RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2951
(1466 letters)
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 343 bits (883), Expect = e-106
Identities = 113/387 (29%), Positives = 176/387 (45%), Gaps = 13/387 (3%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--- 91
MA + ++VG G GA LRQNGF G++ I E +PY+R LSK+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAR 60
Query: 92 DIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSS 150
+ + I +R +F++D + + G +++S D +KL DG++I++ K+ ATG
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 151 PRTISQADG-VNKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEAAAFCASKVKSV 208
PR +S + V +RT EDA+ + + + N VVIG +IG+EAAA +V
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 209 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 268
T++ G+ + E + GV A + E + VT + +G+
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSV 237
Query: 269 IPADLVIVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 327
IPAD+VIVGIG V L G NG V V+E+ T++ VYA GD A
Sbjct: 238 IPADIVIVGIGIVPCVGALISAGASGGNG---VDVDEFCRTSLTDVYAIGDCAAHANDFA 294
Query: 328 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI 387
+ Q A AA ++ P+FW+ + + + G + GH +
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVL 354
Query: 388 VGDLEALKFTAYYSNADKVLAILTVGM 414
GD F+ Y KV+A+ V M
Sbjct: 355 RGDPATRSFSVVYLKGGKVVALDCVNM 381
Score = 343 bits (883), Expect = e-106
Identities = 113/387 (29%), Positives = 176/387 (45%), Gaps = 13/387 (3%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--- 643
MA + ++VG G GA LRQNGF G++ I E +PY+R LSK+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAR 60
Query: 644 DIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSS 702
+ + I +R +F++D + + G +++S D +KL DG++I++ K+ ATG
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 703 PRTISQADG-VNKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEAAAFCASKVKSV 760
PR +S + V +RT EDA+ + + + N VVIG +IG+EAAA +V
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 820
T++ G+ + E + GV A + E + VT + +G+
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSV 237
Query: 821 IPADLVIVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 879
IPAD+VIVGIG V L G NG V V+E+ T++ VYA GD A
Sbjct: 238 IPADIVIVGIGIVPCVGALISAGASGGNG---VDVDEFCRTSLTDVYAIGDCAAHANDFA 294
Query: 880 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI 939
+ Q A AA ++ P+FW+ + + + G + GH +
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVL 354
Query: 940 VGDLEALKFTAYYSNADKVLAILTVGM 966
GD F+ Y KV+A+ V M
Sbjct: 355 RGDPATRSFSVVYLKGGKVVALDCVNM 381
Score = 343 bits (883), Expect = e-106
Identities = 113/387 (29%), Positives = 176/387 (45%), Gaps = 13/387 (3%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--- 1114
MA + ++VG G GA LRQNGF G++ I E +PY+R LSK+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAR 60
Query: 1115 DIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSS 1173
+ + I +R +F++D + + G +++S D +KL DG++I++ K+ ATG
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 1174 PRTISQADG-VNKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEAAAFCASKVKSV 1231
PR +S + V +RT EDA+ + + + N VVIG +IG+EAAA +V
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 1232 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 1291
T++ G+ + E + GV A + E + VT + +G+
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSV 237
Query: 1292 IPADLVIVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350
IPAD+VIVGIG V L G NG V V+E+ T++ VYA GD A
Sbjct: 238 IPADIVIVGIGIVPCVGALISAGASGGNG---VDVDEFCRTSLTDVYAIGDCAAHANDFA 294
Query: 1351 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI 1410
+ Q A AA ++ P+FW+ + + + G + GH +
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVL 354
Query: 1411 VGDLEALKFTAYYSNADKVLAILTVGM 1437
GD F+ Y KV+A+ V M
Sbjct: 355 RGDPATRSFSVVYLKGGKVVALDCVNM 381
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 343 bits (883), Expect = e-106
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)
Query: 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 100
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI----S 155
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR +
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAIN--RDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG 122
Query: 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 123 AVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 182
Query: 216 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLV 274
+ V L GV V FE + VTA ++GT +PADLV
Sbjct: 183 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 242
Query: 275 IVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333
I GIG + N G+++ NG +V+NE+++T+ P + A GD A Y++
Sbjct: 243 IAGIGLIPNCELASAAGLQVDNG---IVINEHMQTSDPLIMAVGDCARFH-SQLYDRWVR 298
Query: 334 IGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEA 393
I A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 299 IESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQ 358
Query: 394 LKFTAYYSNADKVLAILTVGM 414
F+ +Y D+VLA+ TV
Sbjct: 359 PDFSVFYLQGDRVLAVDTVNR 379
Score = 343 bits (883), Expect = e-106
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)
Query: 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 652
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI----S 707
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR +
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAIN--RDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG 122
Query: 708 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 123 AVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 182
Query: 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLV 826
+ V L GV V FE + VTA ++GT +PADLV
Sbjct: 183 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 242
Query: 827 IVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885
I GIG + N G+++ NG +V+NE+++T+ P + A GD A Y++
Sbjct: 243 IAGIGLIPNCELASAAGLQVDNG---IVINEHMQTSDPLIMAVGDCARFH-SQLYDRWVR 298
Query: 886 IGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEA 945
I A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 299 IESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQ 358
Query: 946 LKFTAYYSNADKVLAILTVGM 966
F+ +Y D+VLA+ TV
Sbjct: 359 PDFSVFYLQGDRVLAVDTVNR 379
Score = 343 bits (883), Expect = e-106
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)
Query: 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 1123
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI----S 1178
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR +
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAIN--RDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG 122
Query: 1179 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 123 AVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 182
Query: 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLV 1297
+ V L GV V FE + VTA ++GT +PADLV
Sbjct: 183 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 242
Query: 1298 IVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356
I GIG + N G+++ NG +V+NE+++T+ P + A GD A Y++
Sbjct: 243 IAGIGLIPNCELASAAGLQVDNG---IVINEHMQTSDPLIMAVGDCARFH-SQLYDRWVR 298
Query: 1357 IGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEA 1416
I A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 299 IESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQ 358
Query: 1417 LKFTAYYSNADKVLAILTVGM 1437
F+ +Y D+VLA+ TV
Sbjct: 359 PDFSVFYLQGDRVLAVDTVNR 379
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 338 bits (870), Expect = e-105
Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 14/377 (3%)
Query: 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 100
DT ++ G G +G +LRQ + G++ I DE LPY R LSK +S++
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMF 61
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
R E+F++D I +I +++S D E +K+ L GT+I++ + LATG+ R + +
Sbjct: 62 RPEKFFQDQAIELI-SDRMVSIDRE--GRKLLLASGTAIEYGHLVLATGARNRMLDVPNA 118
Query: 160 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ V YLRT++++ + + + +VVVIG+ FIG+E AA +K V VV
Sbjct: 119 SLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ E+ G++ + E + VT L +G T+P DLV+VG+
Sbjct: 179 ARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGV 237
Query: 279 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 337
G + N G+ G ++V++ L T+ P + A GD A + + +
Sbjct: 238 GVIPNVEIAAAAGLPTAAG---IIVDQQLLTSDPHISAIGDCALFE-SVRFGETMRVESV 293
Query: 338 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 397
Q A R A + P+FW+ + G AG QV I G + F+
Sbjct: 294 QNATDQARCVAARLTGDAKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFS 353
Query: 398 AYYSNADKVLAILTVGM 414
A+ A K++ I +V
Sbjct: 354 AFCYKAGKLIGIESVNR 370
Score = 338 bits (870), Expect = e-105
Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 14/377 (3%)
Query: 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 652
DT ++ G G +G +LRQ + G++ I DE LPY R LSK +S++
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMF 61
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 711
R E+F++D I +I +++S D E +K+ L GT+I++ + LATG+ R + +
Sbjct: 62 RPEKFFQDQAIELI-SDRMVSIDRE--GRKLLLASGTAIEYGHLVLATGARNRMLDVPNA 118
Query: 712 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
+ V YLRT++++ + + + +VVVIG+ FIG+E AA +K V VV
Sbjct: 119 SLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ E+ G++ + E + VT L +G T+P DLV+VG+
Sbjct: 179 ARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGV 237
Query: 831 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889
G + N G+ G ++V++ L T+ P + A GD A + + +
Sbjct: 238 GVIPNVEIAAAAGLPTAAG---IIVDQQLLTSDPHISAIGDCALFE-SVRFGETMRVESV 293
