RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2951
(1466 letters)
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 181 bits (460), Expect = 1e-50
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD------SILL 100
+++GGGP+G L + G K+ I E Y+R L K+L ++ L
Sbjct: 3 VIIGGGPAGLAAAIRLARLG--LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 101 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQA 157
EE YK+ + V+ G +++ D + EK + L+D G I + K+ +ATG+ PR
Sbjct: 61 LPEEVYKEFGVEVLLGTEVV-DIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP-GI 118
Query: 158 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 217
GV V LR V D++ I + VVV+G +IG+E AA A K VTVV R
Sbjct: 119 PGVE-VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
Query: 218 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 277
+ + + KL + V+ V K V L +G + AD+V+V
Sbjct: 178 LARADDEISAALLEKLEKLLLGVTVLLVVVVV-VKVGDGKVVEVKLGDGEELDADVVLVA 236
Query: 278 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
IG NT L+ GVEL+ + +VV+EYL T+VPG+YA GD+A
Sbjct: 237 IGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVA 279
Score = 181 bits (460), Expect = 1e-50
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD------SILL 652
+++GGGP+G L + G K+ I E Y+R L K+L ++ L
Sbjct: 3 VIIGGGPAGLAAAIRLARLG--LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 653 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQA 709
EE YK+ + V+ G +++ D + EK + L+D G I + K+ +ATG+ PR
Sbjct: 61 LPEEVYKEFGVEVLLGTEVV-DIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP-GI 118
Query: 710 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769
GV V LR V D++ I + VVV+G +IG+E AA A K VTVV R
Sbjct: 119 PGVE-VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
Query: 770 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829
+ + + KL + V+ V K V L +G + AD+V+V
Sbjct: 178 LARADDEISAALLEKLEKLLLGVTVLLVVVVV-VKVGDGKVVEVKLGDGEELDADVVLVA 236
Query: 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
IG NT L+ GVEL+ + +VV+EYL T+VPG+YA GD+A
Sbjct: 237 IGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVA 279
Score = 181 bits (460), Expect = 1e-50
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD------SILL 1123
+++GGGP+G L + G K+ I E Y+R L K+L ++ L
Sbjct: 3 VIIGGGPAGLAAAIRLARLG--LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 1124 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQA 1180
EE YK+ + V+ G +++ D + EK + L+D G I + K+ +ATG+ PR
Sbjct: 61 LPEEVYKEFGVEVLLGTEVV-DIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP-GI 118
Query: 1181 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240
GV V LR V D++ I + VVV+G +IG+E AA A K VTVV R
Sbjct: 119 PGVE-VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
Query: 1241 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300
+ + + KL + V+ V K V L +G + AD+V+V
Sbjct: 178 LARADDEISAALLEKLEKLLLGVTVLLVVVVV-VKVGDGKVVEVKLGDGEELDADVVLVA 236
Query: 1301 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
IG NT L+ GVEL+ + +VV+EYL T+VPG+YA GD+A
Sbjct: 237 IGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVA 279
Score = 42.7 bits (101), Expect = 8e-04
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVG--------RGAVPFQESLGKEVGERIT---- 231
+VV+IG G+ AA A V ++ RG +P + L EV E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP--KKLLLEVAEGLELAIG 58
Query: 232 -----KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 286
++++ GV+ ++ V ++ EK V +++ G I D +I+ G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEK-TVVLKDVETGREITYDKLIIATGARPRIPG 117
Query: 287 LDGKGVELN 295
+ G V
Sbjct: 118 IPGVEVATL 126
Score = 42.7 bits (101), Expect = 8e-04
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVG--------RGAVPFQESLGKEVGERIT---- 783
+VV+IG G+ AA A V ++ RG +P + L EV E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP--KKLLLEVAEGLELAIG 58
Query: 784 -----KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 838
++++ GV+ ++ V ++ EK V +++ G I D +I+ G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEK-TVVLKDVETGREITYDKLIIATGARPRIPG 117
Query: 839 LDGKGVELN 847
+ G V
Sbjct: 118 IPGVEVATL 126
Score = 42.7 bits (101), Expect = 8e-04
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVG--------RGAVPFQESLGKEVGERIT---- 1254
+VV+IG G+ AA A V ++ RG +P + L EV E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP--KKLLLEVAEGLELAIG 58
Query: 1255 -----KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 1309
++++ GV+ ++ V ++ EK V +++ G I D +I+ G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEK-TVVLKDVETGREITYDKLIIATGARPRIPG 117
Query: 1310 LDGKGVELN 1318
+ G V
Sbjct: 118 IPGVEVATL 126
Score = 35.4 bits (82), Expect = 0.20
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEE 104
+VVGGG G L + G E + R +L + D + + LL E
Sbjct: 144 RVVVVGGGYIGLELAAALAKLG---------KEVTVVERRDRLLARADDEISAALLEKLE 194
Query: 105 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
++ ++ + ++KL DG +D + +A G P T
Sbjct: 195 KLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNT 243
Score = 35.4 bits (82), Expect = 0.20
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEE 656
+VVGGG G L + G E + R +L + D + + LL E
Sbjct: 144 RVVVVGGGYIGLELAAALAKLG---------KEVTVVERRDRLLARADDEISAALLEKLE 194
Query: 657 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
++ ++ + ++KL DG +D + +A G P T
Sbjct: 195 KLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNT 243
Score = 35.4 bits (82), Expect = 0.20
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEE 1127
+VVGGG G L + G E + R +L + D + + LL E
Sbjct: 144 RVVVVGGGYIGLELAAALAKLG---------KEVTVVERRDRLLARADDEISAALLEKLE 194
Query: 1128 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
++ ++ + ++KL DG +D + +A G P T
Sbjct: 195 KLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNT 243
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 163 bits (414), Expect = 3e-43
Identities = 102/342 (29%), Positives = 147/342 (42%), Gaps = 11/342 (3%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 103
++VGGG +G + TLR+ ++ I E Y R LS I + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 104 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162
F + I V G ++ S D E K + L DG I++ + LATG+ PR +D
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPRPPPISDW-EG 116
Query: 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222
V LR EDA + P +VVV+G+ IG+EAA A + K VT++ + L
Sbjct: 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176
Query: 223 GKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVIVGIGTV 281
EV E + +L E GV+ ++ V E K V +G I ADLVI+G G
Sbjct: 177 DPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
Query: 282 LNTNYLDGKGVELNGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 339
N + L AV+V+E T P VYA GD+A P + K I + +
Sbjct: 237 PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAI 295
Query: 340 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 381
A GRIAA N+ + + + + G G
Sbjct: 296 AVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEG 337
Score = 163 bits (414), Expect = 3e-43
Identities = 102/342 (29%), Positives = 147/342 (42%), Gaps = 11/342 (3%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 655
++VGGG +G + TLR+ ++ I E Y R LS I + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 656 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
F + I V G ++ S D E K + L DG I++ + LATG+ PR +D
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPRPPPISDW-EG 116
Query: 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 774
V LR EDA + P +VVV+G+ IG+EAA A + K VT++ + L
Sbjct: 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176
Query: 775 GKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVIVGIGTV 833
EV E + +L E GV+ ++ V E K V +G I ADLVI+G G
Sbjct: 177 DPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
Query: 834 LNTNYLDGKGVELNGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 891
N + L AV+V+E T P VYA GD+A P + K I + +
Sbjct: 237 PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAI 295
Query: 892 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 933
A GRIAA N+ + + + + G G
Sbjct: 296 AVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEG 337
Score = 163 bits (414), Expect = 3e-43
Identities = 102/342 (29%), Positives = 147/342 (42%), Gaps = 11/342 (3%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 1126
++VGGG +G + TLR+ ++ I E Y R LS I + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 1127 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 1185
F + I V G ++ S D E K + L DG I++ + LATG+ PR +D
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPRPPPISDW-EG 116
Query: 1186 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 1245
V LR EDA + P +VVV+G+ IG+EAA A + K VT++ + L
Sbjct: 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176
Query: 1246 GKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304
EV E + +L E GV+ ++ V E K V +G I ADLVI+G G
Sbjct: 177 DPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
Query: 1305 LNTNYLDGKGVELNGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 1362
N + L AV+V+E T P VYA GD+A P + K I + +
Sbjct: 237 PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAI 295
Query: 1363 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 1404
A GRIAA N+ + + + + G G
Sbjct: 296 AVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEG 337
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 161 bits (408), Expect = 1e-42
Identities = 100/363 (27%), Positives = 175/363 (48%), Gaps = 30/363 (8%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSIL--LRT 102
T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP 64
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162
++++N++H+ G I + +++ L +G S + ++++ATG++ R + D + +
Sbjct: 65 ANWWQENNVHLHSG-VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGE 123
Query: 163 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV-------GRG 214
F LR DA + + PE +VV++G+ IG+E AA + VTV+ GR
Sbjct: 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
Query: 215 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 274
A P V + + + GV+ ++ + EK ++T L +G T+ AD+V
Sbjct: 184 APPP-------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVV 233
Query: 275 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA--PLHSFYNKNA 332
I GIG N ++ +V++E T P ++AGGD+A + + +
Sbjct: 234 IYGIGISANDQLAREANLDTAN--GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCES 291
Query: 333 SIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE 392
++ A +IAA M+ L P+FW+ + +F G G + G+ E
Sbjct: 292 ----WENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWL-CRGNPE 346
Query: 393 ALK 395
K
Sbjct: 347 TQK 349
Score = 161 bits (408), Expect = 1e-42
Identities = 100/363 (27%), Positives = 175/363 (48%), Gaps = 30/363 (8%)
Query: 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSIL--LRT 654
T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP 64
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
++++N++H+ G I + +++ L +G S + ++++ATG++ R + D + +
Sbjct: 65 ANWWQENNVHLHSG-VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGE 123
Query: 715 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV-------GRG 766
F LR DA + + PE +VV++G+ IG+E AA + VTV+ GR
Sbjct: 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
Query: 767 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826
A P V + + + GV+ ++ + EK ++T L +G T+ AD+V
Sbjct: 184 APPP-------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVV 233
Query: 827 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA--PLHSFYNKNA 884
I GIG N ++ +V++E T P ++AGGD+A + + +
Sbjct: 234 IYGIGISANDQLAREANLDTAN--GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCES 291
Query: 885 SIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE 944
++ A +IAA M+ L P+FW+ + +F G G + G+ E
Sbjct: 292 ----WENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWL-CRGNPE 346
Query: 945 ALK 947
K
Sbjct: 347 TQK 349
Score = 161 bits (408), Expect = 1e-42
Identities = 100/363 (27%), Positives = 175/363 (48%), Gaps = 30/363 (8%)
Query: 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSIL--LRT 1125
T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP 64
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 1185
++++N++H+ G I + +++ L +G S + ++++ATG++ R + D + +
Sbjct: 65 ANWWQENNVHLHSG-VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGE 123
Query: 1186 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV-------GRG 1237
F LR DA + + PE +VV++G+ IG+E AA + VTV+ GR
Sbjct: 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
Query: 1238 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297
A P V + + + GV+ ++ + EK ++T L +G T+ AD+V
Sbjct: 184 APPP-------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVV 233
Query: 1298 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA--PLHSFYNKNA 1355
I GIG N ++ +V++E T P ++AGGD+A + + +
Sbjct: 234 IYGIGISANDQLAREANLDTAN--GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCES 291
Query: 1356 SIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE 1415
++ A +IAA M+ L P+FW+ + +F G G + G+ E
Sbjct: 292 ----WENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWL-CRGNPE 346
Query: 1416 ALK 1418
K
Sbjct: 347 TQK 349
>gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like)
family, N-terminal Rieske domain; members of this family
show similarity to human AIFL, containing an N-terminal
Rieske domain and a C-terminal pyridine
nucleotide-disulfide oxidoreductase domain (Pyr_redox).
The Rieske domain is a [2Fe-2S] cluster binding domain
involved in electron transfer. AIFL shares 35% homology
with human AIF (apoptosis-inducing factor), mainly in
the Pyr_redox domain. AIFL is predominantly localized to
the mitochondria. AIFL induces apoptosis in a
caspase-dependent manner.
Length = 95
Score = 132 bits (335), Expect = 2e-36
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
++A+G KC HYGAPL KG L DGR+RCPWHGACFN+ TGDIED P +DSLPCY+V +++
Sbjct: 32 EVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVED 91
Query: 566 D 566
Sbjct: 92 G 92
Score = 132 bits (335), Expect = 2e-36
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
++A+G KC HYGAPL KG L DGR+RCPWHGACFN+ TGDIED P +DSLPCY+V +++
Sbjct: 32 EVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVED 91
Query: 1037 D 1037
Sbjct: 92 G 92
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 133 bits (337), Expect = 2e-31
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQL--DIKADSILLR 101
+++G G +G +E L ++ LY IT +E Y+R+ LS L + A+ I L
Sbjct: 7 VIIGNGMAGHRTIEELLESA--PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLN 64
Query: 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
++Y++N I + G+K+I + K + G ++ + K+ +ATGS P I G +
Sbjct: 65 RNDWYEENGITLYTGEKVIQ-IDRANKVVTTDAGRTVSYDKLIIATGSYP-FILPIPGSD 122
Query: 162 K--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 219
VF RT++D + + VVIG +G+EAA VTVV +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME 182
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
L + G + + E G+K +++ N +K V +GT IPADLV++ +G
Sbjct: 183 RQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGTEIPADLVVMAVG 240
Query: 280 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
N G+ +N + +VVN+Y++T+ P +YA G+ A
Sbjct: 241 IRPNDELAKEAGLAVN--RGIVVNDYMQTSDPDIYAVGECA 279
Score = 133 bits (337), Expect = 2e-31
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQL--DIKADSILLR 653
+++G G +G +E L ++ LY IT +E Y+R+ LS L + A+ I L
Sbjct: 7 VIIGNGMAGHRTIEELLESA--PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLN 64
Query: 654 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713
++Y++N I + G+K+I + K + G ++ + K+ +ATGS P I G +
Sbjct: 65 RNDWYEENGITLYTGEKVIQ-IDRANKVVTTDAGRTVSYDKLIIATGSYP-FILPIPGSD 122
Query: 714 K--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 771
VF RT++D + + VVIG +G+EAA VTVV +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME 182
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
L + G + + E G+K +++ N +K V +GT IPADLV++ +G
Sbjct: 183 RQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGTEIPADLVVMAVG 240
Query: 832 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
N G+ +N + +VVN+Y++T+ P +YA G+ A
Sbjct: 241 IRPNDELAKEAGLAVN--RGIVVNDYMQTSDPDIYAVGECA 279
Score = 133 bits (337), Expect = 2e-31
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQL--DIKADSILLR 1124
+++G G +G +E L ++ LY IT +E Y+R+ LS L + A+ I L
Sbjct: 7 VIIGNGMAGHRTIEELLESA--PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLN 64
Query: 1125 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 1184
++Y++N I + G+K+I + K + G ++ + K+ +ATGS P I G +
Sbjct: 65 RNDWYEENGITLYTGEKVIQ-IDRANKVVTTDAGRTVSYDKLIIATGSYP-FILPIPGSD 122
Query: 1185 K--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 1242
VF RT++D + + VVIG +G+EAA VTVV +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME 182
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
L + G + + E G+K +++ N +K V +GT IPADLV++ +G
Sbjct: 183 RQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGTEIPADLVVMAVG 240
Query: 1303 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
N G+ +N + +VVN+Y++T+ P +YA G+ A
Sbjct: 241 IRPNDELAKEAGLAVN--RGIVVNDYMQTSDPDIYAVGECA 279
Score = 31.9 bits (73), Expect = 2.8
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 542 IATGD---IEDFPGMDSLPCYKV-TIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDT 597
IATG I PG D + TI DD V+A D +NKK+
Sbjct: 107 IATGSYPFILPIPGSDLPGVFVYRTI--DD---VEAMLDCARNKKKA------------- 148
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF 657
+V+GGG G L+ G +T + P + +QLD + LLR +
Sbjct: 149 -VVIGGGLLGLEAARGLKDLGME-----VTVVHIAPT---LMERQLD-RTAGRLLRRKLE 198
Query: 658 YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
+ + K + I + E ++ DGT I + +A G P
Sbjct: 199 DLGIKVLLEKNTEEIVGEDKVE-GVRFADGTEIPADLVVMAVGIRPND 245
Score = 31.9 bits (73), Expect = 2.8
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 1013 IATGD---IEDFPGMDSLPCYKV-TIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDT 1068
IATG I PG D + TI DD V+A D +NKK+
Sbjct: 107 IATGSYPFILPIPGSDLPGVFVYRTI--DD---VEAMLDCARNKKKA------------- 148
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF 1128
+V+GGG G L+ G +T + P + +QLD + LLR +
Sbjct: 149 -VVIGGGLLGLEAARGLKDLGME-----VTVVHIAPT---LMERQLD-RTAGRLLRRKLE 198
Query: 1129 YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
+ + K + I + E ++ DGT I + +A G P
Sbjct: 199 DLGIKVLLEKNTEEIVGEDKVE-GVRFADGTEIPADLVVMAVGIRPND 245
Score = 31.5 bits (72), Expect = 4.6
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 24/135 (17%)
Query: 19 VQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78
V+A D +NKK+ +V+GGG G L+ G +T +
Sbjct: 135 VEAMLDCARNKKKA--------------VVIGGGLLGLEAARGLKDLGME-----VTVVH 175
Query: 79 FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSI 138
P + +QLD + LLR + + + K + I + E ++ DGT I
Sbjct: 176 IAPT---LMERQLD-RTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVE-GVRFADGTEI 230
Query: 139 DFTKIYLATGSSPRT 153
+ +A G P
Sbjct: 231 PADLVVMAVGIRPND 245
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 123 bits (312), Expect = 1e-29
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 38/273 (13%)
Query: 103 EEFYKDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
E K N + VI+G+ + + + ++ +D +I I +ATGS PR G++
Sbjct: 101 EGLLKKNGVDVIRGEARFVDPHTV---EVTGEDKETITADNIIIATGSRPRIPPGP-GID 156
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA-AFCASKVKSVTVVGRGA--VPF 218
L DA + P+S +V++G +IG+E A F A K VTVV RG +P
Sbjct: 157 GARIL-DSSDALF-LLEL-PKS-LVIVGGGYIGLEFASVFAALGSK-VTVVERGDRILPG 211
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
++ E+ + +TK E GVK ++ V++ EK + + G TI AD V+V I
Sbjct: 212 ED---PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268
Query: 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 336
G NT+ L+ GVEL+ + + V++ + TNVPG+YA GD+ IG
Sbjct: 269 GRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDV--------------IGG 314
Query: 337 YQL---AQYHGRIAALNMVEKKTSLS---TIPF 363
L A GRIAA N+ K + IP
Sbjct: 315 PMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPS 347
Score = 123 bits (312), Expect = 1e-29
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 38/273 (13%)
Query: 655 EEFYKDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713
E K N + VI+G+ + + + ++ +D +I I +ATGS PR G++
Sbjct: 101 EGLLKKNGVDVIRGEARFVDPHTV---EVTGEDKETITADNIIIATGSRPRIPPGP-GID 156
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA-AFCASKVKSVTVVGRGA--VPF 770
L DA + P+S +V++G +IG+E A F A K VTVV RG +P
Sbjct: 157 GARIL-DSSDALF-LLEL-PKS-LVIVGGGYIGLEFASVFAALGSK-VTVVERGDRILPG 211
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
++ E+ + +TK E GVK ++ V++ EK + + G TI AD V+V I
Sbjct: 212 ED---PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268
Query: 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 888
G NT+ L+ GVEL+ + + V++ + TNVPG+YA GD+ IG
Sbjct: 269 GRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDV--------------IGG 314
Query: 889 YQL---AQYHGRIAALNMVEKKTSLS---TIPF 915
L A GRIAA N+ K + IP
Sbjct: 315 PMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPS 347
Score = 123 bits (312), Expect = 1e-29
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 38/273 (13%)
Query: 1126 EEFYKDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 1184
E K N + VI+G+ + + + ++ +D +I I +ATGS PR G++
Sbjct: 101 EGLLKKNGVDVIRGEARFVDPHTV---EVTGEDKETITADNIIIATGSRPRIPPGP-GID 156
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA-AFCASKVKSVTVVGRGA--VPF 1241
L DA + P+S +V++G +IG+E A F A K VTVV RG +P
Sbjct: 157 GARIL-DSSDALF-LLEL-PKS-LVIVGGGYIGLEFASVFAALGSK-VTVVERGDRILPG 211
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
++ E+ + +TK E GVK ++ V++ EK + + G TI AD V+V I
Sbjct: 212 ED---PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268
Query: 1302 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359
G NT+ L+ GVEL+ + + V++ + TNVPG+YA GD+ IG
Sbjct: 269 GRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDV--------------IGG 314
Query: 1360 YQL---AQYHGRIAALNMVEKKTSLS---TIPF 1386
L A GRIAA N+ K + IP
Sbjct: 315 PMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPS 347
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 116 bits (292), Expect = 5e-27
Identities = 93/364 (25%), Positives = 145/364 (39%), Gaps = 73/364 (20%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LP----------YDRVKL 87
IV+GGGP G Q G K+ + E +P YD +K
Sbjct: 5 IVIGGGPGGYVAAIRAAQLGL--KVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 88 SKQLDIKADSILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKK 129
+K L I+ +++ + E+ K N + VIKG+ D
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDP----GT 118
Query: 130 IKLQDGT---SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 186
+ + +++ I +ATGS PR++ + + T A + PES +V
Sbjct: 119 VSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI-TSTGA--LNLEEVPES-LV 174
Query: 187 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
+IG IG+E A+ AS VTV+ EV + + K + KGVK +
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVI-EMLDRILPGEDAEVSKVLQKALKKKGVKILTNTK 233
Query: 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNE 304
V++ EKN+ T+ + V+V +G NT L+ GVEL+ + +VV+E
Sbjct: 234 VTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDE 293
Query: 305 YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAA---LNMVEKKTSL 358
Y+ TNVPG+YA GD+ IG LA + G +AA
Sbjct: 294 YMRTNVPGIYAIGDV--------------IGGPMLAHVASHEGIVAAENIAGKEPAHIDY 339
Query: 359 STIP 362
+P
Sbjct: 340 DAVP 343
Score = 116 bits (292), Expect = 5e-27
Identities = 93/364 (25%), Positives = 145/364 (39%), Gaps = 73/364 (20%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LP----------YDRVKL 639
IV+GGGP G Q G K+ + E +P YD +K
Sbjct: 5 IVIGGGPGGYVAAIRAAQLGL--KVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 640 SKQLDIKADSILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKK 681
+K L I+ +++ + E+ K N + VIKG+ D
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDP----GT 118
Query: 682 IKLQDGT---SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738
+ + +++ I +ATGS PR++ + + T A + PES +V
Sbjct: 119 VSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI-TSTGA--LNLEEVPES-LV 174
Query: 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
+IG IG+E A+ AS VTV+ EV + + K + KGVK +
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVI-EMLDRILPGEDAEVSKVLQKALKKKGVKILTNTK 233
Query: 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNE 856
V++ EKN+ T+ + V+V +G NT L+ GVEL+ + +VV+E
Sbjct: 234 VTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDE 293
Query: 857 YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAA---LNMVEKKTSL 910
Y+ TNVPG+YA GD+ IG LA + G +AA
Sbjct: 294 YMRTNVPGIYAIGDV--------------IGGPMLAHVASHEGIVAAENIAGKEPAHIDY 339
Query: 911 STIP 914
+P
Sbjct: 340 DAVP 343
Score = 116 bits (292), Expect = 5e-27
Identities = 93/364 (25%), Positives = 145/364 (39%), Gaps = 73/364 (20%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LP----------YDRVKL 1110
IV+GGGP G Q G K+ + E +P YD +K
Sbjct: 5 IVIGGGPGGYVAAIRAAQLGL--KVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 1111 SKQLDIKADSILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKK 1152
+K L I+ +++ + E+ K N + VIKG+ D
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDP----GT 118
Query: 1153 IKLQDGT---SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209
+ + +++ I +ATGS PR++ + + T A + PES +V
Sbjct: 119 VSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI-TSTGA--LNLEEVPES-LV 174
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
+IG IG+E A+ AS VTV+ EV + + K + KGVK +
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVI-EMLDRILPGEDAEVSKVLQKALKKKGVKILTNTK 233
Query: 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNE 1327
V++ EKN+ T+ + V+V +G NT L+ GVEL+ + +VV+E
Sbjct: 234 VTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDE 293
Query: 1328 YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAA---LNMVEKKTSL 1381
Y+ TNVPG+YA GD+ IG LA + G +AA
Sbjct: 294 YMRTNVPGIYAIGDV--------------IGGPMLAHVASHEGIVAAENIAGKEPAHIDY 339
Query: 1382 STIP 1385
+P
Sbjct: 340 DAVP 343
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 106 bits (266), Expect = 5e-24
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 14/257 (5%)
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATGSSPRTISQAD 158
E F K I V ++I ++ + + + T+ + + Y L+ G+SP + +
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN-IE 109
Query: 159 GVNK--VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 214
G+N VF LR +ED + I +I NVV+IG +IG+E A + K+VT++ R
Sbjct: 110 GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169
Query: 215 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 274
+ +E+ + + + + + + V S E E+ V +G AD+V
Sbjct: 170 ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKV----FTSGGVYQADMV 225
Query: 275 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 334
I+ G N+ G++L A+ VNE +T+VP +YA GD+A + + K A +
Sbjct: 226 ILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES-HNIITKKPAWV 284
Query: 335 GHYQLAQYHGRIAALNM 351
A GRIA N+
Sbjct: 285 PLAWGANKMGRIAGENI 301
Score = 106 bits (266), Expect = 5e-24
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 14/257 (5%)
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATGSSPRTISQAD 710
E F K I V ++I ++ + + + T+ + + Y L+ G+SP + +
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN-IE 109
Query: 711 GVNK--VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 766
G+N VF LR +ED + I +I NVV+IG +IG+E A + K+VT++ R
Sbjct: 110 GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169
Query: 767 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826
+ +E+ + + + + + + V S E E+ V +G AD+V
Sbjct: 170 ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKV----FTSGGVYQADMV 225
Query: 827 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 886
I+ G N+ G++L A+ VNE +T+VP +YA GD+A + + K A +
Sbjct: 226 ILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES-HNIITKKPAWV 284
Query: 887 GHYQLAQYHGRIAALNM 903
A GRIA N+
Sbjct: 285 PLAWGANKMGRIAGENI 301
Score = 106 bits (266), Expect = 5e-24
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 14/257 (5%)
