703 (1466)
Q Consensus 701 ~~~ 703 (1466)
...
T Consensus 162 ~~s 164 (428)
T PRK10157 162 VNS 164 (428)
T ss_pred CCH
Confidence 643
No 314
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.05 E-value=7.7e-05 Score=82.88 Aligned_cols=166 Identities=23% Similarity=0.253 Sum_probs=107.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------------cccH
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------------------------SLGK 1247 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------------------------------~~~~ 1247 (1466)
..+|+|||+|+.|+-+|..|++.|.+|.++++...+-.. .-+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987543110 0013
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC-----------CCCeeecCEEEEeeccccCcc--cccc--
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----------NGTTIPADLVIVGIGTVLNTN--YLDG-- 1312 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~-----------~g~~i~~D~vv~a~G~~p~~~--~~~~-- 1312 (1466)
++...|.+..++.|++++.++.++++...+++++..+... +..++.|+.||.|+|...... +.+.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 4556677778889999999999999873333466666543 224789999999999644322 2121
Q ss_pred -CCceeeCCCe--------EEeCCCccccCCCEEEecccccCCCccCCCceeeee-cHHHHHHHHHHHHHHhcC
Q psy2951 1313 -KGVELNGQKA--------VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1313 -~gl~~~~~G~--------i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~-~~~~A~~qa~~aa~~i~g 1376 (1466)
.+..+...+. .+|+.+-+. +|++|++|=.+..-+ |.+ |+. .|..-...|+.||+-++.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~-~~g~~~~gm~~~~~~----~~~-rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGEV-YPGLYVAGMAANAVH----GLP-RMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCeE-cCCEEEeehhhhhhc----CCC-ccCchhHhHHHhHHHHHHHHHH
Confidence 1111111111 122222222 799999997655322 222 232 355567788999887764
No 315
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.05 E-value=8.2e-05 Score=86.77 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcE-EeccEEEEeeccccCccccccCCce
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTNYLDGKGVE 293 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~Vi~a~G~~p~~~~l~~~gl~ 293 (1466)
.++...+.+.+.++|+++++++.|+.|+..+++ +..+.+.+|++ +.|+.||.|.|.-. ..+++..|+.
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~~ 221 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGIP 221 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCCC
Confidence 456677788888899999999999999987654 66778888876 99999999999653 3355555544
No 316
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.04 E-value=6.6e-05 Score=83.03 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=108.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------c------------------ccH
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------S------------------LGK 1247 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------------~------------------~~~ 1247 (1466)
.-+|+|||+|..|+-+|..|++.|.+|.++++...+-.. . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 457999999999999999999999999999987543100 0 013
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCC--cEEEEEcCC-----------CCeeecCEEEEeeccccC-ccccc-c
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKN--DVTAANLDN-----------GTTIPADLVIVGIGTVLN-TNYLD-G 1312 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g--~~~~v~l~~-----------g~~i~~D~vv~a~G~~p~-~~~~~-~ 1312 (1466)
++...|.+...+.|++++.++.++++.. +++ ++.+|.+.. ..++++++||.|+|.... ..++. .
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~-~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLIT-RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 4556677778889999999999999873 333 577776642 247899999999996543 33332 2
Q ss_pred CCceeeC-----CCeEEeC--CC---cccc--CCCEEEecccccCCCccCCCceeee-ecHHHHHHHHHHHHHHhcC
Q psy2951 1313 KGVELNG-----QKAVVVN--EY---LETN--VPGVYAGGDIAYAPLHSFYNKNASI-GHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1313 ~gl~~~~-----~G~i~vd--~~---~~t~--~~~v~a~GD~a~~p~~~~~~~~~~~-~~~~~A~~qa~~aa~~i~g 1376 (1466)
.++.... .+....+ +. -.|. +|++|++|=.+.--. |.+ |+ ..|..-...|+.||+-++.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~----~~~-rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVH----GLP-RMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhc----CCC-CcCchHHHHHHhhHHHHHHHHH
Confidence 2222211 1111111 11 1233 899999996554221 222 33 2455667788999887764
No 317
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=2.5e-05 Score=98.21 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..||||||||.|||+||+.+++.|....|+++++..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 469999999999999999999886434588888863
No 318
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=4e-05 Score=95.90 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
.|.|.+|...||++|++||+|+++....- .....-.....|...|++|+++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG---~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHG---ANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCC---CCccchhhhhhhHHHHHHHHHHHHHH
Confidence 47799999999999999999998753221 11111112356888899999988643
No 319
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.02 E-value=1.2e-05 Score=96.52 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccc----hhcc------------------------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLS----KQLD------------------------ 92 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~----~~~~------------------------ 92 (1466)
.++||+||||||||++||+.|++.|.+|.|+|...+...+... ..+. +.+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 3689999999999999999999999888887765543221110 0000 0000
Q ss_pred cC----------cccccccChhhhhcCCeEEEeCceEEEeccccccEE-Ee-cCCcEEecCEEEEccCCCCC
Q psy2951 93 IK----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI-KL-QDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 93 ~~----------~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v-~~-~~~~~~~~d~lviAtG~~~~ 152 (1466)
.. ...+..++.+..++.|.+++.++.+......+...+ .+ .++.+++++++|.|+|.+..
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 00 001111234445567999999988776443332322 22 23358999999999997643
No 320
>PRK08275 putative oxidoreductase; Provisional
Probab=98.02 E-value=4.7e-05 Score=95.42 Aligned_cols=46 Identities=43% Similarity=0.481 Sum_probs=34.7
Q ss_pred ccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 298 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 298 g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
|+|.||+.++|++|++||+|||+.... .....+...|+.|+.+++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~----------~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPH----------NYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchh----------HHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999864221 2234567788888877653
No 321
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.01 E-value=6.3e-05 Score=90.99 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCeEEeCCCccccCCCEEEeccccc-CCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1320 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1320 ~G~i~vd~~~~t~~~~v~a~GD~a~-~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.|+|.+|...||+.|++||+|.++. ..+. ..+..-.+-..+.--|++||+++..
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG---~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHG---ANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCCc---cccchhHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999874 2211 1111112346678889999999864
No 322
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.01 E-value=5.2e-06 Score=101.88 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecc
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (1466)
+..+...+.+.+++.|+++++++.|.+++.. ....+.+.+| ++.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCCc-EEECCEEEEcccc
Confidence 3567788888889999999999999999753 2234666666 6899999999984
No 323
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.01 E-value=5e-06 Score=104.60 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCH--HHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------cccHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 1204 PESNVVVIGSSF--IGMEAAAFCASKVKSVTVVGRGAVPFQE-------------SLGKEVGERITKLFESKGVKFVMKA 1268 (1466)
Q Consensus 1204 ~~~~vvVvG~g~--~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------~~~~~~~~~l~~~~~~~gv~~~~~~ 1268 (1466)
..+++.|+|+++ ++.+++..+...+.+++++.+..+.+.. .-+..+.+.|.+.+++.|+++++++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 8999999998888888776544332211 1135577778888899999999999
Q ss_pred eEEEEEecCCCcEEEEEcCC--CC-eeecC-EEEEeeccccC
Q psy2951 1269 NVSSFEKNEKNDVTAANLDN--GT-TIPAD-LVIVGIGTVLN 1306 (1466)
Q Consensus 1269 ~v~~i~~~~~g~~~~v~l~~--g~-~i~~D-~vv~a~G~~p~ 1306 (1466)
.++++. .+++++..|...+ ++ ++.++ .||+|+|..++
T Consensus 236 ~v~~l~-~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELL-TEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEE-eeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 999998 4567787776644 33 46786 79999997663
No 324
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.00 E-value=1.7e-05 Score=95.34 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---cch----hccc---------------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSK----QLDI--------------------- 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---~~~----~~~~--------------------- 645 (1466)
.++||+||||||||++||+.|++.|.+ |+++|+.+..++..+. +.. .+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~--VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLD--VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCe--EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 368999999999999999999999966 8888886544322211 000 0000
Q ss_pred -------------CcccccccCHhHhhhCCcEEEEceEEEEeccccccE-EE-ccCCCEEecCEEEEcCCCCCC
Q psy2951 646 -------------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK-IK-LQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 646 -------------~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~-v~-~~~~~~~~~d~lviAtG~~~~ 704 (1466)
+...+-.++.+...+.|++++.++.+..+...+... +. ..++.+++++++|.|+|....
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 001111122344556799999999998883223222 22 223358999999999996543
No 325
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.00 E-value=5.7e-05 Score=94.81 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=38.7
Q ss_pred CCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeee--cHHHHHHHHHHHHHHhcC
Q psy2951 1319 GQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1319 ~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~--~~~~A~~qa~~aa~~i~g 1376 (1466)
..|+|.+|.+++|+.|++||+|+|+.... .|. -|+. +-..|...|++|+++++.
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g~---hGa-nrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGL---HGA-NRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEeccccccccc---CCC-CCcchhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999975221 011 1121 345677889999988875
No 326
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.00 E-value=1.5e-05 Score=97.98 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
..+.+.|.+.+++.|++|+++++|++|. .++|+.+.+...+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~-v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQIL-VEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEE-EeCCcceEEeccccceeccceeEecCch
Confidence 5688899999999999999999999998 6677777888888878899999997665
No 327
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.00 E-value=5.5e-05 Score=91.95 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC-----CeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-----TTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-----~~i~~D~vv~a~G~~p 1305 (1466)
..+...|.+.+++.|++++.+++|++++ ..++.+ .+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~-~~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIK-TDGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEE-EeCCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 3556677888999999999999999997 333333 3433332 3789999999999653
No 328
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.99 E-value=5.6e-05 Score=94.61 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=38.7
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|+..||++||+||+|++++.. +|.....+ ....+...|++|+++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~----hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGV----HGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCC----CCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 378999999999999999999987532 12211111 2345778999999998753
No 329
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.99 E-value=1.8e-05 Score=95.86 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=32.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
.++||+||||||||++||+.|++.|++|.|+|..+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 469999999999999999999999999998876543
No 330
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.99 E-value=0.00033 Score=87.34 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=38.9
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec--cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...+|++||+||+|+|+..- . +|.. +.+ ....+.-.|++|+++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~-hGan-rl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTG--L-HGAN-RMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccc--c-CCCc-cchhhhHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999997421 1 1222 222 3445678899999998753
No 331
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.99 E-value=2.6e-05 Score=90.88 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=114.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccch-----hcccCcccccccC--------HhHhhh
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK-----QLDIKADSILLRT--------EEFYKD 660 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------~~~~~~ 660 (1466)
.++||+|||||.-|+++|+.|++++....|+++|++..+......-.. .+..++.++..++ .++.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999976679999998655433322111 0111111111111 122222
Q ss_pred CCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCC--cCCCC-----CCCCcEEEecCHHHHHhhcccCCC
Q psy2951 661 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TISQA-----DGVNKVFYLRTVEDANNIAPHITP 733 (1466)
Q Consensus 661 ~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~--~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~ 733 (1466)
+++. -+...++++|+|-... ...+. .|+. ....-+.+...++...+..
T Consensus 82 ~~~~------------------------f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~-~~~~ld~~~i~~~eP~l~~ 136 (429)
T COG0579 82 LGIP------------------------FINCGKLSVATGEEEVERLEKLYERGKANGVF-DLEILDKEEIKELEPLLNE 136 (429)
T ss_pred hCCc------------------------ccccCeEEEEEChHHHHHHHHHHHHHhhCCCc-ceeecCHHHHHhhCccccc
Confidence 2211 1234678888884321 11110 0111 1122233343333322211
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v 813 (1466)
+ ++|+ . .-...+++ -..++...+.+.+.++|+++.++++|+.|+...++ +..+
T Consensus 137 ~----~~aa---------l---~~p~~giV----------~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~ 189 (429)
T COG0579 137 G----AVAA---------L---LVPSGGIV----------DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVL 189 (429)
T ss_pred c----ceee---------E---EcCCCceE----------cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEE
Confidence 1 0000 0 00111111 12345677788888899999999999999965554 6677
Q ss_pred ECCCCcE-EecCEEEEccccccCccccccCCceee
Q psy2951 814 NLDNGTT-IPADLVIVGIGTVLNTNYLDGKGVELN 847 (1466)
Q Consensus 814 ~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~gl~~~ 847 (1466)
.+.+|++ ++|+.||.|.|.... .+++..|+..+
T Consensus 190 ~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~~ 223 (429)
T COG0579 190 NTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPED 223 (429)
T ss_pred EecCCcEEEEeeEEEECCchhHH-HHHHHhCCCcc
Confidence 8888877 999999999998654 56776666543
No 332
>PRK10015 oxidoreductase; Provisional
Probab=97.98 E-value=2.3e-05 Score=94.78 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=66.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---------------ccc--hhc-------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLS--KQL------------- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---------------~~~--~~~------------- 643 (1466)
..+||+||||||||++||+.|++.|++ |+++|+.+.++.... .+. ..+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~--VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 81 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLD--VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLT 81 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCe--EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEe
Confidence 358999999999999999999999998 777877654321100 000 000
Q ss_pred -----ccC--c--------ccc-cc------cCHhHhhhCCcEEEEceEEEEeccccccE-EEccCCCEEecCEEEEcCC
Q psy2951 644 -----DIK--A--------DSI-LL------RTEEFYKDNDIHVIKGKKIISDSELNEKK-IKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -----~~~--~--------~~~-~~------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~-v~~~~~~~~~~d~lviAtG 700 (1466)
..+ . ... .. .+.+..++.|++++.+++|+.+...+... ....++.++.+|.||+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 000 0 000 00 12233456799999998898873322222 2223456799999999999
Q ss_pred CC
Q psy2951 701 SS 702 (1466)
Q Consensus 701 ~~ 702 (1466)
..