Query: 890 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 949
Q A R A + P+FW+ + G AG QV I G + F+
Sbjct: 294 QNATDQARCVAARLTGDAKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFS 353
Query: 950 AYYSNADKVLAILTVGM 966
A+ A K++ I +V
Sbjct: 354 AFCYKAGKLIGIESVNR 370
Score = 338 bits (870), Expect = e-105
Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 14/377 (3%)
Query: 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 1123
DT ++ G G +G +LRQ + G++ I DE LPY R LSK +S++
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMF 61
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 1182
R E+F++D I +I +++S D E +K+ L GT+I++ + LATG+ R + +
Sbjct: 62 RPEKFFQDQAIELI-SDRMVSIDRE--GRKLLLASGTAIEYGHLVLATGARNRMLDVPNA 118
Query: 1183 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
+ V YLRT++++ + + + +VVVIG+ FIG+E AA +K V VV
Sbjct: 119 SLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ E+ G++ + E + VT L +G T+P DLV+VG+
Sbjct: 179 ARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGV 237
Query: 1302 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360
G + N G+ G ++V++ L T+ P + A GD A + + +
Sbjct: 238 GVIPNVEIAAAAGLPTAAG---IIVDQQLLTSDPHISAIGDCALFE-SVRFGETMRVESV 293
Query: 1361 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 1420
Q A R A + P+FW+ + G AG QV I G + F+
Sbjct: 294 QNATDQARCVAARLTGDAKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFS 353
Query: 1421 AYYSNADKVLAILTVGM 1437
A+ A K++ I +V
Sbjct: 354 AFCYKAGKLIGIESVNR 370
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 333 bits (856), Expect = e-102
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 14/377 (3%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 100
++G G G T + LR GF G++ I DE LPYDR LSK +L
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL 61
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
++Y + I ++ G ++ + D + + I L DGT++ I +ATGS RT++
Sbjct: 62 AEADWYGEARIDMLTGPEVTALDVQ--TRTISLDDGTTLSADAIVIATGSRARTMALPGS 119
Query: 160 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ V LRT D + T + ++++G IG E A SVT++ G
Sbjct: 120 QLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
LG+ +G + L GV+ + V F + + +G + AD ++ +
Sbjct: 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ--LEQVMASDGRSFVADSALICV 237
Query: 279 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 337
G G+ G V+V+ T GV+A GD+A PL S+ Y
Sbjct: 238 GAEPADQLARQAGLACDRG---VIVDHCGATLAKGVFAVGDVASWPLR--AGGRRSLETY 292
Query: 338 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 397
AQ A ++ K S +P WT + G + AG G G +
Sbjct: 293 MNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAAL 352
Query: 398 AYYSNADKVLAILTVGM 414
+ ++ A++ V
Sbjct: 353 LFRLQERRIQAVVAVDA 369
Score = 333 bits (856), Expect = e-102
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 14/377 (3%)
Query: 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 652
++G G G T + LR GF G++ I DE LPYDR LSK +L
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL 61
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 711
++Y + I ++ G ++ + D + + I L DGT++ I +ATGS RT++
Sbjct: 62 AEADWYGEARIDMLTGPEVTALDVQ--TRTISLDDGTTLSADAIVIATGSRARTMALPGS 119
Query: 712 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
+ V LRT D + T + ++++G IG E A SVT++ G
Sbjct: 120 QLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
LG+ +G + L GV+ + V F + + +G + AD ++ +
Sbjct: 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ--LEQVMASDGRSFVADSALICV 237
Query: 831 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889
G G+ G V+V+ T GV+A GD+A PL S+ Y
Sbjct: 238 GAEPADQLARQAGLACDRG---VIVDHCGATLAKGVFAVGDVASWPLR--AGGRRSLETY 292
Query: 890 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 949
AQ A ++ K S +P WT + G + AG G G +
Sbjct: 293 MNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAAL 352
Query: 950 AYYSNADKVLAILTVGM 966
+ ++ A++ V
Sbjct: 353 LFRLQERRIQAVVAVDA 369
Score = 333 bits (856), Expect = e-102
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 14/377 (3%)
Query: 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 1123
++G G G T + LR GF G++ I DE LPYDR LSK +L
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL 61
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 1182
++Y + I ++ G ++ + D + + I L DGT++ I +ATGS RT++
Sbjct: 62 AEADWYGEARIDMLTGPEVTALDVQ--TRTISLDDGTTLSADAIVIATGSRARTMALPGS 119
Query: 1183 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
+ V LRT D + T + ++++G IG E A SVT++ G
Sbjct: 120 QLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
LG+ +G + L GV+ + V F + + +G + AD ++ +
Sbjct: 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ--LEQVMASDGRSFVADSALICV 237
Query: 1302 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360
G G+ G V+V+ T GV+A GD+A PL S+ Y
Sbjct: 238 GAEPADQLARQAGLACDRG---VIVDHCGATLAKGVFAVGDVASWPLR--AGGRRSLETY 292
Query: 1361 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 1420
AQ A ++ K S +P WT + G + AG G G +
Sbjct: 293 MNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAAL 352
Query: 1421 AYYSNADKVLAILTVGM 1437
+ ++ A++ V
Sbjct: 353 LFRLQERRIQAVVAVDA 369
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 309 bits (795), Expect = 2e-94
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 22/379 (5%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 100
K +V+G G + + V LRQ G+ G + + DE PYDR LSK A+ I L
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 66
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
+ + ++ + G S D + L DG ++ + + LATG++PR + G
Sbjct: 67 ---DCKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQG 121
Query: 160 VNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
V LRT+EDA I + P+S ++++G IG+E AA + V++V
Sbjct: 122 ATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ + + + + ++GV + +V+ LD+GT I AD+V+VGI
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVGI 235
Query: 279 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 337
G + N G+ +G + V+ Y T P VYA GD+ + + I +
Sbjct: 236 GVLANDALARAAGLACDDG---IFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETW 291
Query: 338 QLAQYHGRIAALNMV-EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALK 395
AQ G A ++V + +P++W+ + + AG A+G ++ L+A K
Sbjct: 292 SNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPK 351
Query: 396 FTAYYSNADKVLAILTVGM 414
FT +++ V
Sbjct: 352 FTLIELQKGRIVGATCVNN 370
Score = 309 bits (795), Expect = 2e-94
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 22/379 (5%)
Query: 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 652
K +V+G G + + V LRQ G+ G + + DE PYDR LSK A+ I L
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 66
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 711
+ + ++ + G S D + L DG ++ + + LATG++PR + G
Sbjct: 67 ---DCKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQG 121
Query: 712 VNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
V LRT+EDA I + P+S ++++G IG+E AA + V++V
Sbjct: 122 ATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ + + + + ++GV + +V+ LD+GT I AD+V+VGI
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVGI 235
Query: 831 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889
G + N G+ +G + V+ Y T P VYA GD+ + + I +
Sbjct: 236 GVLANDALARAAGLACDDG---IFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETW 291
Query: 890 QLAQYHGRIAALNMV-EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALK 947
AQ G A ++V + +P++W+ + + AG A+G ++ L+A K
Sbjct: 292 SNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPK 351
Query: 948 FTAYYSNADKVLAILTVGM 966
FT +++ V
Sbjct: 352 FTLIELQKGRIVGATCVNN 370
Score = 309 bits (795), Expect = 2e-94
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 22/379 (5%)
Query: 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 1123
K +V+G G + + V LRQ G+ G + + DE PYDR LSK A+ I L
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 66
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 1182
+ + ++ + G S D + L DG ++ + + LATG++PR + G
Sbjct: 67 ---DCKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQG 121
Query: 1183 VNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
V LRT+EDA I + P+S ++++G IG+E AA + V++V
Sbjct: 122 ATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ + + + + ++GV + +V+ LD+GT I AD+V+VGI
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVGI 235
Query: 1302 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360
G + N G+ +G + V+ Y T P VYA GD+ + + I +
Sbjct: 236 GVLANDALARAAGLACDDG---IFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETW 291
Query: 1361 QLAQYHGRIAALNMV-EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALK 1418
AQ G A ++V + +P++W+ + + AG A+G ++ L+A K
Sbjct: 292 SNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPK 351
Query: 1419 FTAYYSNADKVLAILTVGM 1437
FT +++ V
Sbjct: 352 FTLIELQKGRIVGATCVNN 370
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET:
FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 293 bits (752), Expect = 2e-87
Identities = 89/463 (19%), Positives = 165/463 (35%), Gaps = 55/463 (11%)
Query: 586 PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-- 643
+ + + + F+++GGG + ++R ++ ++++ LPY R LSK+L
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 644 ---------------DIKADSILLRTEEFY---------KDNDIHVIKGKKIIS-DSELN 678
+ K SI + FY ++ + V+ GKK++ D
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR-- 119
Query: 679 EKKIKLQDGTSIDFTKIYLATGSSPRTISQ-----ADGVNKVFYLRTVEDANNIAPHITP 733
+ +KL DG+ I + K +ATG +PR++S A+ ++ R + D ++
Sbjct: 120 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 734 ESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGRGAVPFQESLGKEVGERITKLFESK 789
++ +IG F+G E A K ++ V + + L + + + +
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL-NG 848