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATGSSPRTISQAD 1181
E F K I V ++I ++ + + + T+ + + Y L+ G+SP + +
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN-IE 109
Query: 1182 GVNK--VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 1237
G+N VF LR +ED + I +I NVV+IG +IG+E A + K+VT++ R
Sbjct: 110 GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169
Query: 1238 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297
+ +E+ + + + + + + V S E E+ V +G AD+V
Sbjct: 170 ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKV----FTSGGVYQADMV 225
Query: 1298 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 1357
I+ G N+ G++L A+ VNE +T+VP +YA GD+A + + K A +
Sbjct: 226 ILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES-HNIITKKPAWV 284
Query: 1358 GHYQLAQYHGRIAALNM 1374
A GRIA N+
Sbjct: 285 PLAWGANKMGRIAGENI 301
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 102 bits (257), Expect = 1e-22
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 52/340 (15%)
Query: 48 VVGGGPSGATCV-------ETLRQNG----FTGKLYFITDENFLPYDRVKLSKQLDIKAD 96
+V GP G TCV + L + + K F + D +L + +
Sbjct: 28 MVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVE 87
Query: 97 SILLRTEEF---YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL-ATGSSPR 152
LR E++ + ++G+ D K +K+ G + K +L ATG+ P
Sbjct: 88 E--LRHEKYEDVLSSYGVDYLRGRARFKD----PKTVKVDLGREVRGAKRFLIATGARPA 141
Query: 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 212
I G+ + YL + E +A PES + VIG IG+E A A VT++
Sbjct: 142 -IPPIPGLKEAGYLTSEE---ALALDRIPES-LAVIGGGAIGVELAQAFARLGSEVTILQ 196
Query: 213 R-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIP 270
R + +E E+ + + +G++ V A V + +T +
Sbjct: 197 RSDRLLPREE--PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVE 254
Query: 271 ADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 328
AD ++V G NT+ L+ GV+L+ + ++V+E L T+ PG+YA GD+
Sbjct: 255 ADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV--------- 305
Query: 329 NKNASIGHYQL---AQYHGRIAALNMV---EKKTSLSTIP 362
G QL A G +AA N + K L IP
Sbjct: 306 -----TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340
Score = 102 bits (257), Expect = 1e-22
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 52/340 (15%)
Query: 600 VVGGGPSGATCV-------ETLRQNG----FTGKLYFITDENFLPYDRVKLSKQLDIKAD 648
+V GP G TCV + L + + K F + D +L + +
Sbjct: 28 MVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVE 87
Query: 649 SILLRTEEF---YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL-ATGSSPR 704
LR E++ + ++G+ D K +K+ G + K +L ATG+ P
Sbjct: 88 E--LRHEKYEDVLSSYGVDYLRGRARFKD----PKTVKVDLGREVRGAKRFLIATGARPA 141
Query: 705 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 764
I G+ + YL + E +A PES + VIG IG+E A A VT++
Sbjct: 142 -IPPIPGLKEAGYLTSEE---ALALDRIPES-LAVIGGGAIGVELAQAFARLGSEVTILQ 196
Query: 765 R-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIP 822
R + +E E+ + + +G++ V A V + +T +
Sbjct: 197 RSDRLLPREE--PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVE 254
Query: 823 ADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 880
AD ++V G NT+ L+ GV+L+ + ++V+E L T+ PG+YA GD+
Sbjct: 255 ADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV--------- 305
Query: 881 NKNASIGHYQL---AQYHGRIAALNMV---EKKTSLSTIP 914
G QL A G +AA N + K L IP
Sbjct: 306 -----TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340
Score = 102 bits (257), Expect = 1e-22
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 52/340 (15%)
Query: 1071 VVGGGPSGATCV-------ETLRQNG----FTGKLYFITDENFLPYDRVKLSKQLDIKAD 1119
+V GP G TCV + L + + K F + D +L + +
Sbjct: 28 MVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVE 87
Query: 1120 SILLRTEEF---YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL-ATGSSPR 1175
LR E++ + ++G+ D K +K+ G + K +L ATG+ P
Sbjct: 88 E--LRHEKYEDVLSSYGVDYLRGRARFKD----PKTVKVDLGREVRGAKRFLIATGARPA 141
Query: 1176 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 1235
I G+ + YL + E +A PES + VIG IG+E A A VT++
Sbjct: 142 -IPPIPGLKEAGYLTSEE---ALALDRIPES-LAVIGGGAIGVELAQAFARLGSEVTILQ 196
Query: 1236 R-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIP 1293
R + +E E+ + + +G++ V A V + +T +
Sbjct: 197 RSDRLLPREE--PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVE 254
Query: 1294 ADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 1351
AD ++V G NT+ L+ GV+L+ + ++V+E L T+ PG+YA GD+
Sbjct: 255 ADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV--------- 305
Query: 1352 NKNASIGHYQL---AQYHGRIAALNMV---EKKTSLSTIP 1385
G QL A G +AA N + K L IP
Sbjct: 306 -----TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 100 bits (251), Expect = 8e-22
Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 53/266 (19%)
Query: 107 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV-- 160
K I IKG + + +++ +G I+ I +ATGS I G
Sbjct: 103 KKPKIDKIKGTARFVDP-----NTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRL 156
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA- 215
+ F L + P+S + VIG IG+E A VK VTV RG
Sbjct: 157 LTSDDAFELDKL-----------PKS-LAVIGGGVIGLELGQALSRLGVK-VTVFERGDR 203
Query: 216 -VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADL 273
+P ++ EV ++ K+ + K + A V+S EK+ V T TI AD
Sbjct: 204 ILPLED---PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADY 259
Query: 274 VIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDI-AYAPL-HSFYN 329
V+V G NT+ L + G+EL+ + VV+E+ +T+VPG+YA GD+ PL H
Sbjct: 260 VLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHE--- 316
Query: 330 KNASIGHYQLAQYHGRIAALNMVEKK 355
A GRIAA N
Sbjct: 317 ----------AADEGRIAAENAAGDV 332
Score = 100 bits (251), Expect = 8e-22
Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 53/266 (19%)
Query: 659 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV-- 712
K I IKG + + +++ +G I+ I +ATGS I G
Sbjct: 103 KKPKIDKIKGTARFVDP-----NTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRL 156
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA- 767
+ F L + P+S + VIG IG+E A VK VTV RG
Sbjct: 157 LTSDDAFELDKL-----------PKS-LAVIGGGVIGLELGQALSRLGVK-VTVFERGDR 203
Query: 768 -VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADL 825
+P ++ EV ++ K+ + K + A V+S EK+ V T TI AD
Sbjct: 204 ILPLED---PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADY 259
Query: 826 VIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDI-AYAPL-HSFYN 881
V+V G NT+ L + G+EL+ + VV+E+ +T+VPG+YA GD+ PL H
Sbjct: 260 VLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHE--- 316
Query: 882 KNASIGHYQLAQYHGRIAALNMVEKK 907
A GRIAA N
Sbjct: 317 ----------AADEGRIAAENAAGDV 332
Score = 100 bits (251), Expect = 8e-22
Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 53/266 (19%)
Query: 1130 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV-- 1183
K I IKG + + +++ +G I+ I +ATGS I G
Sbjct: 103 KKPKIDKIKGTARFVDP-----NTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRL 156
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA- 1238
+ F L + P+S + VIG IG+E A VK VTV RG
Sbjct: 157 LTSDDAFELDKL-----------PKS-LAVIGGGVIGLELGQALSRLGVK-VTVFERGDR 203
Query: 1239 -VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADL 1296
+P ++ EV ++ K+ + K + A V+S EK+ V T TI AD
Sbjct: 204 ILPLED---PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADY 259
Query: 1297 VIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDI-AYAPL-HSFYN 1352
V+V G NT+ L + G+EL+ + VV+E+ +T+VPG+YA GD+ PL H
Sbjct: 260 VLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHE--- 316
Query: 1353 KNASIGHYQLAQYHGRIAALNMVEKK 1378
A GRIAA N
Sbjct: 317 ----------AADEGRIAAENAAGDV 332
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 99.1 bits (248), Expect = 2e-21
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 134 DGTSIDFTKIYLATGSSPRTISQADGVNKVFYL--RTVEDANNIAPHITPESNVVVIGSS 191
G ++ +I++ TG+ I G+++V YL T+ + + H+ V+IG
Sbjct: 128 GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNETIFSLDELPEHL------VIIGGG 180
Query: 192 FIGME-AAAFC--ASKVKSVTVVGRGAVPFQESLGKE---VGERITKLFESKGVKFVMKA 245
+IG+E A F S+V TV+ RG L +E V + ++ E +G+ + A
Sbjct: 181 YIGLEFAQMFRRFGSEV---TVIERGP----RLLPREDEDVAAAVREILEREGIDVRLNA 233
Query: 246 NVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 302
E++ + V I ++V +G V NT+ L+ GVE + + + V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 303 NEYLETNVPGVYAGGDI--AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSLS 359
++ L T PG+YA GD A H+ YN RI A N+++ + +S
Sbjct: 294 DDQLRTTNPGIYAAGDCNGRGAFTHTAYND-------------ARIVAANLLDGGRRKVS 340
Query: 360 TIPFFWTM 367
+
Sbjct: 341 DRIVPYAT 348
Score = 99.1 bits (248), Expect = 2e-21
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 686 DGTSIDFTKIYLATGSSPRTISQADGVNKVFYL--RTVEDANNIAPHITPESNVVVIGSS 743
G ++ +I++ TG+ I G+++V YL T+ + + H+ V+IG
Sbjct: 128 GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNETIFSLDELPEHL------VIIGGG 180
Query: 744 FIGME-AAAFC--ASKVKSVTVVGRGAVPFQESLGKE---VGERITKLFESKGVKFVMKA 797
+IG+E A F S+V TV+ RG L +E V + ++ E +G+ + A
Sbjct: 181 YIGLEFAQMFRRFGSEV---TVIERGP----RLLPREDEDVAAAVREILEREGIDVRLNA 233
Query: 798 NVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 854
E++ + V I ++V +G V NT+ L+ GVE + + + V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 855 NEYLETNVPGVYAGGDI--AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSLS 911
++ L T PG+YA GD A H+ YN RI A N+++ + +S
Sbjct: 294 DDQLRTTNPGIYAAGDCNGRGAFTHTAYND-------------ARIVAANLLDGGRRKVS 340
Query: 912 TIPFFWTM 919
+
Sbjct: 341 DRIVPYAT 348
Score = 99.1 bits (248), Expect = 2e-21
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 1157 DGTSIDFTKIYLATGSSPRTISQADGVNKVFYL--RTVEDANNIAPHITPESNVVVIGSS 1214
G ++ +I++ TG+ I G+++V YL T+ + + H+ V+IG
Sbjct: 128 GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNETIFSLDELPEHL------VIIGGG 180
Query: 1215 FIGME-AAAFC--ASKVKSVTVVGRGAVPFQESLGKE---VGERITKLFESKGVKFVMKA 1268
+IG+E A F S+V TV+ RG L +E V + ++ E +G+ + A
Sbjct: 181 YIGLEFAQMFRRFGSEV---TVIERGP----RLLPREDEDVAAAVREILEREGIDVRLNA 233
Query: 1269 NVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 1325
E++ + V I ++V +G V NT+ L+ GVE + + + V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 1326 NEYLETNVPGVYAGGDI--AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSLS 1382
++ L T PG+YA GD A H+ YN RI A N+++ + +S
Sbjct: 294 DDQLRTTNPGIYAAGDCNGRGAFTHTAYND-------------ARIVAANLLDGGRRKVS 340
Query: 1383 TIPFFWTM 1390
+
Sbjct: 341 DRIVPYAT 348
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 97.0 bits (242), Expect = 7e-21
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 101 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIY----LATGSSPRTIS 155
RT E + + I V +++ + K I +++ T F Y +ATG+ P I
Sbjct: 61 RTPEEFIKSGIDVKTEHEVVK-VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIP 118
Query: 156 QADGVN--KVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVV 211
+N V+ L+++ED + + E N+V+IG+ FIG+EA K+V ++
Sbjct: 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRII 178
Query: 212 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 271
+S KE+ + + + GV+ + V S +K V D G A
Sbjct: 179 QLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK--VEGVVTDKGE-YEA 235
Query: 272 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 331
D+VIV G NT +L+ G++ A++V+EY ET++ +YA GD A + NKN
Sbjct: 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA-TIYNIVSNKN 294
Query: 332 ASIGHYQLAQYHGRIAALNMVEKKTSLS 359
+ A GR+ N+ + S
Sbjct: 295 VYVPLATTANKLGRMVGENLAGRHVSFK 322
Score = 97.0 bits (242), Expect = 7e-21
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 653 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIY----LATGSSPRTIS 707
RT E + + I V +++ + K I +++ T F Y +ATG+ P I
Sbjct: 61 RTPEEFIKSGIDVKTEHEVVK-VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIP 118
Query: 708 QADGVN--KVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVV 763
+N V+ L+++ED + + E N+V+IG+ FIG+EA K+V ++
Sbjct: 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRII 178
Query: 764 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
+S KE+ + + + GV+ + V S +K V D G A
Sbjct: 179 QLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK--VEGVVTDKGE-YEA 235
Query: 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 883
D+VIV G NT +L+ G++ A++V+EY ET++ +YA GD A + NKN
Sbjct: 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA-TIYNIVSNKN 294
Query: 884 ASIGHYQLAQYHGRIAALNMVEKKTSLS 911
+ A GR+ N+ + S
Sbjct: 295 VYVPLATTANKLGRMVGENLAGRHVSFK 322
Score = 97.0 bits (242), Expect = 7e-21
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 1124 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIY----LATGSSPRTIS 1178
RT E + + I V +++ + K I +++ T F Y +ATG+ P I
Sbjct: 61 RTPEEFIKSGIDVKTEHEVVK-VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIP 118
Query: 1179 QADGVN--KVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVV 1234
+N V+ L+++ED + + E N+V+IG+ FIG+EA K+V ++
Sbjct: 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRII 178
Query: 1235 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294
+S KE+ + + + GV+ + V S +K V D G A
Sbjct: 179 QLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK--VEGVVTDKGE-YEA 235
Query: 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 1354
D+VIV G NT +L+ G++ A++V+EY ET++ +YA GD A + NKN
Sbjct: 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA-TIYNIVSNKN 294
Query: 1355 ASIGHYQLAQYHGRIAALNMVEKKTSLS 1382
+ A GR+ N+ + S
Sbjct: 295 VYVPLATTANKLGRMVGENLAGRHVSFK 322
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 94.1 bits (235), Expect = 8e-20
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 60/267 (22%)
Query: 107 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADGVNKV 163
K N + +I+G+ K++ + + + I LATGS PR + + DG +
Sbjct: 103 KKNKVDIIRGEAKLVDPNTVRVMTED--GEQTYTAKNIILATGSRPRELPGIEIDG-RVI 159
Query: 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 223
+ T ++A N+ + P+S +VVIG +IG+E A+ AS VT+V
Sbjct: 160 W---TSDEALNL-DEV-PKS-LVVIGGGYIGVEFASAYASLGAEVTIV------------ 201
Query: 224 KEVGER--------ITKL----FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTI 269
E R I+KL + +G+K A E+ + + VT D G T+
Sbjct: 202 -EALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVTVTLEDGGKEETL 259
Query: 270 PADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 327
AD V+V +G NT L+ GV+ + + V+E L TNVP +YA GDI P
Sbjct: 260 EADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGP---- 314
Query: 328 YNKNASIGHYQLAQ---YHGRIAALNM 351
LA G IAA +
Sbjct: 315 ----------MLAHKASAEGIIAAEAI 331
Score = 94.1 bits (235), Expect = 8e-20
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 60/267 (22%)
Query: 659 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADGVNKV 715
K N + +I+G+ K++ + + + I LATGS PR + + DG +
Sbjct: 103 KKNKVDIIRGEAKLVDPNTVRVMTED--GEQTYTAKNIILATGSRPRELPGIEIDG-RVI 159
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 775
+ T ++A N+ + P+S +VVIG +IG+E A+ AS VT+V
Sbjct: 160 W---TSDEALNL-DEV-PKS-LVVIGGGYIGVEFASAYASLGAEVTIV------------ 201
Query: 776 KEVGER--------ITKL----FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTI 821
E R I+KL + +G+K A E+ + + VT D G T+
Sbjct: 202 -EALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVTVTLEDGGKEETL 259
Query: 822 PADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 879
AD V+V +G NT L+ GV+ + + V+E L TNVP +YA GDI P
Sbjct: 260 EADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGP---- 314
Query: 880 YNKNASIGHYQLAQ---YHGRIAALNM 903
LA G IAA +
Sbjct: 315 ----------MLAHKASAEGIIAAEAI 331
Score = 94.1 bits (235), Expect = 8e-20
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 60/267 (22%)
Query: 1130 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADGVNKV 1186
K N + +I+G+ K++ + + + I LATGS PR + + DG +
Sbjct: 103 KKNKVDIIRGEAKLVDPNTVRVMTED--GEQTYTAKNIILATGSRPRELPGIEIDG-RVI 159
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 1246
+ T ++A N+ + P+S +VVIG +IG+E A+ AS VT+V
Sbjct: 160 W---TSDEALNL-DEV-PKS-LVVIGGGYIGVEFASAYASLGAEVTIV------------ 201
Query: 1247 KEVGER--------ITKL----FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTI 1292
E R I+KL + +G+K A E+ + + VT D G T+
Sbjct: 202 -EALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVTVTLEDGGKEETL 259
Query: 1293 PADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350
AD V+V +G NT L+ GV+ + + V+E L TNVP +YA GDI P
Sbjct: 260 EADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGP---- 314
Query: 1351 YNKNASIGHYQLAQ---YHGRIAALNM 1374
LA G IAA +
Sbjct: 315 ----------MLAHKASAEGIIAAEAI 331
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 95.7 bits (238), Expect = 8e-20
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 13/280 (4%)
Query: 47 IVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 103
++VG G +G C+E + + N ++ +E Y+R+ LS Q + D I L ++
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 104 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162
++Y+ + I + G+ +I D++ +K++ G ++ + K+ LATGS P I G +K
Sbjct: 62 DWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADK 118
Query: 163 --VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 220
V+ RT+ED + I VIG +G+EAA + V+V+ +
Sbjct: 119 KGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178
Query: 221 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280
L + G + + E KG+ F+++ + K D +G+++ ADL+++ G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKAD--RIRFKDGSSLEADLIVMAAGI 236
Query: 281 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
N G+++N ++VN+ ++T+ P +YA G+ A
Sbjct: 237 RPNDELAVSAGIKVNR--GIIVNDSMQTSDPDIYAVGECA 274
Score = 95.7 bits (238), Expect = 8e-20
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 13/280 (4%)
Query: 599 IVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 655
++VG G +G C+E + + N ++ +E Y+R+ LS Q + D I L ++
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 656 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
++Y+ + I + G+ +I D++ +K++ G ++ + K+ LATGS P I G +K
Sbjct: 62 DWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADK 118
Query: 715 --VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772
V+ RT+ED + I VIG +G+EAA + V+V+ +
Sbjct: 119 KGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178
Query: 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832
L + G + + E KG+ F+++ + K D +G+++ ADL+++ G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKAD--RIRFKDGSSLEADLIVMAAGI 236
Query: 833 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
N G+++N ++VN+ ++T+ P +YA G+ A
Sbjct: 237 RPNDELAVSAGIKVNR--GIIVNDSMQTSDPDIYAVGECA 274
Score = 95.7 bits (238), Expect = 8e-20
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 13/280 (4%)
Query: 1070 IVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 1126
++VG G +G C+E + + N ++ +E Y+R+ LS Q + D I L ++
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 1127 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 1185
++Y+ + I + G+ +I D++ +K++ G ++ + K+ LATGS P I G +K
Sbjct: 62 DWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADK 118
Query: 1186 --VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 1243
V+ RT+ED + I VIG +G+EAA + V+V+ +
Sbjct: 119 KGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178
Query: 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303
L + G + + E KG+ F+++ + K D +G+++ ADL+++ G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKAD--RIRFKDGSSLEADLIVMAAGI 236
Query: 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
N G+++N ++VN+ ++T+ P +YA G+ A
Sbjct: 237 RPNDELAVSAGIKVNR--GIIVNDSMQTSDPDIYAVGECA 274
Score = 32.1 bits (73), Expect = 2.6
Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 25/182 (13%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 107
V+GGG G L+ G + I L ++KQLD A +L R E
Sbjct: 145 VIGGGLLGLEAAVGLQNLGM--DVSVIHHAPGL------MAKQLDQTAGRLLQRELE--- 193
Query: 108 DNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSSPRT-------ISQADG 159
+ + K + +I+ +DG+S++ I +A G P I G
Sbjct: 194 QKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRG 253
Query: 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 219
+ ++T + P I G+ A + +KV + + G ++
Sbjct: 254 IIVNDSMQTSD------PDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYE 307
Query: 220 ES 221
S
Sbjct: 308 GS 309
Score = 32.1 bits (73), Expect = 2.6
Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 25/182 (13%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 659
V+GGG G L+ G + I L ++KQLD A +L R E
Sbjct: 145 VIGGGLLGLEAAVGLQNLGM--DVSVIHHAPGL------MAKQLDQTAGRLLQRELE--- 193
Query: 660 DNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSSPRT-------ISQADG 711
+ + K + +I+ +DG+S++ I +A G P I G
Sbjct: 194 QKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRG 253
Query: 712 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 771
+ ++T + P I G+ A + +KV + + G ++
Sbjct: 254 IIVNDSMQTSD------PDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYE 307
Query: 772 ES 773
S
Sbjct: 308 GS 309
Score = 32.1 bits (73), Expect = 2.6
Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 25/182 (13%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 1130
V+GGG G L+ G + I L ++KQLD A +L R E
Sbjct: 145 VIGGGLLGLEAAVGLQNLGM--DVSVIHHAPGL------MAKQLDQTAGRLLQRELE--- 193
Query: 1131 DNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSSPRT-------ISQADG 1182
+ + K + +I+ +DG+S++ I +A G P I G
Sbjct: 194 QKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRG 253
Query: 1183 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 1242
+ ++T + P I G+ A + +KV + + G ++
Sbjct: 254 IIVNDSMQTSD------PDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYE 307
Query: 1243 ES 1244
S
Sbjct: 308 GS 309
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 91.9 bits (229), Expect = 3e-19
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 127 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 186
K ++ DG I ++ +A GS P I + V Y T + + PES +V
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY-HTSDTIMRLPE--LPES-LV 170
Query: 187 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
++G FI E A ++ VTVV R + L ++ ER T+L + + N
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELASKR-WDVRLGRN 228
Query: 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNE 304
V + LD+G+T+ AD+++V G V N + LD GV+++ VVV+E
Sbjct: 229 VVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 305 YLETNVPGVYAGGDI 319
Y T+ GV+A GD+
Sbjct: 287 YQRTSAEGVFALGDV 301
Score = 91.9 bits (229), Expect = 3e-19
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 679 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738
K ++ DG I ++ +A GS P I + V Y T + + PES +V
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY-HTSDTIMRLPE--LPES-LV 170
Query: 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
++G FI E A ++ VTVV R + L ++ ER T+L + + N
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELASKR-WDVRLGRN 228
Query: 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNE 856
V + LD+G+T+ AD+++V G V N + LD GV+++ VVV+E
Sbjct: 229 VVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 857 YLETNVPGVYAGGDI 871
Y T+ GV+A GD+
Sbjct: 287 YQRTSAEGVFALGDV 301
Score = 91.9 bits (229), Expect = 3e-19
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 1150 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209
K ++ DG I ++ +A GS P I + V Y T + + PES +V
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY-HTSDTIMRLPE--LPES-LV 170
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
++G FI E A ++ VTVV R + L ++ ER T+L + + N
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELASKR-WDVRLGRN 228
Query: 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNE 1327
V + LD+G+T+ AD+++V G V N + LD GV+++ VVV+E
Sbjct: 229 VVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 1328 YLETNVPGVYAGGDI 1342
Y T+ GV+A GD+
Sbjct: 287 YQRTSAEGVFALGDV 301
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 90.0 bits (223), Expect = 2e-18
Identities = 87/344 (25%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 47 IVVGGGPSGATCVET-----------------LRQNGFTGKLYFITDENFLP-YDRVKLS 88
I+ G G CV R N F G E P DR L
Sbjct: 44 IIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV------EAVAPSIDRGLLL 97
Query: 89 KQLDIKADSILLRTEEFYK--DND--IHVIKGKKIISDSELNEKKIKLQDGTSID--FTK 142
Q + + LR ++ D + + ++KG D N ++L DG +
Sbjct: 98 HQQQARVEE--LRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHDGGERVLAADR 153
Query: 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 202
+ATGS+P TI G+ Y + E + P S + VIGSS + E A A
Sbjct: 154 CLIATGSTP-TIPPIPGLMDTPYWTSTEALFSDE---LPAS-LTVIGSSVVAAEIAQAYA 208
Query: 203 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 262
VT++ R + F+E +GE +T FE +G++ + S E ++ V
Sbjct: 209 RLGSRVTILARSTLLFRED--PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266
Query: 263 LDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
+G A+ +++ G NT+ L + GV + A+VVN +ET+ P +YA GD +
Sbjct: 267 --HGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323
Query: 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIP 362
P + +A G A +NM LS +P
Sbjct: 324 DLPQFVY-----------VAAAAGSRAGINMTGGNATLDLSAMP 356
Score = 90.0 bits (223), Expect = 2e-18
Identities = 87/344 (25%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 599 IVVGGGPSGATCVET-----------------LRQNGFTGKLYFITDENFLP-YDRVKLS 640
I+ G G CV R N F G E P DR L
Sbjct: 44 IIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV------EAVAPSIDRGLLL 97
Query: 641 KQLDIKADSILLRTEEFYK--DND--IHVIKGKKIISDSELNEKKIKLQDGTSID--FTK 694
Q + + LR ++ D + + ++KG D N ++L DG +
Sbjct: 98 HQQQARVEE--LRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHDGGERVLAADR 153
Query: 695 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 754
+ATGS+P TI G+ Y + E + P S + VIGSS + E A A
Sbjct: 154 CLIATGSTP-TIPPIPGLMDTPYWTSTEALFSDE---LPAS-LTVIGSSVVAAEIAQAYA 208
Query: 755 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 814
VT++ R + F+E +GE +T FE +G++ + S E ++ V
Sbjct: 209 RLGSRVTILARSTLLFRED--PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266
Query: 815 LDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
+G A+ +++ G NT+ L + GV + A+VVN +ET+ P +YA GD +
Sbjct: 267 --HGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323
Query: 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIP 914
P + +A G A +NM LS +P
Sbjct: 324 DLPQFVY-----------VAAAAGSRAGINMTGGNATLDLSAMP 356
Score = 90.0 bits (223), Expect = 2e-18
Identities = 87/344 (25%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 1070 IVVGGGPSGATCVET-----------------LRQNGFTGKLYFITDENFLP-YDRVKLS 1111
I+ G G CV R N F G E P DR L
Sbjct: 44 IIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV------EAVAPSIDRGLLL 97
Query: 1112 KQLDIKADSILLRTEEFYK--DND--IHVIKGKKIISDSELNEKKIKLQDGTSID--FTK 1165
Q + + LR ++ D + + ++KG D N ++L DG +
Sbjct: 98 HQQQARVEE--LRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHDGGERVLAADR 153
Query: 1166 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225
+ATGS+P TI G+ Y + E + P S + VIGSS + E A A
Sbjct: 154 CLIATGSTP-TIPPIPGLMDTPYWTSTEALFSDE---LPAS-LTVIGSSVVAAEIAQAYA 208
Query: 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285
VT++ R + F+E +GE +T FE +G++ + S E ++ V
Sbjct: 209 RLGSRVTILARSTLLFRED--PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266
Query: 1286 LDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
+G A+ +++ G NT+ L + GV + A+VVN +ET+ P +YA GD +
Sbjct: 267 --HGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323
Query: 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIP 1385
P + +A G A +NM LS +P
Sbjct: 324 DLPQFVY-----------VAAAAGSRAGINMTGGNATLDLSAMP 356
>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes. The Rieske
domain can be divided into two subdomains, with an
incomplete six-stranded, antiparallel beta-barrel at one
end, and an iron-sulfur cluster binding subdomain at the
other. The Rieske iron-sulfur center contains a [2Fe-2S]
cluster, which is involved in electron transfer, and is
liganded to two histidine and two cysteine residues
present in conserved sequences called Rieske motifs. In
RO systems, the N-terminal Rieske domain of the alpha
subunit acts as an electron shuttle that accepts
electrons from a reductase or ferredoxin component and
transfers them to the mononuclear iron in the alpha
subunit C-terminal domain to be used for catalysis.