T Consensus 162 ~~ 163 (429)
T PRK10015 162 VN 163 (429)
T ss_pred cc
Confidence 64
No 333
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=3.7e-05 Score=96.67 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=28.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcC--CCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNG--FTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g--~~v~i~~~~ 75 (1466)
.++||||||||.||++||+.+++.| .+|.|++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~ 37 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKT 37 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 4579999999999999999999875 566666543
No 334
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.97 E-value=2.5e-05 Score=94.59 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=98.7
Q ss_pred cEEEECCchHHHHHHHHHHhcCCC-CcEEEEcCCCCCCCCCCC-CchhhccCcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFT-GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~-~~i~li~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
+|||||||+||..+|..|++.+.. .+|+|||++..+.+.-.- +...+......+-+...+++.+.+..+.++.+...-
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 599999999999999999999843 599999998765433211 000011122233344445666666666666533222
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHH-HhhhcccCCCCeEEEEcCCHHHHHHHHHH
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDA-NNIAPHITPESNVVVIGSSFIGMEAAAFC 1224 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~-~~l~~~~~~~~~vvVvG~g~~g~e~a~~l 1224 (1466)
.. .+..+.+ .-|.. .. ..+++. +... .+.+.. + .-..+.-..+...+
T Consensus 81 ---~~------~~~~~~~-----~f~~~-----~~-~~~~~~----~~~~wl~~~~~---~-----~~~~~~~~~~~~~~ 128 (454)
T PF04820_consen 81 ---GE------RGESYFH-----PFGSY-----GP-PIDGVD----FHHYWLRLRAA---G-----FDGPFSDFSLSAAL 128 (454)
T ss_dssp ---SS------CCSEEEE-----ESS--------T-EETTEE----HHHHHHHHHHT---T-----CCSHHHHHHHCHHH
T ss_pred ---CC------CCCceEe-----ecccc-----CC-CCCCcc----HHHHHHHHhhc---C-----CCCCHHHHHHHHHH
Confidence 11 1111110 00110 00 001111 1111 111110 0 00111112222222
Q ss_pred hcCCCeEEEE--cCCCcCCccccc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1225 ASKVKSVTVV--GRGAVPFQESLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1225 ~~~g~~v~vv--~~~~~~~~~~~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
.+.+.-...- ........-.++ ..+.+.|.+..+++||+++.++ |+.+...++|.+..|++++|+++.+|++|=|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 129 AKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHccCCCCCcccccCCCCeeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECC
Confidence 3222211110 011111111222 5677889999999999999875 66665456788899999999999999999999
Q ss_pred ccccC
Q psy2951 1302 GTVLN 1306 (1466)
Q Consensus 1302 G~~p~ 1306 (1466)
|....
T Consensus 208 G~~s~ 212 (454)
T PF04820_consen 208 GRRSL 212 (454)
T ss_dssp GGG-C
T ss_pred Cccch
Confidence 97543
No 335
>PRK08275 putative oxidoreductase; Provisional
Probab=97.97 E-value=8.8e-05 Score=92.98 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
...||||||||.|||+||..+++.|....|+++++...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 34799999999999999999999854345888888653
No 336
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.97 E-value=2.1e-05 Score=79.74 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
...||+||||||+||+||++|+++|.+ |.++|+..++++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~k--V~i~E~~ls~GG 67 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLK--VAIFERKLSFGG 67 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCce--EEEEEeecccCC
Confidence 457999999999999999999999988 888888866554
No 337
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.95 E-value=6.8e-05 Score=90.24 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=57.1
Q ss_pred HhHHHHHHHHhhCCCEEEEEeecC---cccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec-CC--CCeEEEEcC-
Q psy2951 192 FIGMEAAAFCASKVKSVTVVGRGA---VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EK--NDVTAANLD- 264 (1466)
Q Consensus 192 ~~g~e~A~~l~~~g~~Vtlv~~~~---~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~--~~~~~v~~~- 264 (1466)
.++.|+...+.+.-.++.-+.... ...... ...+..-+.+.++++||+++++++|+++..+ ++ ++++.+...
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynq-yeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~ 270 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQ-YESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR 270 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCc-hhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence 478888888876522221111110 000111 2677788899999999999999999998764 22 456666553
Q ss_pred CC--c---EEeccEEEEeecccc
Q psy2951 265 NG--T---TIPADLVIVGIGTVL 282 (1466)
Q Consensus 265 ~g--~---~i~~D~Vi~a~G~~p 282 (1466)
+| + ..+.|.||+++|.--
T Consensus 271 ~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 271 NGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred CCceeEEEecCCCEEEEeCCcCc
Confidence 22 2 346899999998643
No 338
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.95 E-value=3.6e-05 Score=90.94 Aligned_cols=97 Identities=26% Similarity=0.324 Sum_probs=67.9
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC---------------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF--------------------------------------------- 1241 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~--------------------------------------------- 1241 (1466)
+|+|||+|.+|+-+|..+++.|.+|.++++.+.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 58999999999999999999999999999986551
Q ss_pred -----------------ccccc-----HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEE
Q psy2951 1242 -----------------QESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299 (1466)
Q Consensus 1242 -----------------~~~~~-----~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~ 1299 (1466)
.+.+| ..+.+.|.+.+++.||+++++++|.++. .+++....|.++++.++.||.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~-~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIE-KKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEE-EETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeee-ecCCceeEeeccCcccccCCEEEE
Confidence 00011 4566778888999999999999999998 445566778887888999999999
Q ss_pred eeccc
Q psy2951 1300 GIGTV 1304 (1466)
Q Consensus 1300 a~G~~ 1304 (1466)
|+|-.
T Consensus 161 AtGG~ 165 (409)
T PF03486_consen 161 ATGGK 165 (409)
T ss_dssp ----S
T ss_pred ecCCC
Confidence 99954
No 339
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=97.95 E-value=8.2e-06 Score=84.94 Aligned_cols=65 Identities=23% Similarity=0.474 Sum_probs=54.5
Q ss_pred hhhhhcCCCCCCCccccc-eeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 977 NIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 977 ~~~a~~~~C~h~g~~l~~-g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++|+...|+|.||...+ +.-..+.+.|||||++|+ ..|.++..|+..+|+.++++.+.+..+.+
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd-~~g~vv~GPA~~~L~~~~~~~~~d~~~~~ 165 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYD-PDGGVVKGPAPRPLPIPPLEYDSDKLYLI 165 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEc-CCCCeeCCCCCCCcCCceEEEeCCceEEE
Confidence 566999999999999887 445569999999999999 56668888999999999999966655544
No 340
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.95 E-value=9.8e-05 Score=92.41 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=38.3
Q ss_pred CCeEEeCCCccccCCCEEEecccccCCCccCCCce-eeeecHHHHHHHHHHHHHHhcC
Q psy2951 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN-ASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1320 ~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~-~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.|+|.+|..++|+.|++||+|+|+..... |.. .--.+-..+.-.|+.|+++++.
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~h---Ganrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLH---GANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcC---CCccccchhHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999752211 111 1112346678888999888875
No 341
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.94 E-value=0.00016 Score=91.32 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=38.1
Q ss_pred CccEEECCCCC----cCCCCEEEecccccccCccCCCCccee-ccHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLE----TNVPGVYAGGDIAYAPLHSFYNKNASI-GHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~----t~~~~iya~GD~~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 353 (1466)
.|.|.+|...| |++||+||+|+|+... . +|..... .....|+-.|++|+++++.
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~-hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVS--V-HGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccC--c-CcccccchhhHHHHHHHHHHHHHHHHH
Confidence 47889999998 9999999999997521 1 2222111 2345577889999998864
No 342
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.94 E-value=8.7e-06 Score=101.64 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
..+.+.|.+.+++.|+++++++.|++|. .+++++..|++.+|+++.+|.||++++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~-~~~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIE-TEGGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEE-eeCCEEEEEEECCCCEEECCEEEECCcH
Confidence 4677888899999999999999999998 4556777899999999999999998775
No 343
>PRK06834 hypothetical protein; Provisional
Probab=97.94 E-value=3.7e-05 Score=94.48 Aligned_cols=110 Identities=13% Similarity=0.268 Sum_probs=68.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC--CCC--------------Cccchh------------cc-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR--------------VKLSKQ------------LD- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~--~~~--------------~~~~~~------------~~- 644 (1466)
+..+|+||||||+|+++|..|+++|.+ |+++|+.+... ..+ ..+... +.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~--v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD--VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 358999999999999999999999988 66666543211 000 000000 00
Q ss_pred --cCcccc---------------cccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCCCc
Q psy2951 645 --IKADSI---------------LLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 645 --~~~~~~---------------~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~~~ 705 (1466)
.+...+ ...+.+.+++.|++++.+++++.+... +...+++.++.++.+|+||.|.|.....
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000 011123345669999999999888322 2345555677789999999999976544
No 344
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=7.1e-05 Score=93.74 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
..+||||||+|.||++||..+++.|.+|.|++..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4589999999999999999999999999888754
No 345
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.94 E-value=0.0001 Score=88.74 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhccCC------eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEec-CC--CceEEEE
Q psy2951 744 FIGMEAAAFCASKVK------SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EK--NDVTAAN 814 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~------~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~--~~~~~v~ 814 (1466)
.++.|+..++.+.-. +..-+.+... ..-..+..-+.+.|+++||+|+++++|+++..+ ++ +.+..+.
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~y----nqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~ 267 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKY----NQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIH 267 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCC----CchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEE
Confidence 478888888865511 2222222221 112566778899999999999999999999853 22 4566666
Q ss_pred CC-CCc-----EEecCEEEEccccccC
Q psy2951 815 LD-NGT-----TIPADLVIVGIGTVLN 835 (1466)
Q Consensus 815 ~~-~g~-----~i~~D~vi~a~G~~p~ 835 (1466)
.. +|. ..+.|.||+++|.-..
T Consensus 268 ~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 268 LTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred EEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 64 222 3468999999986543
No 346
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.94 E-value=7.2e-05 Score=98.88 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
.++||||||||.||++||+.+++.|.+|.|++...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999999999999988876543
No 347
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.94 E-value=2.1e-05 Score=91.12 Aligned_cols=104 Identities=21% Similarity=0.413 Sum_probs=66.4
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC--CCc----hhh-----------------ccCcc--cc
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV--KLS----KQL-----------------DIKAD--SI 1121 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~--~l~----~~~-----------------~~~~~--~~ 1121 (1466)
.+|+|||||+||+++|..|++.|. +|+|||+.+....... .+. +.+ ....+ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL--RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 379999999999999999999998 9999999875332100 000 000 00000 00
Q ss_pred --------ccc-------ChhhhccCCcEEEcCCeEEEeecCCCC--eEEec-CCcEEecCeEEEecCCC
Q psy2951 1122 --------LLR-------TEEFYKDNDIHVIKGKKIISDSELNEK--KIKLQ-DGTSIDFTKIYLATGSS 1173 (1466)
Q Consensus 1122 --------~~~-------~~~~~~~~~v~~~~~~~v~~i~d~~~~--~v~~~-~g~~~~yd~lvlAtG~~ 1173 (1466)
.+. ..+...+.+++++.+++|+.+ ..... .+.+. ++.++.+|.+|+|+|..
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDV-EIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeE-EEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 000 012334468999999999987 54333 34434 34579999999999974
No 348
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=8.8e-05 Score=93.49 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC---CCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNG---FTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g---~~~~v~~~~~~~ 630 (1466)
..||||||||.|||+||..+++.| .+ |+++++..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~--V~lleK~~ 41 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLS--VAVVSKTQ 41 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCc--EEEEEccc
Confidence 579999999999999999999998 55 77777753
No 349
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.93 E-value=5.3e-05 Score=90.59 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCc
Q psy2951 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 844 (1466)
Q Consensus 775 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 844 (1466)
+..+...+.+.+++.|++++.+++|+++.. +++.+..|.+.+|+ +.+|.||+|+|.... .+++..+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 467778888889999999999999999984 35556669999997 999999999998544 35555443
No 350
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.92 E-value=5.2e-05 Score=95.53 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=29.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQN--GFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~ 630 (1466)
..||||||||.|||+||..+++. |.+ |+++++..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~--V~lieK~~ 46 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK--VLIVEKAN 46 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe--EEEEECCC
Confidence 47999999999999999999998 877 77788764
No 351
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.92 E-value=1.1e-05 Score=100.91 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCCcEEEECCChHHHHHHHH-------HhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEec
Q psy2951 733 PESNVVVIGSSFIGMEAAAF-------CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 805 (1466)
.++..+++|++.++++.+.. +.+.+.+|++....+... ..++..+...+.+.+++.|+++++++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNL-LGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCc-ccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 36778999999999998864 556666777654443322 235667778888889999999999999999984
Q ss_pred CCCceEEEECC-CCc--EEecC-EEEEccc-cccCcccccc
Q psy2951 806 EKNDVTAANLD-NGT--TIPAD-LVIVGIG-TVLNTNYLDG 841 (1466)
Q Consensus 806 ~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~ 841 (1466)
+++++..+... +++ .+.++ .||+|+| +.+|.++++.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 35566665543 343 57785 6888665 5566555544
No 352
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=0.00029 Score=88.72 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEE
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 74 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~ 74 (1466)
..+||||||||.||++||+.+++. .+|.|++.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK 35 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTK 35 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeC
Confidence 357999999999999999999976 77777654
No 353
>PRK10015 oxidoreductase; Provisional
Probab=97.90 E-value=3.2e-05 Score=93.56 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
.++||+||||||||++||+.|++.|++|.|+|..+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 468999999999999999999999999888875543
No 354
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.90 E-value=0.00014 Score=87.17 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEcC-CCCeeecCEEEEeeccccC
Q psy2951 1248 EVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAANLD-NGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~g-v~~~~~~~v~~i~~~~~g~~~~v~l~-~g~~i~~D~vv~a~G~~p~ 1306 (1466)
.+.+.|.+.+++.+ |+++.+++|+.++ .++..+. ++++ ||+++.||+||-|=|....