GVK + A V S + L +G + D ++ +G N G+E+ +
Sbjct: 240 GVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297
Query: 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS---IGHYQLAQYHGRIAALNMVE 905
VN L+ ++ GD A FY+ + H+ A GR+A NM
Sbjct: 298 FGGFRVNAELQAR-SNIWVAGDAA-----CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
Query: 906 KKTSLSTIPFFWTMLF-GVGFRFAGYAAGHTQVDIVGDLEALKFTA-YYSNADKVLAILT 963
FW+ L VG+ G V + +
Sbjct: 352 AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSE 411
Query: 964 VGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGS---LGDGRVR 1003
+ A++ + G KG L D V
Sbjct: 412 SETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVV 454
Score = 293 bits (751), Expect = 2e-87
Identities = 86/454 (18%), Positives = 164/454 (36%), Gaps = 54/454 (11%)
Query: 34 PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-- 91
+ + + + F+++GGG + ++R ++ ++++ LPY R LSK+L
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 92 ---------------DIKADSILLRTEEFY---------KDNDIHVIKGKKIIS-DSELN 126
+ K SI + FY ++ + V+ GKK++ D
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR-- 119
Query: 127 EKKIKLQDGTSIDFTKIYLATGSSPRTISQ-----ADGVNKVFYLRTVEDANNIAPHITP 181
+ +KL DG+ I + K +ATG +PR++S A+ ++ R + D ++
Sbjct: 120 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 182 ESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGRGAVPFQESLGKEVGERITKLFESK 237
++ +IG F+G E A K ++ V + + L + + + +
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 238 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL-NG 296
GVK + A V S + L +G + D ++ +G N G+E+ +
Sbjct: 240 GVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297
Query: 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS---IGHYQLAQYHGRIAALNMVE 353
VN L+ ++ GD A FY+ + H+ A GR+A NM
Sbjct: 298 FGGFRVNAELQAR-SNIWVAGDAA-----CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
Query: 354 KKTSLSTIPFFWTMLF-GVGFRFAGYAAGHTQVDIVGDLEALKFT---AYYSNADKVLAI 409
FW+ L VG+ G V + A + + +
Sbjct: 352 AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSE 411
Query: 410 LTVGMDPLAAQFAEQVLEFPYSSLPHSHRCLGVV 443
+ P + + GV+
Sbjct: 412 SETESEASEITIPPSTPAVPQAPVQGEDYGKGVI 445
Score = 292 bits (749), Expect = 4e-87
Identities = 84/447 (18%), Positives = 161/447 (36%), Gaps = 51/447 (11%)
Query: 1057 PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-- 1114
+ + + + F+++GGG + ++R ++ ++++ LPY R LSK+L
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 1115 ---------------DIKADSILLRTEEFY---------KDNDIHVIKGKKIIS-DSELN 1149
+ K SI + FY ++ + V+ GKK++ D
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR-- 119
Query: 1150 EKKIKLQDGTSIDFTKIYLATGSSPRTISQ-----ADGVNKVFYLRTVEDANNIAPHITP 1204
+ +KL DG+ I + K +ATG +PR++S A+ ++ R + D ++
Sbjct: 120 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 1205 ESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGRGAVPFQESLGKEVGERITKLFESK 1260
++ +IG F+G E A K ++ V + + L + + + +
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 1261 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL-NG 1319
GVK + A V S + L +G + D ++ +G N G+E+ +
Sbjct: 240 GVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297
Query: 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS---IGHYQLAQYHGRIAALNMVE 1376
VN L+ ++ GD A FY+ + H+ A GR+A NM
Sbjct: 298 FGGFRVNAELQAR-SNIWVAGDAA-----CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
Query: 1377 KKTSLSTIPFFWTMLF-GVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 1435
FW+ L VG+ G V + + I +
Sbjct: 352 AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSE 411
Query: 1436 GMDPLAAQFAERIKMQKYIQKDQIENN 1462
A + + ++
Sbjct: 412 SETESEASEITIPPSTPAVPQAPVQGE 438
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 243 bits (622), Expect = 3e-71
Identities = 86/399 (21%), Positives = 160/399 (40%), Gaps = 33/399 (8%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D 1115
M +++G GP+G + + G + I E +LPY R +L++ + +
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKN 58
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSP 1174
D IL++ ++Y+ N+I VI + S D K + L+ G I + K+ +A+GS
Sbjct: 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPN--NKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 1175 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV 1234
I + +++F L + +DA I + +IG +G+E A ++
Sbjct: 117 NKI-KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIG 175
Query: 1235 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294
P + L ++ G + + G+K +N G I +
Sbjct: 176 IILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRS 220
Query: 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 1354
VI +G N +++ + ++VN+++ET++ +YA GD+A FY KN
Sbjct: 221 SCVITAVGVKPNLDFIKDTEIASKR--GILVNDHMETSIKDIYACGDVA-----EFYGKN 273
Query: 1355 ASIGHYQLAQYHGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGD 1413
G +A G +A LN + S S IP + G+ G + +
Sbjct: 274 --PGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS 331
Query: 1414 LEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQK 1452
+ K+ +K+ A +G L + + I K
Sbjct: 332 TQEDKYIVCMLKENKIDAAAVIGDVSLGTKLKKAIDSSK 370
Score = 242 bits (621), Expect = 3e-71
Identities = 83/383 (21%), Positives = 155/383 (40%), Gaps = 33/383 (8%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D 92
M +++G GP+G + + G + I E +LPY R +L++ + +
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKN 58
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSP 151
D IL++ ++Y+ N+I VI + S D K + L+ G I + K+ +A+GS
Sbjct: 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPN--NKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 152 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV 211
I + +++F L + +DA I + +IG +G+E A ++
Sbjct: 117 NKI-KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIG 175
Query: 212 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 271
P + L ++ G + + G+K +N G I +
Sbjct: 176 IILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRS 220
Query: 272 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 331
VI +G N +++ + ++VN+++ET++ +YA GD+A FY KN
Sbjct: 221 SCVITAVGVKPNLDFIKDTEIASKR--GILVNDHMETSIKDIYACGDVA-----EFYGKN 273
Query: 332 ASIGHYQLAQYHGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGD 390
G +A G +A LN + S S IP + G+ G + +
Sbjct: 274 --PGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS 331
Query: 391 LEALKFTAYYSNADKVLAILTVG 413
+ K+ +K+ A +G
Sbjct: 332 TQEDKYIVCMLKENKIDAAAVIG 354
Score = 242 bits (621), Expect = 3e-71
Identities = 83/383 (21%), Positives = 155/383 (40%), Gaps = 33/383 (8%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D 644
M +++G GP+G + + G + I E +LPY R +L++ + +
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKN 58
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSP 703
D IL++ ++Y+ N+I VI + S D K + L+ G I + K+ +A+GS
Sbjct: 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPN--NKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 704 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV 763
I + +++F L + +DA I + +IG +G+E A ++
Sbjct: 117 NKI-KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIG 175
Query: 764 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
P + L ++ G + + G+K +N G I +
Sbjct: 176 IILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRS 220
Query: 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 883
VI +G N +++ + ++VN+++ET++ +YA GD+A FY KN
Sbjct: 221 SCVITAVGVKPNLDFIKDTEIASKR--GILVNDHMETSIKDIYACGDVA-----EFYGKN 273
Query: 884 ASIGHYQLAQYHGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGD 942
G +A G +A LN + S S IP + G+ G + +
Sbjct: 274 --PGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS 331
Query: 943 LEALKFTAYYSNADKVLAILTVG 965
+ K+ +K+ A +G
Sbjct: 332 TQEDKYIVCMLKENKIDAAAVIG 354
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 192 bits (490), Expect = 9e-54
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 99
+ +++G G +G R+ L IT ++ Y + LS + AD +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 100 LRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI--- 154
+ + + ++ ++ D ++I + + + + + LA G+ P +
Sbjct: 63 MAEPGAMAEQLNARILTHTRVTGIDPG--HQRIWIGEEE-VRYRDLVLAWGAEPIRVPVE 119
Query: 155 -SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 213
D + + + +ED + V+++G+ IG E A +S + VV
Sbjct: 120 GDAQDAL---YPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
Query: 214 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273
L + + E GV+F + ++S +K + A+L +G IP DL
Sbjct: 177 CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDGEVIPCDL 234
Query: 274 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
V+ +G T G+ +N +VV+ L T+ +YA GD A
Sbjct: 235 VVSAVGLRPRTELAFAAGLAVNR--GIVVDRSLRTSHANIYALGDCA 279
Score = 192 bits (490), Expect = 9e-54
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 651
+ +++G G +G R+ L IT ++ Y + LS + AD +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 652 LRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI--- 706
+ + + ++ ++ D ++I + + + + + LA G+ P +
Sbjct: 63 MAEPGAMAEQLNARILTHTRVTGIDPG--HQRIWIGEEE-VRYRDLVLAWGAEPIRVPVE 119
Query: 707 -SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 765
D + + + +ED + V+++G+ IG E A +S + VV
Sbjct: 120 GDAQDAL---YPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
Query: 766 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 825
L + + E GV+F + ++S +K + A+L +G IP DL
Sbjct: 177 CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDGEVIPCDL 234
Query: 826 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
V+ +G T G+ +N +VV+ L T+ +YA GD A
Sbjct: 235 VVSAVGLRPRTELAFAAGLAVNR--GIVVDRSLRTSHANIYALGDCA 279
Score = 192 bits (490), Expect = 9e-54