Length = 98
Score = 80.2 bits (198), Expect = 6e-18
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 954 NADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI 1013
++ G + + +YA+ +C+H G PL +G DG + CP HG+ F++
Sbjct: 11 PPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDL 70
Query: 1014 ATGDIEDFPGMDSLPCYKVTIQNDDSVV 1041
TG++ P LP Y V ++ D V
Sbjct: 71 RTGEVVSGPAPRPLPKYPVKVEGDGVVW 98
Score = 76.8 bits (189), Expect = 9e-17
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+YA+ +C+H G PL +G DG + CP HG+ F++ TG++ P LP Y V ++ D
Sbjct: 35 VYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEGD 94
Query: 567 DSVV 570
V
Sbjct: 95 GVVW 98
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 83.4 bits (207), Expect = 2e-16
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 106 YKDNDIHVIKGK-KIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 163
+K N I V+KG+ + E K+ +D T I + +ATGS PR + NK
Sbjct: 110 FKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK- 168
Query: 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQESL 222
+++ + P+ + VIG+ IG+E + VT++ A+P F +
Sbjct: 169 ---IILDNTGALNFTEVPK-KLAVIGAGVIGLELGSVWRRLGAEVTILE--ALPAFLAAA 222
Query: 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGT 280
++V + K F +G+ + + + K A +G T+ D +IV IG
Sbjct: 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282
Query: 281 VLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
V NT+ L + G++L+ + + V+++ TNVP VYA GD+ P+
Sbjct: 283 VPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
Score = 83.4 bits (207), Expect = 2e-16
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 658 YKDNDIHVIKGK-KIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 715
+K N I V+KG+ + E K+ +D T I + +ATGS PR + NK
Sbjct: 110 FKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK- 168
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQESL 774
+++ + P+ + VIG+ IG+E + VT++ A+P F +
Sbjct: 169 ---IILDNTGALNFTEVPK-KLAVIGAGVIGLELGSVWRRLGAEVTILE--ALPAFLAAA 222
Query: 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGT 832
++V + K F +G+ + + + K A +G T+ D +IV IG
Sbjct: 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282
Query: 833 VLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
V NT+ L + G++L+ + + V+++ TNVP VYA GD+ P+
Sbjct: 283 VPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
Score = 83.4 bits (207), Expect = 2e-16
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 1129 YKDNDIHVIKGK-KIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 1186
+K N I V+KG+ + E K+ +D T I + +ATGS PR + NK
Sbjct: 110 FKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK- 168
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQESL 1245
+++ + P+ + VIG+ IG+E + VT++ A+P F +
Sbjct: 169 ---IILDNTGALNFTEVPK-KLAVIGAGVIGLELGSVWRRLGAEVTILE--ALPAFLAAA 222
Query: 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGT 1303
++V + K F +G+ + + + K A +G T+ D +IV IG
Sbjct: 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282
Query: 1304 VLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
V NT+ L + G++L+ + + V+++ TNVP VYA GD+ P+
Sbjct: 283 VPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 80.8 bits (200), Expect = 1e-15
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 54/329 (16%)
Query: 93 IKADSILLRTEEFYKDND-IHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 151
+ I + + + + ++G+ ++D + + KK+ L D I + + +A GS
Sbjct: 54 LSESEIAIPLRALLRKSGNVQFVQGE--VTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 152 RTISQADGVNK-VFYLRTVEDANNIAPHI--------TPES-----NVVVIGSSFIGMEA 197
G + F L+T+EDA + H+ E +V++G G+E
Sbjct: 112 NYFG-IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170
Query: 198 AAFCASKVKS-------------VTVVGRGA---VPFQESLGKEVGERITKLFESKGVKF 241
A A ++ V +V G F L K + E GV+
Sbjct: 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYA----ERALEKLGVEV 226
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 301
++ V+ + VT D IPAD V+ G + D G+E + + +V
Sbjct: 227 LLGTPVTEVTPDG---VTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLV 281
Query: 302 VNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR--IAALNMVEKKT-- 356
VN L+ P ++A GD A A H Q +Y + A L K
Sbjct: 282 VNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH-QQGEYAAKNIKARLKGKPLKPFK 340
Query: 357 -----SLSTIPFFWTMLFGVGFRFAGYAA 380
+L+++ F + G + G+ A
Sbjct: 341 YKDKGTLASLGDFSAVADLGGVKLKGFLA 369
Score = 80.8 bits (200), Expect = 1e-15
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 54/329 (16%)
Query: 645 IKADSILLRTEEFYKDND-IHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 703
+ I + + + + ++G+ ++D + + KK+ L D I + + +A GS
Sbjct: 54 LSESEIAIPLRALLRKSGNVQFVQGE--VTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 704 RTISQADGVNK-VFYLRTVEDANNIAPHI--------TPES-----NVVVIGSSFIGMEA 749
G + F L+T+EDA + H+ E +V++G G+E
Sbjct: 112 NYFG-IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170
Query: 750 AAFCASKVKS-------------VTVVGRGA---VPFQESLGKEVGERITKLFESKGVKF 793
A A ++ V +V G F L K + E GV+
Sbjct: 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYA----ERALEKLGVEV 226
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853
++ V+ + VT D IPAD V+ G + D G+E + + +V
Sbjct: 227 LLGTPVTEVTPDG---VTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLV 281
Query: 854 VNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR--IAALNMVEKKT-- 908
VN L+ P ++A GD A A H Q +Y + A L K
Sbjct: 282 VNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH-QQGEYAAKNIKARLKGKPLKPFK 340
Query: 909 -----SLSTIPFFWTMLFGVGFRFAGYAA 932
+L+++ F + G + G+ A
Sbjct: 341 YKDKGTLASLGDFSAVADLGGVKLKGFLA 369
Score = 80.8 bits (200), Expect = 1e-15
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 54/329 (16%)
Query: 1116 IKADSILLRTEEFYKDND-IHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 1174
+ I + + + + ++G+ ++D + + KK+ L D I + + +A GS
Sbjct: 54 LSESEIAIPLRALLRKSGNVQFVQGE--VTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 1175 RTISQADGVNK-VFYLRTVEDANNIAPHI--------TPES-----NVVVIGSSFIGMEA 1220
G + F L+T+EDA + H+ E +V++G G+E
Sbjct: 112 NYFG-IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170
Query: 1221 AAFCASKVKS-------------VTVVGRGA---VPFQESLGKEVGERITKLFESKGVKF 1264
A A ++ V +V G F L K + E GV+
Sbjct: 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYA----ERALEKLGVEV 226
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324
++ V+ + VT D IPAD V+ G + D G+E + + +V
Sbjct: 227 LLGTPVTEVTPDG---VTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLV 281
Query: 1325 VNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR--IAALNMVEKKT-- 1379
VN L+ P ++A GD A A H Q +Y + A L K
Sbjct: 282 VNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH-QQGEYAAKNIKARLKGKPLKPFK 340
Query: 1380 -----SLSTIPFFWTMLFGVGFRFAGYAA 1403
+L+++ F + G + G+ A
Sbjct: 341 YKDKGTLASLGDFSAVADLGGVKLKGFLA 369
Score = 33.0 bits (76), Expect = 1.1
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAV-PFQESL-----G----KEVGERIT 231
+V++G F G+ AA A K+ +T+V R F L G E+ +
Sbjct: 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLR 64
Query: 232 KLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 290
L +S V+FV V+ +++ K VT L + I D ++V +G+ TNY
Sbjct: 65 ALLRKSGNVQFVQ-GEVTDIDRDAKK-VT---LADLGEISYDYLVVALGSE--TNYFGIP 117
Query: 291 GVELNG 296
G
Sbjct: 118 GAAEYA 123
Score = 33.0 bits (76), Expect = 1.1
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAV-PFQESL-----G----KEVGERIT 783
+V++G F G+ AA A K+ +T+V R F L G E+ +
Sbjct: 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLR 64
Query: 784 KLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842
L +S V+FV V+ +++ K VT L + I D ++V +G+ TNY
Sbjct: 65 ALLRKSGNVQFVQ-GEVTDIDRDAKK-VT---LADLGEISYDYLVVALGSE--TNYFGIP 117
Query: 843 GVELNG 848
G
Sbjct: 118 GAAEYA 123
Score = 33.0 bits (76), Expect = 1.1
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAV-PFQESL-----G----KEVGERIT 1254
+V++G F G+ AA A K+ +T+V R F L G E+ +
Sbjct: 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLR 64
Query: 1255 KLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313
L +S V+FV V+ +++ K VT L + I D ++V +G+ TNY
Sbjct: 65 ALLRKSGNVQFVQ-GEVTDIDRDAKK-VT---LADLGEISYDYLVVALGSE--TNYFGIP 117
Query: 1314 GVELNG 1319
G
Sbjct: 118 GAAEYA 123
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 81.0 bits (200), Expect = 1e-15
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 127 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 186
+ ++ DG I +I +A GS P I A + V Y T ED + PES +V
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVRY-HTNEDIMRLPE--LPES-LV 173
Query: 187 VIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245
++G +I E A F A + VT+V R + L +++ +R T++ K +
Sbjct: 174 IVGGGYIAAEFAHVFSALGTR-VTIVNRSTKLLRH-LDEDISDRFTEI-AKKKWDIRLGR 230
Query: 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVN 303
NV++ E + D LD+G+T+ AD+++V G V N + LD + GVE++ + V+
Sbjct: 231 NVTAVE--QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 304 EYLETNVPGVYAGGDIA 320
EY T+ GV+A GD++
Sbjct: 289 EYGRTSARGVWALGDVS 305
Score = 81.0 bits (200), Expect = 1e-15
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 679 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738
+ ++ DG I +I +A GS P I A + V Y T ED + PES +V
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVRY-HTNEDIMRLPE--LPES-LV 173
Query: 739 VIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 797
++G +I E A F A + VT+V R + L +++ +R T++ K +
Sbjct: 174 IVGGGYIAAEFAHVFSALGTR-VTIVNRSTKLLRH-LDEDISDRFTEI-AKKKWDIRLGR 230
Query: 798 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVN 855
NV++ E + D LD+G+T+ AD+++V G V N + LD + GVE++ + V+
Sbjct: 231 NVTAVE--QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 856 EYLETNVPGVYAGGDIA 872
EY T+ GV+A GD++
Sbjct: 289 EYGRTSARGVWALGDVS 305
Score = 81.0 bits (200), Expect = 1e-15
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 1150 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209
+ ++ DG I +I +A GS P I A + V Y T ED + PES +V
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVRY-HTNEDIMRLPE--LPES-LV 173
Query: 1210 VIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 1268
++G +I E A F A + VT+V R + L +++ +R T++ K +
Sbjct: 174 IVGGGYIAAEFAHVFSALGTR-VTIVNRSTKLLRH-LDEDISDRFTEI-AKKKWDIRLGR 230
Query: 1269 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVN 1326
NV++ E + D LD+G+T+ AD+++V G V N + LD + GVE++ + V+
Sbjct: 231 NVTAVE--QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 1327 EYLETNVPGVYAGGDIA 1343
EY T+ GV+A GD++
Sbjct: 289 EYGRTSARGVWALGDVS 305
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 78.5 bits (194), Expect = 2e-15
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 47 IVVGGGPSGATC-------------VETLRQNGFTGKLYFITD-ENFLPYDRVKLSKQLD 92
I++GGGP+G T + + G G+L TD EN+ +
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--GQLTKTTDVENYPGFPG-------G 57
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 152
I ++ + +E + + +++ + + E K+K GT + + +ATG+ R
Sbjct: 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116
Query: 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 212
+ F + V +VVVIG +E A + + K VT+V
Sbjct: 117 KLGVPGEEE--FEGKGVS-YCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH 173
Query: 213 RGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TI 269
R + E I +L ++ ++ + V ++ V N+ +
Sbjct: 174 RR--------DEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKEL 225
Query: 270 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 329
P D V + IG + NT L G GV +VV+E +ET+VPG++A GD+A
Sbjct: 226 PVDGVFIAIGHLPNTELLKGLGVLDENGY-IVVDEEMETSVPGIFAAGDVADKN-----G 279
Query: 330 KNASIGHYQLAQYHGRIAALNMVEKKTSL 358
+ + A G IAAL+ SL
Sbjct: 280 RQIAT-----AAGDGAIAALSAERYLESL 303
Score = 78.5 bits (194), Expect = 2e-15
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 599 IVVGGGPSGATC-------------VETLRQNGFTGKLYFITD-ENFLPYDRVKLSKQLD 644
I++GGGP+G T + + G G+L TD EN+ +
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--GQLTKTTDVENYPGFPG-------G 57
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 704
I ++ + +E + + +++ + + E K+K GT + + +ATG+ R
Sbjct: 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116
Query: 705 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 764
+ F + V +VVVIG +E A + + K VT+V
Sbjct: 117 KLGVPGEEE--FEGKGVS-YCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH 173
Query: 765 RGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TI 821
R + E I +L ++ ++ + V ++ V N+ +
Sbjct: 174 RR--------DEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKEL 225
Query: 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 881
P D V + IG + NT L G GV +VV+E +ET+VPG++A GD+A
Sbjct: 226 PVDGVFIAIGHLPNTELLKGLGVLDENGY-IVVDEEMETSVPGIFAAGDVADKN-----G 279
Query: 882 KNASIGHYQLAQYHGRIAALNMVEKKTSL 910
+ + A G IAAL+ SL
Sbjct: 280 RQIAT-----AAGDGAIAALSAERYLESL 303
Score = 78.5 bits (194), Expect = 2e-15
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 1070 IVVGGGPSGATC-------------VETLRQNGFTGKLYFITD-ENFLPYDRVKLSKQLD 1115
I++GGGP+G T + + G G+L TD EN+ +
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--GQLTKTTDVENYPGFPG-------G 57
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 1175
I ++ + +E + + +++ + + E K+K GT + + +ATG+ R
Sbjct: 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116
Query: 1176 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 1235
+ F + V +VVVIG +E A + + K VT+V
Sbjct: 117 KLGVPGEEE--FEGKGVS-YCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH 173
Query: 1236 RGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TI 1292
R + E I +L ++ ++ + V ++ V N+ +
Sbjct: 174 RR--------DEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKEL 225
Query: 1293 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 1352
P D V + IG + NT L G GV +VV+E +ET+VPG++A GD+A
Sbjct: 226 PVDGVFIAIGHLPNTELLKGLGVLDENGY-IVVDEEMETSVPGIFAAGDVADKN-----G 279
Query: 1353 KNASIGHYQLAQYHGRIAALNMVEKKTSL 1381
+ + A G IAAL+ SL
Sbjct: 280 RQIAT-----AAGDGAIAALSAERYLESL 303
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 81.0 bits (200), Expect = 2e-15
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 111 IHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYLRT 168
I V+ G+ D ++L DG + F + +ATG+SP + G+ + Y +
Sbjct: 204 ITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGLKETPYWTS 260
Query: 169 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE 228
E + PE + VIGSS + +E A A VT++ R + F+E +GE
Sbjct: 261 TE---ALVSDTIPE-RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRED--PAIGE 314
Query: 229 RITKLFESKGVKFVMKANVS--SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 286
+T F ++G++ + S + E T + AD ++V G NT
Sbjct: 315 AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-----ELRADKLLVATGRAPNTRS 369
Query: 287 L--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 344
L D GV +N Q A+V+++ + T+VP +YA GD P + +A G
Sbjct: 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVY-----------VAAAAG 418
Query: 345 RIAALNMV--EKKTSLSTIP 362
AA+NM + L+ +P
Sbjct: 419 TRAAINMTGGDAALDLTAMP 438
Score = 81.0 bits (200), Expect = 2e-15
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 663 IHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYLRT 720
I V+ G+ D ++L DG + F + +ATG+SP + G+ + Y +
Sbjct: 204 ITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGLKETPYWTS 260
Query: 721 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE 780
E + PE + VIGSS + +E A A VT++ R + F+E +GE
Sbjct: 261 TE---ALVSDTIPE-RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRED--PAIGE 314
Query: 781 RITKLFESKGVKFVMKANVS--SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 838
+T F ++G++ + S + E T + AD ++V G NT
Sbjct: 315 AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-----ELRADKLLVATGRAPNTRS 369
Query: 839 L--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896
L D GV +N Q A+V+++ + T+VP +YA GD P + +A G
Sbjct: 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVY-----------VAAAAG 418
Query: 897 RIAALNMV--EKKTSLSTIP 914
AA+NM + L+ +P
Sbjct: 419 TRAAINMTGGDAALDLTAMP 438
Score = 81.0 bits (200), Expect = 2e-15
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 1134 IHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYLRT 1191
I V+ G+ D ++L DG + F + +ATG+SP + G+ + Y +
Sbjct: 204 ITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGLKETPYWTS 260
Query: 1192 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE 1251
E + PE + VIGSS + +E A A VT++ R + F+E +GE
Sbjct: 261 TE---ALVSDTIPE-RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRED--PAIGE 314
Query: 1252 RITKLFESKGVKFVMKANVS--SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 1309
+T F ++G++ + S + E T + AD ++V G NT
Sbjct: 315 AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-----ELRADKLLVATGRAPNTRS 369
Query: 1310 L--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 1367
L D GV +N Q A+V+++ + T+VP +YA GD P + +A G
Sbjct: 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVY-----------VAAAAG 418
Query: 1368 RIAALNMV--EKKTSLSTIP 1385
AA+NM + L+ +P
Sbjct: 419 TRAAINMTGGDAALDLTAMP 438
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 78.7 bits (195), Expect = 6e-15
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 101 RTEEFYK----DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TI 154
R Y+ +N + +I+G D +++ +G I +ATG P I
Sbjct: 94 RLHGSYRNGLENNGVDLIEGFARFVD----AHTVEV-NGERYTADHILIATGGRPSIPDI 148
Query: 155 SQAD-GV--NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTV 210
A+ G+ + F L + P+ V V+G+ +I +E A + +
Sbjct: 149 PGAEYGITSDGFFALEEL-----------PKR-VAVVGAGYIAVEFAGVLNGLGSE-THL 195
Query: 211 VGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 267
RG P F + + + E + K KG++ A + EKN +T L++G
Sbjct: 196 FVRGDAPLRGFDPDIRETLVEEMEK----KGIRLHTNAVPKAVEKNADGSLTL-TLEDGE 250
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
T+ D +I IG NT+ L+ GV+LN + ++V+EY TNVPG+YA GD+
Sbjct: 251 TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304
Score = 78.7 bits (195), Expect = 6e-15
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 653 RTEEFYK----DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TI 706
R Y+ +N + +I+G D +++ +G I +ATG P I
Sbjct: 94 RLHGSYRNGLENNGVDLIEGFARFVD----AHTVEV-NGERYTADHILIATGGRPSIPDI 148
Query: 707 SQAD-GV--NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTV 762
A+ G+ + F L + P+ V V+G+ +I +E A + +
Sbjct: 149 PGAEYGITSDGFFALEEL-----------PKR-VAVVGAGYIAVEFAGVLNGLGSE-THL 195
Query: 763 VGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 819
RG P F + + + E + K KG++ A + EKN +T L++G
Sbjct: 196 FVRGDAPLRGFDPDIRETLVEEMEK----KGIRLHTNAVPKAVEKNADGSLTL-TLEDGE 250
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
T+ D +I IG NT+ L+ GV+LN + ++V+EY TNVPG+YA GD+
Sbjct: 251 TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304
Score = 78.7 bits (195), Expect = 6e-15
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 1124 RTEEFYK----DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TI 1177
R Y+ +N + +I+G D +++ +G I +ATG P I
Sbjct: 94 RLHGSYRNGLENNGVDLIEGFARFVD----AHTVEV-NGERYTADHILIATGGRPSIPDI 148
Query: 1178 SQAD-GV--NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTV 1233
A+ G+ + F L + P+ V V+G+ +I +E A + +
Sbjct: 149 PGAEYGITSDGFFALEEL-----------PKR-VAVVGAGYIAVEFAGVLNGLGSE-THL 195
Query: 1234 VGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 1290
RG P F + + + E + K KG++ A + EKN +T L++G
Sbjct: 196 FVRGDAPLRGFDPDIRETLVEEMEK----KGIRLHTNAVPKAVEKNADGSLTL-TLEDGE 250
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
T+ D +I IG NT+ L+ GV+LN + ++V+EY TNVPG+YA GD+
Sbjct: 251 TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 79.6 bits (197), Expect = 9e-15
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 61/344 (17%)
Query: 9 VTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 68
V I+ V ++ DE K + K G++ V+G GP+G L + G
Sbjct: 509 VNIRELKKVALEKGWDEYKQRWHK----PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP 564
Query: 69 GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIK--GKKIISDSEL 125
++ + VK + Q I A+ I +DI +K G K
Sbjct: 565 VTVFEREEN---AGGVVKNIIPQFRIPAELI---------QHDIEFVKAHGVKFEFGCSP 612
Query: 126 NEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF-YLRTVEDANNIAPHITPES 183
+ +L+ + + + +A G+ + G V L +E+ N +
Sbjct: 613 DLTVEQLK---NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKN-----KGTA 664
Query: 184 -----NVVVIGSSFIGMEAA--AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 236
+VVV+G M+AA A V+ VTVV R + +E +
Sbjct: 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY-----EEALE 719
Query: 237 KGVKFVMKANVSSFEKNEK-----------------NDVTAANLDNGTTIPADLVIVGIG 279
GV+F N SF+ + V T+ AD VI IG
Sbjct: 720 DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGET---VTLEADTVITAIG 776
Query: 280 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
++T L G+ L+ + VV+ ET++ VY GD+ P
Sbjct: 777 EQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
Score = 79.6 bits (197), Expect = 9e-15
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 61/344 (17%)
Query: 561 VTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 620
V I+ V ++ DE K + K G++ V+G GP+G L + G
Sbjct: 509 VNIRELKKVALEKGWDEYKQRWHK----PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP 564
Query: 621 GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIK--GKKIISDSEL 677
++ + VK + Q I A+ I +DI +K G K
Sbjct: 565 VTVFEREEN---AGGVVKNIIPQFRIPAELI---------QHDIEFVKAHGVKFEFGCSP 612
Query: 678 NEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF-YLRTVEDANNIAPHITPES 735
+ +L+ + + + +A G+ + G V L +E+ N +
Sbjct: 613 DLTVEQLK---NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKN-----KGTA 664
Query: 736 -----NVVVIGSSFIGMEAA--AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 788
+VVV+G M+AA A V+ VTVV R + +E +
Sbjct: 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY-----EEALE 719
Query: 789 KGVKFVMKANVSSFEKNEK-----------------NDVTAANLDNGTTIPADLVIVGIG 831
GV+F N SF+ + V T+ AD VI IG
Sbjct: 720 DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGET---VTLEADTVITAIG 776
Query: 832 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
++T L G+ L+ + VV+ ET++ VY GD+ P
Sbjct: 777 EQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
Score = 79.6 bits (197), Expect = 9e-15
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 61/344 (17%)
Query: 1032 VTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 1091
V I+ V ++ DE K + K G++ V+G GP+G L + G
Sbjct: 509 VNIRELKKVALEKGWDEYKQRWHK----PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP 564
Query: 1092 GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIK--GKKIISDSEL 1148
++ + VK + Q I A+ I +DI +K G K
Sbjct: 565 VTVFEREEN---AGGVVKNIIPQFRIPAELI---------QHDIEFVKAHGVKFEFGCSP 612
Query: 1149 NEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF-YLRTVEDANNIAPHITPES 1206
+ +L+ + + + +A G+ + G V L +E+ N +
Sbjct: 613 DLTVEQLK---NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKN-----KGTA 664
Query: 1207 -----NVVVIGSSFIGMEAA--AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 1259
+VVV+G M+AA A V+ VTVV R + +E +
Sbjct: 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY-----EEALE 719
Query: 1260 KGVKFVMKANVSSFEKNEK-----------------NDVTAANLDNGTTIPADLVIVGIG 1302
GV+F N SF+ + V T+ AD VI IG
Sbjct: 720 DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGET---VTLEADTVITAIG 776
Query: 1303 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
++T L G+ L+ + VV+ ET++ VY GD+ P
Sbjct: 777 EQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 77.5 bits (191), Expect = 1e-14
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKL-YFITDENF------LPYDRVKLSKQLDIKADSIL 99
IVVG GATC +R+ + F D + LPY + + ++ + ++
Sbjct: 5 IVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY---YIGEVVEDRKYALA 61
Query: 100 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY--LATGSSPRTISQA 157
E+FY I V ++I+ ++ + L T+ F + Y L S
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121
Query: 158 DGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
+ F LR +ED + I I +V+G+ +I +E + T++ R +
Sbjct: 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHR-S 180
Query: 216 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275
+ + ++ + I + + + + + + + NE VT +G D++I
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE---VT---FKSGKVEHYDMII 234
Query: 276 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI-----------AYAPL 324
G+GT N+ +++ ++L+ + + VN+ ETNVP +YA GDI A PL
Sbjct: 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPL 294
Query: 325 HSFYNKNASIGHYQLAQYH 343
++ ASI Q+A
Sbjct: 295 AWGAHRAASIVAEQIAGND 313
Score = 77.5 bits (191), Expect = 1e-14
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKL-YFITDENF------LPYDRVKLSKQLDIKADSIL 651
IVVG GATC +R+ + F D + LPY + + ++ + ++
Sbjct: 5 IVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY---YIGEVVEDRKYALA 61
Query: 652 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY--LATGSSPRTISQA 709
E+FY I V ++I+ ++ + L T+ F + Y L S
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121
Query: 710 DGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
+ F LR +ED + I I +V+G+ +I +E + T++ R +
Sbjct: 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHR-S 180
Query: 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827
+ + ++ + I + + + + + + + NE VT +G D++I
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE---VT---FKSGKVEHYDMII 234
Query: 828 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI-----------AYAPL 876
G+GT N+ +++ ++L+ + + VN+ ETNVP +YA GDI A PL
Sbjct: 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPL 294
Query: 877 HSFYNKNASIGHYQLAQYH 895
++ ASI Q+A
Sbjct: 295 AWGAHRAASIVAEQIAGND 313
Score = 77.5 bits (191), Expect = 1e-14
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKL-YFITDENF------LPYDRVKLSKQLDIKADSIL 1122
IVVG GATC +R+ + F D + LPY + + ++ + ++
Sbjct: 5 IVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY---YIGEVVEDRKYALA 61
Query: 1123 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY--LATGSSPRTISQA 1180
E+FY I V ++I+ ++ + L T+ F + Y L S
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121
Query: 1181 DGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
+ F LR +ED + I I +V+G+ +I +E + T++ R +
Sbjct: 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHR-S 180
Query: 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298
+ + ++ + I + + + + + + + NE VT +G D++I
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE---VT---FKSGKVEHYDMII 234
Query: 1299 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI-----------AYAPL 1347
G+GT N+ +++ ++L+ + + VN+ ETNVP +YA GDI A PL
Sbjct: 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPL 294
Query: 1348 HSFYNKNASIGHYQLAQYH 1366
++ ASI Q+A
Sbjct: 295 AWGAHRAASIVAEQIAGND 313
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 77.5 bits (191), Expect = 2e-14
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 34/245 (13%)
Query: 89 KQLDIKADSILLRTEEFYKDN----DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 144
K+L D + R Y+ ++ G+ + N ++ L G + KI
Sbjct: 79 KKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGP--NTVEV-LASGKTYTAEKIL 135
Query: 145 LATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 199
+A G P N+ F+L T+ P+S +++ G +I +E A
Sbjct: 136 IAVGGRPPKPALPGHELGITSNEAFHLPTL-----------PKS-ILIAGGGYIAVEFAG 183
Query: 200 FCASKVKSVTVVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
T++ RG F + + + + + + +G++ + + +++S K++
Sbjct: 184 IFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEE----RGIRILPEDSITSISKDDDG 239
Query: 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 314
+ A L I AD+V+ G NTN L + GV LN A+ V+EY T+ P +Y
Sbjct: 240 RLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIY 298
Query: 315 AGGDI 319
A GD+
Sbjct: 299 AVGDV 303
Score = 77.5 bits (191), Expect = 2e-14
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 34/245 (13%)
Query: 641 KQLDIKADSILLRTEEFYKDN----DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696
K+L D + R Y+ ++ G+ + N ++ L G + KI
Sbjct: 79 KKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGP--NTVEV-LASGKTYTAEKIL 135
Query: 697 LATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 751
+A G P N+ F+L T+ P+S +++ G +I +E A
Sbjct: 136 IAVGGRPPKPALPGHELGITSNEAFHLPTL-----------PKS-ILIAGGGYIAVEFAG 183
Query: 752 FCASKVKSVTVVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
T++ RG F + + + + + + +G++ + + +++S K++
Sbjct: 184 IFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEE----RGIRILPEDSITSISKDDDG 239
Query: 809 DVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 866
+ A L I AD+V+ G NTN L + GV LN A+ V+EY T+ P +Y
Sbjct: 240 RLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIY 298
Query: 867 AGGDI 871
A GD+
Sbjct: 299 AVGDV 303
Score = 77.5 bits (191), Expect = 2e-14
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 34/245 (13%)
Query: 1112 KQLDIKADSILLRTEEFYKDN----DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 1167
K+L D + R Y+ ++ G+ + N ++ L G + KI
Sbjct: 79 KKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGP--NTVEV-LASGKTYTAEKIL 135
Query: 1168 LATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 1222
+A G P N+ F+L T+ P+S +++ G +I +E A
Sbjct: 136 IAVGGRPPKPALPGHELGITSNEAFHLPTL-----------PKS-ILIAGGGYIAVEFAG 183
Query: 1223 FCASKVKSVTVVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
T++ RG F + + + + + + +G++ + + +++S K++
Sbjct: 184 IFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEE----RGIRILPEDSITSISKDDDG 239
Query: 1280 DVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 1337
+ A L I AD+V+ G NTN L + GV LN A+ V+EY T+ P +Y
Sbjct: 240 RLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIY 298
Query: 1338 AGGDI 1342
A GD+
Sbjct: 299 AVGDV 303
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 76.8 bits (190), Expect = 3e-14
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 70/313 (22%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 96
V+G GP+G T L + G+ ++ + D+ +L K
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIF---EA----RDKAGGLLRYGIPEFRLPK------- 190
Query: 97 SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI- 154
I+ R E + + ++ D L+E L+ G + +++ TG PR +
Sbjct: 191 DIVDREVERLLKLGVEIRTNTEVGRDITLDE----LRAG----YDAVFIGTGAGLPRFLG 242
Query: 155 ---SQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSV 208
GV V +L V A + VVVIG M+AA A + +SV
Sbjct: 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGK-RVVVIGGGNTAMDAAR-TAKRLGAESV 300
Query: 209 TVVGR-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDN 265
T+V R G S +EV + + +GV+F A +E V ++
Sbjct: 301 TIVYRRGREEMPAS-EEEV-----EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354
Query: 266 G----------------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLE 307
G T+PADLVI IG N L G+ELN ++ ++
Sbjct: 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR 414
Query: 308 TNVPGVYAGGDIA 320
T++PGV+AGGDI
Sbjct: 415 TSLPGVFAGGDIV 427
Score = 76.8 bits (190), Expect = 3e-14
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 70/313 (22%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 648
V+G GP+G T L + G+ ++ + D+ +L K
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIF---EA----RDKAGGLLRYGIPEFRLPK------- 190
Query: 649 SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI- 706
I+ R E + + ++ D L+E L+ G + +++ TG PR +
Sbjct: 191 DIVDREVERLLKLGVEIRTNTEVGRDITLDE----LRAG----YDAVFIGTGAGLPRFLG 242
Query: 707 ---SQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSV 760
GV V +L V A + VVVIG M+AA A + +SV
Sbjct: 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGK-RVVVIGGGNTAMDAAR-TAKRLGAESV 300
Query: 761 TVVGR-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDN 817
T+V R G S +EV + + +GV+F A +E V ++
Sbjct: 301 TIVYRRGREEMPAS-EEEV-----EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354
Query: 818 G----------------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLE 859
G T+PADLVI IG N L G+ELN ++ ++
Sbjct: 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR 414
Query: 860 TNVPGVYAGGDIA 872
T++PGV+AGGDI
Sbjct: 415 TSLPGVFAGGDIV 427
Score = 76.8 bits (190), Expect = 3e-14
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 70/313 (22%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 1119
V+G GP+G T L + G+ ++ + D+ +L K
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIF---EA----RDKAGGLLRYGIPEFRLPK------- 190
Query: 1120 SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI- 1177
I+ R E + + ++ D L+E L+ G + +++ TG PR +
Sbjct: 191 DIVDREVERLLKLGVEIRTNTEVGRDITLDE----LRAG----YDAVFIGTGAGLPRFLG 242
Query: 1178 ---SQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSV 1231
GV V +L V A + VVVIG M+AA A + +SV
Sbjct: 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGK-RVVVIGGGNTAMDAAR-TAKRLGAESV 300
Query: 1232 TVVGR-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDN 1288
T+V R G S +EV + + +GV+F A +E V ++
Sbjct: 301 TIVYRRGREEMPAS-EEEV-----EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354
Query: 1289 G----------------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLE 1330
G T+PADLVI IG N L G+ELN ++ ++
Sbjct: 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR 414
Query: 1331 TNVPGVYAGGDIA 1343
T++PGV+AGGDI
Sbjct: 415 TSLPGVFAGGDIV 427
>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske domain has a
[2Fe-2S] centre. Two conserved cysteines that one Fe ion
while the other Fe ion is coordinated by two conserved
histidines.