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~-~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVE-QDGDGVT-VTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEE-EcCCceE-EEEcCCCcEEecCEEEECCCCchH
Confidence 46667777777766 9999999999998 3444454 8888 9999999999999996554
No 355
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.90 E-value=0.00015 Score=87.48 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 1314 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~g 1314 (1466)
+..+.+.|.+.++++|++++.+++|.+++ ..++. ..|.+.+| ++.+|.||+|+|.... .+++..|
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~-~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g 212 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALD-EHANG-VVVRTTQG-EYEARTLINCAGLMSD-RLAKMAG 212 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEE-ecCCe-EEEEECCC-EEEeCEEEECCCcchH-HHHHHhC
Confidence 36778888889999999999999999997 33333 35777776 7999999999997653 3444333
No 356
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.90 E-value=0.00017 Score=81.93 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=67.8
Q ss_pred HHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc
Q psy2951 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 751 ~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
...+..+....++.-..+.+....-+.+.+.+.+.+++.|++|+++++|.+++. +++.+..+.+++|.++++|.||+|+
T Consensus 148 ~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 148 IEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEcc
Confidence 344555666666665555555566688889999999999999999999999984 4555778999999999999999999
Q ss_pred ccccC
Q psy2951 831 GTVLN 835 (1466)
Q Consensus 831 G~~p~ 835 (1466)
|+...
T Consensus 227 Grsg~ 231 (486)
T COG2509 227 GRSGR 231 (486)
T ss_pred CcchH
Confidence 99876
No 357
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=0.00011 Score=92.72 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.7
Q ss_pred CccEEECCCCCcC------CCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLETN------VPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~ 353 (1466)
.|.|.+|...+|+ +||+||+|+|+..- ++|.....+ ....+.-.|++|+++++.
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g---~hGanrlggnsl~~~~v~Gr~Ag~~aa~ 412 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVS---VHGANRLGSNSTAECLVWGRIAGEQAAE 412 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEecccccccc---ccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4788999999998 99999999997521 122221111 234567889999988764
No 358
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.90 E-value=2.6e-05 Score=89.71 Aligned_cols=101 Identities=25% Similarity=0.411 Sum_probs=59.6
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC-C------CCC-------------------------------CCCCc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-N------FLP-------------------------------YDRVK 638 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~-~------~~~-------------------------------~~~~~ 638 (1466)
||+|||||.||..||+.+++.|.+ |.++... . |.| +....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~--V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK--VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 799999999999999999999998 5555322 1 111 00000
Q ss_pred cchhc-------ccCcccccccCHhHhhh-CCcEEEEceEEEEeccccc---cEEEccCCCEEecCEEEEcCCC
Q psy2951 639 LSKQL-------DIKADSILLRTEEFYKD-NDIHVIKGKKIISDSELNE---KKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 639 ~~~~~-------~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~---~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
.++.. ..+...+...+.+.+++ .+++++.++ |..+ ..++ .-|.+.+|..+.+|.+|||||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~-V~~l-~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGE-VTDL-IVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEE-EECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcc-cceE-EecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000 01122222233344555 589998765 8888 3332 2367788999999999999997
No 359
>PLN02697 lycopene epsilon cyclase
Probab=97.90 E-value=3.6e-05 Score=93.95 Aligned_cols=109 Identities=14% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---------Cccchhcc------------------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---------VKLSKQLD------------------ 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---------~~~~~~~~------------------ 644 (1466)
....+||+||||||||+++|..|++.|++ |+++++....+-.. ..+.....
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~--V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKLGLN--VGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhCCCc--EEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 34568999999999999999999999988 77777642211010 00000000
Q ss_pred ------cCcccccccCHhHhhhCCcEEEEceEEEEecccccc-E-EEccCCCEEecCEEEEcCCCCC
Q psy2951 645 ------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK-K-IKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 ------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.+...+...+.+.+.+.|+++ .+++|+.+....+. . +.+.++.++.++.||.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000111112223345568998 45568887322222 2 3456788999999999999654
No 360
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.89 E-value=9.2e-05 Score=92.09 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=35.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
-|.|.+|.+.+|+.|++||+|+|+.... ++..+..--....+..-|+.++..+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~--hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGV--HGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCC--CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999874211 01111111123466677888888775
No 361
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.89 E-value=0.0001 Score=91.73 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=36.1
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhc
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~ 352 (1466)
-|.|.+|...+|++||+||+|+|+..- . +|...--+ ....+.--|+.+++.++
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~-hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTG--V-HGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccC--C-CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999987421 1 23222111 23345667888888875
No 362
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.89 E-value=2e-05 Score=82.43 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
.+|+|||+|+||++||..|++.|+ +|+|+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~--~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR--EVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc--EEEEEEcCCC
Confidence 479999999999999999999999 9999999843
No 363
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.88 E-value=2.9e-05 Score=93.74 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=63.6
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCcc-----chhc----------c-------------
Q psy2951 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKL-----SKQL----------D------------- 92 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~----~~~~~~-----~~~~----------~------------- 92 (1466)
||+||||||||+++|+.|++.|.++.|++...+...+ +....+ .... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999998887754421111 000000 0000 0
Q ss_pred -cCcccccccChhhhhcCCeEEEeCceEEEecc-ccccEEEecCCcEEecCEEEEccCCCC
Q psy2951 93 -IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSP 151 (1466)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~d~lviAtG~~~ 151 (1466)
.....+...+.+.+.+.+++++.+..+....+ .+...+++.++.+++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00011111223334455788875543332222 233556677777899999999999876
No 364
>PRK06834 hypothetical protein; Provisional
Probab=97.88 E-value=4.5e-05 Score=93.69 Aligned_cols=111 Identities=14% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC--------------Cccchhc---------------c
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR--------------VKLSKQL---------------D 92 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~--------------~~~~~~~---------------~ 92 (1466)
..+||+||||||+|+++|..|++.|.++.|+|..+.......+ ..+...+ .
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 4589999999999999999999999999998865532100000 0000000 0
Q ss_pred cCccc---------------ccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 93 IKADS---------------ILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 93 ~~~~~---------------~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
..... +...+.+.+++.+++++.++.+.... +.+..++++.++.++.+|+||.|.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 00000 00112233456689999998876532 22344566667778999999999998654
No 365
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.87 E-value=3.6e-05 Score=92.94 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC----CCCCC--------------Cccchh------------
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF----LPYDR--------------VKLSKQ------------ 90 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~----~~~~~--------------~~~~~~------------ 90 (1466)
..++||+||||||+|+++|+.|++.|.++.|+|..+... .+..+ ..+...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 456899999999999999999999999998887654211 00000 000000
Q ss_pred ----------cccCcc--------------cccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCcEEecCEEEE
Q psy2951 91 ----------LDIKAD--------------SILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYL 145 (1466)
Q Consensus 91 ----------~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~~~~~d~lvi 145 (1466)
...... .+...+.+.+++.+++++.++.+.... +.+..+++++++.++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence 000000 000111223445689999888776532 2234556677788899999999
Q ss_pred ccCCCCC
Q psy2951 146 ATGSSPR 152 (1466)
Q Consensus 146 AtG~~~~ 152 (1466)
|.|....
T Consensus 164 AdG~~S~ 170 (392)
T PRK08773 164 ADGAAST 170 (392)
T ss_pred ecCCCch
Confidence 9998653
No 366
>PLN02697 lycopene epsilon cyclase
Probab=97.87 E-value=4.4e-05 Score=93.14 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEE
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 74 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~ 74 (1466)
...+||+||||||||+++|..|++.|++|.+++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~ 139 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGP 139 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecC
Confidence 3468999999999999999999999999888653
No 367
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.87 E-value=0.00014 Score=89.98 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=38.7
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec--cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~~~ 354 (1466)
-|.|.+|...+|++||+||+|+|+..- . +|.. +.+ ....+.-.|+.|++++...
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~-hGan-rl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTG--V-HGAN-RLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccc--c-CCCc-ccchHHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999997521 1 1222 222 3455677899999998654
No 368
>PLN02815 L-aspartate oxidase
Probab=97.86 E-value=0.0006 Score=85.18 Aligned_cols=54 Identities=24% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-|.|.+|...+|+.||+||+|+|+. ... +..+..-.....++..|+.|++++..
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~h---Ganrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLH---GANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCC---CCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999999974 221 11111112345777888888888753
No 369
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.86 E-value=0.0011 Score=82.90 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
.|.|.+|.+.+|+.|++||+|+|+. ... +..+..-.....|...|++|++++...
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLH---GANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccC---CCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 4779999999999999999999973 221 111111123457888899999988653
No 370
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.86 E-value=9.9e-05 Score=91.28 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=38.5
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
-|.|.+|.+.+|+.|++||+|+|+. ... +..+..-.....+...|+.|++++...
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVH---GANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccC---CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 3779999999999999999999974 221 111111123457778899999988643
No 371
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=9.9e-05 Score=92.44 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=37.3
Q ss_pred CCcEEeCCCCCCC-CCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETN-VPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~-~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|.+.+|+ .|++||+|+|+. ... +..+..-.....+...|++|+.+++.
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~h---Ganrlggnsl~~~~v~G~~Ag~~aa~ 401 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVH---GANRLGSNSLLDTLVFGQVTGRTVVQ 401 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccCCC---CcccccchHHHHHHHHHHHHHHHHHH
Confidence 4789999999985 999999999975 221 11111112335788888888888764
No 372
>PLN02815 L-aspartate oxidase
Probab=97.85 E-value=0.00039 Score=86.83 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=37.8
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcce-eccHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS-IGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~ 353 (1466)
-|.|.+|...+|++||+||+|+|+..- .| |.... -.....+.-.|+.|+++++.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G--~h-Ganrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTG--LH-GANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccC--CC-CCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999997421 12 22211 12345567788888888763
No 373
>PRK07190 hypothetical protein; Provisional
Probab=97.85 E-value=6.4e-05 Score=92.26 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=68.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-CCC--------------Cccc------------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDR--------------VKLS------------------ 640 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-~~~--------------~~~~------------------ 640 (1466)
...+|+||||||+||++|..|+++|.+ |+++|+.+... ... ..+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~--V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLN--TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN 81 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCC--EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC
Confidence 357999999999999999999999988 67777654211 000 0000
Q ss_pred -hhcc---c---Ccc-c------------ccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcC
Q psy2951 641 -KQLD---I---KAD-S------------ILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLAT 699 (1466)
Q Consensus 641 -~~~~---~---~~~-~------------~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAt 699 (1466)
..+. . ... . +...+.+.+.+.|++++.+++|+.+.. .+...+.+.+++++.+++||.|+
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECC
Confidence 0000 0 000 0 000112234567999999999998832 22334556677899999999999
Q ss_pred CCCC
Q psy2951 700 GSSP 703 (1466)
Q Consensus 700 G~~~ 703 (1466)
|++.
T Consensus 162 G~~S 165 (487)
T PRK07190 162 GSRS 165 (487)
T ss_pred CCCH
Confidence 9754
No 374
>PRK07190 hypothetical protein; Provisional
Probab=97.85 E-value=5.1e-05 Score=93.09 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=68.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-------------CCCccc-------------------
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------------DRVKLS------------------- 88 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~-------------~~~~~~------------------- 88 (1466)
+..+||+||||||+|+++|..|++.|.++.|++..+...... ....+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 345899999999999999999999999998887654321000 000000
Q ss_pred hhcc---c---Ccc-------------cccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCcEEecCEEEEccC
Q psy2951 89 KQLD---I---KAD-------------SILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATG 148 (1466)
Q Consensus 89 ~~~~---~---~~~-------------~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~~~~~d~lviAtG 148 (1466)
..+. . ... .+...+.+.+++.++++..++.+.... +.+..++.+.+++++.+++||.|.|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence 0000 0 000 000011223446789999998876532 2334456666777899999999999
Q ss_pred CCC
Q psy2951 149 SSP 151 (1466)
Q Consensus 149 ~~~ 151 (1466)
.+.
T Consensus 163 ~~S 165 (487)
T PRK07190 163 SRS 165 (487)
T ss_pred CCH
Confidence 754
No 375
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.85 E-value=0.00029 Score=78.02 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=104.1
Q ss_pred CcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccc----------cc---------------------------ccCHH
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF----------QE---------------------------SLGKE 225 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------~~---------------------------~~~~~ 225 (1466)
.+|+|||+|++|+-+|..+++.|.+|.++++...+- .. ....+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e 101 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE 101 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence 479999999999999999999999999999875321 00 01134
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCC-CeEEEEcC-----------CCcEEeccEEEEeeccccC-cccc-ccCC
Q psy2951 226 VGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLD-----------NGTTIPADLVIVGIGTVLN-TNYL-DGKG 291 (1466)
Q Consensus 226 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~~v~~~-----------~g~~i~~D~Vi~a~G~~p~-~~~l-~~~g 291 (1466)
+.+.+.+...+.|++++.++.+.++..+++. ++..+.++ +..++.++.||.|||.... ..++ +..+
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~ 181 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIV 181 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcC
Confidence 5566677777889999999999998765432 46665543 2247899999999996543 2222 2222
Q ss_pred ceecCC---c--cEEEC--CCC---Cc--CCCCEEEecccccccCccCCCCcceeccHHHH-HHHHHHHHHHhcCC
Q psy2951 292 VELNGQ---K--AVVVN--EYL---ET--NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLA-QYHGRIAALNMVEK 354 (1466)
Q Consensus 292 l~~~~~---g--~i~vd--~~~---~t--~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A-~~~g~~aa~~i~~~ 354 (1466)
+..... | ...++ |.+ .| -+|++|++|=.+.. +.| ..|.|-.--+ .-+|+.||+.++.+
T Consensus 182 ~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~----~~~-~~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 182 LEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAA----VHG-LPRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred cccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhh----hcC-CCCcCchHHHHHHhhHHHHHHHHHH
Confidence 221110 1 11111 110 22 47999999944331 112 2233433334 35888898887654
No 376
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.85 E-value=4.5e-05 Score=92.02 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=65.8
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------c-----chhcc---------------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------L-----SKQLD--------------------- 644 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~-----~~~~~--------------------- 644 (1466)
||+||||||||+++|+.|++.|.+ |+++|+.+..+..... + .....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~--v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR--VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe--EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 699999999999999999999987 7888876543321100 0 00000
Q ss_pred ---cCcccccccCHhHhhhCCcEEEEceEEEEeccc--cccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 645 ---IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL--NEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 ---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.+...+...+.+.+.+.|++++.++ |..+... ....+++.++.+++++.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERK-AIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccE-EEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0011111222233455688887554 7776222 23456666777999999999999766
No 377
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.85 E-value=0.00012 Score=92.35 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhc--CCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQN--GFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~v~i~~~~ 75 (1466)
..+||||||||.||++||+.+++. |.+|.|++..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 357999999999999999999998 8888887644
No 378
>PRK06184 hypothetical protein; Provisional
Probab=97.84 E-value=5.1e-05 Score=94.54 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
.++||+||||||+|+++|..|++.|.++.|+|..+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 358999999999999999999999999999886543
No 379
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.84 E-value=0.00013 Score=90.94 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.4
Q ss_pred cEEEECCchHHHHHHHHHH----hcCCCCcEEEEc
Q psy2951 45 TFIVVGGGPSGATCVETLR----QNGFTGKLYFIT 75 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~----~~g~~v~i~~~~ 75 (1466)
||||||||.|||+||+.++ +.|.+|.|++..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 7999999999999999998 678888887654
No 380
>PRK07045 putative monooxygenase; Reviewed
Probab=97.83 E-value=6.4e-05 Score=90.60 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=66.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC--C-------------------------CCccch-hc--
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--D-------------------------RVKLSK-QL-- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~--~-------------------------~~~~~~-~~-- 643 (1466)
..++|+||||||||+++|..|++.|++ |+++|+.+.... . ...... ..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHS--VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH 81 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCc--EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec
Confidence 458999999999999999999999998 666665532210 0 000000 00
Q ss_pred -c-----cCc-----cc---------ccccCHhHhh-hCCcEEEEceEEEEecccccc---EEEccCCCEEecCEEEEcC
Q psy2951 644 -D-----IKA-----DS---------ILLRTEEFYK-DNDIHVIKGKKIISDSELNEK---KIKLQDGTSIDFTKIYLAT 699 (1466)
Q Consensus 644 -~-----~~~-----~~---------~~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~---~v~~~~~~~~~~d~lviAt 699 (1466)
+ ... .. +...+.+.+. ..|++++++++++.+...++. .+++++++++.+|.||-|.