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 1122
+ +++G G +G R+ L IT ++ Y + LS + AD +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 1123 LRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI--- 1177
+ + + ++ ++ D ++I + + + + + LA G+ P +
Sbjct: 63 MAEPGAMAEQLNARILTHTRVTGIDPG--HQRIWIGEEE-VRYRDLVLAWGAEPIRVPVE 119
Query: 1178 -SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 1236
D + + + +ED + V+++G+ IG E A +S + VV
Sbjct: 120 GDAQDAL---YPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
Query: 1237 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 1296
L + + E GV+F + ++S +K + A+L +G IP DL
Sbjct: 177 CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDGEVIPCDL 234
Query: 1297 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
V+ +G T G+ +N +VV+ L T+ +YA GD A
Sbjct: 235 VVSAVGLRPRTELAFAAGLAVNR--GIVVDRSLRTSHANIYALGDCA 279
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 188 bits (479), Expect = 2e-52
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 28/319 (8%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 99
+ ++VG GP G + L Q ++ I E Y + LS + I + +
Sbjct: 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF 63
Query: 100 LRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 158
+ ++Y+ I + ++ D K + + G + + + LATG+ R Q
Sbjct: 64 PYSLDWYRKRGIEIRLAEEAKLIDRG--RKVVITEKGE-VPYDTLVLATGARAR-EPQIK 119
Query: 159 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 230
Query: 279 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 338
G V N + G+ + +++++ T+ VYA GD A + G +
Sbjct: 231 GIVPNVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCA---EY----SGIIAGTAK 281
Query: 339 LAQYHGRIAALNMVEKKTS 357
A R+ A + +
Sbjct: 282 AAMEQARVLADILKGEPRR 300
Score = 188 bits (479), Expect = 2e-52
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 28/319 (8%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 651
+ ++VG GP G + L Q ++ I E Y + LS + I + +
Sbjct: 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF 63
Query: 652 LRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 710
+ ++Y+ I + ++ D K + + G + + + LATG+ R Q
Sbjct: 64 PYSLDWYRKRGIEIRLAEEAKLIDRG--RKVVITEKGE-VPYDTLVLATGARAR-EPQIK 119
Query: 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 230
Query: 831 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890
G V N + G+ + +++++ T+ VYA GD A + G +
Sbjct: 231 GIVPNVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCA---EY----SGIIAGTAK 281
Query: 891 LAQYHGRIAALNMVEKKTS 909
A R+ A + +
Sbjct: 282 AAMEQARVLADILKGEPRR 300
Score = 188 bits (479), Expect = 2e-52
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 28/319 (8%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 1122
+ ++VG GP G + L Q ++ I E Y + LS + I + +
Sbjct: 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF 63
Query: 1123 LRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 1181
+ ++Y+ I + ++ D K + + G + + + LATG+ R Q
Sbjct: 64 PYSLDWYRKRGIEIRLAEEAKLIDRG--RKVVITEKGE-VPYDTLVLATGARAR-EPQIK 119
Query: 1182 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 230
Query: 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 1361
G V N + G+ + +++++ T+ VYA GD A + G +
Sbjct: 231 GIVPNVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCA---EY----SGIIAGTAK 281
Query: 1362 LAQYHGRIAALNMVEKKTS 1380
A R+ A + +
Sbjct: 282 AAMEQARVLADILKGEPRR 300
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 156 bits (397), Expect = 7e-41
Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 75/349 (21%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 85
+++G +G + R+ + L +
Sbjct: 5 IVIIGASFAGISAAIASRKK----------YPQAEISLIDKQATVGYLSGGLSAYFNHTI 54
Query: 86 KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQD---GTSIDFT 141
+ TEE + I ++ +++++ D E + I +
Sbjct: 55 N-------ELHEARYITEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKEEQQWYSYD 105
Query: 142 KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA- 198
K+ LATG+S + I + + + + A P + V VIG+ IGMEA
Sbjct: 106 KLILATGASQFSTQIRGSQTEK-LLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAID 164
Query: 199 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 258
K K+V V + KE+ + K E + V F + V E+ V
Sbjct: 165 FLVKMK-KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIV 223
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
+ I D I + YLD ++ N + + V+ YL+T+VP V+A GD
Sbjct: 224 L---ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
Query: 319 IA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
YAPL + A G + A N+ EK
Sbjct: 280 CISVMNEPVAETFYAPL-------VN-----NAVRTGLVVANNLEEKTH 316
Score = 156 bits (397), Expect = 7e-41
Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 75/349 (21%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 637
+++G +G + R+ + L +
Sbjct: 5 IVIIGASFAGISAAIASRKK----------YPQAEISLIDKQATVGYLSGGLSAYFNHTI 54
Query: 638 KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQD---GTSIDFT 693
+ TEE + I ++ +++++ D E + I +
Sbjct: 55 N-------ELHEARYITEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKEEQQWYSYD 105
Query: 694 KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA- 750
K+ LATG+S + I + + + + A P + V VIG+ IGMEA
Sbjct: 106 KLILATGASQFSTQIRGSQTEK-LLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAID 164
Query: 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
K K+V V + KE+ + K E + V F + V E+ V
Sbjct: 165 FLVKMK-KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIV 223
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
+ I D I + YLD ++ N + + V+ YL+T+VP V+A GD
Sbjct: 224 L---ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
Query: 871 IA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
YAPL + A G + A N+ EK
Sbjct: 280 CISVMNEPVAETFYAPL-------VN-----NAVRTGLVVANNLEEKTH 316
Score = 156 bits (397), Expect = 7e-41
Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 75/349 (21%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 1108
+++G +G + R+ + L +
Sbjct: 5 IVIIGASFAGISAAIASRKK----------YPQAEISLIDKQATVGYLSGGLSAYFNHTI 54
Query: 1109 KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQD---GTSIDFT 1164
+ TEE + I ++ +++++ D E + I +
Sbjct: 55 N-------ELHEARYITEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKEEQQWYSYD 105
Query: 1165 KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA- 1221
K+ LATG+S + I + + + + A P + V VIG+ IGMEA
Sbjct: 106 KLILATGASQFSTQIRGSQTEK-LLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAID 164
Query: 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
K K+V V + KE+ + K E + V F + V E+ V
Sbjct: 165 FLVKMK-KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIV 223
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
+ I D I + YLD ++ N + + V+ YL+T+VP V+A GD
Sbjct: 224 L---ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
Query: 1342 IA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
YAPL + A G + A N+ EK
Sbjct: 280 CISVMNEPVAETFYAPL-------VN-----NAVRTGLVVANNLEEKTH 316
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 154 bits (391), Expect = 6e-40
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 86
+V+G G ++ D +PY V
Sbjct: 7 VVIGAVALGPKAACRFKRL----------DPEAHVTMIDQASRISYGGCGIPYYVSGEVS 56
Query: 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 141
+ L +++ E F + D+ + + + D ++ L+ G
Sbjct: 57 NIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLRTGERRTLKY 114
Query: 142 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 196
K+ LA GS + D V + +++A + I+ V++G FIG+E
Sbjct: 115 DKLVLALGSKANRPPVEGMDLAG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLE 173
Query: 197 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 255
A + TVV K + + + E V V E +
Sbjct: 174 MAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE--GE 231
Query: 256 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 315
N A + + T+ ADLVI+ G NT G+EL+ + A++V+ + T+ P ++A
Sbjct: 232 NGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFA 291
Query: 316 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GGD + PL S +A GR+ N+ +
Sbjct: 292 GGDCVTIPNLVTGKPGFFPL-------GS-----MANRQGRVIGTNLADGDA 331
Score = 154 bits (391), Expect = 6e-40
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 638
+V+G G ++ D +PY V
Sbjct: 7 VVIGAVALGPKAACRFKRL----------DPEAHVTMIDQASRISYGGCGIPYYVSGEVS 56
Query: 639 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 693
+ L +++ E F + D+ + + + D ++ L+ G
Sbjct: 57 NIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLRTGERRTLKY 114
Query: 694 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 748
K+ LA GS + D V + +++A + I+ V++G FIG+E
Sbjct: 115 DKLVLALGSKANRPPVEGMDLAG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLE 173
Query: 749 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807
A + TVV K + + + E V V E +
Sbjct: 174 MAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE--GE 231
Query: 808 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 867
N A + + T+ ADLVI+ G NT G+EL+ + A++V+ + T+ P ++A
Sbjct: 232 NGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFA 291
Query: 868 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GGD + PL S +A GR+ N+ +
Sbjct: 292 GGDCVTIPNLVTGKPGFFPL-------GS-----MANRQGRVIGTNLADGDA 331
Score = 154 bits (391), Expect = 6e-40
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 1109
+V+G G ++ D +PY V
Sbjct: 7 VVIGAVALGPKAACRFKRL----------DPEAHVTMIDQASRISYGGCGIPYYVSGEVS 56
Query: 1110 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 1164
+ L +++ E F + D+ + + + D ++ L+ G
Sbjct: 57 NIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLRTGERRTLKY 114
Query: 1165 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 1219
K+ LA GS + D V + +++A + I+ V++G FIG+E