Length = 99
Score = 67.9 bits (166), Expect = 1e-13
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 563
+ A+ C+H GAPL +G +G G CP+HG F+++TG + P L Y V
Sbjct: 37 EVRALSNVCTHRGAPLSRGGVGNEKGGFECPYHGWRFDLSTGKLVGGPAPRPLKTYPVLE 96
Query: 564 QND 566
+
Sbjct: 97 EVG 99
Score = 67.9 bits (166), Expect = 1e-13
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034
+ A+ C+H GAPL +G +G G CP+HG F+++TG + P L Y V
Sbjct: 37 EVRALSNVCTHRGAPLSRGGVGNEKGGFECPYHGWRFDLSTGKLVGGPAPRPLKTYPVLE 96
Query: 1035 QND 1037
+
Sbjct: 97 EVG 99
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 73.3 bits (181), Expect = 3e-13
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGV 160
Y+ N + +I+G+ D + +++ DG + KI +ATGS P D
Sbjct: 101 RGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD-- 156
Query: 161 NKVFYLRTVEDANNI--APHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA-- 215
F + D+++I H P S +++ G+ IG E A+ F A VK VT++
Sbjct: 157 ---FDHPRIYDSDSILSLDH-LPRS-LIIYGAGVIGCEYASIFAALGVK-VTLINTRDRL 210
Query: 216 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275
+ F L E+ + ++ GV V E + + +L +G I AD ++
Sbjct: 211 LSF---LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIV--HLKSGKKIKADCLL 265
Query: 276 VGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333
G NT+ L + G+E + + + VNE +T VP +YA GD+
Sbjct: 266 YANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV-------------- 311
Query: 334 IGHYQLA-----QYHGRIAALNMVE 353
IG LA Q GRIAA + V
Sbjct: 312 IGFPSLASASMDQ--GRIAAQHAVG 334
Score = 73.3 bits (181), Expect = 3e-13
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGV 712
Y+ N + +I+G+ D + +++ DG + KI +ATGS P D
Sbjct: 101 RGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD-- 156
Query: 713 NKVFYLRTVEDANNI--APHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA-- 767
F + D+++I H P S +++ G+ IG E A+ F A VK VT++
Sbjct: 157 ---FDHPRIYDSDSILSLDH-LPRS-LIIYGAGVIGCEYASIFAALGVK-VTLINTRDRL 210
Query: 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827
+ F L E+ + ++ GV V E + + +L +G I AD ++
Sbjct: 211 LSF---LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIV--HLKSGKKIKADCLL 265
Query: 828 VGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885
G NT+ L + G+E + + + VNE +T VP +YA GD+
Sbjct: 266 YANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV-------------- 311
Query: 886 IGHYQLA-----QYHGRIAALNMVE 905
IG LA Q GRIAA + V
Sbjct: 312 IGFPSLASASMDQ--GRIAAQHAVG 334
Score = 73.3 bits (181), Expect = 3e-13
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGV 1183
Y+ N + +I+G+ D + +++ DG + KI +ATGS P D
Sbjct: 101 RGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD-- 156
Query: 1184 NKVFYLRTVEDANNI--APHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA-- 1238
F + D+++I H P S +++ G+ IG E A+ F A VK VT++
Sbjct: 157 ---FDHPRIYDSDSILSLDH-LPRS-LIIYGAGVIGCEYASIFAALGVK-VTLINTRDRL 210
Query: 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298
+ F L E+ + ++ GV V E + + +L +G I AD ++
Sbjct: 211 LSF---LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIV--HLKSGKKIKADCLL 265
Query: 1299 VGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356
G NT+ L + G+E + + + VNE +T VP +YA GD+
Sbjct: 266 YANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV-------------- 311
Query: 1357 IGHYQLA-----QYHGRIAALNMVE 1376
IG LA Q GRIAA + V
Sbjct: 312 IGFPSLASASMDQ--GRIAAQHAVG 334
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 73.1 bits (180), Expect = 4e-13
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVF 164
K N I I G +D+ N ++ L DG ++ F +ATGSS R + G +
Sbjct: 103 KKNKITEIHGYGTFTDA--NTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTSLSE 157
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQES 221
+ T E+ I P+S +V+ G+ IGME A + VT+V R A+P ++
Sbjct: 158 NVVTYEE--QILSRELPKS-IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED- 212
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGT-TIPADLVIVGIG 279
EV + I K ++ GVK + V S + N K VT + D + AD V+ IG
Sbjct: 213 --AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270
Query: 280 TVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
Y L+ GV L + A+ +++Y+ TNVP +YA GD+
Sbjct: 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312
Score = 73.1 bits (180), Expect = 4e-13
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVF 716
K N I I G +D+ N ++ L DG ++ F +ATGSS R + G +
Sbjct: 103 KKNKITEIHGYGTFTDA--NTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTSLSE 157
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQES 773
+ T E+ I P+S +V+ G+ IGME A + VT+V R A+P ++
Sbjct: 158 NVVTYEE--QILSRELPKS-IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED- 212
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGT-TIPADLVIVGIG 831
EV + I K ++ GVK + V S + N K VT + D + AD V+ IG
Sbjct: 213 --AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270
Query: 832 TVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
Y L+ GV L + A+ +++Y+ TNVP +YA GD+
Sbjct: 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312
Score = 73.1 bits (180), Expect = 4e-13
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVF 1187
K N I I G +D+ N ++ L DG ++ F +ATGSS R + G +
Sbjct: 103 KKNKITEIHGYGTFTDA--NTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTSLSE 157
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQES 1244
+ T E+ I P+S +V+ G+ IGME A + VT+V R A+P ++
Sbjct: 158 NVVTYEE--QILSRELPKS-IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED- 212
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGT-TIPADLVIVGIG 1302
EV + I K ++ GVK + V S + N K VT + D + AD V+ IG
Sbjct: 213 --AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270
Query: 1303 TVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
Y L+ GV L + A+ +++Y+ TNVP +YA GD+
Sbjct: 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 71.9 bits (177), Expect = 7e-13
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-----KQLDIKADSILLR 101
+++G G + V+ +R+ + IT ++ Y++ LS Q D
Sbjct: 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQR--ADDLTRQS 63
Query: 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
EF + ++ + ++D + + +K Q + K+ LATG+S + G
Sbjct: 64 AGEFAEQFNL-RLFPHTWVTDIDAEAQVVKSQGNQ-WQYDKLVLATGASA-FVPPIPGRE 120
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 221
+ L + ++ + V+V+G IG E A K+VT+V A
Sbjct: 121 LMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 281
+ EV R+ GV ++K+ + EK + A LD+G +I D VI G
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLR 238
Query: 282 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
NT G+ +N + +VV+ YL+T+ P +YA GD A
Sbjct: 239 PNTALARRAGLAVN--RGIVVDSYLQTSAPDIYALGDCA 275
Score = 71.9 bits (177), Expect = 7e-13
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-----KQLDIKADSILLR 653
+++G G + V+ +R+ + IT ++ Y++ LS Q D
Sbjct: 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQR--ADDLTRQS 63
Query: 654 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713
EF + ++ + ++D + + +K Q + K+ LATG+S + G
Sbjct: 64 AGEFAEQFNL-RLFPHTWVTDIDAEAQVVKSQGNQ-WQYDKLVLATGASA-FVPPIPGRE 120
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 773
+ L + ++ + V+V+G IG E A K+VT+V A
Sbjct: 121 LMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833
+ EV R+ GV ++K+ + EK + A LD+G +I D VI G
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLR 238
Query: 834 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
NT G+ +N + +VV+ YL+T+ P +YA GD A
Sbjct: 239 PNTALARRAGLAVN--RGIVVDSYLQTSAPDIYALGDCA 275
Score = 71.9 bits (177), Expect = 7e-13
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-----KQLDIKADSILLR 1124
+++G G + V+ +R+ + IT ++ Y++ LS Q D
Sbjct: 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQR--ADDLTRQS 63
Query: 1125 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 1184
EF + ++ + ++D + + +K Q + K+ LATG+S + G
Sbjct: 64 AGEFAEQFNL-RLFPHTWVTDIDAEAQVVKSQGNQ-WQYDKLVLATGASA-FVPPIPGRE 120
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 1244
+ L + ++ + V+V+G IG E A K+VT+V A
Sbjct: 121 LMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304
+ EV R+ GV ++K+ + EK + A LD+G +I D VI G
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLR 238
Query: 1305 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
NT G+ +N + +VV+ YL+T+ P +YA GD A
Sbjct: 239 PNTALARRAGLAVN--RGIVVDSYLQTSAPDIYALGDCA 275
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 72.3 bits (177), Expect = 7e-13
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)
Query: 83 DRVKLSKQLDIKADSIL-LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSI 138
DR L Q + + + + + ++N I V+ G+ D + L DG ++
Sbjct: 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE--RTLTVTLNDGGEQTV 139
Query: 139 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 198
F + ++ TG+ P G+ + YL + + + PE ++VIG+S + +E A
Sbjct: 140 HFDRAFIGTGARPAE-PPVPGLAETPYLTS---TSALELDHIPER-LLVIGASVVALELA 194
Query: 199 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 258
A VTV+ R V QE VGE I F +G++ + + S + N + +
Sbjct: 195 QAFARLGSRVTVLARSRVLSQED--PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI 252
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK-AVVVNEYLETNVPGVYAGG 317
N T+ A+ ++V G NT L+ + + + ++ A+ ++E+L+T V G+YA G
Sbjct: 253 LETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAG 309
Query: 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIPFFWTMLFGVGFRF 375
D P + +A G AA+NM + LS +P V F
Sbjct: 310 DCTDQPQFVY-----------VAAAGGSRAAINMTGGDASLDLSAMP-------EVIFT- 350
Query: 376 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 412
QV VG EA Y + L + V
Sbjct: 351 ------DPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381
Score = 72.3 bits (177), Expect = 7e-13
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)
Query: 635 DRVKLSKQLDIKADSIL-LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSI 690
DR L Q + + + + + ++N I V+ G+ D + L DG ++
Sbjct: 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE--RTLTVTLNDGGEQTV 139
Query: 691 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750
F + ++ TG+ P G+ + YL + + + PE ++VIG+S + +E A
Sbjct: 140 HFDRAFIGTGARPAE-PPVPGLAETPYLTS---TSALELDHIPER-LLVIGASVVALELA 194
Query: 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
A VTV+ R V QE VGE I F +G++ + + S + N + +
Sbjct: 195 QAFARLGSRVTVLARSRVLSQED--PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI 252
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK-AVVVNEYLETNVPGVYAGG 869
N T+ A+ ++V G NT L+ + + + ++ A+ ++E+L+T V G+YA G
Sbjct: 253 LETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAG 309
Query: 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIPFFWTMLFGVGFRF 927
D P + +A G AA+NM + LS +P V F
Sbjct: 310 DCTDQPQFVY-----------VAAAGGSRAAINMTGGDASLDLSAMP-------EVIFT- 350
Query: 928 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 964
QV VG EA Y + L + V
Sbjct: 351 ------DPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381
Score = 72.3 bits (177), Expect = 7e-13
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)
Query: 1106 DRVKLSKQLDIKADSIL-LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSI 1161
DR L Q + + + + + ++N I V+ G+ D + L DG ++
Sbjct: 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE--RTLTVTLNDGGEQTV 139
Query: 1162 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221
F + ++ TG+ P G+ + YL + + + PE ++VIG+S + +E A
Sbjct: 140 HFDRAFIGTGARPAE-PPVPGLAETPYLTS---TSALELDHIPER-LLVIGASVVALELA 194
Query: 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
A VTV+ R V QE VGE I F +G++ + + S + N + +
Sbjct: 195 QAFARLGSRVTVLARSRVLSQED--PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI 252
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK-AVVVNEYLETNVPGVYAGG 1340
N T+ A+ ++V G NT L+ + + + ++ A+ ++E+L+T V G+YA G
Sbjct: 253 LETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAG 309
Query: 1341 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIPFFWTMLFGVGFRF 1398
D P + +A G AA+NM + LS +P V F
Sbjct: 310 DCTDQPQFVY-----------VAAAGGSRAAINMTGGDASLDLSAMP-------EVIFT- 350
Query: 1399 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 1435
QV VG EA Y + L + V
Sbjct: 351 ------DPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 71.7 bits (176), Expect = 2e-12
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 13/287 (4%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQLDI-KADS 97
+K ++G G G +E L + IT +E + YDRV LS A+
Sbjct: 2 SKVRLAIIGNGMVGHRFIEDLLDKADAAN-FDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
Query: 98 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--RTIS 155
+ L E FY+ + I V+ G++ I+ + EK I G ++ + K+ +ATGS P I
Sbjct: 61 LSLVREGFYEKHGIKVLVGERAITINR-QEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119
Query: 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVT--VVGR 213
++ F RT+ED N I V+G +G+EAA A K V V+
Sbjct: 120 GSET-QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG--ALKNLGVETHVIEF 176
Query: 214 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273
+ E L + GE++ + ES GV+ N + +G+ + D
Sbjct: 177 APMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236
Query: 274 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
++ G G+ + + +V+N+ +T+ P +YA G+ A
Sbjct: 237 IVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECA 283
Score = 71.7 bits (176), Expect = 2e-12
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 13/287 (4%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQLDI-KADS 649
+K ++G G G +E L + IT +E + YDRV LS A+
Sbjct: 2 SKVRLAIIGNGMVGHRFIEDLLDKADAAN-FDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
Query: 650 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--RTIS 707
+ L E FY+ + I V+ G++ I+ + EK I G ++ + K+ +ATGS P I
Sbjct: 61 LSLVREGFYEKHGIKVLVGERAITINR-QEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119
Query: 708 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVT--VVGR 765
++ F RT+ED N I V+G +G+EAA A K V V+
Sbjct: 120 GSET-QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG--ALKNLGVETHVIEF 176
Query: 766 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 825
+ E L + GE++ + ES GV+ N + +G+ + D
Sbjct: 177 APMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236
Query: 826 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
++ G G+ + + +V+N+ +T+ P +YA G+ A
Sbjct: 237 IVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECA 283
Score = 71.7 bits (176), Expect = 2e-12
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 13/287 (4%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQLDI-KADS 1120
+K ++G G G +E L + IT +E + YDRV LS A+
Sbjct: 2 SKVRLAIIGNGMVGHRFIEDLLDKADAAN-FDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
Query: 1121 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--RTIS 1178
+ L E FY+ + I V+ G++ I+ + EK I G ++ + K+ +ATGS P I
Sbjct: 61 LSLVREGFYEKHGIKVLVGERAITINR-QEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119
Query: 1179 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVT--VVGR 1236
++ F RT+ED N I V+G +G+EAA A K V V+
Sbjct: 120 GSET-QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG--ALKNLGVETHVIEF 176
Query: 1237 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 1296
+ E L + GE++ + ES GV+ N + +G+ + D
Sbjct: 177 APMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236
Query: 1297 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
++ G G+ + + +V+N+ +T+ P +YA G+ A
Sbjct: 237 IVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECA 283
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
VVV+G +IG+E A+ A VTVV R +E+ + + + E G++ ++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 244 KANVSSFEKNEKNDVTAANLDNG 266
V E N V +G
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
VVV+G +IG+E A+ A VTVV R +E+ + + + E G++ ++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 796 KANVSSFEKNEKNDVTAANLDNG 818
V E N V +G
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
VVV+G +IG+E A+ A VTVV R +E+ + + + E G++ ++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 1267 KANVSSFEKNEKNDVTAANLDNG 1289
V E N V +G
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 70.2 bits (172), Expect = 7e-12
Identities = 81/366 (22%), Positives = 130/366 (35%), Gaps = 48/366 (13%)
Query: 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSI 98
+ V+G GP+G + L + G F E P VK + + I A+SI
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEK--PGGVVKNIIPEFRISAESI 590
Query: 99 LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQA 157
+ E K + + G +L ++K Q + + LA G+ +
Sbjct: 591 Q-KDIELVKFHGVEFKYG----CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLE 640
Query: 158 DGVNKVF-YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA--AFCASKVKSVTVVGRG 214
G +V L + +VVV+G M+AA A V+ VTVV R
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700
Query: 215 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF-------------EKNEKNDVTAA 261
+ + +E+ E + GV F + SF E +
Sbjct: 701 TKRYMPASREELEEALED-----GVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV 755
Query: 262 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIA 320
+PAD VI +G ++T+ L G+ L+ VVN ETN+ V+ GD
Sbjct: 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA 380
P A+I A GR AA ++ ++ S + + + V
Sbjct: 816 RGP--------ATIVE---AIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKK 864
Query: 381 GHTQVD 386
G +D
Sbjct: 865 GILVID 870
Score = 70.2 bits (172), Expect = 7e-12
Identities = 81/366 (22%), Positives = 130/366 (35%), Gaps = 48/366 (13%)
Query: 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSI 650
+ V+G GP+G + L + G F E P VK + + I A+SI
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEK--PGGVVKNIIPEFRISAESI 590
Query: 651 LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQA 709
+ E K + + G +L ++K Q + + LA G+ +
Sbjct: 591 Q-KDIELVKFHGVEFKYG----CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLE 640
Query: 710 DGVNKVF-YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA--AFCASKVKSVTVVGRG 766
G +V L + +VVV+G M+AA A V+ VTVV R
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700
Query: 767 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF-------------EKNEKNDVTAA 813
+ + +E+ E + GV F + SF E +
Sbjct: 701 TKRYMPASREELEEALED-----GVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV 755
Query: 814 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIA 872
+PAD VI +G ++T+ L G+ L+ VVN ETN+ V+ GD
Sbjct: 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA 932
P A+I A GR AA ++ ++ S + + + V
Sbjct: 816 RGP--------ATIVE---AIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKK 864
Query: 933 GHTQVD 938
G +D
Sbjct: 865 GILVID 870
Score = 70.2 bits (172), Expect = 7e-12
Identities = 81/366 (22%), Positives = 130/366 (35%), Gaps = 48/366 (13%)
Query: 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSI 1121
+ V+G GP+G + L + G F E P VK + + I A+SI
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEK--PGGVVKNIIPEFRISAESI 590
Query: 1122 LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQA 1180
+ E K + + G +L ++K Q + + LA G+ +
Sbjct: 591 Q-KDIELVKFHGVEFKYG----CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLE 640
Query: 1181 DGVNKVF-YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA--AFCASKVKSVTVVGRG 1237
G +V L + +VVV+G M+AA A V+ VTVV R
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700
Query: 1238 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF-------------EKNEKNDVTAA 1284
+ + +E+ E + GV F + SF E +
Sbjct: 701 TKRYMPASREELEEALED-----GVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV 755
Query: 1285 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIA 1343
+PAD VI +G ++T+ L G+ L+ VVN ETN+ V+ GD
Sbjct: 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA 1403
P A+I A GR AA ++ ++ S + + + V
Sbjct: 816 RGP--------ATIVE---AIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKK 864
Query: 1404 GHTQVD 1409
G +D
Sbjct: 865 GILVID 870
>gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO)
family, Rieske ferredoxin component; composed of the
Rieske ferredoxin component of some three-component RO
systems including biphenyl dioxygenase (BPDO) and
carbazole 1,9a-dioxygenase (CARDO). The RO family
comprise a large class of aromatic ring-hydroxylating
dioxygenases found predominantly in microorganisms. These
enzymes enable microorganisms to tolerate and even
exclusively utilize aromatic compounds for growth. ROs
consist of two or three components: reductase, oxygenase,
and ferredoxin (in some cases) components. The ferredoxin
component contains either a plant-type or Rieske-type
[2Fe-2S] cluster. The Rieske ferredoxin component in this
family carries an electron from the RO reductase
component to the terminal RO oxygenase component. BPDO
degrades biphenyls and polychlorinated biphenyls. BPDO
ferredoxin (BphF) has structural features consistent with
a minimal and perhaps archetypical Rieske protein in that
the insertions that give other Rieske proteins unique
structural features are missing. CARDO catalyzes
dihydroxylation at the C1 and C9a positions of carbazole.
Rieske ferredoxins are found as subunits of membrane
oxidase complexes, cis-dihydrodiol-forming aromatic
dioxygenases, bacterial assimilatory nitrite reductases,
and arsenite oxidase. Rieske ferredoxins are also found
as soluble electron carriers in bacterial dioxygenase and
monooxygenase complexes.
Length = 98
Score = 62.5 bits (153), Expect = 8e-12
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 956 DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT 1015
+ + VG P+A + YA C+H A L +G + G + CP HG F++ T
Sbjct: 13 GEPKRV-DVGGRPIAVYRVDGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRT 71
Query: 1016 GDIEDFPGMDSLPCYKVTIQNDD 1038
G P + L Y V +++ D
Sbjct: 72 GKALSLPATEPLKTYPVKVEDGD 94
Score = 61.7 bits (151), Expect = 2e-11
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
YA C+H A L +G + G + CP HG F++ TG P + L Y V +++
Sbjct: 33 EFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKVED 92
Query: 566 DD 567
D
Sbjct: 93 GD 94
>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and
ring-hydroxylating dioxygenases [Inorganic ion transport
and metabolism / General function prediction only].
Length = 106
Score = 62.7 bits (153), Expect = 8e-12
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 974 AERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
A+ ++A+ +C H GAPL +G + GD V CP HGA F++ TG+ + P +L Y V
Sbjct: 35 ADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPV 94
Query: 1033 TIQNDDSVVVQ 1043
+ V V
Sbjct: 95 RV-EGGRVFVD 104
Score = 62.0 bits (151), Expect = 2e-11
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 507 IYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
++A+ +C H GAPL +G + GD V CP HGA F++ TG+ + P +L Y V +
Sbjct: 39 VFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRV-E 97
Query: 566 DDSVVVQ 572
V V
Sbjct: 98 GGRVFVD 104
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 67.6 bits (166), Expect = 2e-11
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 145 LATGSSPRTIS--QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFC 201
+ATGS P + DG Y+ + ++A ++ P+S +V++G IG+E A+
Sbjct: 148 IATGSRPVELPGLPFDGE----YVISSDEA--LSLETLPKS-LVIVGGGVIGLEWASMLA 200
Query: 202 ASKVKSVTVVGRGAVPFQESLGKEVGERI------------TKLFESKGVKFVMKANVSS 249
V+ VTVV E +RI +L + GV+ V A V
Sbjct: 201 DFGVE-VTVV-------------EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLG 246
Query: 250 FEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-----LNGQKAVVV 302
+ V NG T+ AD V+V +G NT +G G+E + G + +
Sbjct: 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT---EGIGLENTDIDVEG-GFIQI 302
Query: 303 NEYLETNVPGVYAGGDIA 320
+++ +T +YA GD+
Sbjct: 303 DDFCQTKERHIYAIGDVI 320
Score = 67.6 bits (166), Expect = 2e-11
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 697 LATGSSPRTIS--QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFC 753
+ATGS P + DG Y+ + ++A ++ P+S +V++G IG+E A+
Sbjct: 148 IATGSRPVELPGLPFDGE----YVISSDEA--LSLETLPKS-LVIVGGGVIGLEWASMLA 200
Query: 754 ASKVKSVTVVGRGAVPFQESLGKEVGERI------------TKLFESKGVKFVMKANVSS 801
V+ VTVV E +RI +L + GV+ V A V
Sbjct: 201 DFGVE-VTVV-------------EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLG 246
Query: 802 FEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-----LNGQKAVVV 854
+ V NG T+ AD V+V +G NT +G G+E + G + +
Sbjct: 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT---EGIGLENTDIDVEG-GFIQI 302
Query: 855 NEYLETNVPGVYAGGDIA 872
+++ +T +YA GD+
Sbjct: 303 DDFCQTKERHIYAIGDVI 320
Score = 67.6 bits (166), Expect = 2e-11
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 1168 LATGSSPRTIS--QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFC 1224
+ATGS P + DG Y+ + ++A ++ P+S +V++G IG+E A+
Sbjct: 148 IATGSRPVELPGLPFDGE----YVISSDEA--LSLETLPKS-LVIVGGGVIGLEWASMLA 200
Query: 1225 ASKVKSVTVVGRGAVPFQESLGKEVGERI------------TKLFESKGVKFVMKANVSS 1272
V+ VTVV E +RI +L + GV+ V A V
Sbjct: 201 DFGVE-VTVV-------------EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLG 246
Query: 1273 FEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-----LNGQKAVVV 1325
+ V NG T+ AD V+V +G NT +G G+E + G + +
Sbjct: 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT---EGIGLENTDIDVEG-GFIQI 302
Query: 1326 NEYLETNVPGVYAGGDIA 1343
+++ +T +YA GD+
Sbjct: 303 DDFCQTKERHIYAIGDVI 320
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 66.5 bits (162), Expect = 5e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 138 IDFTKIYLATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 192
+ I LATGS P+ I N+ FYL P V+ +G F
Sbjct: 150 LQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDE------------PPRRVLTVGGGF 197
Query: 193 IGME-AAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 249
I +E A F A K + VT+ R + + +TK + G+ + N +
Sbjct: 198 ISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGFDSTLRKELTKQLRANGINIMTNENPAK 256
Query: 250 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLE 307
N + ++G T+ D+V++ IG V T L D GVEL + A+ V+E+
Sbjct: 257 VTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR 315
Query: 308 TNVPGVYAGGDI 319
TNVP +YA GD+
Sbjct: 316 TNVPNIYAIGDV 327
Score = 66.5 bits (162), Expect = 5e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 690 IDFTKIYLATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744
+ I LATGS P+ I N+ FYL P V+ +G F
Sbjct: 150 LQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDE------------PPRRVLTVGGGF 197
Query: 745 IGME-AAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 801
I +E A F A K + VT+ R + + +TK + G+ + N +
Sbjct: 198 ISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGFDSTLRKELTKQLRANGINIMTNENPAK 256
Query: 802 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLE 859
N + ++G T+ D+V++ IG V T L D GVEL + A+ V+E+
Sbjct: 257 VTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR 315
Query: 860 TNVPGVYAGGDI 871
TNVP +YA GD+
Sbjct: 316 TNVPNIYAIGDV 327
Score = 66.5 bits (162), Expect = 5e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 1161 IDFTKIYLATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+ I LATGS P+ I N+ FYL P V+ +G F
Sbjct: 150 LQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDE------------PPRRVLTVGGGF 197
Query: 1216 IGME-AAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
I +E A F A K + VT+ R + + +TK + G+ + N +
Sbjct: 198 ISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGFDSTLRKELTKQLRANGINIMTNENPAK 256
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLE 1330
N + ++G T+ D+V++ IG V T L D GVEL + A+ V+E+
Sbjct: 257 VTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR 315
Query: 1331 TNVPGVYAGGDI 1342
TNVP +YA GD+
Sbjct: 316 TNVPNIYAIGDV 327
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 64.4 bits (157), Expect = 2e-10
Identities = 89/332 (26%), Positives = 135/332 (40%), Gaps = 73/332 (21%)
Query: 35 MAKLSSG----------NKDTF--IVVGGGPSGATC-VETLRQNGFTG---------KLY 72
+AK+ +G KD + +VVGGGP+GA + R+ TG L
Sbjct: 191 LAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLD 250
Query: 73 FITDENFL--PY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 129
+ ENF+ P + KL+ L E K D+ V+ ++ +
Sbjct: 251 TMGIENFISVPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEG 299
Query: 130 ----IKLQDGTSIDFTKIYLATGSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH--- 178
++L +G + + LATG+ R ++ + + NK V Y PH
Sbjct: 300 GLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAY----------CPHCDG 349
Query: 179 -ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERITKLFES 236
+ V VIG G+EAA A V+ VT++ F L V + KL
Sbjct: 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL-----EFAPELKADAVLQD--KLRSL 402
Query: 237 KGVKFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADL--VIVGIGTVLNTNYLDGKG 291
V + A + K + + VT +G +L V V IG + NT +L G
Sbjct: 403 PNVTIITNAQTTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA- 460
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
VELN + ++V+ ETNVPGV+A GD P
Sbjct: 461 VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
Score = 64.4 bits (157), Expect = 2e-10
Identities = 89/332 (26%), Positives = 135/332 (40%), Gaps = 73/332 (21%)
Query: 587 MAKLSSG----------NKDTF--IVVGGGPSGATC-VETLRQNGFTG---------KLY 624
+AK+ +G KD + +VVGGGP+GA + R+ TG L
Sbjct: 191 LAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLD 250
Query: 625 FITDENFL--PY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 681
+ ENF+ P + KL+ L E K D+ V+ ++ +
Sbjct: 251 TMGIENFISVPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEG 299
Query: 682 ----IKLQDGTSIDFTKIYLATGSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH--- 730
++L +G + + LATG+ R ++ + + NK V Y PH
Sbjct: 300 GLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAY----------CPHCDG 349
Query: 731 -ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERITKLFES 788
+ V VIG G+EAA A V+ VT++ F L V + KL
Sbjct: 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL-----EFAPELKADAVLQD--KLRSL 402
Query: 789 KGVKFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADL--VIVGIGTVLNTNYLDGKG 843
V + A + K + + VT +G +L V V IG + NT +L G
Sbjct: 403 PNVTIITNAQTTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA- 460
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
VELN + ++V+ ETNVPGV+A GD P
Sbjct: 461 VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
Score = 64.4 bits (157), Expect = 2e-10
Identities = 89/332 (26%), Positives = 135/332 (40%), Gaps = 73/332 (21%)
Query: 1058 MAKLSSG----------NKDTF--IVVGGGPSGATC-VETLRQNGFTG---------KLY 1095
+AK+ +G KD + +VVGGGP+GA + R+ TG L
Sbjct: 191 LAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLD 250
Query: 1096 FITDENFL--PY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 1152
+ ENF+ P + KL+ L E K D+ V+ ++ +
Sbjct: 251 TMGIENFISVPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEG 299
Query: 1153 ----IKLQDGTSIDFTKIYLATGSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH--- 1201
++L +G + + LATG+ R ++ + + NK V Y PH
Sbjct: 300 GLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAY----------CPHCDG 349
Query: 1202 -ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERITKLFES 1259
+ V VIG G+EAA A V+ VT++ F L V + KL
Sbjct: 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL-----EFAPELKADAVLQD--KLRSL 402
Query: 1260 KGVKFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADL--VIVGIGTVLNTNYLDGKG 1314
V + A + K + + VT +G +L V V IG + NT +L G
Sbjct: 403 PNVTIITNAQTTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA- 460
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
VELN + ++V+ ETNVPGV+A GD P
Sbjct: 461 VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 63.6 bits (155), Expect = 6e-10
Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 77/341 (22%)
Query: 25 ELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYF 73
E ++ +P +G K V+G GP+G + L + G+ G L +
Sbjct: 415 ERESGNISVPEVAEKNGKK--VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
Query: 74 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 133
E LP V D++ +++ +F D VI GK I + EL E+
Sbjct: 473 GIPEFRLPKKIV------DVEIENLKKLGVKFETD----VIVGKTITIE-ELEEEG---- 517
Query: 134 DGTSIDFTKIYLATGSS-PRTIS-QADGVNKVF----YLRTVE--DANN--IAPHITPES 183
F I++A+G+ P ++ + N V YL V DA + I
Sbjct: 518 ------FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571
Query: 184 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGAVPFQESLGKEVGERITKLFESK--GV 239
V V+G M++A A ++ + VT+V R + +E+ R+ ++ +K G+
Sbjct: 572 KVAVVGGGNTAMDSAR-TAKRLGAERVTIVYRRS-------EEEMPARLEEVKHAKEEGI 623
Query: 240 KFVMKANVSSFEKNEKNDVTAANLD--------------------NGTTIPADLVIVGIG 279
+F+ N + +EK V L + T+ DLVIV +G
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
Query: 280 TVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
N G+ELN + +VV+E +++++PG+YAGGDI
Sbjct: 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
Score = 63.6 bits (155), Expect = 6e-10
Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 77/341 (22%)
Query: 577 ELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYF 625
E ++ +P +G K V+G GP+G + L + G+ G L +
Sbjct: 415 ERESGNISVPEVAEKNGKK--VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
Query: 626 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 685
E LP V D++ +++ +F D VI GK I + EL E+
Sbjct: 473 GIPEFRLPKKIV------DVEIENLKKLGVKFETD----VIVGKTITIE-ELEEEG---- 517
Query: 686 DGTSIDFTKIYLATGSS-PRTIS-QADGVNKVF----YLRTVE--DANN--IAPHITPES 735
F I++A+G+ P ++ + N V YL V DA + I
Sbjct: 518 ------FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571
Query: 736 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGAVPFQESLGKEVGERITKLFESK--GV 791
V V+G M++A A ++ + VT+V R + +E+ R+ ++ +K G+
Sbjct: 572 KVAVVGGGNTAMDSAR-TAKRLGAERVTIVYRRS-------EEEMPARLEEVKHAKEEGI 623
Query: 792 KFVMKANVSSFEKNEKNDVTAANLD--------------------NGTTIPADLVIVGIG 831
+F+ N + +EK V L + T+ DLVIV +G
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
Query: 832 TVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
N G+ELN + +VV+E +++++PG+YAGGDI
Sbjct: 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
Score = 63.6 bits (155), Expect = 6e-10
Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 77/341 (22%)
Query: 1048 ELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYF 1096
E ++ +P +G K V+G GP+G + L + G+ G L +
Sbjct: 415 ERESGNISVPEVAEKNGKK--VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
Query: 1097 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 1156
E LP V D++ +++ +F D VI GK I + EL E+
Sbjct: 473 GIPEFRLPKKIV------DVEIENLKKLGVKFETD----VIVGKTITIE-ELEEEG---- 517
Query: 1157 DGTSIDFTKIYLATGSS-PRTIS-QADGVNKVF----YLRTVE--DANN--IAPHITPES 1206
F I++A+G+ P ++ + N V YL V DA + I
Sbjct: 518 ------FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGAVPFQESLGKEVGERITKLFESK--GV 1262
V V+G M++A A ++ + VT+V R + +E+ R+ ++ +K G+
Sbjct: 572 KVAVVGGGNTAMDSAR-TAKRLGAERVTIVYRRS-------EEEMPARLEEVKHAKEEGI 623
Query: 1263 KFVMKANVSSFEKNEKNDVTAANLD--------------------NGTTIPADLVIVGIG 1302
+F+ N + +EK V L + T+ DLVIV +G
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
Query: 1303 TVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
N G+ELN + +VV+E +++++PG+YAGGDI
Sbjct: 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 62.9 bits (153), Expect = 6e-10