T Consensus 82 ~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgAD 161 (388)
T PRK07045 82 DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGAD 161 (388)
T ss_pred CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECC
Confidence 0 000 00 0000111122 247999999999988433332 4677788899999999999
Q ss_pred CCC
Q psy2951 700 GSS 702 (1466)
Q Consensus 700 G~~ 702 (1466)
|..
T Consensus 162 G~~ 164 (388)
T PRK07045 162 GAR 164 (388)
T ss_pred CCC
Confidence 964
No 381
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.83 E-value=5.6e-05 Score=91.24 Aligned_cols=109 Identities=17% Similarity=0.336 Sum_probs=69.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC-------ccc-------------hh-----------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-------KLS-------------KQ----------- 642 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~-------~~~-------------~~----------- 642 (1466)
..+||+||||||+|+++|+.|+++|++ |+++|+.+...+... .+. ..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~--v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLS--VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCE--EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 458999999999999999999999988 777776532110000 000 00
Q ss_pred -----------cccCc--------------ccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEE
Q psy2951 643 -----------LDIKA--------------DSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 643 -----------~~~~~--------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lv 696 (1466)
...+. ..+...+.+.+++.|++++.+++|+++... +...++++++.++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEE
Confidence 00000 000111122344569999999989887322 2345666778889999999
Q ss_pred EcCCCCCC
Q psy2951 697 LATGSSPR 704 (1466)
Q Consensus 697 iAtG~~~~ 704 (1466)
.|+|....
T Consensus 163 ~AdG~~S~ 170 (392)
T PRK08773 163 AADGAAST 170 (392)
T ss_pred EecCCCch
Confidence 99997554
No 382
>PRK06184 hypothetical protein; Provisional
Probab=97.83 E-value=5.9e-05 Score=93.99 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------------------------------CCCCccc---
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------------------------------YDRVKLS--- 640 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-------------------------------~~~~~~~--- 640 (1466)
..+|+||||||+||++|..|+++|.+ |+++|+.+... +......
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~--v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVS--FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc--EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 57999999999999999999999998 66676653211 0000000
Q ss_pred hhcc---c----C-------c-------ccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEc---cCCCEEecCEE
Q psy2951 641 KQLD---I----K-------A-------DSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKL---QDGTSIDFTKI 695 (1466)
Q Consensus 641 ~~~~---~----~-------~-------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~---~~~~~~~~d~l 695 (1466)
..+. . . . ..+...+.+.+.+.|++++++++++++...+ ..++++ .++.++++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence 0000 0 0 0 0000112233455699999999999883222 233444 45568999999
Q ss_pred EEcCCCCC
Q psy2951 696 YLATGSSP 703 (1466)
Q Consensus 696 viAtG~~~ 703 (1466)
|.|+|...
T Consensus 161 VgADG~~S 168 (502)
T PRK06184 161 VGADGGRS 168 (502)
T ss_pred EECCCCch
Confidence 99999654
No 383
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.83 E-value=2.8e-05 Score=97.18 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=74.5
Q ss_pred CCeEEEEcCCHHHHHHHHH-------HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1205 ESNVVVIGSSFIGMEAAAF-------CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~-------l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
.+..+++|+++++++.+.. +.+.+.+|+++...+..+ ..++..+...|.+.+++.||++++++.++++. .+
T Consensus 160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~-~~ 237 (557)
T PRK07843 160 PLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNL-LGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY-VE 237 (557)
T ss_pred cccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCc-ccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE-Ee
Confidence 5668899999999998764 455566677655443222 23567788888899999999999999999998 45
Q ss_pred CCcEEEEEcC-CCC--eeecC-EEEEeec-cccCccccc
Q psy2951 1278 KNDVTAANLD-NGT--TIPAD-LVIVGIG-TVLNTNYLD 1311 (1466)
Q Consensus 1278 ~g~~~~v~l~-~g~--~i~~D-~vv~a~G-~~p~~~~~~ 1311 (1466)
++++..|... +|+ ++.++ .||+|+| +.+|.++++
T Consensus 238 ~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 238 DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 6778777664 443 47785 6888766 455544443
No 384
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=0.00044 Score=87.11 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..||||||||.|||+||+.+++. .+ |+++++.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~--VilleK~ 36 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-AR--TAVLTKL 36 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CC--EEEEeCC
Confidence 47999999999999999999975 55 7888875
No 385
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.82 E-value=0.00023 Score=85.45 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcC-cEEEccceEEEEEecCCCceEEEECC-CCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAANLD-NGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~ 833 (1466)
..+...+.+.+.+.+ |+++.+++++.++.++ +.+. ++++ +|+++.||+||-|-|..
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCc
Confidence 346677778777766 9999999999999543 3444 6667 99999999999999964
No 386
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.82 E-value=4.8e-05 Score=92.43 Aligned_cols=111 Identities=13% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC---C--------------Cccchh---------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---R--------------VKLSKQ--------------- 642 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~---~--------------~~~~~~--------------- 642 (1466)
++||+||||||||+++|..|+++|....|+++|+.+..... . ..+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 47899999999999999999999733347777775321100 0 000000
Q ss_pred -----------cc--------------cCcccccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEE
Q psy2951 643 -----------LD--------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 643 -----------~~--------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lv 696 (1466)
.. .....+...+.+.+.+.|++++.+++|+.+.. .....++++++.++.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEE
Confidence 00 00001111122334556999999999988832 22334666778889999999
Q ss_pred EcCCCCCCc
Q psy2951 697 LATGSSPRT 705 (1466)
Q Consensus 697 iAtG~~~~~ 705 (1466)
.|+|.....
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999975443
No 387
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.81 E-value=9.2e-05 Score=75.69 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.6
Q ss_pred EEECCchHHHHHHHHHHhcC---CCCcEEEEcCCCC
Q psy2951 1070 IVVGGGPSGATCVETLRQNG---FTGKLYFITDENF 1102 (1466)
Q Consensus 1070 vIVG~G~aGl~aA~~L~~~g---~~~~i~li~~~~~ 1102 (1466)
+|||+|++|++++.+|.+.. ...+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999998873 4579999999653
No 388
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.81 E-value=0.00035 Score=84.80 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
..+...+.+.++++|++++.+++|++++..+++.+..|.+.+| ++.+|.||+++|..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 4556667788899999999999999996333456666887777 68999998887754
No 389
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=97.80 E-value=2.2e-05 Score=92.56 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=57.0
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC--------------CCCCeEEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM--------------DSLPCYKVTI 1034 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~--------------~~l~~~~v~~ 1034 (1466)
+.+..+|+++|+.+.|+|.+++|..+.. ....+.||||||+|+ .+|++...|.. ..|+.++...
T Consensus 66 v~R~~dG~i~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~-~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve 144 (433)
T TIGR03229 66 IARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFN-NSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFE 144 (433)
T ss_pred EEECCCCcEEEEeCcCCCCCCCcccccccCCCEEEcCCCCCEec-CCcceEeCCCcccccCccccCcHhhcCCccceEEE
Confidence 3445688999999999999999998754 456899999999999 89999877652 1256554333
Q ss_pred EcCCEEEEEcc
Q psy2951 1035 QNDDSVVVQAR 1045 (1466)
Q Consensus 1035 ~~~~~~~~~~~ 1045 (1466)
...|.+++...
T Consensus 145 ~y~GfIFv~l~ 155 (433)
T TIGR03229 145 SYRGFLFGSLN 155 (433)
T ss_pred EECCEEEEEcC
Confidence 35678887654
No 390
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.79 E-value=0.00018 Score=90.60 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCcEEEECCChHH-HHHHHHHhccCCeEEEEeecCccC-------------ccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 734 ESNVVVIGSSFIG-MEAAAFCASKVKSVTVVGRGAVPF-------------QESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 734 ~~~vvVvG~G~~g-~e~A~~l~~~g~~V~lv~~~~~~~-------------~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
..++.++|++.++ .+++..+...+..+.+..+..+.+ ....+..+...+.+.+++.|++++.++.+
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4567778887765 677766655555444332211100 01123456677888889999999999999
Q ss_pred EEEEecCCCceEEEEC--CCCc-EEec-CEEEEccccccC
Q psy2951 800 SSFEKNEKNDVTAANL--DNGT-TIPA-DLVIVGIGTVLN 835 (1466)
Q Consensus 800 ~~i~~~~~~~~~~v~~--~~g~-~i~~-D~vi~a~G~~p~ 835 (1466)
+++..+ ++++..|.. .++. ++.+ +.||+|+|--.+
T Consensus 241 ~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 998743 556655544 2333 5788 999999987654
No 391
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.79 E-value=0.0002 Score=86.64 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 778 VGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 778 ~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
+.+.+.+.+.+. +++++.++++++++.. ++.+ .+.+.+|+++.+|.||.|.|....
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEECCCcChH
Confidence 445566666665 4999999999999843 3333 577788889999999999998654
No 392
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.78 E-value=0.00014 Score=96.32 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
...||||||||.|||+||..+++.|.+ |+++++..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~--V~lleK~~ 46 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGAN--VLLLEKAH 46 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCe--EEEEeccc
Confidence 357999999999999999999999987 77777754
No 393
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.78 E-value=0.00012 Score=88.63 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+.+.|.+...+.||+++.++ |+++...+++.+..|.+++|+++.+|.+|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4566778888899999999875 7777656678888999999999999999999998653
No 394
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.77 E-value=7.8e-05 Score=90.75 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=30.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..+||+|||||+||+.||..+++.|.+ |.++++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~k--V~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAK--TLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCc--EEEEecc
Confidence 358999999999999999999999998 6666665
No 395
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.77 E-value=0.00041 Score=84.25 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
.+...+.+.+.++|++++.+++|++++..+++.+..+.+++| ++.+|.||+|+|-.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 444556778889999999999999997443455666777777 69999998887754
No 396
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.76 E-value=8.2e-05 Score=90.74 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+..+||+||||||||+++|..|++.|++ |+++|+.+
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~--v~v~E~~~ 51 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLR--IALIEAQP 51 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCE--EEEEecCC
Confidence 334468999999999999999999999998 66666653
No 397
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.76 E-value=6.8e-05 Score=91.26 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
.++||+|||||+||+.||..+++.|.+|.+++..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 4699999999999999999999999999998755
No 398
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.76 E-value=0.00023 Score=86.57 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHh----CC--cEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCc
Q psy2951 1247 KEVGERITKLFES----KG--VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 1315 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~----~g--v~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 1315 (1466)
..+...+.+.+++ +| ++++++++|++++ ..++....|.+.+| ++.||.||+|+|.... .+++.+|+
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~-~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIE-RSNDSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEE-ecCCCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCC
Confidence 4677778888888 77 8899999999998 34355666887777 6999999999996543 45555554
No 399
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.76 E-value=0.00032 Score=84.53 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 844 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 844 (1466)
..+...+.+.+++.|++++.++++.+++.. ++.+ .+.+.++ ++.+|.||+|+|.... .+++.+|+
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 567778888889999999999999999743 3333 5666666 7999999999998653 34444443
No 400
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.75 E-value=8.6e-05 Score=89.66 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=66.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC--------------------CCccchhc---c-------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD--------------------RVKLSKQL---D------- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~--------------------~~~~~~~~---~------- 644 (1466)
.++|+||||||||+++|+.|++.|.+ |+++|+.+..... ...+...+ .
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR--VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe--EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 57999999999999999999999987 7777765432110 00000000 0
Q ss_pred ----cC---------------------cccccccCHhHhhhCC-cEEEEceEEEEec-cccccEEEccCCCEEecCEEEE
Q psy2951 645 ----IK---------------------ADSILLRTEEFYKDND-IHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYL 697 (1466)
Q Consensus 645 ----~~---------------------~~~~~~~~~~~~~~~g-v~~~~~~~v~~i~-~~~~~~v~~~~~~~~~~d~lvi 697 (1466)
.. ...+...+.+.+++.+ ++++ +++++.+. +.+...+++.++.++.+|.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVG 161 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEE
Confidence 00 0001111223345555 8888 77788873 2234456677787899999999
Q ss_pred cCCCCC
Q psy2951 698 ATGSSP 703 (1466)
Q Consensus 698 AtG~~~ 703 (1466)
|+|...