Sbjct: 115 DKLVLALGSKANRPPVEGMDLAG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLE 173
Query: 1220 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278
A + TVV K + + + E V V E +
Sbjct: 174 MAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE--GE 231
Query: 1279 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 1338
N A + + T+ ADLVI+ G NT G+EL+ + A++V+ + T+ P ++A
Sbjct: 232 NGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFA 291
Query: 1339 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GGD + PL S +A GR+ N+ +
Sbjct: 292 GGDCVTIPNLVTGKPGFFPL-------GS-----MANRQGRVIGTNLADGDA 331
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 156 bits (396), Expect = 1e-39
Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 58/344 (16%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRV 85
+VVGG GA+ LR+ E LPY +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----------SEEDEIIMVERGEYISFANCGLPYYIGGVI 88
Query: 86 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 140
+ +L++T E K ++ + +++ + E EK I + + +
Sbjct: 89 T-------ERQKLLVQTVERMSKRFNLDIRVLSEVVKINKE--EKTITIKNVTTNETYNE 139
Query: 141 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 194
+ L+ G+ P I + +F LR V D + I +I + + VIG FIG
Sbjct: 140 AYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIG 199
Query: 195 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 253
+E ++ VT+V + E+ + + ++ V+ V + V + E+N
Sbjct: 200 VEMVENLRERGIE-VTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257
Query: 254 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 313
L +G+ I D++I+ IG ++ G G+ L + + VNE +T+ P +
Sbjct: 258 GAVVR----LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHI 313
Query: 314 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 357
YA GD I A GR+ A + S
Sbjct: 314 YAIGDAI-EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS 356
Score = 156 bits (396), Expect = 1e-39
Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 58/344 (16%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRV 637
+VVGG GA+ LR+ E LPY +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----------SEEDEIIMVERGEYISFANCGLPYYIGGVI 88
Query: 638 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 692
+ +L++T E K ++ + +++ + E EK I + + +
Sbjct: 89 T-------ERQKLLVQTVERMSKRFNLDIRVLSEVVKINKE--EKTITIKNVTTNETYNE 139
Query: 693 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 746
+ L+ G+ P I + +F LR V D + I +I + + VIG FIG
Sbjct: 140 AYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIG 199
Query: 747 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805
+E ++ VT+V + E+ + + ++ V+ V + V + E+N
Sbjct: 200 VEMVENLRERGIE-VTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257
Query: 806 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865
L +G+ I D++I+ IG ++ G G+ L + + VNE +T+ P +
Sbjct: 258 GAVVR----LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHI 313
Query: 866 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909
YA GD I A GR+ A + S
Sbjct: 314 YAIGDAI-EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS 356
Score = 156 bits (396), Expect = 1e-39
Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 58/344 (16%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRV 1108
+VVGG GA+ LR+ E LPY +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----------SEEDEIIMVERGEYISFANCGLPYYIGGVI 88
Query: 1109 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 1163
+ +L++T E K ++ + +++ + E EK I + + +
Sbjct: 89 T-------ERQKLLVQTVERMSKRFNLDIRVLSEVVKINKE--EKTITIKNVTTNETYNE 139
Query: 1164 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 1217
+ L+ G+ P I + +F LR V D + I +I + + VIG FIG
Sbjct: 140 AYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIG 199
Query: 1218 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 1276
+E ++ VT+V + E+ + + ++ V+ V + V + E+N
Sbjct: 200 VEMVENLRERGIE-VTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257
Query: 1277 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 1336
L +G+ I D++I+ IG ++ G G+ L + + VNE +T+ P +
Sbjct: 258 GAVVR----LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHI 313
Query: 1337 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 1380
YA GD I A GR+ A + S
Sbjct: 314 YAIGDAI-EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS 356
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 152 bits (387), Expect = 2e-39
Identities = 79/352 (22%), Positives = 129/352 (36%), Gaps = 79/352 (22%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----------------LPY---DRVK 86
IV+G G VE L + + +VK
Sbjct: 4 IVLGSSHGGYEAVEELLNL----------HPDAEIQWYEKGDFISFLSAGMQLYLEGKVK 53
Query: 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 141
+S+ T E + ++V +I + + E ++ L G
Sbjct: 54 -------DVNSVRYMTGEKMESRGVNVFSNTEITAIQPK--EHQVTVKDLVSGEERVENY 104
Query: 142 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 196
K+ ++ G+ P I D N ++ +R + A + NVVVIGS +IG+E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIE 163
Query: 197 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 255
AA AF + K VTV+ P L KE + +T+ E+ + V +E + +
Sbjct: 164 AAEAFAKAG-KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 256 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 315
+ + ADLV+V +G NT +L G +EL+ + +EY+ T+ P V+A
Sbjct: 223 VQKV---VTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFA 278
Query: 316 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GD L A+ A+ GR A N+ E
Sbjct: 279 VGDATLIKYNPADTEVNIAL-------AT-----NARKQGRFAVKNLEEPVK 318
Score = 152 bits (387), Expect = 2e-39
Identities = 79/352 (22%), Positives = 129/352 (36%), Gaps = 79/352 (22%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----------------LPY---DRVK 638
IV+G G VE L + + +VK
Sbjct: 4 IVLGSSHGGYEAVEELLNL----------HPDAEIQWYEKGDFISFLSAGMQLYLEGKVK 53
Query: 639 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 693
+S+ T E + ++V +I + + E ++ L G
Sbjct: 54 -------DVNSVRYMTGEKMESRGVNVFSNTEITAIQPK--EHQVTVKDLVSGEERVENY 104
Query: 694 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 748
K+ ++ G+ P I D N ++ +R + A + NVVVIGS +IG+E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIE 163
Query: 749 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807
AA AF + K VTV+ P L KE + +T+ E+ + V +E + +
Sbjct: 164 AAEAFAKAG-KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 808 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 867
+ + ADLV+V +G NT +L G +EL+ + +EY+ T+ P V+A
Sbjct: 223 VQKV---VTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFA 278
Query: 868 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GD L A+ A+ GR A N+ E
Sbjct: 279 VGDATLIKYNPADTEVNIAL-------AT-----NARKQGRFAVKNLEEPVK 318
Score = 152 bits (387), Expect = 2e-39
Identities = 79/352 (22%), Positives = 129/352 (36%), Gaps = 79/352 (22%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----------------LPY---DRVK 1109
IV+G G VE L + + +VK
Sbjct: 4 IVLGSSHGGYEAVEELLNL----------HPDAEIQWYEKGDFISFLSAGMQLYLEGKVK 53
Query: 1110 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 1164
+S+ T E + ++V +I + + E ++ L G
Sbjct: 54 -------DVNSVRYMTGEKMESRGVNVFSNTEITAIQPK--EHQVTVKDLVSGEERVENY 104
Query: 1165 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 1219
K+ ++ G+ P I D N ++ +R + A + NVVVIGS +IG+E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIE 163
Query: 1220 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278
AA AF + K VTV+ P L KE + +T+ E+ + V +E + +
Sbjct: 164 AAEAFAKAG-KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 1279 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 1338
+ + ADLV+V +G NT +L G +EL+ + +EY+ T+ P V+A
Sbjct: 223 VQKV---VTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFA 278
Query: 1339 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GD L A+ A+ GR A N+ E
Sbjct: 279 VGDATLIKYNPADTEVNIAL-------AT-----NARKQGRFAVKNLEEPVK 318
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 151 bits (385), Expect = 3e-39
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 86
IVVG +G V+ + + F + +K
Sbjct: 4 IVVGCTHAGTFAVKQTIAD----------HPDADVTAYEMNDNISFLSCGIALYLGKEIK 53
Query: 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 141
+ + + E + +V ++ + D E K IK L
Sbjct: 54 -----NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPE--TKTIKVKDLITNEEKTEAY 106
Query: 142 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 198
K+ + TGS P I D V+ + DA + + +IGS +IG E A
Sbjct: 107 DKLIMTTGSKPTVPPIPGIDSSR-VYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 199 -AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 257
A+ +V ++ + KE + + K +E+ GV V+ + V++FE E +D
Sbjct: 166 EAYSNQN-YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE--EVDD 222
Query: 258 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
+G I +D+ I+ IG NT L G V + A++ +EY+ ++ ++A G
Sbjct: 223 EIITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 318 DIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
D A Y PL A+ A GR+ LN+ E K
Sbjct: 282 DSAAVHYNPTNSNAYIPL-------AT-----NAVRQGRLVGLNLTEDKV 319
Score = 151 bits (385), Expect = 3e-39
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 638
IVVG +G V+ + + F + +K
Sbjct: 4 IVVGCTHAGTFAVKQTIAD----------HPDADVTAYEMNDNISFLSCGIALYLGKEIK 53
Query: 639 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 693
+ + + E + +V ++ + D E K IK L
Sbjct: 54 -----NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPE--TKTIKVKDLITNEEKTEAY 106
Query: 694 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750
K+ + TGS P I D V+ + DA + + +IGS +IG E A
Sbjct: 107 DKLIMTTGSKPTVPPIPGIDSSR-VYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 751 -AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809