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------ 160
+ N + VI G + + +++ G I +ATG P G
Sbjct: 102 EKNKVDVIFGHARFTK----DGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAELGTDS 156
Query: 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 220
+ F L + P+ VV++G+ +I +E A +V R +
Sbjct: 157 DGFFALEEL-----------PKR-VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR- 203
Query: 221 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIG 279
S + E IT+ +E +G+ + EK + + + ++G +I D +I IG
Sbjct: 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVI-HFEDGKSIDDVDELIWAIG 262
Query: 280 TVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
NT L+ G++LN + ++V+EY TNVPG+YA GD+
Sbjct: 263 RKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304
Score = 62.9 bits (153), Expect = 6e-10
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------ 712
+ N + VI G + + +++ G I +ATG P G
Sbjct: 102 EKNKVDVIFGHARFTK----DGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAELGTDS 156
Query: 713 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772
+ F L + P+ VV++G+ +I +E A +V R +
Sbjct: 157 DGFFALEEL-----------PKR-VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR- 203
Query: 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIG 831
S + E IT+ +E +G+ + EK + + + ++G +I D +I IG
Sbjct: 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVI-HFEDGKSIDDVDELIWAIG 262
Query: 832 TVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
NT L+ G++LN + ++V+EY TNVPG+YA GD+
Sbjct: 263 RKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304
Score = 62.9 bits (153), Expect = 6e-10
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------ 1183
+ N + VI G + + +++ G I +ATG P G
Sbjct: 102 EKNKVDVIFGHARFTK----DGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAELGTDS 156
Query: 1184 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 1243
+ F L + P+ VV++G+ +I +E A +V R +
Sbjct: 157 DGFFALEEL-----------PKR-VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR- 203
Query: 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIG 1302
S + E IT+ +E +G+ + EK + + + ++G +I D +I IG
Sbjct: 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVI-HFEDGKSIDDVDELIWAIG 262
Query: 1303 TVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
NT L+ G++LN + ++V+EY TNVPG+YA GD+
Sbjct: 263 RKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 61.7 bits (151), Expect = 2e-09
Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 88/332 (26%)
Query: 36 AKLSSG----------NKDTF--IVVGGGPSGAT-CVETLRQNGFTGKLYFITD------ 76
AKL +G KD + +VVGGGP+GA + R+ TG + +
Sbjct: 192 AKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTG---IVAERFGGQV 248
Query: 77 ------ENF--LPY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSE 124
ENF +P + KL+ L EE K+ D+ ++ K+ +
Sbjct: 249 LDTMGIENFISVPETEGPKLAAAL-----------EEHVKEYDVDIMNLQRASKLEPAAG 297
Query: 125 LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-------NK-VFYLRTVEDANNIA 176
L E ++L +G + + LATG+ R + V NK V Y
Sbjct: 298 LIE--VELANGAVLKAKTVILATGARWRNM----NVPGEDEYRNKGVAY----------C 341
Query: 177 PH----ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERIT 231
PH + V VIG G+EAA A VK VTV+ F L +V +
Sbjct: 342 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL-----EFAPELKADQVLQD-- 394
Query: 232 KLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT----TIPADLVIVGIGTVLNTNY 286
KL V + A + + VT D T + + V V IG V NT +
Sbjct: 395 KLRSLPNVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW 453
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
L G VELN + ++V+ T+VPGV+A GD
Sbjct: 454 LKGT-VELNRRGEIIVDARGATSVPGVFAAGD 484
Score = 61.7 bits (151), Expect = 2e-09
Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 88/332 (26%)
Query: 588 AKLSSG----------NKDTF--IVVGGGPSGAT-CVETLRQNGFTGKLYFITD------ 628
AKL +G KD + +VVGGGP+GA + R+ TG + +
Sbjct: 192 AKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTG---IVAERFGGQV 248
Query: 629 ------ENF--LPY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSE 676
ENF +P + KL+ L EE K+ D+ ++ K+ +
Sbjct: 249 LDTMGIENFISVPETEGPKLAAAL-----------EEHVKEYDVDIMNLQRASKLEPAAG 297
Query: 677 LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-------NK-VFYLRTVEDANNIA 728
L E ++L +G + + LATG+ R + V NK V Y
Sbjct: 298 LIE--VELANGAVLKAKTVILATGARWRNM----NVPGEDEYRNKGVAY----------C 341
Query: 729 PH----ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERIT 783
PH + V VIG G+EAA A VK VTV+ F L +V +
Sbjct: 342 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL-----EFAPELKADQVLQD-- 394
Query: 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT----TIPADLVIVGIGTVLNTNY 838
KL V + A + + VT D T + + V V IG V NT +
Sbjct: 395 KLRSLPNVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW 453
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
L G VELN + ++V+ T+VPGV+A GD
Sbjct: 454 LKGT-VELNRRGEIIVDARGATSVPGVFAAGD 484
Score = 61.7 bits (151), Expect = 2e-09
Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 88/332 (26%)
Query: 1059 AKLSSG----------NKDTF--IVVGGGPSGAT-CVETLRQNGFTGKLYFITD------ 1099
AKL +G KD + +VVGGGP+GA + R+ TG + +
Sbjct: 192 AKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTG---IVAERFGGQV 248
Query: 1100 ------ENF--LPY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSE 1147
ENF +P + KL+ L EE K+ D+ ++ K+ +
Sbjct: 249 LDTMGIENFISVPETEGPKLAAAL-----------EEHVKEYDVDIMNLQRASKLEPAAG 297
Query: 1148 LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-------NK-VFYLRTVEDANNIA 1199
L E ++L +G + + LATG+ R + V NK V Y
Sbjct: 298 LIE--VELANGAVLKAKTVILATGARWRNM----NVPGEDEYRNKGVAY----------C 341
Query: 1200 PH----ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERIT 1254
PH + V VIG G+EAA A VK VTV+ F L +V +
Sbjct: 342 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL-----EFAPELKADQVLQD-- 394
Query: 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT----TIPADLVIVGIGTVLNTNY 1309
KL V + A + + VT D T + + V V IG V NT +
Sbjct: 395 KLRSLPNVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW 453
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
L G VELN + ++V+ T+VPGV+A GD
Sbjct: 454 LKGT-VELNRRGEIIVDARGATSVPGVFAAGD 484
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 60.3 bits (147), Expect = 4e-09
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 111 IHVIKGKKIISDSELNEKKIKLQDGT----SIDFTKIYLATGSSPRTISQA--DGVNKVF 164
+ VI G+ + D L ++K+ ++D + +ATG+SPR + A DG ++
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG-ERIL 165
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVG-RGAV-PFQES 221
R + D + + H+ +V+GS G E A+A+ VK VT+V R V P +++
Sbjct: 166 TWRQLYDLDELPEHL------IVVGSGVTGAEFASAYTELGVK-VTLVSSRDRVLPGEDA 218
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 281
EV E + F +G+ + ++ S E+ D L +G T+ ++ +G+V
Sbjct: 219 DAAEVLEEV---FARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSV 273
Query: 282 LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
NT L+ GVEL + V+ T+VPG+YA GD
Sbjct: 274 PNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGD 312
Score = 60.3 bits (147), Expect = 4e-09
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 663 IHVIKGKKIISDSELNEKKIKLQDGT----SIDFTKIYLATGSSPRTISQA--DGVNKVF 716
+ VI G+ + D L ++K+ ++D + +ATG+SPR + A DG ++
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG-ERIL 165
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVG-RGAV-PFQES 773
R + D + + H+ +V+GS G E A+A+ VK VT+V R V P +++
Sbjct: 166 TWRQLYDLDELPEHL------IVVGSGVTGAEFASAYTELGVK-VTLVSSRDRVLPGEDA 218
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833
EV E + F +G+ + ++ S E+ D L +G T+ ++ +G+V
Sbjct: 219 DAAEVLEEV---FARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSV 273
Query: 834 LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
NT L+ GVEL + V+ T+VPG+YA GD
Sbjct: 274 PNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGD 312
Score = 60.3 bits (147), Expect = 4e-09
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 1134 IHVIKGKKIISDSELNEKKIKLQDGT----SIDFTKIYLATGSSPRTISQA--DGVNKVF 1187
+ VI G+ + D L ++K+ ++D + +ATG+SPR + A DG ++
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG-ERIL 165
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVG-RGAV-PFQES 1244
R + D + + H+ +V+GS G E A+A+ VK VT+V R V P +++
Sbjct: 166 TWRQLYDLDELPEHL------IVVGSGVTGAEFASAYTELGVK-VTLVSSRDRVLPGEDA 218
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304
EV E + F +G+ + ++ S E+ D L +G T+ ++ +G+V
Sbjct: 219 DAAEVLEEV---FARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSV 273
Query: 1305 LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
NT L+ GVEL + V+ T+VPG+YA GD
Sbjct: 274 PNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGD 312
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 58.6 bits (142), Expect = 2e-08
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 187 VIGSSFIGMEAAAFCASKVKSVTV--VGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
+IG IG+E A VTV +P +E V + E G+ F++
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE---PSVAALAKQYMEEDGITFLLN 218
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVV 302
A+ + KN+ + V T D ++ G NT L+ +EL + A+ V
Sbjct: 219 AHTTEV-KNDGDQVLVVT--EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275
Query: 303 NEYLETNVPGVYAGGDI------AYAPLHSF---YNKNASIGHYQLAQ 341
++Y +T+VPGV+A GD+ Y L F + G Y L
Sbjct: 276 DDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLED 323
Score = 58.6 bits (142), Expect = 2e-08
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 739 VIGSSFIGMEAAAFCASKVKSVTV--VGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
+IG IG+E A VTV +P +E V + E G+ F++
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE---PSVAALAKQYMEEDGITFLLN 218
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVV 854
A+ + KN+ + V T D ++ G NT L+ +EL + A+ V
Sbjct: 219 AHTTEV-KNDGDQVLVVT--EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275
Query: 855 NEYLETNVPGVYAGGDI------AYAPLHSF---YNKNASIGHYQLAQ 893
++Y +T+VPGV+A GD+ Y L F + G Y L
Sbjct: 276 DDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLED 323
Score = 58.6 bits (142), Expect = 2e-08
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTV--VGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
+IG IG+E A VTV +P +E V + E G+ F++
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE---PSVAALAKQYMEEDGITFLLN 218
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVV 1325
A+ + KN+ + V T D ++ G NT L+ +EL + A+ V
Sbjct: 219 AHTTEV-KNDGDQVLVVT--EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275
Query: 1326 NEYLETNVPGVYAGGDI------AYAPLHSF---YNKNASIGHYQLAQ 1364
++Y +T+VPGV+A GD+ Y L F + G Y L
Sbjct: 276 DDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLED 323
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 57.9 bits (140), Expect = 2e-08
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
VV+G +I +E A+ +V + R +P + E+ + + E +G+ +
Sbjct: 206 AVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPR 264
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 302
N++ K E D+G AD+V+ G NT L+ GVEL+ AV V
Sbjct: 265 TNLTQLTKTE--GGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKV 322
Query: 303 NEYLETNVPGVYAGGDI 319
+EY TN+P ++A GD+
Sbjct: 323 DEYSRTNIPSIWAIGDV 339
Score = 57.9 bits (140), Expect = 2e-08
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
VV+G +I +E A+ +V + R +P + E+ + + E +G+ +
Sbjct: 206 AVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPR 264
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 854
N++ K E D+G AD+V+ G NT L+ GVEL+ AV V
Sbjct: 265 TNLTQLTKTE--GGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKV 322
Query: 855 NEYLETNVPGVYAGGDI 871
+EY TN+P ++A GD+
Sbjct: 323 DEYSRTNIPSIWAIGDV 339
Score = 57.9 bits (140), Expect = 2e-08
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
VV+G +I +E A+ +V + R +P + E+ + + E +G+ +
Sbjct: 206 AVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPR 264
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 1325
N++ K E D+G AD+V+ G NT L+ GVEL+ AV V
Sbjct: 265 TNLTQLTKTE--GGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKV 322
Query: 1326 NEYLETNVPGVYAGGDI 1342
+EY TN+P ++A GD+
Sbjct: 323 DEYSRTNIPSIWAIGDV 339
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 58.0 bits (141), Expect = 3e-08
Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 94/383 (24%)
Query: 14 DDSVVVQARK----DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTG 69
DD+V + A + D K P +G + V+GGGP+G + LR+ G
Sbjct: 106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKR--VAVIGGGPAGLSAAYHLRRMGHAV 163
Query: 70 KLYFITDEN--------F------LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 115
++ + + LP + LD + IL D + V
Sbjct: 164 TIF---EAGPKLGGMMRYGIPAYRLPREV------LDAEIQRIL--------DLGVEVRL 206
Query: 116 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI----SQADGV-NKVFYLRTV 169
G ++ D L + +G +F +++A G + + A GV + V +LR V
Sbjct: 207 GVRVGEDITLEQ-----LEG---EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV 258
Query: 170 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEV 226
+ P + VVVIG M+AA ++ + VT+V R + +E+
Sbjct: 259 GEGE--PPFLG--KRVVVIGGGNTAMDAAR--TARRLGAEEVTIVYRRTREDMPAHDEEI 312
Query: 227 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------DNGT---------TI 269
E +GV+ E +E + ++G T+
Sbjct: 313 EEA-----LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL 367
Query: 270 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 328
ADLV++ IG +++ L+ G+ V V+ ++ T PGV+AGGD+ P +
Sbjct: 368 EADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-RTV- 425
Query: 329 NKNASIGHYQLAQYHGRIAALNM 351
+IG HG+ AA N+
Sbjct: 426 --TTAIG-------HGKKAARNI 439
Score = 58.0 bits (141), Expect = 3e-08
Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 94/383 (24%)
Query: 566 DDSVVVQARK----DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTG 621
DD+V + A + D K P +G + V+GGGP+G + LR+ G
Sbjct: 106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKR--VAVIGGGPAGLSAAYHLRRMGHAV 163
Query: 622 KLYFITDEN--------F------LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 667
++ + + LP + LD + IL D + V
Sbjct: 164 TIF---EAGPKLGGMMRYGIPAYRLPREV------LDAEIQRIL--------DLGVEVRL 206
Query: 668 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI----SQADGV-NKVFYLRTV 721
G ++ D L + +G +F +++A G + + A GV + V +LR V
Sbjct: 207 GVRVGEDITLEQ-----LEG---EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV 258
Query: 722 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEV 778
+ P + VVVIG M+AA ++ + VT+V R + +E+
Sbjct: 259 GEGE--PPFLG--KRVVVIGGGNTAMDAAR--TARRLGAEEVTIVYRRTREDMPAHDEEI 312
Query: 779 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------DNGT---------TI 821
E +GV+ E +E + ++G T+
Sbjct: 313 EEA-----LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL 367
Query: 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 880
ADLV++ IG +++ L+ G+ V V+ ++ T PGV+AGGD+ P +
Sbjct: 368 EADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-RTV- 425
Query: 881 NKNASIGHYQLAQYHGRIAALNM 903
+IG HG+ AA N+
Sbjct: 426 --TTAIG-------HGKKAARNI 439
Score = 58.0 bits (141), Expect = 3e-08
Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 94/383 (24%)
Query: 1037 DDSVVVQARK----DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTG 1092
DD+V + A + D K P +G + V+GGGP+G + LR+ G
Sbjct: 106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKR--VAVIGGGPAGLSAAYHLRRMGHAV 163
Query: 1093 KLYFITDEN--------F------LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 1138
++ + + LP + LD + IL D + V
Sbjct: 164 TIF---EAGPKLGGMMRYGIPAYRLPREV------LDAEIQRIL--------DLGVEVRL 206
Query: 1139 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI----SQADGV-NKVFYLRTV 1192
G ++ D L + +G +F +++A G + + A GV + V +LR V
Sbjct: 207 GVRVGEDITLEQ-----LEG---EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV 258
Query: 1193 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEV 1249
+ P + VVVIG M+AA ++ + VT+V R + +E+
Sbjct: 259 GEGE--PPFLG--KRVVVIGGGNTAMDAAR--TARRLGAEEVTIVYRRTREDMPAHDEEI 312
Query: 1250 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------DNGT---------TI 1292
E +GV+ E +E + ++G T+
Sbjct: 313 EEA-----LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL 367
Query: 1293 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 1351
ADLV++ IG +++ L+ G+ V V+ ++ T PGV+AGGD+ P +
Sbjct: 368 EADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-RTV- 425
Query: 1352 NKNASIGHYQLAQYHGRIAALNM 1374
+IG HG+ AA N+
Sbjct: 426 --TTAIG-------HGKKAARNI 439
>gnl|CDD|170182 PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin
subunit; Provisional.
Length = 106
Score = 52.1 bits (125), Expect = 5e-08
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 962 LTVGMDPLAAQF-AERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIE 1019
L V P+ A F YA+ +CSH A L +G L D V CP H A F + TG
Sbjct: 18 LRVDTSPVIALFNVGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKAL 77
Query: 1020 DFPGMDSLPCYKVTIQNDDSVV 1041
P D L Y V ++ D +
Sbjct: 78 CLPATDPLRTYPVHVEGGDIFI 99
Score = 49.8 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 508 YAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
YA+ +CSH A L +G L D V CP H A F + TG P D L Y V ++
Sbjct: 36 YAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHVEGG 95
Query: 567 DSVV 570
D +
Sbjct: 96 DIFI 99
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 57.0 bits (138), Expect = 5e-08
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 107 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA--DGVNKV 163
K N I VI+GK +D + + ++ +D + +A GS P + A DG
Sbjct: 101 KKNKIKVIQGKASFETDHRVRVEYGDKEE--VVDAEQFIIAAGSEPTELPFAPFDGK--- 155
Query: 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 223
++ + A ++ P I P S ++++G IG E A+ + VT+V L
Sbjct: 156 -WIINSKHAMSL-PSI-PSS-LLIVGGGVIGCEFASIYSRLGTKVTIVEMA-----PQLL 206
Query: 224 KEVGERITKLF----ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
E I + E+ GVK A + + K + + A+ V+V +G
Sbjct: 207 PGEDEDIAHILREKLENDGVKIFTGAALKGLN-SYKKQALFEYEGSIQEVNAEFVLVSVG 265
Query: 280 ---TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 336
V N L+ GV+ K + VNE+++TNVP +YA GD+ IG
Sbjct: 266 RKPRVQQLN-LEKAGVQF-SNKGISVNEHMQTNVPHIYACGDV--------------IGG 309
Query: 337 YQLAQ--YH-GRIAAL 349
QLA +H G AAL
Sbjct: 310 IQLAHVAFHEGTTAAL 325
Score = 57.0 bits (138), Expect = 5e-08
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 659 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA--DGVNKV 715
K N I VI+GK +D + + ++ +D + +A GS P + A DG
Sbjct: 101 KKNKIKVIQGKASFETDHRVRVEYGDKEE--VVDAEQFIIAAGSEPTELPFAPFDGK--- 155
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 775
++ + A ++ P I P S ++++G IG E A+ + VT+V L
Sbjct: 156 -WIINSKHAMSL-PSI-PSS-LLIVGGGVIGCEFASIYSRLGTKVTIVEMA-----PQLL 206
Query: 776 KEVGERITKLF----ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
E I + E+ GVK A + + K + + A+ V+V +G
Sbjct: 207 PGEDEDIAHILREKLENDGVKIFTGAALKGLN-SYKKQALFEYEGSIQEVNAEFVLVSVG 265
Query: 832 ---TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 888
V N L+ GV+ K + VNE+++TNVP +YA GD+ IG
Sbjct: 266 RKPRVQQLN-LEKAGVQF-SNKGISVNEHMQTNVPHIYACGDV--------------IGG 309
Query: 889 YQLAQ--YH-GRIAAL 901
QLA +H G AAL
Sbjct: 310 IQLAHVAFHEGTTAAL 325
Score = 57.0 bits (138), Expect = 5e-08
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 1130 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA--DGVNKV 1186
K N I VI+GK +D + + ++ +D + +A GS P + A DG
Sbjct: 101 KKNKIKVIQGKASFETDHRVRVEYGDKEE--VVDAEQFIIAAGSEPTELPFAPFDGK--- 155
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 1246
++ + A ++ P I P S ++++G IG E A+ + VT+V L
Sbjct: 156 -WIINSKHAMSL-PSI-PSS-LLIVGGGVIGCEFASIYSRLGTKVTIVEMA-----PQLL 206
Query: 1247 KEVGERITKLF----ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
E I + E+ GVK A + + K + + A+ V+V +G
Sbjct: 207 PGEDEDIAHILREKLENDGVKIFTGAALKGLN-SYKKQALFEYEGSIQEVNAEFVLVSVG 265
Query: 1303 ---TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359
V N L+ GV+ K + VNE+++TNVP +YA GD+ IG
Sbjct: 266 RKPRVQQLN-LEKAGVQF-SNKGISVNEHMQTNVPHIYACGDV--------------IGG 309
Query: 1360 YQLAQ--YH-GRIAAL 1372
QLA +H G AAL
Sbjct: 310 IQLAHVAFHEGTTAAL 325
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 54.9 bits (133), Expect = 1e-07
Identities = 73/301 (24%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 47 IVVGGGPSGATC-VETLRQN-------GFT--GKLYFITD-ENFLPYDRVKLSKQL--DI 93
I++G GP+G T + R N G G+L T+ EN+ + +L +
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFPEGISGPELMEKM 62
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 152
K ++ E Y++ +I + K+ DG + +ATG+S R
Sbjct: 63 KEQAVKFGAEIIYEE----------VIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASAR 112
Query: 153 TISQADGV--NKVFYLRTVE-----DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 205
+ G+ F+ R V D V V+G +E A +
Sbjct: 113 KL----GIPGEDEFWGRGVSYCATCDG-----PFFKNKEVAVVGGGDSAIEEALYLTRIA 163
Query: 206 KSVTVVGRG----AVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 260
K VT+V R A + L K +I L+ S + V V V
Sbjct: 164 KKVTLVHRRDKFRAEKILLDRLKKN--PKIEFLWNSTVKEIVGDNKVEG--------VKI 213
Query: 261 ANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
N G + D V + IG NT L G +EL+ +V +E + T+VPGV+A GD
Sbjct: 214 KNTVTGEEEELEVDGVFIAIGHEPNTELLKGL-LELDENGYIVTDEGMRTSVPGVFAAGD 272
Query: 319 I 319
+
Sbjct: 273 V 273
Score = 54.9 bits (133), Expect = 1e-07
Identities = 73/301 (24%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 599 IVVGGGPSGATC-VETLRQN-------GFT--GKLYFITD-ENFLPYDRVKLSKQL--DI 645
I++G GP+G T + R N G G+L T+ EN+ + +L +
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFPEGISGPELMEKM 62
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 704
K ++ E Y++ +I + K+ DG + +ATG+S R
Sbjct: 63 KEQAVKFGAEIIYEE----------VIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASAR 112
Query: 705 TISQADGV--NKVFYLRTVE-----DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 757
+ G+ F+ R V D V V+G +E A +
Sbjct: 113 KL----GIPGEDEFWGRGVSYCATCDG-----PFFKNKEVAVVGGGDSAIEEALYLTRIA 163
Query: 758 KSVTVVGRG----AVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812
K VT+V R A + L K +I L+ S + V V V
Sbjct: 164 KKVTLVHRRDKFRAEKILLDRLKKN--PKIEFLWNSTVKEIVGDNKVEG--------VKI 213
Query: 813 ANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
N G + D V + IG NT L G +EL+ +V +E + T+VPGV+A GD
Sbjct: 214 KNTVTGEEEELEVDGVFIAIGHEPNTELLKGL-LELDENGYIVTDEGMRTSVPGVFAAGD 272
Query: 871 I 871
+
Sbjct: 273 V 273
Score = 54.9 bits (133), Expect = 1e-07
Identities = 73/301 (24%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 1070 IVVGGGPSGATC-VETLRQN-------GFT--GKLYFITD-ENFLPYDRVKLSKQL--DI 1116
I++G GP+G T + R N G G+L T+ EN+ + +L +
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFPEGISGPELMEKM 62
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 1175
K ++ E Y++ +I + K+ DG + +ATG+S R
Sbjct: 63 KEQAVKFGAEIIYEE----------VIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASAR 112
Query: 1176 TISQADGV--NKVFYLRTVE-----DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 1228
+ G+ F+ R V D V V+G +E A +
Sbjct: 113 KL----GIPGEDEFWGRGVSYCATCDG-----PFFKNKEVAVVGGGDSAIEEALYLTRIA 163
Query: 1229 KSVTVVGRG----AVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283
K VT+V R A + L K +I L+ S + V V V
Sbjct: 164 KKVTLVHRRDKFRAEKILLDRLKKN--PKIEFLWNSTVKEIVGDNKVEG--------VKI 213
Query: 1284 ANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
N G + D V + IG NT L G +EL+ +V +E + T+VPGV+A GD
Sbjct: 214 KNTVTGEEEELEVDGVFIAIGHEPNTELLKGL-LELDENGYIVTDEGMRTSVPGVFAAGD 272
Query: 1342 I 1342
+
Sbjct: 273 V 273
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 55.6 bits (134), Expect = 1e-07
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 77/318 (24%)
Query: 48 VVGGGPSGATCVETLRQNGFT-----------GKLYFITDENFLPYD----RVKLSKQLD 92
V+G GP+G C L + G + G + + E LP + +K K+L
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SP 151
+ F + ++ GK + EL + + +++ TG+ P
Sbjct: 198 VT----------FRMN---FLV-GKTATLE-ELFSQ-----------YDAVFIGTGAGLP 231
Query: 152 RTIS----QADGV---NKVFYLRTVEDANNIAPHITP---ESNVVVIGSSFIGMEAAAFC 201
+ ++ + GV N + A TP +VVVIG +++A
Sbjct: 232 KLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTA 291
Query: 202 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 261
V + R +E + V E E +GVKF +E+ +V A
Sbjct: 292 LRLGAEVHCLYRRT---REDMTARVEE--IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346
Query: 262 NL--------------------DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 301
D + AD VIV IG N + ++ + + +V
Sbjct: 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIV 406
Query: 302 VNEYLETNVPGVYAGGDI 319
V+E T++PGV+AGGDI
Sbjct: 407 VDEDQRTSIPGVFAGGDI 424
Score = 55.6 bits (134), Expect = 1e-07
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 77/318 (24%)
Query: 600 VVGGGPSGATCVETLRQNGFT-----------GKLYFITDENFLPYD----RVKLSKQLD 644
V+G GP+G C L + G + G + + E LP + +K K+L
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SP 703
+ F + ++ GK + EL + + +++ TG+ P
Sbjct: 198 VT----------FRMN---FLV-GKTATLE-ELFSQ-----------YDAVFIGTGAGLP 231
Query: 704 RTIS----QADGV---NKVFYLRTVEDANNIAPHITP---ESNVVVIGSSFIGMEAAAFC 753
+ ++ + GV N + A TP +VVVIG +++A
Sbjct: 232 KLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTA 291
Query: 754 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813
V + R +E + V E E +GVKF +E+ +V A
Sbjct: 292 LRLGAEVHCLYRRT---REDMTARVEE--IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346
Query: 814 NL--------------------DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853
D + AD VIV IG N + ++ + + +V
Sbjct: 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIV 406
Query: 854 VNEYLETNVPGVYAGGDI 871
V+E T++PGV+AGGDI
Sbjct: 407 VDEDQRTSIPGVFAGGDI 424
Score = 55.6 bits (134), Expect = 1e-07
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 77/318 (24%)
Query: 1071 VVGGGPSGATCVETLRQNGFT-----------GKLYFITDENFLPYD----RVKLSKQLD 1115
V+G GP+G C L + G + G + + E LP + +K K+L
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SP 1174
+ F + ++ GK + EL + + +++ TG+ P
Sbjct: 198 VT----------FRMN---FLV-GKTATLE-ELFSQ-----------YDAVFIGTGAGLP 231
Query: 1175 RTIS----QADGV---NKVFYLRTVEDANNIAPHITP---ESNVVVIGSSFIGMEAAAFC 1224
+ ++ + GV N + A TP +VVVIG +++A
Sbjct: 232 KLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTA 291
Query: 1225 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284
V + R +E + V E E +GVKF +E+ +V A
Sbjct: 292 LRLGAEVHCLYRRT---REDMTARVEE--IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346
Query: 1285 NL--------------------DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324
D + AD VIV IG N + ++ + + +V
Sbjct: 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIV 406
Query: 1325 VNEYLETNVPGVYAGGDI 1342
V+E T++PGV+AGGDI
Sbjct: 407 VDEDQRTSIPGVFAGGDI 424
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 55.4 bits (134), Expect = 2e-07
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 66/309 (21%)
Query: 47 IVVGGGPSG-ATCVETLRQNGFTGKLYFITD------------ENFL--PYDR-VKLSKQ 90
+VVGGGP+G A + R+ T + + EN + PY +L+
Sbjct: 216 LVVGGGPAGAAAAIYAARKGLRTA---MVAERIGGQVKDTVGIENLISVPYTTGSQLAAN 272
Query: 91 LDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSELNEKKIKLQDGTSIDFTKIYLAT 147
L EE K I +++ KKI ++ L + L+ G + + +AT
Sbjct: 273 L-----------EEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVAT 319
Query: 148 GSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH----ITPESNVVVIGSSFIGMEAAA 199
G+ R + + + + K V Y PH +V VIG G+EAA
Sbjct: 320 GARWRKLGVPGEKEYIGKGVAY----------CPHCDGPFFKGKDVAVIGGGNSGIEAAI 369
Query: 200 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 259
A V+ VTV+ F + L K KL V + A + + + VT
Sbjct: 370 DLAGIVRHVTVL-----EFADEL-KADKVLQDKLKSLPNVDILTSAQTTEI-VGDGDKVT 422
Query: 260 AANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 314
+ + + D V V IG V NT +L VELN + +V++E T+VPG++
Sbjct: 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIF 481
Query: 315 AGGDIAYAP 323
A GD+ P
Sbjct: 482 AAGDVTTVP 490
Score = 55.4 bits (134), Expect = 2e-07
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 66/309 (21%)
Query: 599 IVVGGGPSG-ATCVETLRQNGFTGKLYFITD------------ENFL--PYDR-VKLSKQ 642
+VVGGGP+G A + R+ T + + EN + PY +L+
Sbjct: 216 LVVGGGPAGAAAAIYAARKGLRTA---MVAERIGGQVKDTVGIENLISVPYTTGSQLAAN 272
Query: 643 LDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSELNEKKIKLQDGTSIDFTKIYLAT 699
L EE K I +++ KKI ++ L + L+ G + + +AT
Sbjct: 273 L-----------EEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVAT 319
Query: 700 GSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH----ITPESNVVVIGSSFIGMEAAA 751
G+ R + + + + K V Y PH +V VIG G+EAA
Sbjct: 320 GARWRKLGVPGEKEYIGKGVAY----------CPHCDGPFFKGKDVAVIGGGNSGIEAAI 369
Query: 752 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 811
A V+ VTV+ F + L K KL V + A + + + VT
Sbjct: 370 DLAGIVRHVTVL-----EFADEL-KADKVLQDKLKSLPNVDILTSAQTTEI-VGDGDKVT 422
Query: 812 AANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 866
+ + + D V V IG V NT +L VELN + +V++E T+VPG++
Sbjct: 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIF 481
Query: 867 AGGDIAYAP 875
A GD+ P
Sbjct: 482 AAGDVTTVP 490
Score = 55.4 bits (134), Expect = 2e-07
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 66/309 (21%)
Query: 1070 IVVGGGPSG-ATCVETLRQNGFTGKLYFITD------------ENFL--PYDR-VKLSKQ 1113
+VVGGGP+G A + R+ T + + EN + PY +L+
Sbjct: 216 LVVGGGPAGAAAAIYAARKGLRTA---MVAERIGGQVKDTVGIENLISVPYTTGSQLAAN 272
Query: 1114 LDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSELNEKKIKLQDGTSIDFTKIYLAT 1170
L EE K I +++ KKI ++ L + L+ G + + +AT
Sbjct: 273 L-----------EEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVAT 319
Query: 1171 GSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH----ITPESNVVVIGSSFIGMEAAA 1222
G+ R + + + + K V Y PH +V VIG G+EAA
Sbjct: 320 GARWRKLGVPGEKEYIGKGVAY----------CPHCDGPFFKGKDVAVIGGGNSGIEAAI 369
Query: 1223 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 1282
A V+ VTV+ F + L K KL V + A + + + VT
Sbjct: 370 DLAGIVRHVTVL-----EFADEL-KADKVLQDKLKSLPNVDILTSAQTTEI-VGDGDKVT 422
Query: 1283 AANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 1337
+ + + D V V IG V NT +L VELN + +V++E T+VPG++
Sbjct: 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIF 481
Query: 1338 AGGDIAYAP 1346
A GD+ P
Sbjct: 482 AAGDVTTVP 490
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 55.4 bits (133), Expect = 2e-07
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 56/298 (18%)
Query: 54 SGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLDIKADSILLRTEEFYKDN--- 109
+ A+ + L + G F T +F LP L + D + R + Y+ N
Sbjct: 99 NAASIHDILENSRHYG---FDTQFSFNLPL--------LVERRDKYIRRLNDIYRQNLKK 147
Query: 110 -DIHVIKGK-KIISDSELNEKKIK-----------------------LQDGTSIDFTKIY 144
++ +GK ++S++++ KK+ L DG I+ I
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207
Query: 145 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 204
+A G+ P G +++ + + + GS +I +E
Sbjct: 208 IAVGNKPIF-PDVKGKEFTI------SSDDFFKIKEAKR-IGIAGSGYIAVELINVVNRL 259
Query: 205 VKSVTVVGRGAV---PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 261
+ RG F E++ E+ + K + + ANV EK ++ ++T
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKK----NNINIITHANVEEIEKVKEKNLTIY 315
Query: 262 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA-VVVNEYLETNVPGVYAGGD 318
D D VI +G NT L+ K + + K + V++ T+V +YA GD
Sbjct: 316 LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGD 373
Score = 55.4 bits (133), Expect = 2e-07
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 56/298 (18%)
Query: 606 SGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLDIKADSILLRTEEFYKDN--- 661
+ A+ + L + G F T +F LP L + D + R + Y+ N
Sbjct: 99 NAASIHDILENSRHYG---FDTQFSFNLPL--------LVERRDKYIRRLNDIYRQNLKK 147
Query: 662 -DIHVIKGK-KIISDSELNEKKIK-----------------------LQDGTSIDFTKIY 696
++ +GK ++S++++ KK+ L DG I+ I
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207
Query: 697 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 756
+A G+ P G +++ + + + GS +I +E
Sbjct: 208 IAVGNKPIF-PDVKGKEFTI------SSDDFFKIKEAKR-IGIAGSGYIAVELINVVNRL 259
Query: 757 VKSVTVVGRGAV---PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813
+ RG F E++ E+ + K + + ANV EK ++ ++T
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKK----NNINIITHANVEEIEKVKEKNLTIY 315
Query: 814 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA-VVVNEYLETNVPGVYAGGD 870
D D VI +G NT L+ K + + K + V++ T+V +YA GD
Sbjct: 316 LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGD 373
Score = 55.4 bits (133), Expect = 2e-07
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 56/298 (18%)
Query: 1077 SGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLDIKADSILLRTEEFYKDN--- 1132
+ A+ + L + G F T +F LP L + D + R + Y+ N
Sbjct: 99 NAASIHDILENSRHYG---FDTQFSFNLPL--------LVERRDKYIRRLNDIYRQNLKK 147
Query: 1133 -DIHVIKGK-KIISDSELNEKKIK-----------------------LQDGTSIDFTKIY 1167
++ +GK ++S++++ KK+ L DG I+ I
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207
Query: 1168 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 1227
+A G+ P G +++ + + + GS +I +E
Sbjct: 208 IAVGNKPIF-PDVKGKEFTI------SSDDFFKIKEAKR-IGIAGSGYIAVELINVVNRL 259
Query: 1228 VKSVTVVGRGAV---PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284
+ RG F E++ E+ + K + + ANV EK ++ ++T
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKK----NNINIITHANVEEIEKVKEKNLTIY 315
Query: 1285 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA-VVVNEYLETNVPGVYAGGD 1341
D D VI +G NT L+ K + + K + V++ T+V +YA GD
Sbjct: 316 LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGD 373
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 87 LSKQLDIKADSI--LLRTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFT 141
L++ + K +S+ L + EF ++ N + IKG + + +K +DG T ++
Sbjct: 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV--GKVVVKAEDGSETQLEAK 138
Query: 142 KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 201
I +ATGS P + N+ R ++ ++ P+ +VVIG+ IG+E +
Sbjct: 139 DIVIATGSEPTPLPGVTIDNQ----RIIDSTGALSLPEVPKH-LVVIGAGVIGLELGSVW 193
Query: 202 ASKVKSVTVV-----------GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 250
VTVV A Q++L K+ G+KF + + V+
Sbjct: 194 RRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ------------GMKFKLGSKVTGA 241
Query: 251 EKNEKN---DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG----QKAVVVN 303
+ A T+ AD V+V IG Y G G+E G ++ ++ N
Sbjct: 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYTQGLGLETVGLETDKRGMLAN 298
Query: 304 EYLETNVPGVYAGGDIAYAPL 324
++ T+VPGV+ GD+ P+
Sbjct: 299 DHHRTSVPGVWVIGDVTSGPM 319
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 639 LSKQLDIKADSI--LLRTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFT 693
L++ + K +S+ L + EF ++ N + IKG + + +K +DG T ++
Sbjct: 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV--GKVVVKAEDGSETQLEAK 138
Query: 694 KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 753
I +ATGS P + N+ R ++ ++ P+ +VVIG+ IG+E +
Sbjct: 139 DIVIATGSEPTPLPGVTIDNQ----RIIDSTGALSLPEVPKH-LVVIGAGVIGLELGSVW 193
Query: 754 ASKVKSVTVV-----------GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 802
VTVV A Q++L K+ G+KF + + V+
Sbjct: 194 RRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ------------GMKFKLGSKVTGA 241