T Consensus 162 adG~~S 167 (388)
T PRK07608 162 ADGAHS 167 (388)
T ss_pred eCCCCc
Confidence 999643
No 401
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.75 E-value=2.5e-05 Score=95.88 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (1466)
..+.+.|.+.++++|++|+++++|++|..++ ++...+.+.++..+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCch
Confidence 6778899999999999999999999998754 4456677777778999999998876
No 402
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.75 E-value=0.00023 Score=89.83 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-------------------------------------
Q psy2951 36 AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN------------------------------------- 78 (1466)
Q Consensus 36 ~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~------------------------------------- 78 (1466)
+......++||||||+|.||++||+.+++.|.+|.|++.....
T Consensus 43 ~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~ 122 (635)
T PLN00128 43 SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWL 122 (635)
T ss_pred cCcceeeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCC
Q ss_pred -----------------------CCCCC------------------------CCccchhcccCcccccccChhhhhcCCe
Q psy2951 79 -----------------------FLPYD------------------------RVKLSKQLDIKADSILLRTEEFYKDNDI 111 (1466)
Q Consensus 79 -----------------------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (1466)
..+|. ..............+...+.+...+.++
T Consensus 123 ~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv 202 (635)
T PLN00128 123 GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT 202 (635)
T ss_pred CCHHHHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCC
Q ss_pred EEEeCceEEEeccccccEE------EecCCc--EEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCC
Q psy2951 112 HVIKGKKIISDSELNEKKI------KLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES 183 (1466)
Q Consensus 112 ~~~~~~~v~~~~~~~~~~v------~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1466)
+++.++.+......++..+ ...++. .+.++.||+|||.-.. ...........+...+..+.+.-..+..-.
T Consensus 203 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~-~~~~tt~~~~~tGDG~~mA~~aGA~l~~me 281 (635)
T PLN00128 203 QFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR-AYFSATSAHTCTGDGNAMVARAGLPLQDLE 281 (635)
T ss_pred EEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc-ccccccCCCCCCCHHHHHHHHcCCCCcCCc
Q ss_pred cEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHH---------HHHHHHHHHHhC------CcEEEcCceEE
Q psy2951 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKE---------VGERITKLFESK------GVKFVMKANVS 248 (1466)
Q Consensus 184 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~---------~~~~l~~~l~~~------GV~i~~~~~v~ 248 (1466)
-+-+.-.+..+-.....-.-.|.-..++......|....++. +...+.+.+.+. +-.+++...
T Consensus 282 fvqfhPt~~~~~~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~-- 359 (635)
T PLN00128 282 FVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLN-- 359 (635)
T ss_pred ceEEecccccCCCeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCCCCEEEEEcC--
Q ss_pred EEEecCCCCeEEEEcCCCcEEeccEE---------EEe--eccccCccccccCCceecCCccEEECCCCC----------
Q psy2951 249 SFEKNEKNDVTAANLDNGTTIPADLV---------IVG--IGTVLNTNYLDGKGVELNGQKAVVVNEYLE---------- 307 (1466)
Q Consensus 249 ~i~~~~~~~~~~v~~~~g~~i~~D~V---------i~a--~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~---------- 307 (1466)
.++.+.+ .+. .|..|..+.++-.....-.-|.|.+|...|
T Consensus 360 -------------------~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~ 420 (635)
T PLN00128 360 -------------------HLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPD 420 (635)
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccC
Q ss_pred cCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhc
Q psy2951 308 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 308 t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
|++||+||+|+|+... .|+....--.....+.-.|++|+++++
T Consensus 421 t~IpGLYAaGE~a~~g--~hGanRlggnsL~~a~vfGr~Ag~~aa 463 (635)
T PLN00128 421 AVVPGLMAAGEAACAS--VHGANRLGANSLLDIVVFGRACANRVA 463 (635)
T ss_pred CccCceEeeecccccc--CCCCCCCchhhHHHHHHHHHHHHHHHH
No 403
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.74 E-value=0.00023 Score=85.37 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=59.5
Q ss_pred HHHHHHHhhCCCEEEEEeecCcccc-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccE
Q psy2951 195 MEAAAFCASKVKSVTVVGRGAVPFQ-ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273 (1466)
Q Consensus 195 ~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~ 273 (1466)
-++...+.+.|.+++..+... .++ ......+.+.+.+.+++.|+++++++.|.+++.++ + ...+.+ +++++.+|.
T Consensus 76 ~d~~~~~~~~Gv~~~~~~~g~-~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~ 151 (400)
T TIGR00275 76 KDLIDFFESLGLELKVEEDGR-VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVET-SGGEYEADK 151 (400)
T ss_pred HHHHHHHHHcCCeeEEecCCE-eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEE-CCcEEEcCE
Confidence 344556677888877664332 221 12346788888999999999999999999997643 2 334555 456899999
Q ss_pred EEEeecccc
Q psy2951 274 VIVGIGTVL 282 (1466)
Q Consensus 274 Vi~a~G~~p 282 (1466)
||+|+|...
T Consensus 152 VIlAtG~~s 160 (400)
T TIGR00275 152 VILATGGLS 160 (400)
T ss_pred EEECCCCcc
Confidence 999999753
No 404
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.74 E-value=0.00011 Score=89.83 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
..+...|.+.++++|++++.+++|++++ .+++.+..|.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~-~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLL-VEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEE-ecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 4667778888899999999999999997 34445555666654 789999999999654
No 405
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.73 E-value=0.00029 Score=84.67 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHHHHh-CCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCc
Q psy2951 226 VGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 284 (1466)
Q Consensus 226 ~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (1466)
+...+.+.+.+ .|++++.++++++++.+++ . ..+++++|.++.+|+||.|.|.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~-~-~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAE-G-NRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCC-e-EEEEECCCCEEEeeEEEEecCCCchh
Confidence 33445455444 4799999999999987543 2 34778889999999999999987644
No 406
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.72 E-value=9.5e-05 Score=89.69 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=35.3
Q ss_pred hhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 658 YKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 658 ~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
+.+.+++++.++++.++... +...++++++.++.+|.||.|.|....
T Consensus 122 ~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 122 LHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 44568999999989887322 234566778889999999999996443
No 407
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=97.72 E-value=3.1e-05 Score=91.10 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=58.2
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccc-eeecCCEEEcCCCCceeecCCCccccCCCC-----------CCCCeEEEEEEcC
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCYKVTIQND 1037 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~-g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~-----------~~l~~~~v~~~~~ 1037 (1466)
+.+..+|++.|+.+.|+|.|++|.. +.-....+.||+|||+|+ .+|++...|.. ..|..+.++. ..
T Consensus 66 v~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~-~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~-y~ 143 (438)
T TIGR03228 66 VTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYK-SDGRLVKVKAPGEYCEGFDKATRGLKKARIAS-YR 143 (438)
T ss_pred EEECCCCCEEEEcccCCCCCCccccCCccccCEEEcCCCCCccc-CCCceeecCcccccCCCCChhhCCCcceeEEE-EC
Confidence 4455689999999999999999986 666667899999999999 89999876532 1266667766 67
Q ss_pred CEEEEEcc
Q psy2951 1038 DSVVVQAR 1045 (1466)
Q Consensus 1038 ~~~~~~~~ 1045 (1466)
|.+++...
T Consensus 144 GfIFv~l~ 151 (438)
T TIGR03228 144 GFVFVSLD 151 (438)
T ss_pred CEEEEEeC
Confidence 78888644
No 408
>PRK07045 putative monooxygenase; Reviewed
Probab=97.71 E-value=0.00012 Score=88.29 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
+.++||+||||||||+++|..|++.|+++.|+|....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4568999999999999999999999999999886554
No 409
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.70 E-value=0.00058 Score=77.71 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=65.7
Q ss_pred HHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeec
Q psy2951 200 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279 (1466)
Q Consensus 200 ~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G 279 (1466)
+....+....++.-..+.+....-+.+.+.+.+.+++.|++++++++|.+++..+ +.+..+.+++|.++++|.||+|+|
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccC
Confidence 4445565555665444444444558888999999999999999999999998754 447788999999999999999999
Q ss_pred cccCc
Q psy2951 280 TVLNT 284 (1466)
Q Consensus 280 ~~p~~ 284 (1466)
+....
T Consensus 228 rsg~d 232 (486)
T COG2509 228 RSGRD 232 (486)
T ss_pred cchHH
Confidence 87654
No 410
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.70 E-value=0.00034 Score=86.62 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=37.7
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...+|++||+||+|+|+..- . +|.....+ ....+.-.|++|+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~-hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTG--L-HGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccC--C-CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999997321 1 12221111 2344567889999988653
No 411
>PRK07236 hypothetical protein; Provisional
Probab=97.70 E-value=0.00014 Score=87.41 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC---Cch----hhc----cCc----------------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSK----QLD----IKA---------------- 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~---l~~----~~~----~~~---------------- 1118 (1466)
..+|+|||||++|+++|..|++.|+ +|+|+|+.+.....+.. +.. .+. ...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGW--DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 4689999999999999999999999 99999998642111110 111 010 000
Q ss_pred cc-c---ccc----C-h---h-hhcc-CCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCC
Q psy2951 1119 DS-I---LLR----T-E---E-FYKD-NDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGS 1172 (1466)
Q Consensus 1119 ~~-~---~~~----~-~---~-~~~~-~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~ 1172 (1466)
.. + ... . . + +++. .+++++.+++|+++ ..... +|.+.+|+++.+|.||.|-|.
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i-~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGF-EQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEE-EecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 00 0 000 0 0 0 0011 13578999999999 65443 467789999999999999996
No 412
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.69 E-value=0.0001 Score=75.96 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=58.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cch------------hcccCcc---------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSK------------QLDIKAD--------- 648 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~------------~~~~~~~--------- 648 (1466)
...||+|||||||||+||+.|++.|++ |.++|+...+++.... +.. .++...+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~k--V~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~ 93 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLK--VAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA 93 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS---EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCe--EEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence 468999999999999999999999998 7888887544432211 110 0000000
Q ss_pred ---cccccCHhHhhhCCcEEEEceEEEEeccccccEEE---c------c-----CCCEEecCEEEEcCCC
Q psy2951 649 ---SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIK---L------Q-----DGTSIDFTKIYLATGS 701 (1466)
Q Consensus 649 ---~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~---~------~-----~~~~~~~d~lviAtG~ 701 (1466)
+....+.....+.|++++..+.|+.+.-.++.+|. + . |-..++++++|=|||-
T Consensus 94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 01111122233579999998888776323323321 1 0 2237999999999994
No 413
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.69 E-value=0.00033 Score=86.75 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
-|.|.+|.+.+|+.|++||+|+|+. ... +..+..-.....+...|++|+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~h---Ganrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLH---GANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCC---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999999973 221 111111123356777889998888653
No 414
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.69 E-value=0.00081 Score=81.76 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC-----CcEEecCEEEEcccccc
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-----GTTIPADLVIVGIGTVL 834 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p 834 (1466)
.+...+.+.+++.|++++.+++|++++.. ++.+ .+.+.+ +.++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 44566778889999999999999999843 3333 233222 23799999999999654
No 415
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.69 E-value=0.00016 Score=87.54 Aligned_cols=36 Identities=42% Similarity=0.750 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
...++||+||||||||++||+.|++.|++ |+++|+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~--VlllEr~ 71 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIE--TFLIERK 71 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCc--EEEEecC
Confidence 34568999999999999999999999998 7777765
No 416
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.00034 Score=71.28 Aligned_cols=168 Identities=22% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccc-------------------------------------cH
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-------------------------------------GK 1247 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~-------------------------------------~~ 1247 (1466)
...|+|||+|++|+-+|.+|++.|.+|.++++.-.+-...+ +.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 46799999999999999999999999999998754411111 13
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC-----------CCeeecCEEEEeeccccCcc-ccccC--
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-----------GTTIPADLVIVGIGTVLNTN-YLDGK-- 1313 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~-----------g~~i~~D~vv~a~G~~p~~~-~~~~~-- 1313 (1466)
++...|....-+.|.++.....|+.+...++.++.+|..+= --.+++++||-+||-....- ++.+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 34445555667889999999999998743333677776642 24689999999999765432 33222
Q ss_pred --CceeeCCCeEEeC--CCc---cc--cCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1314 --GVELNGQKAVVVN--EYL---ET--NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1314 --gl~~~~~G~i~vd--~~~---~t--~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+..+...+....+ +.+ .| -+|++|++|=.++--+ |.+.-=..|..-...|+.||+-++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~----G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVH----GLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhc----CCcccCchhhhhhhchHHHHHHHHH
Confidence 1222222222222 221 12 2799999996544211 2221112345567788888877654
No 417
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.67 E-value=0.00016 Score=90.97 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=64.8
Q ss_pred CcEEEECCCHhH-HHHHHHHhhCCCEEEEEeecCccc-------------ccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q psy2951 183 SNVVVIGSSFIG-MEAAAFCASKVKSVTVVGRGAVPF-------------QESLGKEVGERITKLFESKGVKFVMKANVS 248 (1466)
Q Consensus 183 ~~vvVvGgG~~g-~e~A~~l~~~g~~Vtlv~~~~~~~-------------~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 248 (1466)
.++.++|++.++ .+++..+...+..+.+.++....+ ....+..+...+.+..++.|+++++++.++
T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~ 241 (581)
T PRK06134 162 RETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPAR 241 (581)
T ss_pred ccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEE
Confidence 366778888765 677766665555544432211100 011235567788888899999999999999
Q ss_pred EEEecCCCCeEEEEc--CCCc-EEec-cEEEEeeccccC
Q psy2951 249 SFEKNEKNDVTAANL--DNGT-TIPA-DLVIVGIGTVLN 283 (1466)
Q Consensus 249 ~i~~~~~~~~~~v~~--~~g~-~i~~-D~Vi~a~G~~p~ 283 (1466)
++..+ ++++..+.. .++. ++.+ +.||+|+|--.+
T Consensus 242 ~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 242 ELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 98754 356655543 2332 5788 999999986543
No 418
>PRK07588 hypothetical protein; Provisional
Probab=97.67 E-value=0.00014 Score=87.75 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC-C------CC--------ccch----------hc---ccCc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-D------RV--------KLSK----------QL---DIKA 647 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~-~------~~--------~~~~----------~~---~~~~ 647 (1466)
++|+||||||||+++|..|++.|++ |+++|+.+...- . .. .+.. .+ ....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE--PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc--eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence 4899999999999999999999998 666665532110 0 00 0000 00 0000
Q ss_pred c----------------ccccc----CHhHh---hhCCcEEEEceEEEEecccc-ccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 648 D----------------SILLR----TEEFY---KDNDIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 648 ~----------------~~~~~----~~~~~---~~~gv~~~~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
. ....- +...+ ...+++++++++|+++...+ ...+++++|+++++|.||.|.|...