A+ +V ++ + KE + + K +E+ GV V+ + V++FE E +D
Sbjct: 166 EAYSNQN-YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE--EVDD 222
Query: 810 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
+G I +D+ I+ IG NT L G V + A++ +EY+ ++ ++A G
Sbjct: 223 EIITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 870 DIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
D A Y PL A+ A GR+ LN+ E K
Sbjct: 282 DSAAVHYNPTNSNAYIPL-------AT-----NAVRQGRLVGLNLTEDKV 319
Score = 151 bits (385), Expect = 3e-39
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 1109
IVVG +G V+ + + F + +K
Sbjct: 4 IVVGCTHAGTFAVKQTIAD----------HPDADVTAYEMNDNISFLSCGIALYLGKEIK 53
Query: 1110 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 1164
+ + + E + +V ++ + D E K IK L
Sbjct: 54 -----NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPE--TKTIKVKDLITNEEKTEAY 106
Query: 1165 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221
K+ + TGS P I D V+ + DA + + +IGS +IG E A
Sbjct: 107 DKLIMTTGSKPTVPPIPGIDSSR-VYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 1222 -AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280
A+ +V ++ + KE + + K +E+ GV V+ + V++FE E +D
Sbjct: 166 EAYSNQN-YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE--EVDD 222
Query: 1281 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
+G I +D+ I+ IG NT L G V + A++ +EY+ ++ ++A G
Sbjct: 223 EIITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 1341 DIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
D A Y PL A+ A GR+ LN+ E K
Sbjct: 282 DSAAVHYNPTNSNAYIPL-------AT-----NAVRQGRLVGLNLTEDKV 319
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 150 bits (380), Expect = 3e-38
Identities = 62/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)
Query: 96 DSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK-LQDGTSIDFT--KIYLATGSSP 151
+ + +E + V + S D + K + L DG + T K+ ATGS P
Sbjct: 92 EGLFYSDKEELESLGAKVYMESPVQSIDYD--AKTVTALVDGKNHVETYDKLIFATGSQP 149
Query: 152 ------------RTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 197
++ + + +++ +++ ++ + + V V+G+ +IG+E
Sbjct: 150 ILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVEL 209
Query: 198 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
A AF K V ++ +++ + + K E G++ V N K
Sbjct: 210 AEAFQRKG-KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKV 268
Query: 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 316
+ + + D+VI+ +G NT +G ++L A +VN+ ET++PGVYA
Sbjct: 269 EKI---ITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQETSIPGVYAI 324
Query: 317 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GD A Y L AS A G +AA N
Sbjct: 325 GDCATIYDNATRDTNYIAL-------AS-----NAVRTGIVAAHNACGTDL 363
Score = 150 bits (380), Expect = 3e-38
Identities = 62/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)
Query: 648 DSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK-LQDGTSIDFT--KIYLATGSSP 703
+ + +E + V + S D + K + L DG + T K+ ATGS P
Sbjct: 92 EGLFYSDKEELESLGAKVYMESPVQSIDYD--AKTVTALVDGKNHVETYDKLIFATGSQP 149
Query: 704 ------------RTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 749
++ + + +++ +++ ++ + + V V+G+ +IG+E
Sbjct: 150 ILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVEL 209
Query: 750 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
A AF K V ++ +++ + + K E G++ V N K
Sbjct: 210 AEAFQRKG-KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKV 268
Query: 809 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 868
+ + + D+VI+ +G NT +G ++L A +VN+ ET++PGVYA
Sbjct: 269 EKI---ITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQETSIPGVYAI 324
Query: 869 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GD A Y L AS A G +AA N
Sbjct: 325 GDCATIYDNATRDTNYIAL-------AS-----NAVRTGIVAAHNACGTDL 363
Score = 150 bits (380), Expect = 3e-38
Identities = 62/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)
Query: 1119 DSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK-LQDGTSIDFT--KIYLATGSSP 1174
+ + +E + V + S D + K + L DG + T K+ ATGS P
Sbjct: 92 EGLFYSDKEELESLGAKVYMESPVQSIDYD--AKTVTALVDGKNHVETYDKLIFATGSQP 149
Query: 1175 ------------RTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 1220
++ + + +++ +++ ++ + + V V+G+ +IG+E
Sbjct: 150 ILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVEL 209
Query: 1221 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
A AF K V ++ +++ + + K E G++ V N K
Sbjct: 210 AEAFQRKG-KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKV 268
Query: 1280 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 1339
+ + + D+VI+ +G NT +G ++L A +VN+ ET++PGVYA
Sbjct: 269 EKI---ITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQETSIPGVYAI 324
Query: 1340 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GD A Y L AS A G +AA N
Sbjct: 325 GDCATIYDNATRDTNYIAL-------AS-----NAVRTGIVAAHNACGTDL 363
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 146 bits (372), Expect = 1e-37
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 82/351 (23%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 86
+VVG GATC +R+ D+ F LPY + V+
Sbjct: 5 VVVGAVAGGATCASQIRRL----------DKESDIIIFEKDRDMSFANCALPYVIGEVVE 54
Query: 87 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 141
L T E+FY I V ++I+ + E + + + + +
Sbjct: 55 -------DRRYALAYTPEKFYDRKQITVKTYHEVIAINDE--RQTVSVLNRKTNEQFEES 105
Query: 142 --KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 197
K+ L+ G+S + F LR +ED + I I V+V+G+ ++ +E
Sbjct: 106 YDKLILSPGASAN-SLGFESDI-TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEV 163
Query: 198 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
T++ R + + ++ + I + + + + + +++ NE
Sbjct: 164 LENLYERG-LHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNE-- 219
Query: 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 316
+G D++I G+GT N+ +++ ++L+ + + VN+ ETNVP +YA
Sbjct: 220 ----ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 317 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GDIA PL A A I A + T
Sbjct: 276 GDIATSHYRHVDLPASVPL-------AW-----GAHRAASIVAEQIAGNDT 314
Score = 146 bits (372), Expect = 1e-37
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 82/351 (23%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 638
+VVG GATC +R+ D+ F LPY + V+
Sbjct: 5 VVVGAVAGGATCASQIRRL----------DKESDIIIFEKDRDMSFANCALPYVIGEVVE 54
Query: 639 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 693
L T E+FY I V ++I+ + E + + + + +
Sbjct: 55 -------DRRYALAYTPEKFYDRKQITVKTYHEVIAINDE--RQTVSVLNRKTNEQFEES 105
Query: 694 --KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 749
K+ L+ G+S + F LR +ED + I I V+V+G+ ++ +E
Sbjct: 106 YDKLILSPGASAN-SLGFESDI-TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEV 163
Query: 750 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
T++ R + + ++ + I + + + + + +++ NE
Sbjct: 164 LENLYERG-LHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNE-- 219
Query: 809 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 868
+G D++I G+GT N+ +++ ++L+ + + VN+ ETNVP +YA
Sbjct: 220 ----ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 869 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GDIA PL A A I A + T
Sbjct: 276 GDIATSHYRHVDLPASVPL-------AW-----GAHRAASIVAEQIAGNDT 314
Score = 146 bits (372), Expect = 1e-37
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 82/351 (23%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 1109
+VVG GATC +R+ D+ F LPY + V+
Sbjct: 5 VVVGAVAGGATCASQIRRL----------DKESDIIIFEKDRDMSFANCALPYVIGEVVE 54
Query: 1110 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 1164
L T E+FY I V ++I+ + E + + + + +
Sbjct: 55 -------DRRYALAYTPEKFYDRKQITVKTYHEVIAINDE--RQTVSVLNRKTNEQFEES 105
Query: 1165 --KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 1220
K+ L+ G+S + F LR +ED + I I V+V+G+ ++ +E
Sbjct: 106 YDKLILSPGASAN-SLGFESDI-TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEV 163
Query: 1221 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
T++ R + + ++ + I + + + + + +++ NE
Sbjct: 164 LENLYERG-LHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNE-- 219
Query: 1280 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 1339
+G D++I G+GT N+ +++ ++L+ + + VN+ ETNVP +YA
Sbjct: 220 ----ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 1340 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GDIA PL A A I A + T
Sbjct: 276 GDIATSHYRHVDLPASVPL-------AW-----GAHRAASIVAEQIAGNDT 314
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 147 bits (373), Expect = 2e-37
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 80/354 (22%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 85
++++GG +G + + +N DEN + LPY +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----------DENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 86 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 140
+ ++ R + F I ++ D+E +K + + +F
Sbjct: 89 A-------STEKLIARNVKTFRDKYGIDAKVRHEVTKVDTE--KKIVYAEHTKTKDVFEF 139
Query: 141 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 194
+ ++ +ATG P D V L+T+ DA I + +V +IG IG
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 195 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 253
+E A F K V ++ R ++ E I K + ++ + NV +F+ N
Sbjct: 199 LEMAETFVELG-KKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 254 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 313
E+ V A D GT ADLV+V +G NT++L+G + N + A+ VN Y++TNV V
Sbjct: 257 ER--VEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDV 313
Query: 314 YAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
YA GD A + P+ + A GR+A LNM++K+
Sbjct: 314 YAAGDCATHYHVIKEIHDHIPI-------GT-----TANKQGRLAGLNMLDKRR 355
Score = 147 bits (373), Expect = 2e-37