Query: 803 EKNEKN---DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG----QKAVVVN 855
+ A T+ AD V+V IG Y G G+E G ++ ++ N
Sbjct: 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYTQGLGLETVGLETDKRGMLAN 298
Query: 856 EYLETNVPGVYAGGDIAYAPL 876
++ T+VPGV+ GD+ P+
Sbjct: 299 DHHRTSVPGVWVIGDVTSGPM 319
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 1110 LSKQLDIKADSI--LLRTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFT 1164
L++ + K +S+ L + EF ++ N + IKG + + +K +DG T ++
Sbjct: 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV--GKVVVKAEDGSETQLEAK 138
Query: 1165 KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 1224
I +ATGS P + N+ R ++ ++ P+ +VVIG+ IG+E +
Sbjct: 139 DIVIATGSEPTPLPGVTIDNQ----RIIDSTGALSLPEVPKH-LVVIGAGVIGLELGSVW 193
Query: 1225 ASKVKSVTVV-----------GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 1273
VTVV A Q++L K+ G+KF + + V+
Sbjct: 194 RRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ------------GMKFKLGSKVTGA 241
Query: 1274 EKNEKN---DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG----QKAVVVN 1326
+ A T+ AD V+V IG Y G G+E G ++ ++ N
Sbjct: 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYTQGLGLETVGLETDKRGMLAN 298
Query: 1327 EYLETNVPGVYAGGDIAYAPL 1347
++ T+VPGV+ GD+ P+
Sbjct: 299 DHHRTSVPGVWVIGDVTSGPM 319
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 54.5 bits (131), Expect = 3e-07
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 186 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVM 243
+V+G+S++ +E A F A VTV+ R + F + +VGE + E GVKF
Sbjct: 184 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHM----EEHGVKFKR 239
Query: 244 KANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA- 299
+ E+ E K V + NG D V++ IG T L+ GV++N +
Sbjct: 240 QFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299
Query: 300 VVVNEYLETNVPGVYAGGDIA 320
+ +E +TNVP +YA GDI
Sbjct: 300 IPADEEEQTNVPYIYAVGDIL 320
Score = 54.5 bits (131), Expect = 3e-07
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 738 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVM 795
+V+G+S++ +E A F A VTV+ R + F + +VGE + E GVKF
Sbjct: 184 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHM----EEHGVKFKR 239
Query: 796 KANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA- 851
+ E+ E K V + NG D V++ IG T L+ GV++N +
Sbjct: 240 QFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299
Query: 852 VVVNEYLETNVPGVYAGGDIA 872
+ +E +TNVP +YA GDI
Sbjct: 300 IPADEEEQTNVPYIYAVGDIL 320
Score = 54.5 bits (131), Expect = 3e-07
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 1209 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVM 1266
+V+G+S++ +E A F A VTV+ R + F + +VGE + E GVKF
Sbjct: 184 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHM----EEHGVKFKR 239
Query: 1267 KANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA- 1322
+ E+ E K V + NG D V++ IG T L+ GV++N +
Sbjct: 240 QFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299
Query: 1323 VVVNEYLETNVPGVYAGGDIA 1343
+ +E +TNVP +YA GDI
Sbjct: 300 IPADEEEQTNVPYIYAVGDIL 320
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 54.4 bits (131), Expect = 3e-07
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI-----------TKL 233
V VIG F E A F VTV+ R + K + E++ T+L
Sbjct: 146 VFVIGGGFAAAEEAVFLTRYASKVTVIVREP---DFTCAKLIAEKVKNHPKIEVKFNTEL 202
Query: 234 FESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 291
E+ G + A F N ++T A D GT V V +G ++ G
Sbjct: 203 KEATGDDGLRYA---KFVNNVTGEITEYKAPKDAGTF----GVFVFVGYAPSSELFKGV- 254
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDI 319
VEL+ + + NE +ETNVPGVYA GD+
Sbjct: 255 VELDKRGYIPTNEDMETNVPGVYAAGDL 282
Score = 54.4 bits (131), Expect = 3e-07
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI-----------TKL 785
V VIG F E A F VTV+ R + K + E++ T+L
Sbjct: 146 VFVIGGGFAAAEEAVFLTRYASKVTVIVREP---DFTCAKLIAEKVKNHPKIEVKFNTEL 202
Query: 786 FESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843
E+ G + A F N ++T A D GT V V +G ++ G
Sbjct: 203 KEATGDDGLRYA---KFVNNVTGEITEYKAPKDAGTF----GVFVFVGYAPSSELFKGV- 254
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDI 871
VEL+ + + NE +ETNVPGVYA GD+
Sbjct: 255 VELDKRGYIPTNEDMETNVPGVYAAGDL 282
Score = 54.4 bits (131), Expect = 3e-07
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI-----------TKL 1256
V VIG F E A F VTV+ R + K + E++ T+L
Sbjct: 146 VFVIGGGFAAAEEAVFLTRYASKVTVIVREP---DFTCAKLIAEKVKNHPKIEVKFNTEL 202
Query: 1257 FESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 1314
E+ G + A F N ++T A D GT V V +G ++ G
Sbjct: 203 KEATGDDGLRYA---KFVNNVTGEITEYKAPKDAGTF----GVFVFVGYAPSSELFKGV- 254
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDI 1342
VEL+ + + NE +ETNVPGVYA GD+
Sbjct: 255 VELDKRGYIPTNEDMETNVPGVYAAGDL 282
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 53.1 bits (127), Expect = 8e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 187 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
++G +IG+E A+ A+ VT++ A F +++ + I + +GV ++ A+
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL-EAASLFLPREDRDIADNIATILRDQGVDIILNAH 221
Query: 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL 306
V +E N V + + A L+ G + + + G+ +N + A+VV++YL
Sbjct: 222 VERISHHE-NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 307 ETNVPGVYAGGDI 319
T ++A GD+
Sbjct: 281 HTTADNIWAMGDV 293
Score = 53.1 bits (127), Expect = 8e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
++G +IG+E A+ A+ VT++ A F +++ + I + +GV ++ A+
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL-EAASLFLPREDRDIADNIATILRDQGVDIILNAH 221
Query: 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL 858
V +E N V + + A L+ G + + + G+ +N + A+VV++YL
Sbjct: 222 VERISHHE-NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 859 ETNVPGVYAGGDI 871
T ++A GD+
Sbjct: 281 HTTADNIWAMGDV 293
Score = 53.1 bits (127), Expect = 8e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
++G +IG+E A+ A+ VT++ A F +++ + I + +GV ++ A+
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL-EAASLFLPREDRDIADNIATILRDQGVDIILNAH 221
Query: 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL 1329
V +E N V + + A L+ G + + + G+ +N + A+VV++YL
Sbjct: 222 VERISHHE-NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 1330 ETNVPGVYAGGDI 1342
T ++A GD+
Sbjct: 281 HTTADNIWAMGDV 293
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 124 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVF-------YLRTVEDANNI 175
+ + +K+ L + + + + L GS+ +S +G +L E
Sbjct: 80 DPDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGAADLAVPVKPIENFLARWEALLES 138
Query: 176 APHITPESNVVVIGSSFIGMEAA-----AFCASKVKSVTVVGRGAVPFQESLGKEVGERI 230
A + V+G G+E A ++ + GA K V +
Sbjct: 139 ADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAK-VRRLV 197
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 290
+L +G++ A V+ A L +G T+PAD ++ G +L
Sbjct: 198 LRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGAR-APPWLAES 250
Query: 291 GVELNGQKAVVVNEYLET-NVPGVYAGGDIAY 321
G+ L+ + V+ L++ + P V+A GD A
Sbjct: 251 GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 676 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVF-------YLRTVEDANNI 727
+ + +K+ L + + + + L GS+ +S +G +L E
Sbjct: 80 DPDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGAADLAVPVKPIENFLARWEALLES 138
Query: 728 APHITPESNVVVIGSSFIGMEAA-----AFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782
A + V+G G+E A ++ + GA K V +
Sbjct: 139 ADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAK-VRRLV 197
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842
+L +G++ A V+ A L +G T+PAD ++ G +L
Sbjct: 198 LRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGAR-APPWLAES 250
Query: 843 GVELNGQKAVVVNEYLET-NVPGVYAGGDIAY 873
G+ L+ + V+ L++ + P V+A GD A
Sbjct: 251 GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 1147 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVF-------YLRTVEDANNI 1198
+ + +K+ L + + + + L GS+ +S +G +L E
Sbjct: 80 DPDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGAADLAVPVKPIENFLARWEALLES 138
Query: 1199 APHITPESNVVVIGSSFIGMEAA-----AFCASKVKSVTVVGRGAVPFQESLGKEVGERI 1253
A + V+G G+E A ++ + GA K V +
Sbjct: 139 ADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAK-VRRLV 197
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313
+L +G++ A V+ A L +G T+PAD ++ G +L
Sbjct: 198 LRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGAR-APPWLAES 250
Query: 1314 GVELNGQKAVVVNEYLET-NVPGVYAGGDIAY 1344
G+ L+ + V+ L++ + P V+A GD A
Sbjct: 251 GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
Score = 31.1 bits (71), Expect = 4.9
Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 54/179 (30%)
Query: 21 ARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVET-------LRQNGFTGKLYF 73
AR + L A G K VVGGG +G VE L + G G++
Sbjct: 130 ARWEALLES------ADAPPGTK-RLAVVGGGAAG---VEIALALRRRLPKRGLRGQVTL 179
Query: 74 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE---KKI 130
I + LP ++ +L R +G ++ + + +
Sbjct: 180 IAGASLLP----GFPAKVRRLVLRLLAR-------------RGIEVHEGAPVTRGPDGAL 222
Query: 131 KLQDGTSIDFTKIYLATGSSPRTISQADG----------VNKVFYLRTVEDANNIAPHI 179
L DG ++ I ATG+ G V+ L+++ PH+
Sbjct: 223 ILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDP--TLQSLSH-----PHV 274
Score = 31.1 bits (71), Expect = 4.9
Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 54/179 (30%)
Query: 573 ARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVET-------LRQNGFTGKLYF 625
AR + L A G K VVGGG +G VE L + G G++
Sbjct: 130 ARWEALLES------ADAPPGTK-RLAVVGGGAAG---VEIALALRRRLPKRGLRGQVTL 179
Query: 626 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE---KKI 682
I + LP ++ +L R +G ++ + + +
Sbjct: 180 IAGASLLP----GFPAKVRRLVLRLLAR-------------RGIEVHEGAPVTRGPDGAL 222
Query: 683 KLQDGTSIDFTKIYLATGSSPRTISQADG----------VNKVFYLRTVEDANNIAPHI 731
L DG ++ I ATG+ G V+ L+++ PH+
Sbjct: 223 ILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDP--TLQSLSH-----PHV 274
Score = 31.1 bits (71), Expect = 4.9
Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 54/179 (30%)
Query: 1044 ARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVET-------LRQNGFTGKLYF 1096
AR + L A G K VVGGG +G VE L + G G++
Sbjct: 130 ARWEALLES------ADAPPGTK-RLAVVGGGAAG---VEIALALRRRLPKRGLRGQVTL 179
Query: 1097 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE---KKI 1153
I + LP ++ +L R +G ++ + + +
Sbjct: 180 IAGASLLP----GFPAKVRRLVLRLLAR-------------RGIEVHEGAPVTRGPDGAL 222
Query: 1154 KLQDGTSIDFTKIYLATGSSPRTISQADG----------VNKVFYLRTVEDANNIAPHI 1202
L DG ++ I ATG+ G V+ L+++ PH+
Sbjct: 223 ILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDP--TLQSLSH-----PHV 274
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 50.6 bits (122), Expect = 3e-06
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES---KG-V 239
VVV+G S ++AA K VT+V RG + + V + E+ +G +
Sbjct: 154 KVVVVGGSNSAVDAALELYRKGAEVTMVHRG-----DEVSSSVKYWVRPDIENRIKEGSI 208
Query: 240 KFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
K + V ++ VT D G TIP D V G + +L+ GVEL+
Sbjct: 209 KAYFNSRVKEITEDS---VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLGVELDED 264
Query: 298 KAVVV--NEYLETNVPGVYAGGDIAY 321
+ V E +ETNVPG+Y G IA
Sbjct: 265 TGIPVYNPETMETNVPGLYLAGVIAA 290
Score = 50.6 bits (122), Expect = 3e-06
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES---KG-V 791
VVV+G S ++AA K VT+V RG + + V + E+ +G +
Sbjct: 154 KVVVVGGSNSAVDAALELYRKGAEVTMVHRG-----DEVSSSVKYWVRPDIENRIKEGSI 208
Query: 792 KFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
K + V ++ VT D G TIP D V G + +L+ GVEL+
Sbjct: 209 KAYFNSRVKEITEDS---VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLGVELDED 264
Query: 850 KAVVV--NEYLETNVPGVYAGGDIAY 873
+ V E +ETNVPG+Y G IA
Sbjct: 265 TGIPVYNPETMETNVPGLYLAGVIAA 290
Score = 50.6 bits (122), Expect = 3e-06
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES---KG-V 1262
VVV+G S ++AA K VT+V RG + + V + E+ +G +
Sbjct: 154 KVVVVGGSNSAVDAALELYRKGAEVTMVHRG-----DEVSSSVKYWVRPDIENRIKEGSI 208
Query: 1263 KFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
K + V ++ VT D G TIP D V G + +L+ GVEL+
Sbjct: 209 KAYFNSRVKEITEDS---VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLGVELDED 264
Query: 1321 KAVVV--NEYLETNVPGVYAGGDIAY 1344
+ V E +ETNVPG+Y G IA
Sbjct: 265 TGIPVYNPETMETNVPGLYLAGVIAA 290
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 50.9 bits (123), Expect = 4e-06
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQ-----L 91
VVG GP+G + L + G ++ E DR+ KL K+ +
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVF----ER---ADRIGGLLRYGIPDFKLEKEVIDRRI 200
Query: 92 DI-KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 150
++ +A+ I RT ++ V GK I + EL ++ ++L TG+
Sbjct: 201 ELMEAEGIEFRT-------NVEV--GKDI-TAEELLA-----------EYDAVFLGTGAY 239
Query: 151 -PRTIS----QADGV-NKVFYL----RTVEDANNIAPHITPES-NVVVIGSSFIGMEAAA 199
PR + DGV + +L R V + P I+ + +VVVIG GM+
Sbjct: 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLG-DETEPFISAKGKHVVVIGGGDTGMDCVG 298
Query: 200 FCASK---VKSVTVVGRGAVP----------------FQESLGKEVG-ERI----TKLFE 235
+ KSVT +P + S E G ER TK FE
Sbjct: 299 --TAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356
Query: 236 S-----KGVKFV-MKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIG-TVLNTNY 286
GVK V + FE E G+ +PADLV++ +G T
Sbjct: 357 GENGKVTGVKVVRTELGEGDFEPVE-----------GSEFVLPADLVLLAMGFTGPEAGL 405
Query: 287 LDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 318
L GVEL+ + V + +T+ P V+A GD
Sbjct: 406 LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
Score = 50.9 bits (123), Expect = 4e-06
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQ-----L 643
VVG GP+G + L + G ++ E DR+ KL K+ +
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVF----ER---ADRIGGLLRYGIPDFKLEKEVIDRRI 200
Query: 644 DI-KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 702
++ +A+ I RT ++ V GK I + EL ++ ++L TG+
Sbjct: 201 ELMEAEGIEFRT-------NVEV--GKDI-TAEELLA-----------EYDAVFLGTGAY 239
Query: 703 -PRTIS----QADGV-NKVFYL----RTVEDANNIAPHITPES-NVVVIGSSFIGMEAAA 751
PR + DGV + +L R V + P I+ + +VVVIG GM+
Sbjct: 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLG-DETEPFISAKGKHVVVIGGGDTGMDCVG 298
Query: 752 FCASK---VKSVTVVGRGAVP----------------FQESLGKEVG-ERI----TKLFE 787
+ KSVT +P + S E G ER TK FE
Sbjct: 299 --TAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356
Query: 788 S-----KGVKFV-MKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIG-TVLNTNY 838
GVK V + FE E G+ +PADLV++ +G T
Sbjct: 357 GENGKVTGVKVVRTELGEGDFEPVE-----------GSEFVLPADLVLLAMGFTGPEAGL 405
Query: 839 LDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 870
L GVEL+ + V + +T+ P V+A GD
Sbjct: 406 LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
Score = 50.9 bits (123), Expect = 4e-06
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQ-----L 1114
VVG GP+G + L + G ++ E DR+ KL K+ +
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVF----ER---ADRIGGLLRYGIPDFKLEKEVIDRRI 200
Query: 1115 DI-KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 1173
++ +A+ I RT ++ V GK I + EL ++ ++L TG+
Sbjct: 201 ELMEAEGIEFRT-------NVEV--GKDI-TAEELLA-----------EYDAVFLGTGAY 239
Query: 1174 -PRTIS----QADGV-NKVFYL----RTVEDANNIAPHITPES-NVVVIGSSFIGMEAAA 1222
PR + DGV + +L R V + P I+ + +VVVIG GM+
Sbjct: 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLG-DETEPFISAKGKHVVVIGGGDTGMDCVG 298
Query: 1223 FCASK---VKSVTVVGRGAVP----------------FQESLGKEVG-ERI----TKLFE 1258
+ KSVT +P + S E G ER TK FE
Sbjct: 299 --TAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356
Query: 1259 S-----KGVKFV-MKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIG-TVLNTNY 1309
GVK V + FE E G+ +PADLV++ +G T
Sbjct: 357 GENGKVTGVKVVRTELGEGDFEPVE-----------GSEFVLPADLVLLAMGFTGPEAGL 405
Query: 1310 LDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 1341
L GVEL+ + V + +T+ P V+A GD
Sbjct: 406 LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 50.7 bits (122), Expect = 5e-06
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
K + V+ G + N ++ +DG T I+F +A GS P + +
Sbjct: 104 KGRKVTVVNGLGKFTGG--NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-----GAVPFQ 219
+ T DA + P+ ++V+G IG+E V VV A
Sbjct: 162 WDST--DALELKE--VPK-RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA--D 214
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA--DLVIVG 277
+ + K +RI K F +++ V++ E E P D V+V
Sbjct: 215 KDIVKVFTKRIKKQF-----NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVA 269
Query: 278 IGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
+G V N LD + GVE++ + + V++ TNVP ++A GDI P+
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
Score = 50.7 bits (122), Expect = 5e-06
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
K + V+ G + N ++ +DG T I+F +A GS P + +
Sbjct: 104 KGRKVTVVNGLGKFTGG--NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-----GAVPFQ 771
+ T DA + P+ ++V+G IG+E V VV A
Sbjct: 162 WDST--DALELKE--VPK-RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA--D 214
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA--DLVIVG 829
+ + K +RI K F +++ V++ E E P D V+V
Sbjct: 215 KDIVKVFTKRIKKQF-----NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVA 269
Query: 830 IGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
+G V N LD + GVE++ + + V++ TNVP ++A GDI P+
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
Score = 50.7 bits (122), Expect = 5e-06
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
K + V+ G + N ++ +DG T I+F +A GS P + +
Sbjct: 104 KGRKVTVVNGLGKFTGG--NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-----GAVPFQ 1242
+ T DA + P+ ++V+G IG+E V VV A
Sbjct: 162 WDST--DALELKE--VPK-RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA--D 214
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA--DLVIVG 1300
+ + K +RI K F +++ V++ E E P D V+V
Sbjct: 215 KDIVKVFTKRIKKQF-----NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVA 269
Query: 1301 IGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
+G V N LD + GVE++ + + V++ TNVP ++A GDI P+
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase
(RO) family, Vanillate-O-demethylase oxygenase (VanA)
and dicamba O-demethylase oxygenase (DdmC) subfamily,
N-terminal Rieske domain of the oxygenase alpha subunit;
ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. Vanillate-O-demethylase is a heterodimeric
enzyme consisting of a terminal oxygenase (VanA) and
reductase (VanB) components. This enzyme reductively
catalyzes the conversion of vanillate into
protocatechuate and formaldehyde. Protocatechuate and
vanillate are important intermediate metabolites in the
degradation pathway of lignin-derived compounds such as
ferulic acid and vanillin by soil microbes. DDmC is the
oxygenase component of a three-component dicamba
O-demethylase found in Pseudomonas maltophila, that
catalyzes the conversion of a widely used herbicide
called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic
acid) to DCSA (3,6-dichlorosalicylic acid).
Length = 116
Score = 45.8 bits (109), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 509 AVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN 541
A+ +C H APL KGS+ G + C +HG F+
Sbjct: 41 ALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD 73
Score = 45.8 bits (109), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 980 AVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN 1012
A+ +C H APL KGS+ G + C +HG F+
Sbjct: 41 ALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD 73
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 49.2 bits (118), Expect = 1e-05
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 81/341 (23%)
Query: 29 KKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYFITDE 77
++ + +++ V+G GP+G TC L + G+ G L + E
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE 185
Query: 78 NFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 136
LP + V + K+++ IK + + T +V+ GK + D L E+
Sbjct: 186 FRLPKETV-VKKEIENIKKLGVKIET---------NVVVGKTVTIDELLEEEG------- 228
Query: 137 SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDAN------NIAPHITPESN------ 184
F +++ +G+ G N L V AN N+ PE +
Sbjct: 229 ---FDAVFIGSGAGLPKFMGIPGEN----LNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281
Query: 185 --VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK--GVK 240
V V+G + M+AA V +V R + +E+ R+ ++ +K GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARVEEVHHAKEEGVI 334
Query: 241 FVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGT 280
F + N +E V + + D VI+ +GT
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394
Query: 281 VLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDI 319
N KG+++N + +V +E T+ GV+AGGD
Sbjct: 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435
Score = 49.2 bits (118), Expect = 1e-05
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 81/341 (23%)
Query: 581 KKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYFITDE 629
++ + +++ V+G GP+G TC L + G+ G L + E
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE 185
Query: 630 NFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 688
LP + V + K+++ IK + + T +V+ GK + D L E+
Sbjct: 186 FRLPKETV-VKKEIENIKKLGVKIET---------NVVVGKTVTIDELLEEEG------- 228
Query: 689 SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDAN------NIAPHITPESN------ 736
F +++ +G+ G N L V AN N+ PE +
Sbjct: 229 ---FDAVFIGSGAGLPKFMGIPGEN----LNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281
Query: 737 --VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK--GVK 792
V V+G + M+AA V +V R + +E+ R+ ++ +K GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARVEEVHHAKEEGVI 334
Query: 793 FVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGT 832
F + N +E V + + D VI+ +GT
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394
Query: 833 VLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDI 871
N KG+++N + +V +E T+ GV+AGGD
Sbjct: 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435
Score = 49.2 bits (118), Expect = 1e-05
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 81/341 (23%)
Query: 1052 KKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYFITDE 1100
++ + +++ V+G GP+G TC L + G+ G L + E
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE 185
Query: 1101 NFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 1159
LP + V + K+++ IK + + T +V+ GK + D L E+
Sbjct: 186 FRLPKETV-VKKEIENIKKLGVKIET---------NVVVGKTVTIDELLEEEG------- 228
Query: 1160 SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDAN------NIAPHITPESN------ 1207
F +++ +G+ G N L V AN N+ PE +
Sbjct: 229 ---FDAVFIGSGAGLPKFMGIPGEN----LNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281
Query: 1208 --VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK--GVK 1263
V V+G + M+AA V +V R + +E+ R+ ++ +K GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARVEEVHHAKEEGVI 334
Query: 1264 FVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGT 1303
F + N +E V + + D VI+ +GT
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394
Query: 1304 VLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDI 1342
N KG+++N + +V +E T+ GV+AGGD
Sbjct: 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 48.7 bits (116), Expect = 2e-05
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 202
I +ATG P G + Y T +D I +++G+S+IG+E A F
Sbjct: 148 ILIATGGRPSIPEDVPGAKE--YSITSDD---IFSLSKDPGKTLIVGASYIGLETAGFLN 202
Query: 203 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 262
VTV R ++P + ++ E++ + + +G F V + +D
Sbjct: 203 ELGFDVTVAVR-SIPLR-GFDRQCSEKVVEYMKEQGTLF--LEGVVPINIEKMDDKIKVL 258
Query: 263 LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYLETNVPGVYAGGDI 319
+GTT D V+ G + L+ GV +N K + N+ TN+P ++A GD+
Sbjct: 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDV 316
Query: 320 A 320
Sbjct: 317 V 317
Score = 48.7 bits (116), Expect = 2e-05
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 695 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 754
I +ATG P G + Y T +D I +++G+S+IG+E A F
Sbjct: 148 ILIATGGRPSIPEDVPGAKE--YSITSDD---IFSLSKDPGKTLIVGASYIGLETAGFLN 202
Query: 755 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 814
VTV R ++P + ++ E++ + + +G F V + +D
Sbjct: 203 ELGFDVTVAVR-SIPLR-GFDRQCSEKVVEYMKEQGTLF--LEGVVPINIEKMDDKIKVL 258
Query: 815 LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYLETNVPGVYAGGDI 871
+GTT D V+ G + L+ GV +N K + N+ TN+P ++A GD+
Sbjct: 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDV 316
Query: 872 A 872
Sbjct: 317 V 317
Score = 48.7 bits (116), Expect = 2e-05
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 1166 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225
I +ATG P G + Y T +D I +++G+S+IG+E A F
Sbjct: 148 ILIATGGRPSIPEDVPGAKE--YSITSDD---IFSLSKDPGKTLIVGASYIGLETAGFLN 202
Query: 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285
VTV R ++P + ++ E++ + + +G F V + +D
Sbjct: 203 ELGFDVTVAVR-SIPLR-GFDRQCSEKVVEYMKEQGTLF--LEGVVPINIEKMDDKIKVL 258
Query: 1286 LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYLETNVPGVYAGGDI 1342
+GTT D V+ G + L+ GV +N K + N+ TN+P ++A GD+
Sbjct: 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDV 316
Query: 1343 A 1343
Sbjct: 317 V 317
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 47.8 bits (114), Expect = 3e-05
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 136 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--------PESNV-- 185
S+ + K+ +A G+ P T + + F+L+ V A I I P ++V
Sbjct: 110 FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEE 169
Query: 186 -------VVIGSSFIGMEAAAFCASKVK--------------SVTVVGRGAVPFQESLGK 224
VV+G G+E AA A + VTV+ G+ S +
Sbjct: 170 RKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQ 228
Query: 225 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI--VGIGTVL 282
+ + + GV K V E +K V +G IP LV+ G+G
Sbjct: 229 ALRKYGQRRLRRLGVDIRTKTAVK--EVLDKEVVL----KDGEVIPTGLVVWSTGVGPGP 282
Query: 283 NTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIA 320
T L V+ + + V+++L +P V+A GD A
Sbjct: 283 LTKQLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
Score = 47.8 bits (114), Expect = 3e-05
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 688 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--------PESNV-- 737
S+ + K+ +A G+ P T + + F+L+ V A I I P ++V
Sbjct: 110 FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEE 169
Query: 738 -------VVIGSSFIGMEAAAFCASKVK--------------SVTVVGRGAVPFQESLGK 776
VV+G G+E AA A + VTV+ G+ S +
Sbjct: 170 RKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQ 228
Query: 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI--VGIGTVL 834
+ + + GV K V E +K V +G IP LV+ G+G
Sbjct: 229 ALRKYGQRRLRRLGVDIRTKTAVK--EVLDKEVVL----KDGEVIPTGLVVWSTGVGPGP 282
Query: 835 NTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIA 872
T L V+ + + V+++L +P V+A GD A
Sbjct: 283 LTKQLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
Score = 47.8 bits (114), Expect = 3e-05
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 1159 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--------PESNV-- 1208
S+ + K+ +A G+ P T + + F+L+ V A I I P ++V
Sbjct: 110 FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEE 169
Query: 1209 -------VVIGSSFIGMEAAAFCASKVK--------------SVTVVGRGAVPFQESLGK 1247
VV+G G+E AA A + VTV+ G+ S +
Sbjct: 170 RKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQ 228
Query: 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI--VGIGTVL 1305
+ + + GV K V E +K V +G IP LV+ G+G
Sbjct: 229 ALRKYGQRRLRRLGVDIRTKTAVK--EVLDKEVVL----KDGEVIPTGLVVWSTGVGPGP 282
Query: 1306 NTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIA 1343
T L V+ + + V+++L +P V+A GD A
Sbjct: 283 LTKQLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
Score = 30.1 bits (68), Expect = 9.1
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 30/158 (18%)
Query: 45 TFIVVGGGPSG----ATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILL 100
F+VVGGGP+G A + R D L + V+ K ++A S +L
Sbjct: 175 HFVVVGGGPTGVEFAAELADFFRD-----------DVRNLNPELVEECKVTVLEAGSEVL 223
Query: 101 RT---------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 151
+ + + + + + E+ +K++ L+DG I + +TG P
Sbjct: 224 GSFDQALRKYGQRRLRRLGVDIRTKTAVK---EVLDKEVVLKDGEVIPTGLVVWSTGVGP 280
Query: 152 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 189
+++ V+K R D + + P NV +G
Sbjct: 281 GPLTKQLKVDKTSRGRISVDDH---LRVKPIPNVFALG 315
Score = 30.1 bits (68), Expect = 9.1
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 30/158 (18%)
Query: 597 TFIVVGGGPSG----ATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILL 652
F+VVGGGP+G A + R D L + V+ K ++A S +L
Sbjct: 175 HFVVVGGGPTGVEFAAELADFFRD-----------DVRNLNPELVEECKVTVLEAGSEVL 223
Query: 653 RT---------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 703
+ + + + + + E+ +K++ L+DG I + +TG P
Sbjct: 224 GSFDQALRKYGQRRLRRLGVDIRTKTAVK---EVLDKEVVLKDGEVIPTGLVVWSTGVGP 280
Query: 704 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 741
+++ V+K R D + + P NV +G
Sbjct: 281 GPLTKQLKVDKTSRGRISVDDH---LRVKPIPNVFALG 315
Score = 30.1 bits (68), Expect = 9.1
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 30/158 (18%)
Query: 1068 TFIVVGGGPSG----ATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILL 1123
F+VVGGGP+G A + R D L + V+ K ++A S +L
Sbjct: 175 HFVVVGGGPTGVEFAAELADFFRD-----------DVRNLNPELVEECKVTVLEAGSEVL 223
Query: 1124 RT---------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 1174
+ + + + + + E+ +K++ L+DG I + +TG P
Sbjct: 224 GSFDQALRKYGQRRLRRLGVDIRTKTAVK---EVLDKEVVLKDGEVIPTGLVVWSTGVGP 280
Query: 1175 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212
+++ V+K R D + + P NV +G
Sbjct: 281 GPLTKQLKVDKTSRGRISVDDH---LRVKPIPNVFALG 315
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 47.3 bits (113), Expect = 5e-05
Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 89/353 (25%)
Query: 48 VVGGGPSGATCVETLRQNG-----------FTGKLYFITDENFLPYDRVKLSKQLDIKAD 96
V+G GP+G + L + G G L + + LP D +
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDIL----------- 176
Query: 97 SILLRTEEFYKDNDIHVIK--GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRT 153
D + +++ G + + + + I L++ ++ ++LATG+ PR
Sbjct: 177 -----------DRRLELLERSGVEFKLNVRVG-RDITLEE-LLKEYDAVFLATGAGKPRP 223
Query: 154 I----SQADGVNKVF-YLRTV--EDANNIAPHITPES---NVVVIGSSFIGMEAAAFCAS 203
+ A GV +L + E + A TP + VVVIG M+ A +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG--TA 281
Query: 204 KV---KSVTVVGR-------GAVPFQ--ESLGKEVGER-ITKLFESKGVKFVMKAN---- 246
KSVT R P + + GE + +L + F+
Sbjct: 282 LRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVT 341
Query: 247 VSSFEKNEKNDVTAANLDNGT--------TIPADLVIVGIGTVLNTNYLDGK--GVELNG 296
F + E + G T AD VI+ IG + G++L+
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 297 QKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 348
+ + V+E L +T++PGV+AGGD A + A GR AA
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDA--------VRGAALVVW---AIAEGREAA 443
Score = 47.3 bits (113), Expect = 5e-05
Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 89/353 (25%)
Query: 600 VVGGGPSGATCVETLRQNG-----------FTGKLYFITDENFLPYDRVKLSKQLDIKAD 648
V+G GP+G + L + G G L + + LP D +
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDIL----------- 176
Query: 649 SILLRTEEFYKDNDIHVIK--GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRT 705
D + +++ G + + + + I L++ ++ ++LATG+ PR
Sbjct: 177 -----------DRRLELLERSGVEFKLNVRVG-RDITLEE-LLKEYDAVFLATGAGKPRP 223
Query: 706 I----SQADGVNKVF-YLRTV--EDANNIAPHITPES---NVVVIGSSFIGMEAAAFCAS 755
+ A GV +L + E + A TP + VVVIG M+ A +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG--TA 281
Query: 756 KV---KSVTVVGR-------GAVPFQ--ESLGKEVGER-ITKLFESKGVKFVMKAN---- 798
KSVT R P + + GE + +L + F+
Sbjct: 282 LRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVT 341
Query: 799 VSSFEKNEKNDVTAANLDNGT--------TIPADLVIVGIGTVLNTNYLDGK--GVELNG 848
F + E + G T AD VI+ IG + G++L+
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 849 QKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 900
+ + V+E L +T++PGV+AGGD A + A GR AA
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDA--------VRGAALVVW---AIAEGREAA 443
Score = 47.3 bits (113), Expect = 5e-05
Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 89/353 (25%)
Query: 1071 VVGGGPSGATCVETLRQNG-----------FTGKLYFITDENFLPYDRVKLSKQLDIKAD 1119
V+G GP+G + L + G G L + + LP D +
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDIL----------- 176
Query: 1120 SILLRTEEFYKDNDIHVIK--GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRT 1176
D + +++ G + + + + I L++ ++ ++LATG+ PR
Sbjct: 177 -----------DRRLELLERSGVEFKLNVRVG-RDITLEE-LLKEYDAVFLATGAGKPRP 223
Query: 1177 I----SQADGVNKVF-YLRTV--EDANNIAPHITPES---NVVVIGSSFIGMEAAAFCAS 1226
+ A GV +L + E + A TP + VVVIG M+ A +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG--TA 281
Query: 1227 KV---KSVTVVGR-------GAVPFQ--ESLGKEVGER-ITKLFESKGVKFVMKAN---- 1269
KSVT R P + + GE + +L + F+
Sbjct: 282 LRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVT 341
Query: 1270 VSSFEKNEKNDVTAANLDNGT--------TIPADLVIVGIGTVLNTNYLDGK--GVELNG 1319
F + E + G T AD VI+ IG + G++L+
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 1320 QKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 1371
+ + V+E L +T++PGV+AGGD A + A GR AA
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDA--------VRGAALVVW---AIAEGREAA 443
Score = 33.0 bits (76), Expect = 1.2
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGR----GAV-----PFQESLGKEVGERITKLFE 235
V VIG+ G+ AA + VTV R G + P L K++ +R +L E
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP-DFKLPKDILDRRLELLE 184
Query: 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 295
GV+F + V D+T L D V + G LD G +
Sbjct: 185 RSGVEFKLNVRVGR-------DITLEELLKEY----DAVFLATGAGKP-RPLDIPGEDAK 232
Query: 296 GQKAVVVNEYLETNV 310
G + ++L
Sbjct: 233 GVAFAL--DFLTRLN 245
Score = 33.0 bits (76), Expect = 1.2
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGR----GAV-----PFQESLGKEVGERITKLFE 787
V VIG+ G+ AA + VTV R G + P L K++ +R +L E
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP-DFKLPKDILDRRLELLE 184
Query: 788 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 847
GV+F + V D+T L D V + G LD G +
Sbjct: 185 RSGVEFKLNVRVGR-------DITLEELLKEY----DAVFLATGAGKP-RPLDIPGEDAK 232
Query: 848 GQKAVVVNEYLETNV 862
G + ++L
Sbjct: 233 GVAFAL--DFLTRLN 245
Score = 33.0 bits (76), Expect = 1.2
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGR----GAV-----PFQESLGKEVGERITKLFE 1258
V VIG+ G+ AA + VTV R G + P L K++ +R +L E
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP-DFKLPKDILDRRLELLE 184
Query: 1259 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 1318
GV+F + V D+T L D V + G LD G +
Sbjct: 185 RSGVEFKLNVRVGR-------DITLEELLKEY----DAVFLATGAGKP-RPLDIPGEDAK 232
Query: 1319 GQKAVVVNEYLETNV 1333
G + ++L
Sbjct: 233 GVAFAL--DFLTRLN 245
>gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite
reductase (NirD) family, Rieske domain; composed of
proteins similar to the Bacillus subtilis small subunit
of assimilatory nitrite reductase containing a Rieske
domain. The Rieske domain is a [2Fe-2S] cluster binding
domain involved in electron transfer. Assimilatory
nitrate and nitrite reductases convert nitrate through
nitrite to ammonium.