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0 00000 01111 12369999999999883222 3356677888899999999999543
No 419
>PRK08244 hypothetical protein; Provisional
Probab=97.66 E-value=0.00014 Score=90.55 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-C--------------CCCccch----------------h-
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-Y--------------DRVKLSK----------------Q- 642 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-~--------------~~~~~~~----------------~- 642 (1466)
.++|+||||||+|+++|..|++.|.+ |+++|+.+... . ....+.. .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~--v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK--TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD 79 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc
Confidence 37899999999999999999999988 66666653211 0 0000000 0
Q ss_pred --cccC-------------cccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEcc--CC-CEEecCEEEEcCCCCC
Q psy2951 643 --LDIK-------------ADSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKLQ--DG-TSIDFTKIYLATGSSP 703 (1466)
Q Consensus 643 --~~~~-------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~~--~~-~~~~~d~lviAtG~~~ 703 (1466)
+... ...+...+.+.+++.|++++.+++++++...+ ..++++. ++ .++++|+||.|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 80 TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 0000 00001111223455799999999998873222 2233333 34 4799999999999754
No 420
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.66 E-value=7.9e-05 Score=89.99 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
++||+||||||||+++|+.|++.|.++.|+|....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 57999999999999999999999999988876554
No 421
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.65 E-value=0.0001 Score=88.70 Aligned_cols=32 Identities=44% Similarity=0.605 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
+||+||||||||++||+.|++.|++|.|+|..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999888764
No 422
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.65 E-value=0.00011 Score=88.42 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCcEEEEceEEEEec-cccccEEEccCCCEEecCEEEEcCCCC
Q psy2951 661 NDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 661 ~gv~~~~~~~v~~i~-~~~~~~v~~~~~~~~~~d~lviAtG~~ 702 (1466)
.|++++.+++|+.+. +....+++++++.++.+|.||.|.|..
T Consensus 119 ~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 489999999998883 223445666778889999999999964
No 423
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.64 E-value=8.3e-05 Score=88.80 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=27.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+||+||||||||+++|..|+++|++ |+++|+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~--v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID--VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE--EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc--cccchhcc
Confidence 5899999999999999999999998 77777764
No 424
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.64 E-value=0.00044 Score=85.03 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
..+...+.+.+++.|++++.++.|++++.+ ....+.+.+| ++.+|.||+|+|.-
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCCc-EEECCEEEEccccc
Confidence 456677888889999999999999999842 2235667666 69999999999854
No 425
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.64 E-value=0.00016 Score=87.38 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=67.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---------------------Cccchh--------c-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---------------------VKLSKQ--------L- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---------------------~~~~~~--------~- 643 (1466)
..+||+||||||||+++|..|++.|++ |+++|+.+...+.. ..+... +
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~--V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFS--VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYR 81 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCE--EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccc
Confidence 458999999999999999999999988 77777653211100 000000 0
Q ss_pred --------c----cCcccc--------c------ccCHhHhhhC-CcEEEEceEEEEeccc-cccEEEccCCCEEecCEE
Q psy2951 644 --------D----IKADSI--------L------LRTEEFYKDN-DIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 644 --------~----~~~~~~--------~------~~~~~~~~~~-gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~l 695 (1466)
. .+.... + ..+.+.+.+. +++++.++++..+... +...+.++++.++++|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 82 RLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLV 161 (391)
T ss_pred eEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 0 000000 0 0111223344 8999999888887322 234566677889999999
Q ss_pred EEcCCCCCC
Q psy2951 696 YLATGSSPR 704 (1466)
Q Consensus 696 viAtG~~~~ 704 (1466)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (391)
T PRK08020 162 IGADGANSQ 170 (391)
T ss_pred EEeCCCCch
Confidence 999996543
No 426
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.63 E-value=0.00019 Score=87.59 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL 1103 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~ 1103 (1466)
....+|+|||||+||+++|..|++.|+ +|+|||+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL--RIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC--EEEEEecCCcc
Confidence 346789999999999999999999999 99999998653
No 427
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.63 E-value=0.00019 Score=86.10 Aligned_cols=33 Identities=36% Similarity=0.677 Sum_probs=29.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+||+||||||||++||+.|+++|++ |+++|+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~--V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ--TFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc--EEEEecCC
Confidence 5899999999999999999999998 77777653
No 428
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.63 E-value=0.00018 Score=86.44 Aligned_cols=32 Identities=41% Similarity=0.680 Sum_probs=29.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+||+||||||||+++|+.|++.|++ |+++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~--V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE--TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc--EEEEECC
Confidence 5899999999999999999999988 7777765
No 429
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.63 E-value=4.1e-05 Score=92.67 Aligned_cols=101 Identities=18% Similarity=0.320 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc-----cch-------------hc---------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-----LSK-------------QL--------------- 643 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~-----~~~-------------~~--------------- 643 (1466)
|||||||||||++||+.+++.|.+ |+++|+.+++++.... ... .+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~--VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK--VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS---EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE--EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 799999999999999999999998 8999998776532111 000 00
Q ss_pred -------ccCcccccccCHhHhhhCCcEEEEceEEEEecccccc---EEEccC---CCEEecCEEEEcCC
Q psy2951 644 -------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK---KIKLQD---GTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---~v~~~~---~~~~~~d~lviAtG 700 (1466)
..++......+.+.+.+.|+++++++.+..+ ..++. .|.+.+ ..++.++.+|-|||
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v-~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDV-IRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 0111112222345566779999999998887 44432 233332 46899999999999
No 430
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.62 E-value=0.00032 Score=80.87 Aligned_cols=95 Identities=22% Similarity=0.345 Sum_probs=71.3
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCC-CcC----C----------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG-AVP----F---------------------------------------- 1241 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~-~~~----~---------------------------------------- 1241 (1466)
+|+|||+|..|+|+|.++++.|.+|.++... +.. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 5899999999999999999999999999422 111 0
Q ss_pred --cc------ccc-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1242 --QE------SLG-KEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1242 --~~------~~~-~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
+. +.+ ..+.+++.+.+++ .+++++ ..+|+++. .+++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~-~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLI-VENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEE-ECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEE-ecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00 011 3456677777877 688886 67899997 5778999999999999999999999998
No 431
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.62 E-value=0.00012 Score=86.15 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=35.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
++|+|||||+|||+||++|++++.+++++++|+++..++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 579999999999999999999998888999999877664
No 432
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.62 E-value=0.00013 Score=88.02 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=33.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
|.++.+||+||||||+|+++|..|++.|.++.|+|...
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 44556899999999999999999999999998887654
No 433
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.62 E-value=0.00021 Score=86.55 Aligned_cols=38 Identities=39% Similarity=0.501 Sum_probs=33.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
++..++||+||||||||++||..|++.|++|.|+|...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34456899999999999999999999999998887653
No 434
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.61 E-value=0.00018 Score=85.57 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=63.9
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC--CCc------cc---hhcc---------------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD--RVK------LS---KQLD--------------------- 644 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~--~~~------~~---~~~~--------------------- 644 (1466)
||+||||||||+++|+.|++......|+++|++...++. ..+ +. ....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999444444458999876544211 100 00 0000
Q ss_pred ---cCcccccccCHhHhhhCCcEEEEceEEEEeccccc-cEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 645 ---IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 645 ---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+...+...+.+.+...++ .+.+++|.++..... ..+.+++|.+++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0000111111222332344 556666988833333 4677888999999999999995544
No 435
>PRK05868 hypothetical protein; Validated
Probab=97.61 E-value=0.0003 Score=83.75 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC--C-------------CCccchhc-------------ccC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--D-------------RVKLSKQL-------------DIK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~--~-------------~~~~~~~~-------------~~~ 646 (1466)
+++|+|||||++|+++|..|+++|++ |+++|+.+...- . ...+...+ ..+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~--v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYS--VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 46899999999999999999999998 666666532110 0 00000000 000
Q ss_pred c------------------ccc---cccCHhHhh---hCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCC
Q psy2951 647 A------------------DSI---LLRTEEFYK---DNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 647 ~------------------~~~---~~~~~~~~~---~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
. ..+ ...+.+.+. ..+++++++++|+.+... +..+++++++.++++|.||-|-|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 0 000 001112222 358999999999888322 234577788889999999999995
Q ss_pred C
Q psy2951 702 S 702 (1466)
Q Consensus 702 ~ 702 (1466)
+
T Consensus 159 ~ 159 (372)
T PRK05868 159 H 159 (372)
T ss_pred C
Confidence 4
No 436
>PRK05868 hypothetical protein; Validated
Probab=97.61 E-value=0.00029 Score=83.92 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-----C-CC---------CCchhhc-------------cC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-----D-RV---------KLSKQLD-------------IK 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~-----~-~~---------~l~~~~~-------------~~ 1117 (1466)
|++|+|||||++|+++|..|++.|+ +|+|||+.+.+.- . ++ -+...+. ..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~--~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY--SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4689999999999999999999999 9999998854220 0 00 0000000 00
Q ss_pred ccc------------------ccccCh---hh-h--ccCCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecC
Q psy2951 1118 ADS------------------ILLRTE---EF-Y--KDNDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATG 1171 (1466)
Q Consensus 1118 ~~~------------------~~~~~~---~~-~--~~~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG 1171 (1466)
... +.+... +. . ...+++++++++|+.+ +.... +|++.+|+++++|.||-|-|
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i-~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTL-QDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEE-EecCCeEEEEECCCCeEEeCEEEECCC
Confidence 000 000000 01 1 1347889999999999 65433 46778999999999999999
Q ss_pred C
Q psy2951 1172 S 1172 (1466)
Q Consensus 1172 ~ 1172 (1466)
.
T Consensus 158 ~ 158 (372)
T PRK05868 158 L 158 (372)
T ss_pred C
Confidence 6
No 437
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.61 E-value=0.00081 Score=82.03 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 834 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 834 (1466)
..+...+.+.++++|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 355667778888999999999999999843 344545666544 799999999999754
No 438
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.61 E-value=0.00084 Score=80.84 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~ 1312 (1466)
+..+.+.|.+.+++.|++++.+++|++++ .+++. ..|.+.++ ++.+|.||+|+|.... .++..
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~-~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~ 206 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIE-PTELL-VTVKTTKG-SYQANKLVVTAGAWTS-KLLSP 206 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEE-ecCCe-EEEEeCCC-EEEeCEEEEecCcchH-HHhhh
Confidence 34667778888889999999999999998 33333 44776666 7899999999996433 34443
No 439
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.60 E-value=0.00013 Score=87.35 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=64.0
Q ss_pred EEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-------CCcc------c---hhc-------------------
Q psy2951 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RVKL------S---KQL------------------- 643 (1466)
Q Consensus 599 vVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-------~~~~------~---~~~------------------- 643 (1466)
+|||||+|||+||..|++.|.+ |+++|+.+..+.. ++.+ . ...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~--V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS--VLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc--EEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999999987 7777776432210 0000 0 000
Q ss_pred -------cc-----C----------cccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEccCCCEEecCEEEEcCC
Q psy2951 644 -------DI-----K----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -------~~-----~----------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG 700 (1466)
+. . ..++...+.+.+++.+++++.+++|..+.... ...+.+ ++.++.+|+||+|||
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 00 0 01111222344566799999999898883222 233444 466899999999999
Q ss_pred CCC
Q psy2951 701 SSP 703 (1466)
Q Consensus 701 ~~~ 703 (1466)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 643
No 440
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.59 E-value=0.00013 Score=85.72 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=34.2
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
+|+|||||+|||+||++|++++.+.+|+|+|+++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 6999999999999999999999777999999997655
No 441
>PLN02612 phytoene desaturase
Probab=97.59 E-value=0.00077 Score=84.45 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
..+.+.+.+.+++.|.++++++.|++|+..+++.+..+.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 456677888888899999999999999865566566678888989999999999753
No 442
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.59 E-value=0.00013 Score=88.12 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
...+||+||||||||+++|..|++.|+++.|+|...
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 346899999999999999999999999988887543
No 443
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.59 E-value=0.00023 Score=84.26 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=66.5
Q ss_pred cEEEECCchHHHHHHHHHHhc--CCCCcEEEEcCCCCCCCCCCC------Cchh--------hccCcccccccC------
Q psy2951 1068 TFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFLPYDRVK------LSKQ--------LDIKADSILLRT------ 1125 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~--g~~~~i~li~~~~~~~~~~~~------l~~~--------~~~~~~~~~~~~------ 1125 (1466)
+|+|||||+||+++|.+|++. |. +|.|+|+.+..+.++.. +... .........+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~--~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~ 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF--RIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRK 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC--eEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhh
Confidence 589999999999999999987 77 99999998754432221 1100 000000000000
Q ss_pred ----------hhh----hccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCC
Q psy2951 1126 ----------EEF----YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 1175 (1466)
Q Consensus 1126 ----------~~~----~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~ 1175 (1466)
.++ .+..+..++++++|..+ +++. |++.+|.++++|.||-|.|..+.