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 80/354 (22%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 637
++++GG +G + + +N DEN + LPY +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----------DENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 638 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 692
+ ++ R + F I ++ D+E +K + + +F
Sbjct: 89 A-------STEKLIARNVKTFRDKYGIDAKVRHEVTKVDTE--KKIVYAEHTKTKDVFEF 139
Query: 693 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 746
+ ++ +ATG P D V L+T+ DA I + +V +IG IG
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 747 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805
+E A F K V ++ R ++ E I K + ++ + NV +F+ N
Sbjct: 199 LEMAETFVELG-KKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 806 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865
E+ V A D GT ADLV+V +G NT++L+G + N + A+ VN Y++TNV V
Sbjct: 257 ER--VEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDV 313
Query: 866 YAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
YA GD A + P+ + A GR+A LNM++K+
Sbjct: 314 YAAGDCATHYHVIKEIHDHIPI-------GT-----TANKQGRLAGLNMLDKRR 355
Score = 147 bits (373), Expect = 2e-37
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 80/354 (22%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 1108
++++GG +G + + +N DEN + LPY +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----------DENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 1109 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 1163
+ ++ R + F I ++ D+E +K + + +F
Sbjct: 89 A-------STEKLIARNVKTFRDKYGIDAKVRHEVTKVDTE--KKIVYAEHTKTKDVFEF 139
Query: 1164 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 1217
+ ++ +ATG P D V L+T+ DA I + +V +IG IG
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 1218 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 1276
+E A F K V ++ R ++ E I K + ++ + NV +F+ N
Sbjct: 199 LEMAETFVELG-KKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 1277 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 1336
E+ V A D GT ADLV+V +G NT++L+G + N + A+ VN Y++TNV V
Sbjct: 257 ER--VEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDV 313
Query: 1337 YAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
YA GD A + P+ + A GR+A LNM++K+
Sbjct: 314 YAAGDCATHYHVIKEIHDHIPI-------GT-----TANKQGRLAGLNMLDKRR 355
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 145 bits (368), Expect = 5e-37
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 96 DSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFT--KIYLATGSSP 151
D ++ E F K I + ++I D+ ++G + + A G+SP
Sbjct: 58 DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTG---YVRVRENGGEKSYEWDYLVFANGASP 114
Query: 152 RT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAA-AFCASKVK 206
+ I + VF DA I ++ NVV+IG +IG+E A AF A
Sbjct: 115 QVPAIEGVNLKG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN 173
Query: 207 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 266
VT++ RG + S KEV + + + + K V ++ E E+ + + +
Sbjct: 174 -VTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKV---VTDA 228
Query: 267 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA------ 320
A+LVI+ G N GV + A+ NE ++T+V VYA GD+A
Sbjct: 229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI 288
Query: 321 -----YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
+ PL A G +A N+ K+
Sbjct: 289 TGRRVWVPL-------AP-----AGNKMGYVAGSNIAGKEL 317
Score = 145 bits (368), Expect = 5e-37
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 648 DSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFT--KIYLATGSSP 703
D ++ E F K I + ++I D+ ++G + + A G+SP
Sbjct: 58 DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTG---YVRVRENGGEKSYEWDYLVFANGASP 114
Query: 704 RT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAA-AFCASKVK 758
+ I + VF DA I ++ NVV+IG +IG+E A AF A
Sbjct: 115 QVPAIEGVNLKG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN 173
Query: 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818
VT++ RG + S KEV + + + + K V ++ E E+ + + +
Sbjct: 174 -VTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKV---VTDA 228
Query: 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA------ 872
A+LVI+ G N GV + A+ NE ++T+V VYA GD+A
Sbjct: 229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI 288
Query: 873 -----YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
+ PL A G +A N+ K+
Sbjct: 289 TGRRVWVPL-------AP-----AGNKMGYVAGSNIAGKEL 317
Score = 145 bits (368), Expect = 5e-37
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 1119 DSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFT--KIYLATGSSP 1174
D ++ E F K I + ++I D+ ++G + + A G+SP
Sbjct: 58 DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTG---YVRVRENGGEKSYEWDYLVFANGASP 114
Query: 1175 RT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAA-AFCASKVK 1229
+ I + VF DA I ++ NVV+IG +IG+E A AF A
Sbjct: 115 QVPAIEGVNLKG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN 173
Query: 1230 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289
VT++ RG + S KEV + + + + K V ++ E E+ + + +
Sbjct: 174 -VTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKV---VTDA 228
Query: 1290 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA------ 1343
A+LVI+ G N GV + A+ NE ++T+V VYA GD+A
Sbjct: 229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI 288
Query: 1344 -----YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
+ PL A G +A N+ K+
Sbjct: 289 TGRRVWVPL-------AP-----AGNKMGYVAGSNIAGKEL 317
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 140 bits (356), Expect = 8e-35
Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 94/370 (25%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 86
+++GG GA+ R+ E LPY +
Sbjct: 5 LIIGGVAGGASAAARARRL----------SETAEIIMFERGEYVSFANCGLPYHISGEIA 54
Query: 87 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 141
+ +++L+T E F ++ V ++++ D K + L DG+ +
Sbjct: 55 -------QRSALVLQTPESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLLDGSEYQES 105
Query: 142 --KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGM 195
+ L+ G++P I D LR + D + I I + + V+G FIG+
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDNPL-THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 196 EAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 254
E + +K T++ + +E+ + +GV + +S
Sbjct: 165 EMMESLHHLGIK-TTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 255 KNDVTAAN-----------------LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
+ V + L NG + DL+I+ IG T G+ +
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGEL 282
Query: 298 KAVVVNEYLETNVPGVYAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRI 346
+ VN ++T+ P +YA GD PL A A GR+
Sbjct: 283 GGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPL-------AG-----PANRQGRM 330
Query: 347 AALNMVEKKT 356
AA NM ++
Sbjct: 331 AADNMFGREE 340
Score = 140 bits (356), Expect = 8e-35
Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 94/370 (25%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 638
+++GG GA+ R+ E LPY +
Sbjct: 5 LIIGGVAGGASAAARARRL----------SETAEIIMFERGEYVSFANCGLPYHISGEIA 54
Query: 639 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 693
+ +++L+T E F ++ V ++++ D K + L DG+ +
Sbjct: 55 -------QRSALVLQTPESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLLDGSEYQES 105
Query: 694 --KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGM 747
+ L+ G++P I D LR + D + I I + + V+G FIG+
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDNPL-THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 748 EAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 806
E + +K T++ + +E+ + +GV + +S
Sbjct: 165 EMMESLHHLGIK-TTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 807 KNDVTAAN-----------------LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
+ V + L NG + DL+I+ IG T G+ +
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGEL 282
Query: 850 KAVVVNEYLETNVPGVYAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRI 898
+ VN ++T+ P +YA GD PL A A GR+
Sbjct: 283 GGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPL-------AG-----PANRQGRM 330
Query: 899 AALNMVEKKT 908
AA NM ++
Sbjct: 331 AADNMFGREE 340
Score = 140 bits (356), Expect = 8e-35
Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 94/370 (25%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 1109
+++GG GA+ R+ E LPY +
Sbjct: 5 LIIGGVAGGASAAARARRL----------SETAEIIMFERGEYVSFANCGLPYHISGEIA 54
Query: 1110 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 1164
+ +++L+T E F ++ V ++++ D K + L DG+ +
Sbjct: 55 -------QRSALVLQTPESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLLDGSEYQES 105
Query: 1165 --KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGM 1218
+ L+ G++P I D LR + D + I I + + V+G FIG+
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDNPL-THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 1219 EAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277
E + +K T++ + +E+ + +GV + +S
Sbjct: 165 EMMESLHHLGIK-TTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 1278 KNDVTAAN-----------------LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
+ V + L NG + DL+I+ IG T G+ +
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGEL 282
Query: 1321 KAVVVNEYLETNVPGVYAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRI 1369
+ VN ++T+ P +YA GD PL A A GR+
Sbjct: 283 GGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPL-------AG-----PANRQGRM 330
Query: 1370 AALNMVEKKT 1379
AA NM ++
Sbjct: 331 AADNMFGREE 340
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 122 bits (308), Expect = 3e-29