Length = 98
Score = 42.6 bits (101), Expect = 8e-05
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
++A+ +C H G PL +G + V CP H ++ TG+ + P + + V +++
Sbjct: 35 VFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PDEGCVRTFPVKVEDG 93
Query: 567 D 567
Sbjct: 94 R 94
Score = 42.6 bits (101), Expect = 8e-05
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
++A+ +C H G PL +G + V CP H ++ TG+ + P + + V +++
Sbjct: 35 VFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PDEGCVRTFPVKVEDG 93
Query: 1038 D 1038
Sbjct: 94 R 94
>gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a
rieske non-heme iron-sulfur protein located within the
plastid-envelope inner and thylakoid membranes, that
catalyzes the conversion of chlorophyllide a to
chlorophyllide b. CAO is found not only in plants but
also in chlorophytes and prochlorophytes. This domain
represents the N-terminal rieske domain of the oxygenase
alpha subunit. ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. Cao is closely related to several other plant
RO's including Tic 55, a 55 kDa protein associated with
protein transport through the inner chloroplast
membrane; Ptc 52, a novel 52 kDa protein isolated from
chloroplasts; and LLS1/Pao (Lethal-leaf spot
1/pheophorbide a oxygenase).
Length = 129
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFP-------GMDSLPC 558
C+H PL G + +GR++CP+HG ++ G+ P G+ +LPC
Sbjct: 59 CAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPC 109
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFP-------GMDSLPC 1029
C+H PL G + +GR++CP+HG ++ G+ P G+ +LPC
Sbjct: 59 CAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPC 109
>gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO)
family, N-terminal Rieske domain of the oxygenase alpha
subunit; The RO family comprise a large class of
aromatic ring-hydroxylating dioxygenases found
predominantly in microorganisms. These enzymes enable
microorganisms to tolerate and even exclusively utilize
aromatic compounds for growth. ROs consist of two or
three components: reductase, oxygenase, and ferredoxin
(in some cases) components. The oxygenase component may
contain alpha and beta subunits, with the beta subunit
having a purely structural function. Some oxygenase
components contain only an alpha subunit. The oxygenase
alpha subunit has two domains, an N-terminal Rieske
domain with an [2Fe-2S] cluster and a C-terminal
catalytic domain with a mononuclear Fe(II) binding site.
The Rieske [2Fe-2S] cluster accepts electrons from the
reductase or ferredoxin component and transfers them to
the mononuclear iron for catalysis. Reduced pyridine
nucleotide is used as the initial source of two
electrons for dioxygen activation.
Length = 118
Score = 41.0 bits (97), Expect = 4e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 514 CSHYGAPLVKGSLG-DGRVRCPWHGACFN-----IATGDIEDFPGMD----SLPCYKVTI 563
C H GA L +G G GR+ CP+HG ++ + E FPG D L V
Sbjct: 43 CPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEE 102
Query: 564 QND 566
Sbjct: 103 WGG 105
Score = 41.0 bits (97), Expect = 4e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 985 CSHYGAPLVKGSLG-DGRVRCPWHGACFN-----IATGDIEDFPGMD----SLPCYKVTI 1034
C H GA L +G G GR+ CP+HG ++ + E FPG D L V
Sbjct: 43 CPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEE 102
Query: 1035 QND 1037
Sbjct: 103 WGG 105
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 44.3 bits (105), Expect = 5e-04
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 139 DFTKIYLATGSSPRTI-----SQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSF 192
+F + LA G+ + + GV + + +LR V A H P VVVIG
Sbjct: 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT--ALH--PGKKVVVIGGGN 333
Query: 193 IGMEAA--AFCASKVKSVTVV---GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247
++AA A +SVT++ R +P + E+ E + ++GV A
Sbjct: 334 TAIDAARTALRLG-AESVTILYRRTREEMPANRA---EIEEAL-----AEGVSLRELAAP 384
Query: 248 SSFEKNEKN-DVTAANLDNGT-----------------TIPADLVIVGIGTVLNTNYLDG 289
S E++E ++TA + G T+ AD VI IG ++ +
Sbjct: 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA 444
Query: 290 KGVELNGQKAVVVN-EYLETNVPGVYAGGD 318
G+ + V V+ E L+T+V GV+AGGD
Sbjct: 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
Score = 44.3 bits (105), Expect = 5e-04
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 691 DFTKIYLATGSSPRTI-----SQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744
+F + LA G+ + + GV + + +LR V A H P VVVIG
Sbjct: 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT--ALH--PGKKVVVIGGGN 333
Query: 745 IGMEAA--AFCASKVKSVTVV---GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799
++AA A +SVT++ R +P + E+ E + ++GV A
Sbjct: 334 TAIDAARTALRLG-AESVTILYRRTREEMPANRA---EIEEAL-----AEGVSLRELAAP 384
Query: 800 SSFEKNEKN-DVTAANLDNGT-----------------TIPADLVIVGIGTVLNTNYLDG 841
S E++E ++TA + G T+ AD VI IG ++ +
Sbjct: 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA 444
Query: 842 KGVELNGQKAVVVN-EYLETNVPGVYAGGD 870
G+ + V V+ E L+T+V GV+AGGD
Sbjct: 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
Score = 44.3 bits (105), Expect = 5e-04
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 1162 DFTKIYLATGSSPRTI-----SQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+F + LA G+ + + GV + + +LR V A H P VVVIG
Sbjct: 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT--ALH--PGKKVVVIGGGN 333
Query: 1216 IGMEAA--AFCASKVKSVTVV---GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 1270
++AA A +SVT++ R +P + E+ E + ++GV A
Sbjct: 334 TAIDAARTALRLG-AESVTILYRRTREEMPANRA---EIEEAL-----AEGVSLRELAAP 384
Query: 1271 SSFEKNEKN-DVTAANLDNGT-----------------TIPADLVIVGIGTVLNTNYLDG 1312
S E++E ++TA + G T+ AD VI IG ++ +
Sbjct: 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA 444
Query: 1313 KGVELNGQKAVVVN-EYLETNVPGVYAGGD 1341
G+ + V V+ E L+T+V GV+AGGD
Sbjct: 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 130 IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVV 187
++L DG ++ + ATG S P+ + +L V + ++ V V
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERIDLKG-----KTVAV 171
Query: 188 IGSSFIGMEAAAFCASKVKSVTVVGR 213
IG ++AA K VT + R
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITR 197
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 682 IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVV 739
++L DG ++ + ATG S P+ + +L V + ++ V V
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERIDLKG-----KTVAV 171
Query: 740 IGSSFIGMEAAAFCASKVKSVTVVGR 765
IG ++AA K VT + R
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITR 197
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 1153 IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVV 1210
++L DG ++ + ATG S P+ + +L V + ++ V V
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERIDLKG-----KTVAV 171
Query: 1211 IGSSFIGMEAAAFCASKVKSVTVVGR 1236
IG ++AA K VT + R
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITR 197
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 42.8 bits (101), Expect = 0.001
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 235 ESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGTTIPADLVIVGIGTVLNTNYLD---G 289
+ KGVKF K V F++ + D + + AD+V+ IG + +YL
Sbjct: 494 KVKGVKF--KKCVEVFDEEGR---FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELK 548
Query: 290 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+E + ++ NEY +T++P ++AGGDI + P
Sbjct: 549 SKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
Score = 42.8 bits (101), Expect = 0.001
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGTTIPADLVIVGIGTVLNTNYLD---G 841
+ KGVKF K V F++ + D + + AD+V+ IG + +YL
Sbjct: 494 KVKGVKF--KKCVEVFDEEGR---FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELK 548
Query: 842 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+E + ++ NEY +T++P ++AGGDI + P
Sbjct: 549 SKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
Score = 42.8 bits (101), Expect = 0.001
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 1258 ESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGTTIPADLVIVGIGTVLNTNYLD---G 1312
+ KGVKF K V F++ + D + + AD+V+ IG + +YL
Sbjct: 494 KVKGVKF--KKCVEVFDEEGR---FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELK 548
Query: 1313 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+E + ++ NEY +T++P ++AGGDI + P
Sbjct: 549 SKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
>gnl|CDD|131430 TIGR02377, MocE_fam_FeS, Rieske [2Fe-2S] domain protein, MocE
subfamily. This model describes a subfamily of the
Rieske-like [2Fe-2S] family of ferredoxins that includes
MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine)
catabolic cluster in Rhizobium. Members of this family
are related to, yet distinct from, the small subunit of
nitrite reductase [NAD(P)H].
Length = 101
Score = 39.1 bits (91), Expect = 0.002
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVT 1033
+ YA C+H A L G + D V CP H CF+ TG+ + P +L Y V
Sbjct: 32 PDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVK 91
Query: 1034 IQNDDSVVVQ 1043
+ D +V V
Sbjct: 92 V-VDGAVYVD 100
Score = 38.3 bits (89), Expect = 0.003
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
YA C+H A L G + D V CP H CF+ TG+ + P +L Y V + D
Sbjct: 36 YYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKV-VD 94
Query: 567 DSVVVQ 572
+V V
Sbjct: 95 GAVYVD 100
>gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the
N-terminal rieske domain of the oxygenase alpha subunit
of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel
Rieske N-oxygenase that catalyzes the final step in the
pyrrolnitrin biosynthetic pathway, the oxidation of the
amino group in aminopyrrolnitrin to a nitro group,
forming the antibiotic pyrrolnitrin. The biosynthesis of
pyrrolnitrin is one of the best examples of
enzyme-catalyzed arylamine oxidation. Although arylamine
oxygenases are widely distributed within the microbial
world and used in a variety of metabolic reactions, PrnD
represents one of only two known examples of arylamine
oxygenases or N-oxygenases involved in arylnitro group
formation, the other being AurF involved in aureothin
biosynthesis.
Length = 123
Score = 39.5 bits (92), Expect = 0.002
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 948 FTAYYSNA--DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCP 1005
+ A S+ DK + G +A + A + CSH GA L G + DG ++CP
Sbjct: 5 YVAMRSDDLKDKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCP 64
Query: 1006 WH-------GACFNIATGDIEDFPGMDSLP 1028
+H G C +I G ++ +P
Sbjct: 65 FHHWRYDEQGQCVHIP-GHSTAVRRLEPVP 93
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWH-------GACFNIATGDIEDFPGMDSLP 557
CSH GA L G + DG ++CP+H G C +I G ++ +P
Sbjct: 44 CSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP-GHSTAVRRLEPVP 93
>gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO)
family, Pheophorbide a oxygenase (PaO) subfamily,
N-terminal Rieske domain of the oxygenase alpha subunit;
composed of the oxygenase alpha subunits of a small
subfamily of enzymes found in plants as well as oxygenic
cyanobacterial photosynthesizers including LLS1 (lethal
leaf spot 1, also known as PaO) and ACD1 (accelerated
cell death 1). ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. PaO expression increases upon physical
wounding of plant leaves and is thought to catalyze a
key step in chlorophyll degradation. The
Arabidopsis-accelerated cell death gene ACD1 is involved
in oxygenation of PaO.
Length = 138
Score = 38.1 bits (89), Expect = 0.006
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 513 KCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFP 551
+C H APL +G + +G + CP+HG F+ +G + P
Sbjct: 59 QCPHRLAPLSEGRIDEEGCLECPYHGWSFD-GSGSCQRIP 97
Score = 38.1 bits (89), Expect = 0.006
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 984 KCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFP 1022
+C H APL +G + +G + CP+HG F+ +G + P
Sbjct: 59 QCPHRLAPLSEGRIDEEGCLECPYHGWSFD-GSGSCQRIP 97
>gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase
(RO) family, Phthalate 4,5-dioxygenase (PhDO)-like
subfamily, N-terminal Rieske domain of the oxygenase
alpha subunit; composed of the oxygenase alpha subunits
of PhDO and similar proteins including 3-chlorobenzoate
3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase
(POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA).
ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. PhDO and CBDO are two-component RO systems,
containing oxygenase and reductase components. PhDO
catalyzes the dihydroxylation of phthalate to form the
4,5-dihydro-cis-dihydrodiol of phthalate (DHD). CBDO,
together with CbaC dehydrogenase, converts the
environmental pollutant 3CBA to protocatechuate (PCA)
and 5-Cl-PCA, which are then metabolized by the
chromosomal PCA meta (extradiol) ring fission pathway.
POB-dioxygenase catalyzes the initial catabolic step in
the angular dioxygenation of phenoxybenzoate, converting
mono- and dichlorinated phenoxybenzoates to
protocatechuate and chlorophenols. These
phenoxybenzoates are metabolic products formed during
the degradation of pyrethroid insecticides.
Length = 144
Score = 38.0 bits (89), Expect = 0.008
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG 552
C H GA LV G + + +RC +HG F+ G + P
Sbjct: 64 CPHRGASLVFGRVEECGLRCCYHGWKFD-VDGQCLEMPS 101
Score = 38.0 bits (89), Expect = 0.008
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG 1023
C H GA LV G + + +RC +HG F+ G + P
Sbjct: 64 CPHRGASLVFGRVEECGLRCCYHGWKFD-VDGQCLEMPS 101
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 39.6 bits (93), Expect = 0.013
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+V + I + ES G + V E E N+V L G I AD V++ G
Sbjct: 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG 227
Score = 39.6 bits (93), Expect = 0.013
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
+V + I + ES G + V E E N+V L G I AD V++ G
Sbjct: 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG 227
Score = 39.6 bits (93), Expect = 0.013
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
+V + I + ES G + V E E N+V L G I AD V++ G
Sbjct: 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG 227
>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase.
Length = 536
Score = 39.3 bits (91), Expect = 0.016
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 510 VGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG-------MDSLPC 558
V C+H PL G++ +GR++CP+HG ++ G+ + P + SLPC
Sbjct: 258 VRNTCAHRACPLDLGTVNEGRIQCPYHGWEYS-TDGECKKMPSTKLLKVKIKSLPC 312
Score = 39.3 bits (91), Expect = 0.016
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 981 VGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG-------MDSLPC 1029
V C+H PL G++ +GR++CP+HG ++ G+ + P + SLPC
Sbjct: 258 VRNTCAHRACPLDLGTVNEGRIQCPYHGWEYS-TDGECKKMPSTKLLKVKIKSLPC 312
>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional.
Length = 394
Score = 38.9 bits (90), Expect = 0.019
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 496 PKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHG 537
P L + + +C+H PL G L DG+ +CP+HG
Sbjct: 97 PWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHG 138
Score = 38.5 bits (89), Expect = 0.024
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHG 1008
A+ + +C+H PL G L DG+ +CP+HG
Sbjct: 104 ADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHG 138
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 38.0 bits (89), Expect = 0.031
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 269 IPADLVIVGIGTV----LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
+ AD V+ IG + L G+ELN + +VV+E T+ GV+A GD+ P
Sbjct: 273 LEADTVVFAIGEIPTPPFAKECL---GIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP- 328
Query: 325 HSFYNKNASIGHYQLAQYHGRIAA 348
+ IG A G AA
Sbjct: 329 -------SKIG---KAIKSGLRAA 342
Score = 38.0 bits (89), Expect = 0.031
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 821 IPADLVIVGIGTV----LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
+ AD V+ IG + L G+ELN + +VV+E T+ GV+A GD+ P
Sbjct: 273 LEADTVVFAIGEIPTPPFAKECL---GIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP- 328
Query: 877 HSFYNKNASIGHYQLAQYHGRIAA 900
+ IG A G AA
Sbjct: 329 -------SKIG---KAIKSGLRAA 342
Score = 38.0 bits (89), Expect = 0.031
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 1292 IPADLVIVGIGTV----LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
+ AD V+ IG + L G+ELN + +VV+E T+ GV+A GD+ P
Sbjct: 273 LEADTVVFAIGEIPTPPFAKECL---GIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP- 328
Query: 1348 HSFYNKNASIGHYQLAQYHGRIAA 1371
+ IG A G AA
Sbjct: 329 -------SKIG---KAIKSGLRAA 342
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 38.1 bits (89), Expect = 0.033
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 300 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQY-HGRIAALNMVE 353
V VNE ET VPG+YA GD+ AS+ H Y L + +G A N E
Sbjct: 359 VWVNEKAETTVPGLYAAGDM------------ASVPHNYMLGAFTYGWFAGENAAE 402
Score = 38.1 bits (89), Expect = 0.033
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 852 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQY-HGRIAALNMVE 905
V VNE ET VPG+YA GD+ AS+ H Y L + +G A N E
Sbjct: 359 VWVNEKAETTVPGLYAAGDM------------ASVPHNYMLGAFTYGWFAGENAAE 402
Score = 38.1 bits (89), Expect = 0.033
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 1323 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQY-HGRIAALNMVE 1376
V VNE ET VPG+YA GD+ AS+ H Y L + +G A N E
Sbjct: 359 VWVNEKAETTVPGLYAAGDM------------ASVPHNYMLGAFTYGWFAGENAAE 402
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 37.9 bits (88), Expect = 0.053
Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 37/226 (16%)
Query: 128 KKIKLQDGTSIDFTKIYLATGSS-PR-----------TISQADGVNKVFYLRTVEDANNI 175
K L+D + F KI++ TG+ P +S + + +V +R ++D
Sbjct: 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYET 440
Query: 176 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235
V VIG M+AA +VT+V R + + V E L E
Sbjct: 441 PLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT---KSEMPARVEELHHALEE 497
Query: 236 SKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NGTT--IPADLVIV 276
+ V++A + + VT A LD G +P DLVI+
Sbjct: 498 GINLA-VLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556
Query: 277 GIGTVLNTNYLDGK-GVELNGQKAVVVNE-YLETNVPGVYAGGDIA 320
+G N D + G++ N + V + T++ GVY+GGD A
Sbjct: 557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA 602
Score = 37.9 bits (88), Expect = 0.053
Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 37/226 (16%)
Query: 680 KKIKLQDGTSIDFTKIYLATGSS-PR-----------TISQADGVNKVFYLRTVEDANNI 727
K L+D + F KI++ TG+ P +S + + +V +R ++D
Sbjct: 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYET 440
Query: 728 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 787
V VIG M+AA +VT+V R + + V E L E
Sbjct: 441 PLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT---KSEMPARVEELHHALEE 497
Query: 788 SKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NGTT--IPADLVIV 828
+ V++A + + VT A LD G +P DLVI+
Sbjct: 498 GINLA-VLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556
Query: 829 GIGTVLNTNYLDGK-GVELNGQKAVVVNE-YLETNVPGVYAGGDIA 872
+G N D + G++ N + V + T++ GVY+GGD A
Sbjct: 557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA 602
Score = 37.9 bits (88), Expect = 0.053
Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 37/226 (16%)
Query: 1151 KKIKLQDGTSIDFTKIYLATGSS-PR-----------TISQADGVNKVFYLRTVEDANNI 1198
K L+D + F KI++ TG+ P +S + + +V +R ++D
Sbjct: 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYET 440
Query: 1199 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 1258
V VIG M+AA +VT+V R + + V E L E
Sbjct: 441 PLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT---KSEMPARVEELHHALEE 497
Query: 1259 SKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NGTT--IPADLVIV 1299
+ V++A + + VT A LD G +P DLVI+
Sbjct: 498 GINLA-VLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556
Query: 1300 GIGTVLNTNYLDGK-GVELNGQKAVVVNE-YLETNVPGVYAGGDIA 1343
+G N D + G++ N + V + T++ GVY+GGD A
Sbjct: 557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA 602
>gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General
function prediction only].
Length = 367
Score = 37.1 bits (86), Expect = 0.070
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 514 CSHYGAPLVKGSLGD-GRVRCPWHGACFN 541
C H GA L +G +G GR+ CP+HG ++
Sbjct: 69 CPHRGARLSEGRVGGKGRLTCPYHGWTYD 97
Score = 37.1 bits (86), Expect = 0.070
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 985 CSHYGAPLVKGSLGD-GRVRCPWHGACFN 1012
C H GA L +G +G GR+ CP+HG ++
Sbjct: 69 CPHRGARLSEGRVGGKGRLTCPYHGWTYD 97
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 36.7 bits (85), Expect = 0.10
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG---------AVPFQESLGKEVGERITKLFE 235
V V+GS G+ AA +VTV R +P L K + +R L
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP-NMKLDKAIVDRRIDLLS 204
Query: 236 SKGVKFVMKANVSSFEKNE--KNDVTAANLDNGTTIPADLVIVG 277
++G+ FV + + K A L G T P DL I G
Sbjct: 205 AEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPG 248
Score = 36.7 bits (85), Expect = 0.10
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG---------AVPFQESLGKEVGERITKLFE 787
V V+GS G+ AA +VTV R +P L K + +R L
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP-NMKLDKAIVDRRIDLLS 204
Query: 788 SKGVKFVMKANVSSFEKNE--KNDVTAANLDNGTTIPADLVIVG 829
++G+ FV + + K A L G T P DL I G
Sbjct: 205 AEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPG 248
Score = 36.7 bits (85), Expect = 0.10
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG---------AVPFQESLGKEVGERITKLFE 1258
V V+GS G+ AA +VTV R +P L K + +R L
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP-NMKLDKAIVDRRIDLLS 204
Query: 1259 SKGVKFVMKANVSSFEKNE--KNDVTAANLDNGTTIPADLVIVG 1300
++G+ FV + + K A L G T P DL I G
Sbjct: 205 AEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPG 248
Score = 31.0 bits (70), Expect = 6.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 268 TIPADLVIVGIGTV-LNTNYLDGKGVEL--NGQKAVVVNEYLETNVPGVYAGGD 318
ADLV++ +G V LD GV+ G + ++Y T++PGV+A GD
Sbjct: 400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDY-STSIPGVFAAGD 452
Score = 31.0 bits (70), Expect = 6.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 820 TIPADLVIVGIGTV-LNTNYLDGKGVEL--NGQKAVVVNEYLETNVPGVYAGGD 870
ADLV++ +G V LD GV+ G + ++Y T++PGV+A GD
Sbjct: 400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDY-STSIPGVFAAGD 452
Score = 31.0 bits (70), Expect = 6.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 1291 TIPADLVIVGIGTV-LNTNYLDGKGVEL--NGQKAVVVNEYLETNVPGVYAGGD 1341
ADLV++ +G V LD GV+ G + ++Y T++PGV+A GD
Sbjct: 400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDY-STSIPGVFAAGD 452
>gnl|CDD|205979 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.
Length = 104
Score = 32.9 bits (76), Expect = 0.29
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 973 FAERNIYAVGTKCSHYGA-PLVKGSLGD----GRVRCPWHGACFNIATGDIEDFPGMDSL 1027
+ +YA+ GA L +G +GD V P + F++ TG+ + P + SL
Sbjct: 31 LPDEQVYAIDNIDPFSGANVLSRGIIGDLGGEPVVASPLYKQHFDLRTGECLEDPSV-SL 89
Query: 1028 PCYKVTIQNDDSVVVQ 1043
P Y V ++ D V V
Sbjct: 90 PVYPVRVE-DGRVEVS 104
Score = 32.1 bits (74), Expect = 0.41
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 506 NIYAVGTKCSHYGA-PLVKGSLGD----GRVRCPWHGACFNIATGDIEDFPGMDSLPCYK 560
+YA+ GA L +G +GD V P + F++ TG+ + P + SLP Y
Sbjct: 35 QVYAIDNIDPFSGANVLSRGIIGDLGGEPVVASPLYKQHFDLRTGECLEDPSV-SLPVYP 93
Query: 561 VTIQNDDSVVVQ 572
V ++ D V V
Sbjct: 94 VRVE-DGRVEVS 104
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 34.6 bits (80), Expect = 0.43
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 230 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 276
+ KL E G + + A V E E TA +L +G + AD V+
Sbjct: 225 MAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVS 270
Score = 34.6 bits (80), Expect = 0.43
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 782 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 828
+ KL E G + + A V E E TA +L +G + AD V+
Sbjct: 225 MAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVS 270
Score = 34.6 bits (80), Expect = 0.43
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 1253 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299
+ KL E G + + A V E E TA +L +G + AD V+
Sbjct: 225 MAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVS 270
>gnl|CDD|223795 COG0723, QcrA, Rieske Fe-S protein [Energy production and
conversion].