T Consensus 79 l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v-~~~~--v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 79 LKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL-DADG--VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred cCCCceEEEHHHHHHHHHHhhcccEEecCEEEEE-eCCE--EEECCCCEEEeeEEEECCCCCCC
Confidence 011 11123336668889999 7653 77789999999999999997654
No 444
>KOG2415|consensus
Probab=97.59 E-value=0.00053 Score=75.98 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHc----CCCccEEEEcCCCCCCCCC
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQN----GFTGKLYFITDENFLPYDR 636 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~----g~~~~v~~~~~~~~~~~~~ 636 (1466)
......||+|||||||||+||.+|+++ +.+..|.++|+...++.+.
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 344568999999999999999999874 5567788999987666543
No 445
>PRK06753 hypothetical protein; Provisional
Probab=97.58 E-value=0.00022 Score=85.65 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=63.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC--C-------------Cccchh----------cc---cCc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD--R-------------VKLSKQ----------LD---IKA 647 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~--~-------------~~~~~~----------~~---~~~ 647 (1466)
++|+||||||||+++|..|++.|++ ++++|+.+..... . ..+... +. ...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~--v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE--VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 4899999999999999999999998 6666665421100 0 000000 00 000
Q ss_pred cccc---------------ccCHhHhhh--CCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCC
Q psy2951 648 DSIL---------------LRTEEFYKD--NDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 648 ~~~~---------------~~~~~~~~~--~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~ 702 (1466)
..+. ..+.+.+.+ .+.+++++++|+++... ....++++++.++.+|.||-|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcc
Confidence 0000 001112222 14578999999988322 2335667788899999999999954
No 446
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.57 E-value=0.0003 Score=83.20 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=62.9
Q ss_pred eEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCCCCCCCCCc------cchh--------cccCcc--cccc------
Q psy2951 597 TFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFLPYDRVK------LSKQ--------LDIKAD--SILL------ 652 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~~~~~~~~~------~~~~--------~~~~~~--~~~~------ 652 (1466)
||+|||||+||+++|..|++. |++ |.++|+.+..+.+..+ +... ...... .+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~--V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~ 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR--IRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRK 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe--EEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhh
Confidence 699999999999999999987 777 8888886533321111 1100 000000 0000
Q ss_pred -----------cCHhH-hhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 653 -----------RTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 653 -----------~~~~~-~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+.+. ++..+..++++++|..+ +.+. +++++|.++.+|.||-|.|..+.
T Consensus 79 l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v-~~~~--v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 79 LKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL-DADG--VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred cCCCceEEEHHHHHHHHHHhhcccEEecCEEEEE-eCCE--EEECCCCEEEeeEEEECCCCCCC
Confidence 00111 12223346668778888 5443 55678899999999999997654
No 447
>PRK09126 hypothetical protein; Provisional
Probab=97.57 E-value=0.00022 Score=86.18 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=35.1
Q ss_pred hCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCCCc
Q psy2951 660 DNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 660 ~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~~~ 705 (1466)
..|++++.+++|+++... +...+.++++.++.+|.||.|.|.....
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 358999999999888322 2345666788899999999999965443
No 448
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.56 E-value=0.00023 Score=85.89 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+||+||||||+|+++|..|++.|.+ |+++|+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~--v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGAS--VALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCe--EEEEeCCC
Confidence 357999999999999999999999988 77777754
No 449
>PRK06185 hypothetical protein; Provisional
Probab=97.56 E-value=0.00029 Score=85.69 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+||+|||||++|+++|..|++.|++ |+++|+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~--v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD--VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc--EEEEecCC
Confidence 458999999999999999999999988 67777653
No 450
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.56 E-value=7.8e-05 Score=80.75 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=49.8
Q ss_pred hhhhhhcCCCCCCCccccce------e-------------e-------c-----CCEEEcCCCCceeecCC-CccccCCC
Q psy2951 976 RNIYAVGTKCSHYGAPLVKG------S-------------L-------G-----DGRVRCPWHGACFNIAT-GDIEDFPG 1023 (1466)
Q Consensus 976 g~~~a~~~~C~h~g~~l~~g------~-------------~-------~-----~~~~~cp~h~~~f~~~~-g~~~~~p~ 1023 (1466)
+.++|.+..|+|.||++..- . + . .+.+.||||+++||+.+ |+++..|+
T Consensus 176 ~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA 255 (321)
T TIGR03171 176 KSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPT 255 (321)
T ss_pred CCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCC
Confidence 45788899999999977210 0 0 0 14899999999999988 58999999
Q ss_pred CCCCCeEEEEEEcC
Q psy2951 1024 MDSLPCYKVTIQND 1037 (1466)
Q Consensus 1024 ~~~l~~~~v~~~~~ 1037 (1466)
..+|+.++++++.+
T Consensus 256 ~rpLp~i~l~~d~~ 269 (321)
T TIGR03171 256 VRPLPAVILEWDSS 269 (321)
T ss_pred CCCCCcceEEEeCC
Confidence 99999999999654
No 451
>PRK09126 hypothetical protein; Provisional
Probab=97.56 E-value=0.00029 Score=85.13 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
++||+||||||||+++|..|++.|+++.|+|....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999886553
No 452
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.55 E-value=0.00021 Score=86.31 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------------------------------------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP------------------------------------------- 633 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~------------------------------------------- 633 (1466)
||+||||||||+++|+.|++.|++ |+++|+.+...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~--v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK--IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE--EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Q ss_pred -------------CCCCccchhcccCcccccccCHhHhhhCC-cEEEEceEEEEe-ccccccEEEccCCCEEecCEEEEc
Q psy2951 634 -------------YDRVKLSKQLDIKADSILLRTEEFYKDND-IHVIKGKKIISD-SELNEKKIKLQDGTSIDFTKIYLA 698 (1466)
Q Consensus 634 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~~~~~~~v~~i-~~~~~~~v~~~~~~~~~~d~lviA 698 (1466)
................+...+.+.+.+.+ ++++.+++|+.+ .+.....+.++++.++.+|.||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEe
Q ss_pred CCCC
Q psy2951 699 TGSS 702 (1466)
Q Consensus 699 tG~~ 702 (1466)
.|..
T Consensus 159 dG~~ 162 (385)
T TIGR01988 159 DGAN 162 (385)
T ss_pred CCCC
No 453
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.54 E-value=0.00046 Score=85.28 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc--CCC--cEEeccEEEEeecc-ccCccccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGT-VLNTNYLD 288 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~Vi~a~G~-~p~~~~l~ 288 (1466)
..+...+.+.+++.|++++.+++++++..+ ++++..+.. .++ ..+.++.||+|+|- ..|.+++.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 556777888888999999999999998764 356666654 233 46789999999984 44555543
No 454
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.53 E-value=0.00052 Score=85.08 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc--CCC--CeeecCEEEEeec-cccCcccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIG-TVLNTNYL 1310 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l--~~g--~~i~~D~vv~a~G-~~p~~~~~ 1310 (1466)
+..+.+.|.+.+++.|+++++++.++++. .+++++..|.+ .++ .++.+|.||+|+| +..|.+++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~-~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKIT-EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEE-ecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 45677788888899999999999999998 55677766665 343 3689999999998 55554443
No 455
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.53 E-value=0.00041 Score=86.67 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
..+.+.+.+.+++.|++++.++.|++|... ++++..|.+.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 467788888899999999999999999843 456667888899899999999998753
No 456
>KOG2820|consensus
Probab=97.52 E-value=0.00028 Score=76.60 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=37.9
Q ss_pred HhHhhhCCcEEEEceEEEEec----cccccEEEccCCCEEecCEEEEcCCC
Q psy2951 655 EEFYKDNDIHVIKGKKIISDS----ELNEKKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 655 ~~~~~~~gv~~~~~~~v~~i~----~~~~~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
+..+++.|+.++.+++|..+. +.....|.+++|..+.++++|+++|+
T Consensus 160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 345667899999999998874 23455678888999999999999996
No 457
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.51 E-value=0.00076 Score=81.23 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 843 (1466)
..+...+.+.+++.|++++.+++|++++.. ++.+ .+.++++ ++.+|.||+|+|.... .+.+..+
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g 208 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG 208 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence 455677778888899999999999999843 3333 4666665 7999999999997533 3444433
No 458
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.51 E-value=0.00065 Score=69.43 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.8
Q ss_pred EEEcCchHHHHHHHHHHHcC---CCccEEEEcCCCC
Q psy2951 599 IVVGGGPSGATCVETLRQNG---FTGKLYFITDENF 631 (1466)
Q Consensus 599 vVIGgG~AGl~aA~~l~~~g---~~~~v~~~~~~~~ 631 (1466)
+||||||+|++++..|.++. ...+|+++|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 5678999999654
No 459
>PRK08013 oxidoreductase; Provisional
Probab=97.51 E-value=0.00029 Score=85.16 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=32.8
Q ss_pred CcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 662 DIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 662 gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
+++++.++++..+.. .+...+++.+++++++|.||-|.|...
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 799999999988722 233456667888999999999999643
No 460
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.51 E-value=0.00048 Score=82.71 Aligned_cols=106 Identities=20% Similarity=0.350 Sum_probs=68.7
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC-------CC-CCch-------------hhcc---------
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RV-KLSK-------------QLDI--------- 1116 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~-------~~-~l~~-------------~~~~--------- 1116 (1466)
.+|+|||||++|+++|..|++.|+ +|+|||+.+...+. +. .++. .+..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~--~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGR--SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL 81 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC--cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence 589999999999999999999999 99999987522111 10 0000 0000
Q ss_pred ----C--------ccccccc-------Chh----h---h-ccCCcEEEcCCeEEEeecCC--CCeEEecCCcEEecCeEE
Q psy2951 1117 ----K--------ADSILLR-------TEE----F---Y-KDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIY 1167 (1466)
Q Consensus 1117 ----~--------~~~~~~~-------~~~----~---~-~~~~v~~~~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lv 1167 (1466)
. ...+... ... + . ...+++++.+++|+++ +.+ ..+|++.+|.++.+|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~-~~~~~~~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADL-EFSAEGNRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEE-EEcCCeEEEEECCCCEEEeeEEE
Confidence 0 0000000 000 0 1 1136889999999998 543 336788899999999999
Q ss_pred EecCCCCC
Q psy2951 1168 LATGSSPR 1175 (1466)
Q Consensus 1168 lAtG~~~~ 1175 (1466)
.|.|....
T Consensus 161 gADG~~S~ 168 (384)
T PRK08849 161 GADGANSQ 168 (384)
T ss_pred EecCCCch
Confidence 99998443
No 461
>PLN02661 Putative thiazole synthesis
Probab=97.51 E-value=0.00032 Score=79.57 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred cccCCCCCCCcEEEECCchHHHHHHHHHHhc-CCCCcEEEEcCCC---------------------------CCCCCCCc
Q psy2951 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITDEN---------------------------FLPYDRVK 86 (1466)
Q Consensus 35 ~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~-g~~v~i~~~~~~~---------------------------~~~~~~~~ 86 (1466)
+..++....+||+|||||+||++||+.|++. |.++.|++..... ..+|.+..
T Consensus 84 ~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~d 163 (357)
T PLN02661 84 MTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQE 163 (357)
T ss_pred hhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCC
Q ss_pred cchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEec----------------CCcEEecCEEEEccCCC
Q psy2951 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ----------------DGTSIDFTKIYLATGSS 150 (1466)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~----------------~~~~~~~d~lviAtG~~ 150 (1466)
-.........-.........++.+++++.++.+......++...-+. +...+.++++|+|||..
T Consensus 164 gy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 164 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred CeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Q ss_pred C
Q psy2951 151 P 151 (1466)
Q Consensus 151 ~ 151 (1466)
.
T Consensus 244 g 244 (357)
T PLN02661 244 G 244 (357)
T ss_pred C
No 462
>PRK11445 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.00031 Score=83.00 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
++||+||||||||+++|+.|++. ++ |+++|+.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~--V~liE~~~ 33 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MK--VIAIDKKH 33 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CC--EEEEECCC
Confidence 47999999999999999999998 76 77777654
No 463
>KOG1671|consensus
Probab=97.50 E-value=9.4e-05 Score=73.10 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=43.9
Q ss_pred eeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC
Q psy2951 502 STTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM 553 (1466)
Q Consensus 502 ~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~ 553 (1466)
..+-+.+.+...|+|.||-..++..+.+.+.|||||+.||.. |++..+|+-
T Consensus 141 vk~~ewl~~igVCThLGCVp~~~AGd~gg~~CPCHGSHYdas-GRIrkGPAP 191 (210)
T KOG1671|consen 141 VKKPEWLVVIGVCTHLGCVPIANAGDYGGYYCPCHGSHYDAS-GRIRKGPAP 191 (210)
T ss_pred ccCcceEEEEeeeccccccccccccccCceeccccccccccc-CceecCCCC
Confidence 345567888899999999999888887899999999999996 999888764
No 464
>PRK06185 hypothetical protein; Provisional
Probab=97.49 E-value=0.00032 Score=85.24 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
...++||+|||||++|+++|..|++.|+++.|+|...