Length = 177
Score = 33.6 bits (77), Expect = 0.43
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 9/125 (7%)
Query: 928 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFA-------ERNIYA 980
G A +VD G T + L T P + I A
Sbjct: 44 GGLAGAPIEVDDSGIGPGPLVTVPWRGKPVFLLRRTEYAGPKGGVTRDGDGGVGNKEIVA 103
Query: 981 VGTKCSHYG-APLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDS 1039
C+H G + +G CP HG+ ++ G + P LP + +D
Sbjct: 104 YSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPD-GGVVKGPAPRPLPIPPLEYDSDKL 162
Query: 1040 VVVQA 1044
++
Sbjct: 163 YLIGL 167
Score = 32.1 bits (73), Expect = 1.1
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 506 NIYAVGTKCSHYG-APLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQ 564
I A C+H G + +G CP HG+ ++ G + P LP +
Sbjct: 100 EIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPD-GGVVKGPAPRPLPIPPLEYD 158
Query: 565 NDDSVVVQA 573
+D ++
Sbjct: 159 SDKLYLIGL 167
>gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related
non-heme iron oxygenase associated with protein
transport through the plant inner chloroplast membrane.
This domain represents the N-terminal Rieske domain of
the Tic55 oxygenase alpha subunit. Tic55 is closely
related to the oxygenase alpha subunits of a small
subfamily of enzymes found in plants as well as oxygenic
cyanobacterial photosynthesizers including LLS1 (lethal
leaf spot 1, also known as PaO), Ptc52, and ACD1
(accelerated cell death 1). ROs comprise a large class
of aromatic ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis.
Length = 134
Score = 32.9 bits (75), Expect = 0.43
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 513 KCSHYGAPLVKGSLGDGRVRCPWHGACF 540
+C H A L +G L DG++ C +HG F
Sbjct: 58 RCPHRLAKLSEGQLIDGKLECLYHGWQF 85
Score = 32.9 bits (75), Expect = 0.43
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 984 KCSHYGAPLVKGSLGDGRVRCPWHGACF 1011
+C H A L +G L DG++ C +HG F
Sbjct: 58 RCPHRLAKLSEGQLIDGKLECLYHGWQF 85
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 34.4 bits (79), Expect = 0.44
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
++VG GP+G++ L + G
Sbjct: 7 VIVGAGPAGSSAARRLAKAGL 27
Score = 34.4 bits (79), Expect = 0.44
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
++VG GP+G++ L + G
Sbjct: 7 VIVGAGPAGSSAARRLAKAGL 27
Score = 34.4 bits (79), Expect = 0.44
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
++VG GP+G++ L + G
Sbjct: 7 VIVGAGPAGSSAARRLAKAGL 27
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 34.0 bits (78), Expect = 0.63
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 48 VVGGGPSGATCVETLRQNG 66
V+GGGPSGAT ETL + G
Sbjct: 5 VIGGGPSGATAAETLARAG 23
Score = 34.0 bits (78), Expect = 0.63
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 600 VVGGGPSGATCVETLRQNG 618
V+GGGPSGAT ETL + G
Sbjct: 5 VIGGGPSGATAAETLARAG 23
Score = 34.0 bits (78), Expect = 0.63
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 1071 VVGGGPSGATCVETLRQNG 1089
V+GGGPSGAT ETL + G
Sbjct: 5 VIGGGPSGATAAETLARAG 23
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 34.1 bits (78), Expect = 0.64
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
L+ GV+++ A+ V+EY T+VP ++A GD+
Sbjct: 357 LEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDV 389
Score = 34.1 bits (78), Expect = 0.64
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
L+ GV+++ A+ V+EY T+VP ++A GD+
Sbjct: 357 LEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDV 389
Score = 34.1 bits (78), Expect = 0.64
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
L+ GV+++ A+ V+EY T+VP ++A GD+
Sbjct: 357 LEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDV 389
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 33.8 bits (78), Expect = 0.68
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 300 VVVNEYLETNVPGVYAGGDIAYAPLH 325
V N ET++PG+YA G++A +H
Sbjct: 335 VKTNLDGETSIPGLYAIGEVACTGVH 360
Score = 33.8 bits (78), Expect = 0.68
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 852 VVVNEYLETNVPGVYAGGDIAYAPLH 877
V N ET++PG+YA G++A +H
Sbjct: 335 VKTNLDGETSIPGLYAIGEVACTGVH 360
Score = 33.8 bits (78), Expect = 0.68
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1323 VVVNEYLETNVPGVYAGGDIAYAPLH 1348
V N ET++PG+YA G++A +H
Sbjct: 335 VKTNLDGETSIPGLYAIGEVACTGVH 360
>gnl|CDD|188783 cd09397, LIM1_UF1, LIM domain in proteins of unknown function. The
first Lim domain of a LIM domain containing protein: The
functions of the proteins are unknown. The members of
this family contain two copies of LIM domain. The LIM
domain is 50-60 amino acids in size and shares two
characteristic zinc finger motifs. The two zinc fingers
contain eight conserved residues, mostly cysteines and
histidines, which coordinately bond to two zinc atoms.
LIM domains function as adaptors or scaffolds to support
the assembly of multimeric protein.
Length = 58
Score = 30.3 bits (69), Expect = 0.80
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 528 DGRVRCPWHGACFNIATGDIEDFPGMDSLPCY 559
DG + WH CF T F S+PCY
Sbjct: 17 DGELSGQWHRECFVCTTCGC-PFQ--FSVPCY 45
Score = 30.3 bits (69), Expect = 0.80
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 999 DGRVRCPWHGACFNIATGDIEDFPGMDSLPCY 1030
DG + WH CF T F S+PCY
Sbjct: 17 DGELSGQWHRECFVCTTCGC-PFQ--FSVPCY 45
>gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO)
family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily,
N-terminal Rieske domain of the oxygenase alpha subunit;
ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. HBDO catalyzes the double hydroxylation of
2-halobenzoates with concomitant release of halogenide
and carbon dioxide, yielding catechol.
Length = 123
Score = 31.6 bits (72), Expect = 0.86
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRV-RCPWHGACFN 541
P + + + A CSH GA L + G+ CP+HG F+
Sbjct: 24 QPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFS 71
Score = 29.3 bits (66), Expect = 6.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 962 LTVGMDPLAAQFAERN----IYAVGTKCSHYGAPLVKGSLGDGRV-RCPWHGACFN 1012
T+G P+ R+ + A CSH GA L + G+ CP+HG F+
Sbjct: 19 TTIGRQPV---VITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFS 71
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 33.3 bits (77), Expect = 0.89
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG 214
V+VIG G+ AA A K V +V +G
Sbjct: 5 VLVIGGGLAGLTAALAAAEAGKRVALVAKG 34
Score = 33.3 bits (77), Expect = 0.89
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG 766
V+VIG G+ AA A K V +V +G
Sbjct: 5 VLVIGGGLAGLTAALAAAEAGKRVALVAKG 34
Score = 33.3 bits (77), Expect = 0.89
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG 1237
V+VIG G+ AA A K V +V +G
Sbjct: 5 VLVIGGGLAGLTAALAAAEAGKRVALVAKG 34
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 32.8 bits (75), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 300 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333
+ V+++ T VPG+YA G++A LH N+ AS
Sbjct: 336 ISVDDHGRTTVPGLYAIGEVACTGLHG-ANRLAS 368
Score = 32.8 bits (75), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 852 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885
+ V+++ T VPG+YA G++A LH N+ AS
Sbjct: 336 ISVDDHGRTTVPGLYAIGEVACTGLHG-ANRLAS 368
Score = 32.8 bits (75), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1323 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356
+ V+++ T VPG+YA G++A LH N+ AS
Sbjct: 336 ISVDDHGRTTVPGLYAIGEVACTGLHG-ANRLAS 368
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 32.8 bits (75), Expect = 1.4
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 283
+ + + +L G + A VS E +G I AD V+ L
Sbjct: 224 GALVDALAELAREHGGEIRTGAEVSQIL-VEGGKGVGVRTSDGENIEADAVVSNADPALL 282
Query: 284 TNYLD 288
L
Sbjct: 283 ARLLG 287
Score = 32.8 bits (75), Expect = 1.4
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835
+ + + +L G + A VS E +G I AD V+ L
Sbjct: 224 GALVDALAELAREHGGEIRTGAEVSQIL-VEGGKGVGVRTSDGENIEADAVVSNADPALL 282
Query: 836 TNYLD 840
L
Sbjct: 283 ARLLG 287
Score = 32.8 bits (75), Expect = 1.4
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306
+ + + +L G + A VS E +G I AD V+ L
Sbjct: 224 GALVDALAELAREHGGEIRTGAEVSQIL-VEGGKGVGVRTSDGENIEADAVVSNADPALL 282
Query: 1307 TNYLD 1311
L
Sbjct: 283 ARLLG 287
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 32.9 bits (75), Expect = 1.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 269 IPADLVIVGIG-TVLNTNYLDGKGVELNGQKAVVVNEY----LETNVPGVYAGGDI 319
+PAD+VI+ G +L G G+ L+ ++ + +T P ++AGGD
Sbjct: 385 LPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDA 440
Score = 32.9 bits (75), Expect = 1.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 821 IPADLVIVGIG-TVLNTNYLDGKGVELNGQKAVVVNEY----LETNVPGVYAGGDI 871
+PAD+VI+ G +L G G+ L+ ++ + +T P ++AGGD
Sbjct: 385 LPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDA 440
Score = 32.9 bits (75), Expect = 1.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 1292 IPADLVIVGIG-TVLNTNYLDGKGVELNGQKAVVVNEY----LETNVPGVYAGGDI 1342
+PAD+VI+ G +L G G+ L+ ++ + +T P ++AGGD
Sbjct: 385 LPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDA 440
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 32.3 bits (74), Expect = 1.5
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 174 NIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
A + P V+V+G+ +G+ AA + V V R
Sbjct: 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168
Score = 32.3 bits (74), Expect = 1.5
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 726 NIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
A + P V+V+G+ +G+ AA + V V R
Sbjct: 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168
Score = 32.3 bits (74), Expect = 1.5
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 1197 NIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
A + P V+V+G+ +G+ AA + V V R
Sbjct: 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168
>gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO)
family, Nathphalene 1,2-dioxygenase (NDO) subfamily,
N-terminal Rieske domain of the oxygenase alpha subunit;
ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. NDO is a three-component RO system consisting
of a reductase, a ferredoxin, and a hetero-hexameric
alpha-beta subunit oxygenase component. NDO catalyzes
the oxidation of naphthalene to
cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene
(naphthalene cis-dihydrodiol) with the consumption of O2
and NAD(P)H. NDO has a relaxed substrate specificity and
can oxidize almost 100 substrates. Included in its
varied activities are the enantiospecific
cis-dihydroxylation of polycyclic aromatic hydrocarbons
and benzocycloalkenes, benzylic hydroxylation, N- and
O-dealkylation, sulfoxidation and desaturation
reactions.
Length = 123
Score = 30.9 bits (70), Expect = 1.7
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 505 SNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM 553
I A+ C H G + + +G+ RCP+HG + TG + P
Sbjct: 36 GEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYR-NTGRLVGVPAQ 84
Score = 30.5 bits (69), Expect = 2.3
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM 1024
I A+ C H G + + +G+ RCP+HG + TG + P
Sbjct: 37 EIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYR-NTGRLVGVPAQ 84
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 32.5 bits (74), Expect = 2.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 300 VVVNEYLETNVPGVYAGGDIAYAP 323
V V+E+ T VPG+YA GD+A P
Sbjct: 364 VWVDEHARTTVPGLYAAGDLACVP 387
Score = 32.5 bits (74), Expect = 2.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 852 VVVNEYLETNVPGVYAGGDIAYAP 875
V V+E+ T VPG+YA GD+A P
Sbjct: 364 VWVDEHARTTVPGLYAAGDLACVP 387
Score = 32.5 bits (74), Expect = 2.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1323 VVVNEYLETNVPGVYAGGDIAYAP 1346
V V+E+ T VPG+YA GD+A P
Sbjct: 364 VWVDEHARTTVPGLYAAGDLACVP 387
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 31.9 bits (73), Expect = 2.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVV 211
VVVIGS G+ AA A V VV
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVV 28
Score = 31.9 bits (73), Expect = 2.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVV 763
VVVIGS G+ AA A V VV
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVV 28
Score = 31.9 bits (73), Expect = 2.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVV 1234
VVVIGS G+ AA A V VV
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVV 28
>gnl|CDD|177713 PLN00093, PLN00093, geranylgeranyl diphosphate reductase;
Provisional.
Length = 450
Score = 32.0 bits (73), Expect = 2.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 40 SGNKDTFIVVGGGPSGATCVETLRQNG 66
SG K V+GGGP+GA ETL + G
Sbjct: 36 SGRKLRVAVIGGGPAGACAAETLAKGG 62
Score = 32.0 bits (73), Expect = 2.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 592 SGNKDTFIVVGGGPSGATCVETLRQNG 618
SG K V+GGGP+GA ETL + G
Sbjct: 36 SGRKLRVAVIGGGPAGACAAETLAKGG 62
Score = 32.0 bits (73), Expect = 2.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1063 SGNKDTFIVVGGGPSGATCVETLRQNG 1089
SG K V+GGGP+GA ETL + G
Sbjct: 36 SGRKLRVAVIGGGPAGACAAETLAKGG 62
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 29.0 bits (66), Expect = 2.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLY 72
+VG G SG L + G +
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVL 25
Score = 29.0 bits (66), Expect = 2.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLY 624
+VG G SG L + G +
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVL 25
Score = 29.0 bits (66), Expect = 2.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLY 1095
+VG G SG L + G +
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVL 25
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class
1. Superfamily of trans-isoprenyl diphosphate synthases
(IPPS) and class I terpene cyclases which either
synthesis geranyl/farnesyl diphosphates (GPP/FPP) or
longer chained products from isoprene precursors,
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP), or use geranyl (C10)-, farnesyl
(C15)-, or geranylgeranyl (C20)-diphosphate as substrate.
These enzymes produce a myriad of precursors for such end
products as steroids, cholesterol, sesquiterpenes, heme,
carotenoids, retinoids, and diterpenes; and are widely
distributed among archaea, bacteria, and eukaryota.The
enzymes in this superfamily share the same 'isoprenoid
synthase fold' and include several subgroups. The
head-to-tail (HT) IPPS catalyze the successive 1'-4
condensation of the 5-carbon IPP to the growing isoprene
chain to form linear, all-trans, C10-, C15-, C20- C25-,
C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates.
Cyclic monoterpenes, diterpenes, and sesquiterpenes, are
formed from their respective linear isoprenoid
diphosphates by class I terpene cyclases. The
head-to-head (HH) IPPS catalyze the successive 1'-1
condensation of 2 farnesyl or 2 geranylgeranyl isoprenoid
diphosphates. Cyclization of these 30- and 40-carbon
linear forms are catalyzed by class II cyclases. Both the
isoprenoid chain elongation reactions and the class I
terpene cyclization reactions proceed via electrophilic
alkylations in which a new carbon-carbon single bond is
generated through interaction between a highly reactive
electron-deficient allylic carbocation and an
electron-rich carbon-carbon double bond. The catalytic
site consists of a large central cavity formed by mostly
antiparallel alpha helices with two aspartate-rich
regions located on opposite walls. These residues mediate
binding of prenyl phosphates via bridging Mg2+ ions,
inducing proposed conformational changes that close the
active site to solvent, stabilizing reactive carbocation
intermediates. Generally, the enzymes in this family
exhibit an all-trans reaction pathway, an exception, is
the cis-trans terpene cyclase, trichodiene synthase.
Mechanistically and structurally distinct, class II
terpene cyclases and cis-IPPS are not included in this
CD.
Length = 243
Score = 31.3 bits (71), Expect = 3.0
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 1360 YQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA-GHTQVDIVGDLEALK 1418
LA A + ++ S + L + G + + V LE
Sbjct: 57 AILAGDLLLADAFEELAREGSPEALEILAEALLDL---LEGQLLDLKWRREYVPTLEEYL 113
Query: 1419 FTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKY 1453
Y A V A+ +G + ++K
Sbjct: 114 EYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKL 148
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding
component of ABC (ATPase Binding Cassette)-type
transport systems that are predicted to be involved in
uptake of amino acids. This subgroup includes the type
I periplasmic binding component of ABC (ATPase Binding
Cassette)-type transport systems that are predicted to
be involved in uptake of amino acids. Members of this
subgroup are sequence-similar to members of the family
of ABC-type hydrophobic amino acid transporters (HAAT),
such as leucine-isoleucine-valine-binding protein
(LIVBP); their ligand specificity has not been
determined experimentally, however.
Length = 312
Score = 31.4 bits (72), Expect = 3.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 13 NDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLY 72
D SV Q K+ + D ++ G G A + LR+ G+ G +Y
Sbjct: 173 TDTSVTAQL--------------LKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGPIY 218
Query: 73 F 73
Sbjct: 219 Q 219
Score = 31.4 bits (72), Expect = 3.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 565 NDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLY 624
D SV Q K+ + D ++ G G A + LR+ G+ G +Y
Sbjct: 173 TDTSVTAQL--------------LKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGPIY 218
Query: 625 F 625
Sbjct: 219 Q 219
Score = 31.4 bits (72), Expect = 3.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 1036 NDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLY 1095
D SV Q K+ + D ++ G G A + LR+ G+ G +Y
Sbjct: 173 TDTSVTAQL--------------LKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGPIY 218
Query: 1096 F 1096
Sbjct: 219 Q 219
>gnl|CDD|145032 pfam01672, Plasmid_parti, Putative plasmid partition protein. This
family consists of conserved hypothetical proteins from
Borrelia burgdorferi the lyme disease spirochaete, some
of which are putative plasmid partition proteins.
Length = 85
Score = 29.1 bits (66), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 60 ETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEE---FYKDN 109
E +++NG FI + +K SKQ IK L+ +E FYK N
Sbjct: 19 EYIKENGINNTYKFIKKKESS---NIKKSKQNPIKPLRFQLKDQESYDFYKKN 68
Score = 29.1 bits (66), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 612 ETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEE---FYKDN 661
E +++NG FI + +K SKQ IK L+ +E FYK N
Sbjct: 19 EYIKENGINNTYKFIKKKESS---NIKKSKQNPIKPLRFQLKDQESYDFYKKN 68
Score = 29.1 bits (66), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 1083 ETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEE---FYKDN 1132
E +++NG FI + +K SKQ IK L+ +E FYK N
Sbjct: 19 EYIKENGINNTYKFIKKKESS---NIKKSKQNPIKPLRFQLKDQESYDFYKKN 68
>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
Length = 321
Score = 31.6 bits (71), Expect = 3.6
Identities = 67/310 (21%), Positives = 113/310 (36%), Gaps = 50/310 (16%)
Query: 38 LSSGNKDTFIVVGGGPSGATC-VETLRQN-------GFT--GKLYFITDENFLPYDRVKL 87
+ + +++G GP+G T V R N G G+L T+ P D L
Sbjct: 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL 60
Query: 88 SKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYL 145
+ L ++ R E + +I I+ +L + +L G S ++T + +
Sbjct: 61 TGPL------LMERMHEHATKFETEIIFDH--INKVDLQNRPFRLT-GDSGEYTCDALII 111
Query: 146 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 205
ATG+S R + + F R V V VIG +E A + ++
Sbjct: 112 ATGASARYLGLPS--EEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIA 169
Query: 206 KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----- 260
V ++ R G R K+ + + V N+ +VT
Sbjct: 170 SEVHLIHR-----------RDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV 218
Query: 261 --------ANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAV---VVNEYLETN 309
N DN ++ + V IG NT +G+ NG V + +T+
Sbjct: 219 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTS 278
Query: 310 VPGVYAGGDI 319
+PGV+A GD+
Sbjct: 279 IPGVFAAGDV 288
Score = 31.6 bits (71), Expect = 3.6
Identities = 67/310 (21%), Positives = 113/310 (36%), Gaps = 50/310 (16%)
Query: 590 LSSGNKDTFIVVGGGPSGATC-VETLRQN-------GFT--GKLYFITDENFLPYDRVKL 639
+ + +++G GP+G T V R N G G+L T+ P D L
Sbjct: 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL 60
Query: 640 SKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYL 697
+ L ++ R E + +I I+ +L + +L G S ++T + +
Sbjct: 61 TGPL------LMERMHEHATKFETEIIFDH--INKVDLQNRPFRLT-GDSGEYTCDALII 111
Query: 698 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 757
ATG+S R + + F R V V VIG +E A + ++
Sbjct: 112 ATGASARYLGLPS--EEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIA 169
Query: 758 KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----- 812
V ++ R G R K+ + + V N+ +VT
Sbjct: 170 SEVHLIHR-----------RDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV 218
Query: 813 --------ANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAV---VVNEYLETN 861
N DN ++ + V IG NT +G+ NG V + +T+
Sbjct: 219 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTS 278
Query: 862 VPGVYAGGDI 871
+PGV+A GD+
Sbjct: 279 IPGVFAAGDV 288
Score = 31.6 bits (71), Expect = 3.6
Identities = 67/310 (21%), Positives = 113/310 (36%), Gaps = 50/310 (16%)
Query: 1061 LSSGNKDTFIVVGGGPSGATC-VETLRQN-------GFT--GKLYFITDENFLPYDRVKL 1110
+ + +++G GP+G T V R N G G+L T+ P D L
Sbjct: 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL 60
Query: 1111 SKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYL 1168
+ L ++ R E + +I I+ +L + +L G S ++T + +
Sbjct: 61 TGPL------LMERMHEHATKFETEIIFDH--INKVDLQNRPFRLT-GDSGEYTCDALII 111
Query: 1169 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 1228
ATG+S R + + F R V V VIG +E A + ++
Sbjct: 112 ATGASARYLGLPS--EEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIA 169
Query: 1229 KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----- 1283
V ++ R G R K+ + + V N+ +VT
Sbjct: 170 SEVHLIHR-----------RDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV 218
Query: 1284 --------ANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAV---VVNEYLETN 1332
N DN ++ + V IG NT +G+ NG V + +T+
Sbjct: 219 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTS 278
Query: 1333 VPGVYAGGDI 1342
+PGV+A GD+
Sbjct: 279 IPGVFAAGDV 288
>gnl|CDD|131741 TIGR02694, arsenite_ox_S, arsenite oxidase, small subunit. This
model represents the small subunit of an arsenite oxidase
complex. It is a Rieske protein and appears to rely on
the Tat (twin-arginine translocation) system to cross the
membrane. Although this enzyme could run in the direction
of arsenate reduction to arsenite in principle, the
relevant biological function is arsenite oxidation for
energy metabolism, not arsenic resistance. Homologs to
both large (TIGR02693) and small subunits that score in
the gray zone between the set trusted and noise bit score
cutoffs for the respective models are found in Aeropyrum
pernix K1 and in Sulfolobus tokodaii str. 7 [Energy
metabolism, Electron transport].
Length = 129
Score = 29.9 bits (67), Expect = 4.2
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 940 VGDLEALKFTA----YYSNADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKG 995
V ++ LK Y +A +L +G + +I A T C+H G P V
Sbjct: 9 VANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCP-VSY 67
Query: 996 SLGDGRVRCPWHGACFNIATG 1016
S + CP H + F+ G
Sbjct: 68 SADNKTFNCPCHFSVFDPEKG 88
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 31.0 bits (71), Expect = 5.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 300 VVVNEYLETNVPGVYAGGDIAYAPLH 325
V+V+ + T++ G+YA G+++Y LH
Sbjct: 356 VMVDLHGRTDLDGLYAIGEVSYTGLH 381
Score = 31.0 bits (71), Expect = 5.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 852 VVVNEYLETNVPGVYAGGDIAYAPLH 877
V+V+ + T++ G+YA G+++Y LH
Sbjct: 356 VMVDLHGRTDLDGLYAIGEVSYTGLH 381
Score = 31.0 bits (71), Expect = 5.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 1323 VVVNEYLETNVPGVYAGGDIAYAPLH 1348
V+V+ + T++ G+YA G+++Y LH
Sbjct: 356 VMVDLHGRTDLDGLYAIGEVSYTGLH 381
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 31.1 bits (71), Expect = 5.6
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 201 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 260
A V S +V G + +L +E ++ GV+ + V+ EK V
Sbjct: 140 AALLVPSGGIVDPGELT--RALAEE--------AQANGVELRLNTEVTGIEKQSDG-VFV 188
Query: 261 ANLDNG-TTIPADLVIVGIG 279
N NG T+ A VI G
Sbjct: 189 LNTSNGEETLEAKFVINAAG 208
Score = 31.1 bits (71), Expect = 5.6
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 753 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812
A V S +V G + +L +E ++ GV+ + V+ EK V
Sbjct: 140 AALLVPSGGIVDPGELT--RALAEE--------AQANGVELRLNTEVTGIEKQSDG-VFV 188
Query: 813 ANLDNG-TTIPADLVIVGIG 831
N NG T+ A VI G
Sbjct: 189 LNTSNGEETLEAKFVINAAG 208
Score = 31.1 bits (71), Expect = 5.6
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 1224 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283
A V S +V G + +L +E ++ GV+ + V+ EK V
Sbjct: 140 AALLVPSGGIVDPGELT--RALAEE--------AQANGVELRLNTEVTGIEKQSDG-VFV 188
Query: 1284 ANLDNG-TTIPADLVIVGIG 1302
N NG T+ A VI G
Sbjct: 189 LNTSNGEETLEAKFVINAAG 208
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism].
Length = 366
Score = 30.9 bits (70), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLY 72
+AK+ + D +V G GP A + R+ G KL
Sbjct: 196 VAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLI 233
Score = 30.9 bits (70), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLY 624
+AK+ + D +V G GP A + R+ G KL
Sbjct: 196 VAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLI 233
Score = 30.9 bits (70), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLY 1095
+AK+ + D +V G GP A + R+ G KL
Sbjct: 196 VAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLI 233
>gnl|CDD|234756 PRK00420, PRK00420, hypothetical protein; Validated.
Length = 112
Score = 28.8 bits (65), Expect = 6.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 511 GTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIED 549
C G PL + L DG V CP HG + + + + E
Sbjct: 23 SKHCPVCGLPLFE--LKDGEVVCPVHGKVYIVKSDEEEK 59
Score = 28.8 bits (65), Expect = 6.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 982 GTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIED 1020
C G PL + L DG V CP HG + + + + E
Sbjct: 23 SKHCPVCGLPLFE--LKDGEVVCPVHGKVYIVKSDEEEK 59
>gnl|CDD|214423 MTH00112, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 346
Score = 30.6 bits (70), Expect = 6.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 446 KLDYHGTITISPNSPSVSFLQRTQWLTSILPLIGSSFSQSTLAISP 491
+L Y TIT+ PN+ ++ RT+ + L ++ S L +SP
Sbjct: 295 RLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLSTLLLPLSP 340
>gnl|CDD|225999 COG3468, AidA, Type V secretory pathway, adhesin AidA [Cell
envelope biogenesis, outer membrane / Intracellular
trafficking and secretion].
Length = 592
Score = 30.6 bits (69), Expect = 7.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 273 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
L VG G L G ++NG V Y T V+AGG
Sbjct: 176 LQTVGGGASAGNTTLAGGFTQVNGDGTVEAGAYDYTGRQTVHAGG 220
Score = 30.6 bits (69), Expect = 7.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 825 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
L VG G L G ++NG V Y T V+AGG
Sbjct: 176 LQTVGGGASAGNTTLAGGFTQVNGDGTVEAGAYDYTGRQTVHAGG 220
Score = 30.6 bits (69), Expect = 7.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 1296 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
L VG G L G ++NG V Y T V+AGG
Sbjct: 176 LQTVGGGASAGNTTLAGGFTQVNGDGTVEAGAYDYTGRQTVHAGG 220
>gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional.
Length = 230
Score = 30.0 bits (68), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGR 213
+VV GSS IG+ A A++ VT+ R
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASR 29
Score = 30.0 bits (68), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGR 765
+VV GSS IG+ A A++ VT+ R
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASR 29
Score = 30.0 bits (68), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGR 1236
+VV GSS IG+ A A++ VT+ R
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASR 29
>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase. This model represents
the reductase which acts reduces the geranylgeranyl
group to the phytyl group in the side chain of
chlorophyll. It is unclear whether the enzyme has a
preference for acting before or after the attachment of
the side chain to chlorophyllide a by chlorophyll
synthase. This clade is restricted to plants and
cyanobacteria to separate it from the homologues which
act in the biosynthesis of bacteriochlorophyll
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 398
Score = 30.3 bits (68), Expect = 8.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 48 VVGGGPSGATCVETLRQNG 66
VVGGGP+GA+ ETL G
Sbjct: 5 VVGGGPAGASAAETLASAG 23
Score = 30.3 bits (68), Expect = 8.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 600 VVGGGPSGATCVETLRQNG 618
VVGGGP+GA+ ETL G
Sbjct: 5 VVGGGPAGASAAETLASAG 23
Score = 30.3 bits (68), Expect = 8.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 1071 VVGGGPSGATCVETLRQNG 1089
VVGGGP+GA+ ETL G
Sbjct: 5 VVGGGPAGASAAETLASAG 23
>gnl|CDD|237173 PRK12684, PRK12684, transcriptional regulator CysB-like protein;
Reviewed.
Length = 313
Score = 30.3 bits (69), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 542 IATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKK 582
IAT I D+ + SLPCY Q + VVV L+ K
Sbjct: 147 IATEAIADYKELVSLPCY----QWNHCVVVPPDHPLLERKP 183
Score = 30.3 bits (69), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 1013 IATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKK 1053
IAT I D+ + SLPCY Q + VVV L+ K
Sbjct: 147 IATEAIADYKELVSLPCY----QWNHCVVVPPDHPLLERKP 183
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 30.3 bits (69), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 176 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 216
AP ++VVV+GS G+ AA + V VV + A+
Sbjct: 10 APGWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50
Score = 30.3 bits (69), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 728 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768
AP ++VVV+GS G+ AA + V VV + A+
Sbjct: 10 APGWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50
Score = 30.3 bits (69), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 1199 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 1239
AP ++VVV+GS G+ AA + V VV + A+
Sbjct: 10 APGWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 30.3 bits (69), Expect = 10.0
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 307 ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 354
T V G++A GD+ H F S G + GRIAA V
Sbjct: 392 MTTVEGLFAAGDVVGGSPHKF-----SSG----SFAEGRIAAKAAVRY 430
Score = 30.3 bits (69), Expect = 10.0
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 859 ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906
T V G++A GD+ H F S G + GRIAA V
Sbjct: 392 MTTVEGLFAAGDVVGGSPHKF-----SSG----SFAEGRIAAKAAVRY 430
Score = 30.3 bits (69), Expect = 10.0
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 1330 ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377
T V G++A GD+ H F S G + GRIAA V
Sbjct: 392 MTTVEGLFAAGDVVGGSPHKF-----SSG----SFAEGRIAAKAAVRY 430
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 74,309,781
Number of extensions: 7536220
Number of successful extensions: 9051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8597
Number of HSP's successfully gapped: 414
Length of query: 1466
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1357
Effective length of database: 6,103,016
Effective search space: 8281792712
Effective search space used: 8281792712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.7 bits)