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456899999999999999999999999999987653
No 465
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.48 E-value=0.00014 Score=61.91 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=29.2
Q ss_pred EECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1071 IVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
|||||++||++|..|++.|+ +|+|+|+.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~--~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY--RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS--EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC--cEEEEecCcccC
Confidence 89999999999999999998 999999998765
No 466
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.48 E-value=0.00035 Score=89.93 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
+..+...+.+.+++ |++++.+++|++++ ..++.. .|.+.+|..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~-~~~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLE-REDDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEE-EeCCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 45677778888888 99999999999997 333344 477888877899999999997654
No 467
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.47 E-value=0.00042 Score=87.06 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
...++|+||||||+|+++|..|++.|.+ |+++|+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~--v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVR--VLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecCC
Confidence 4568999999999999999999999988 66666653
No 468
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.47 E-value=0.00046 Score=82.10 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=57.7
Q ss_pred cEEEECCchHHHHHHHHH--HhcCCCCcEEEEcCCCCCCCCC------Cccc--hhc---ccC-------c---------
Q psy2951 45 TFIVVGGGPSGATCVETL--RQNGFTGKLYFITDENFLPYDR------VKLS--KQL---DIK-------A--------- 95 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l--~~~g~~v~i~~~~~~~~~~~~~------~~~~--~~~---~~~-------~--------- 95 (1466)
||+||||||||+++|.+| ++.|.+|.|++...+...+-.+ ..+. ... ... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 5566665554433322001111 0110 000 000 0
Q ss_pred ------ccccccChhhhhcCCeEEEeCceEEEecc-ccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 96 ------DSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 96 ------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
..+...+.+.+...++.+ .+..+..... .....+++++|.+++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~-~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIR-LNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEE-EccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 000111122222234444 4444443322 2335778889999999999999995543
No 469
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.46 E-value=0.00027 Score=74.29 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=28.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
.+|+|||+|+||++||+.|+..|++ |+++||.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~--vtV~eKg 33 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE--VTVFEKG 33 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE--EEEEEcC
Confidence 4699999999999999999999999 6666665
No 470
>PLN02612 phytoene desaturase
Probab=97.45 E-value=0.0016 Score=81.66 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
..+.+.+.+.+++.|++++++++|++|+..+++.+..+.+.+|+++.+|.||++++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 45667788888889999999999999985455666778888999999999999875
No 471
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.45 E-value=0.00048 Score=86.80 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+...+|+||||||+|+++|..|+++|.+ |+++|+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~--v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVP--VVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCc--EEEEeCCC
Confidence 3568999999999999999999999988 66777654
No 472
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.45 E-value=0.0004 Score=83.05 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+.||+||||||+|+++|..|++.|++ |+++|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~--v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIK--TTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCe--EEEecCC
Confidence 36899999999999999999999998 6667653
No 473
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.44 E-value=0.0012 Score=79.27 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 281 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~ 281 (1466)
..+...+.+.+.+.|+++++++.|+++..++ +. ..+.++++ ++.+|.||+|+|.-
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DG-VTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-Ce-EEEEeCCC-EEEeeEEEEecCcc
Confidence 4556666777778899999999999998754 23 34666666 79999999999964
No 474
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.44 E-value=0.00038 Score=83.65 Aligned_cols=33 Identities=39% Similarity=0.518 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
+||+||||||||++||+.|++.|++|.|+|...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999998887543
No 475
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.43 E-value=0.00045 Score=83.49 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=28.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..+|+|||||+||+++|..|++.|++ |+++|+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~--V~i~E~~ 34 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA--VTIIEKA 34 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc--EEEEecC
Confidence 37899999999999999999999998 5556654
No 476
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.42 E-value=0.0015 Score=79.81 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---cCCC--CeeecCEEEEeeccccCccccccCCce
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
+..+...|.+.++++|++++.+++|++++..+++.+ .+. ..+| .++.+|.||+|+|.... .+++..|+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 466788888888999999999999999983233322 233 2334 36899999999996543 455555554
No 477
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.42 E-value=0.0004 Score=84.12 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 661 NDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 661 ~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.|++++.+++++.+... +...++++++..+.+|.||.|.|...
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 47999999989887322 23456677788899999999999654
No 478
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.41 E-value=0.00087 Score=82.59 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC-----eeecCEEEEeecc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIVGIGT 1303 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~-----~i~~D~vv~a~G~ 1303 (1466)
..+.+.+.+.+++.|+++++++.|++|+..+++++..|++.+|+ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45667788888889999999999999974455667778887765 7899999999764
No 479
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.41 E-value=0.00096 Score=80.20 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
+..+...+.+.+.+.|++++.+++|+++. ..++ ...|.+++| ++.+|.||+|+|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~-~~~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIE-ADGD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEE-eeCC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 35566667777888999999999999998 3333 345777777 789999999999753
No 480
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.41 E-value=0.0012 Score=81.52 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc-----EEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~ 832 (1466)
..+.+.+.+.+++.|.++++++.|++|...+++.+..+.+.+++ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 44567778888889999999999999975555667677776655 7899999999854
No 481
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.40 E-value=0.00061 Score=82.09 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=29.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..||+||||||+|+++|..|++.|++ |+++|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~--v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID--SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC--EEEEEcCC
Confidence 47899999999999999999999998 66666553
No 482
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.40 E-value=0.0013 Score=81.16 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC--CC--CeeecCEEEEeecc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--NG--TTIPADLVIVGIGT 1303 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~--~g--~~i~~D~vv~a~G~ 1303 (1466)
+..+...|.+.+++.|++++.+++++++. .+++++..|... +| .++.++.||+|+|-
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~-~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALE-LDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEE-ecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 35677778888899999999999999998 456777777663 33 36799999999984
No 483
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.40 E-value=0.00033 Score=84.83 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhc---CCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQN---GFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~---g~~v~i~~~~ 75 (1466)
.++||+||||||||+++|+.|++. |.++.|+|..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999999999999999999998 9999998863
No 484
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.40 E-value=0.00086 Score=81.75 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC---CCC--eeecCEEEEeeccccC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---NGT--TIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~---~g~--~i~~D~vv~a~G~~p~ 1306 (1466)
+..+...+.+.+++.|++++.++.++++. .+++++.+|... +|+ ++.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li-~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLI-TEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEE-EETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEE-EeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 46788889999999999999999999998 467798888776 454 5789999999996554
No 485
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.40 E-value=0.0006 Score=85.64 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
+..+||+||||||+|+++|..|++.|.++.|+|....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999886543
No 486
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.39 E-value=0.0025 Score=76.17 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+.+. |++++.+++|.+++.+ .+.+.+| ++.+|.||+|+|...+
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~------~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC------eEEeCCC-cEEeCEEEECCCCChh
Confidence 44556667766665 9999999999999732 4666666 4789999999997544
No 487
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.39 E-value=0.0012 Score=80.17 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEE---cCCCC--eeecCEEEEeeccccCccccccCCce
Q psy2951 1247 KEVGERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1247 ~~~~~~l~~~~~-~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
..+.+.|.+.+. ..|++++++++|+.+...+++.. .+. ..+|+ ++.+|.||+|.|.... .+++.+|+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 456667767665 45999999999999973324332 233 34453 6899999999997664 566666554
No 488
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.39 E-value=0.00077 Score=83.56 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
...||||||+|.||++||+.+++.|.+ |+++|+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~--VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMN--PVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCC--EEEEECCCC
Confidence 468999999999999999999999987 788887654
No 489
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.38 E-value=0.0029 Score=75.67 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1246 GKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
+..+...|.+.++++ |++++.+++|.+++ . + .|.+.+| ++.||.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~-~-~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVE-T-G----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEe-c-C----eEEeCCC-cEEeCEEEECCCCChh
Confidence 345667777777765 99999999999997 2 2 4777777 4789999999997543
No 490
>PRK07236 hypothetical protein; Provisional
Probab=97.38 E-value=0.00073 Score=81.32 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=72.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-----cccHHHHHHHH-------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-----SLGKEVGERIT------------------------- 1254 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-----~~~~~~~~~l~------------------------- 1254 (1466)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.++.. .+.+...+.|.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 478999999999999999999999999999988643211 11222222222
Q ss_pred ------------------HHHHh--CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCc
Q psy2951 1255 ------------------KLFES--KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1255 ------------------~~~~~--~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~ 1307 (1466)
+.+.+ .+++++.++++++++ .++ ....|.+.+|+++.+|+||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~-~~~-~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFE-QDG-DRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEE-ecC-CeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 135689999999998 333 3355889999999999999999976654
No 491
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.38 E-value=0.0012 Score=80.51 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHh----cC--cEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCce
Q psy2951 776 KEVGERITKLFES----KG--VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE 845 (1466)
Q Consensus 776 ~~~~~~~~~~l~~----~g--v~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 845 (1466)
..+...+.+.+++ .| ++++++++|+.++.. ++....|.+++| ++.+|.||+|+|.-.. .+++.+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 3566777777777 77 889999999999853 234556777776 6999999999996543 456666653
No 492
>PRK06126 hypothetical protein; Provisional
Probab=97.37 E-value=0.00069 Score=85.53 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+..++|+||||||+||++|..|+++|++ |+++|+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~--v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD--SILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc--EEEEeCC
Confidence 3468999999999999999999999998 6666665
No 493
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.36 E-value=0.002 Score=78.83 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEE---cCCCC--eeecCEEEEeeccccCccccccCCce
Q psy2951 1247 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~g-v~~~~~~~v~~i~~~~~g~~~~v~---l~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
..+.+.|.+.+++.| ++++++++|++++..+++.+ .|. +.+|. ++.||.||+|+|.... .+++..|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 567778888888886 89999999999984344332 233 33464 6899999999997543 455555554
No 494
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.36 E-value=0.00078 Score=86.73 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++ |++++.++.|++++.. ++.+ .+.++++..+.+|.||+|+|....
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 4666777777778 9999999999999743 3334 477778877899999999997543
No 495
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.36 E-value=0.00057 Score=82.82 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--------------------------------------
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------------------------------------- 1104 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~-------------------------------------- 1104 (1466)
++...+|+|||||++|+++|..|++.|+ +|+|||+.+..+
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~--~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 78 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDL--RIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPY 78 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCC--EEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcc
Q ss_pred ---------------CCCCCCchhhc---cCcccccccChhhhccC-CcEEEcCCeEEEeecCCCC--eEEecCCcEEec
Q psy2951 1105 ---------------YDRVKLSKQLD---IKADSILLRTEEFYKDN-DIHVIKGKKIISDSELNEK--KIKLQDGTSIDF 1163 (1466)
Q Consensus 1105 ---------------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~y 1163 (1466)
|+......... .....+.....+...+. +++++.+++|+.+ +.... .|.+++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i-~~~~~~~~v~~~~g~~~~a 157 (405)
T PRK08850 79 IAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSI-AVGESEAWLTLDNGQALTA 157 (405)
T ss_pred cEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEE-EeeCCeEEEEECCCCEEEe
Q ss_pred CeEEEecCCCCC
Q psy2951 1164 TKIYLATGSSPR 1175 (1466)
Q Consensus 1164 d~lvlAtG~~~~ 1175 (1466)
|.||.|.|....
T Consensus 158 ~lvIgADG~~S~ 169 (405)
T PRK08850 158 KLVVGADGANSW 169 (405)
T ss_pred CEEEEeCCCCCh
No 496
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.35 E-value=0.0029 Score=77.52 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcC-cEEEccceEEEEEecCCCceEEEE---CCCCc--EEecCEEEEccccccCccccccCCce
Q psy2951 776 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVE 845 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 845 (1466)
..+.+.+.+.+++.| ++++.+++|++++..+++.+ .+. +.+|+ ++.+|.||+|.|.-.. .+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 456677778888876 99999999999985444433 233 33453 6899999999997543 456655554
No 497
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00019 Score=83.14 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=65.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-----CCC-------------------------------CCCCc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----FLP-------------------------------YDRVK 86 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-----~~~-------------------------------~~~~~ 86 (1466)
.+||+|||||.||..||...++.|.++.++...-+. +.| |....
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 589999999999999999999999998777554432 111 00000
Q ss_pred cchhc--c---cCcc--cccccChhhhh-cCCeEEEeCceEEEeccccc--cEEEecCCcEEecCEEEEccCC
Q psy2951 87 LSKQL--D---IKAD--SILLRTEEFYK-DNDIHVIKGKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGS 149 (1466)
Q Consensus 87 ~~~~~--~---~~~~--~~~~~~~~~~~-~~~v~~~~~~~v~~~~~~~~--~~v~~~~~~~~~~d~lviAtG~ 149 (1466)
.++.- . ...+ .+.......++ ..|+.++++...-...+.+. .-|.+.+|..+.++.||++||.
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00000 0 0000 01111222222 45888888876543332232 5577889999999999999996
No 498
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.32 E-value=0.0024 Score=69.61 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=43.5
Q ss_pred cCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1239 ~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
+|.-+.+......+++++-..-+-++.+++.|..+....+|. .+...||++-.+|.||+|+-
T Consensus 209 rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv--~l~~~~G~s~rFD~vViAth 270 (447)
T COG2907 209 RPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGV--VLVNADGESRRFDAVVIATH 270 (447)
T ss_pred CCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCce--EEecCCCCccccceeeeecC
Confidence 444445555556667776666665689999999997544542 35556799889999999876
No 499
>PRK11445 putative oxidoreductase; Provisional
Probab=97.30 E-value=0.00065 Score=80.33 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
++||+||||||||+++|..|++. ++|.|+|..+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 47999999999999999999998 8888877544
No 500
>PRK06996 hypothetical protein; Provisional
Probab=97.30 E-value=0.00073 Score=81.58 Aligned_cols=111 Identities=12% Similarity=0.160 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCC-C-ccEEEEcCCCCCC-C----------------CCCc-------------
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGF-T-GKLYFITDENFLP-Y----------------DRVK------------- 638 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~-~-~~v~~~~~~~~~~-~----------------~~~~------------- 638 (1466)
..+..++|+||||||+|+++|..|++.|. + ..|+++|+.+... . ....
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 34456899999999999999999999984 2 4478888753110 0 0000
Q ss_pred cc--hhc-----c------------cCcccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCC---CEEecCEE
Q psy2951 639 LS--KQL-----D------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDG---TSIDFTKI 695 (1466)
Q Consensus 639 ~~--~~~-----~------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~---~~~~~d~l 695 (1466)
.. ... . .+...+...+.+.+.+.+++++.++++..+.+. +..++++.++ +++++|.|
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIA 166 (398)
T ss_pred EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEE
Confidence 00 000 0 000011111223345568999999988877222 2334555543 58999999
Q ss_pred EEcCCC
Q psy2951 696 YLATGS 701 (1466)
Q Consensus 696 viAtG~ 701 (1466)
|-|.|.
T Consensus 167 IgADG~ 172 (398)
T PRK06996 167 VQAEGG 172 (398)
T ss_pred EECCCC
Confidence 999994
Done!