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 105 FYKDNDIHVIKGK-KIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 161
+ I V+ G+ + D L ++L +G + F + +ATG+SP G+
Sbjct: 104 LGGNPAITVVHGEARFKDDQSL---TVRLNEGGERVVMFDRCLVATGASPAVPP-IPGLK 159
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV-P 217
+ Y T +A PE + VIGSS + +E A AF SKV TV+ R +
Sbjct: 160 ESPYW-TSTEALASDT--IPER-LAVIGSSVVALELAQAFARLGSKV---TVLARNTLFF 212
Query: 218 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 277
++ +GE +T F ++G++ + S + V + AD ++V
Sbjct: 213 RED---PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT---HGELRADKLLVA 266
Query: 278 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 335
G NT LD GV +N Q A+V+++ + T+ P +YA GD
Sbjct: 267 TGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC--------------TD 312
Query: 336 HYQL---AQYHGRIAALNMV--EKKTSLSTIP 362
Q A G AA+NM + L+ +P
Sbjct: 313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344
Score = 122 bits (308), Expect = 3e-29
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 657 FYKDNDIHVIKGK-KIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 713
+ I V+ G+ + D L ++L +G + F + +ATG+SP G+
Sbjct: 104 LGGNPAITVVHGEARFKDDQSL---TVRLNEGGERVVMFDRCLVATGASPAVPP-IPGLK 159
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV-P 769
+ Y T +A PE + VIGSS + +E A AF SKV TV+ R +
Sbjct: 160 ESPYW-TSTEALASDT--IPER-LAVIGSSVVALELAQAFARLGSKV---TVLARNTLFF 212
Query: 770 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829
++ +GE +T F ++G++ + S + V + AD ++V
Sbjct: 213 RED---PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT---HGELRADKLLVA 266
Query: 830 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 887
G NT LD GV +N Q A+V+++ + T+ P +YA GD
Sbjct: 267 TGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC--------------TD 312
Query: 888 HYQL---AQYHGRIAALNMV--EKKTSLSTIP 914
Q A G AA+NM + L+ +P
Sbjct: 313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344
Score = 122 bits (308), Expect = 3e-29
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 1128 FYKDNDIHVIKGK-KIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 1184
+ I V+ G+ + D L ++L +G + F + +ATG+SP G+
Sbjct: 104 LGGNPAITVVHGEARFKDDQSL---TVRLNEGGERVVMFDRCLVATGASPAVPP-IPGLK 159
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV-P 1240
+ Y T +A PE + VIGSS + +E A AF SKV TV+ R +
Sbjct: 160 ESPYW-TSTEALASDT--IPER-LAVIGSSVVALELAQAFARLGSKV---TVLARNTLFF 212
Query: 1241 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300
++ +GE +T F ++G++ + S + V + AD ++V
Sbjct: 213 RED---PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT---HGELRADKLLVA 266
Query: 1301 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358
G NT LD GV +N Q A+V+++ + T+ P +YA GD
Sbjct: 267 TGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC--------------TD 312
Query: 1359 HYQL---AQYHGRIAALNMV--EKKTSLSTIP 1385
Q A G AA+NM + L+ +P
Sbjct: 313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 118 bits (297), Expect = 1e-27
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 107 KDNDIHVIKGK-KIISDSEL---NEKKIKLQDG--TSIDFTKIYLATGSSPRTI--SQAD 158
+ VI G+ ++I + + K DG + + + +ATG+SPR + +Q D
Sbjct: 106 LSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPD 165
Query: 159 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
G + + P+ ++V+GS G E VTVV
Sbjct: 166 GERILTW----RQL--YDLDALPDH-LIVVGSGVTGAEFVDAYTELGVPVTVV------- 211
Query: 219 QESLG-------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 271
S + + + F +GV+ A +S + V + +G T+
Sbjct: 212 -ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT-GAGVLV-TMTDGRTVEG 268
Query: 272 DLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
++ IG+V NT+ L+ G++L + V+ T G+YA GD
Sbjct: 269 SHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
Score = 118 bits (297), Expect = 1e-27
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 659 KDNDIHVIKGK-KIISDSEL---NEKKIKLQDG--TSIDFTKIYLATGSSPRTI--SQAD 710
+ VI G+ ++I + + K DG + + + +ATG+SPR + +Q D
Sbjct: 106 LSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPD 165
Query: 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
G + + P+ ++V+GS G E VTVV
Sbjct: 166 GERILTW----RQL--YDLDALPDH-LIVVGSGVTGAEFVDAYTELGVPVTVV------- 211
Query: 771 QESLG-------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
S + + + F +GV+ A +S + V + +G T+
Sbjct: 212 -ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT-GAGVLV-TMTDGRTVEG 268
Query: 824 DLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
++ IG+V NT+ L+ G++L + V+ T G+YA GD
Sbjct: 269 SHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
Score = 118 bits (297), Expect = 1e-27
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 1130 KDNDIHVIKGK-KIISDSEL---NEKKIKLQDG--TSIDFTKIYLATGSSPRTI--SQAD 1181
+ VI G+ ++I + + K DG + + + +ATG+SPR + +Q D
Sbjct: 106 LSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPD 165
Query: 1182 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
G + + P+ ++V+GS G E VTVV
Sbjct: 166 GERILTW----RQL--YDLDALPDH-LIVVGSGVTGAEFVDAYTELGVPVTVV------- 211
Query: 1242 QESLG-------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294
S + + + F +GV+ A +S + V + +G T+
Sbjct: 212 -ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT-GAGVLV-TMTDGRTVEG 268
Query: 1295 DLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
++ IG+V NT+ L+ G++L + V+ T G+YA GD
Sbjct: 269 SHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 110 bits (277), Expect = 4e-25
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
+ N +++ + D ++ G + LA G+ P T+ GVN
Sbjct: 147 QLNLEYILNCPAKVID----NHTVEA-AGKVFKAKNLILAVGAGPGTLDVP-GVNAKGVF 200
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA--VPFQESLGK 224
+ + P S VVV+G S +E F + + ++ R ++
Sbjct: 201 DHATLVEEL-DYE-PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD---N 255
Query: 225 EVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADLVIVGIGTV 281
E + + +G++ + +NV+ E++ V A + I D V +G+G
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 282 LNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ G++L + V+VNEYL+T+VP VYA GD+ P
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 358
Score = 110 bits (277), Expect = 4e-25
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
+ N +++ + D ++ G + LA G+ P T+ GVN
Sbjct: 147 QLNLEYILNCPAKVID----NHTVEA-AGKVFKAKNLILAVGAGPGTLDVP-GVNAKGVF 200
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA--VPFQESLGK 776
+ + P S VVV+G S +E F + + ++ R ++
Sbjct: 201 DHATLVEEL-DYE-PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD---N 255
Query: 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADLVIVGIGTV 833
E + + +G++ + +NV+ E++ V A + I D V +G+G
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 834 LNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ G++L + V+VNEYL+T+VP VYA GD+ P
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 358
Score = 110 bits (277), Expect = 4e-25
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
+ N +++ + D ++ G + LA G+ P T+ GVN
Sbjct: 147 QLNLEYILNCPAKVID----NHTVEA-AGKVFKAKNLILAVGAGPGTLDVP-GVNAKGVF 200
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA--VPFQESLGK 1247
+ + P S VVV+G S +E F + + ++ R ++
Sbjct: 201 DHATLVEEL-DYE-PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD---N 255
Query: 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADLVIVGIGTV 1304
E + + +G++ + +NV+ E++ V A + I D V +G+G
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 1305 LNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ G++L + V+VNEYL+T+VP VYA GD+ P
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 358
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske,
iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons
catabolism, electron transport; 1.20A {Pseudomonas
putida}
Length = 106
Score = 99.6 bits (249), Expect = 5e-25
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+AV C+H L G L V C H F + TG ++ P + + + ++ D
Sbjct: 35 FFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGD 94
Query: 567 DSVVVQARKDELK 579
+ V V ELK
Sbjct: 95 E-VHVDLDNGELK 106
Score = 99.6 bits (249), Expect = 5e-25
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+AV C+H L G L V C H F + TG ++ P + + + ++ D
Sbjct: 35 FFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGD 94
Query: 1038 DSVVVQARKDELK 1050
+ V V ELK
Sbjct: 95 E-VHVDLDNGELK 106
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 109 bits (274), Expect = 6e-25
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
K N I I G +D+ N + L DG S+ F +ATGSS R + V
Sbjct: 102 KKNKITEIHGYGTFADA--NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 223
T E+ I P+S +++ G+ IGME + VT+V E L
Sbjct: 160 ---TYEEQ--ILSRELPKS-IIIAGAGAIGMEFGYVLKNYGVDVTIV--------EFLPR 205
Query: 224 ------KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 276
+V + I K F+ GV + V S VT + A+ V+
Sbjct: 206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ 265
Query: 277 GIGTVLNT-NY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
IG N Y LD GV L +KA+ V++Y+ TNV +YA GD+
Sbjct: 266 AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
Score = 109 bits (274), Expect = 6e-25
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
K N I I G +D+ N + L DG S+ F +ATGSS R + V
Sbjct: 102 KKNKITEIHGYGTFADA--NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 775
T E+ I P+S +++ G+ IGME + VT+V E L
Sbjct: 160 ---TYEEQ--ILSRELPKS-IIIAGAGAIGMEFGYVLKNYGVDVTIV--------EFLPR 205
Query: 776 ------KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 828
+V + I K F+ GV + V S VT + A+ V+
Sbjct: 206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ 265
Query: 829 GIGTVLNT-NY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
IG N Y LD GV L +KA+ V++Y+ TNV +YA GD+
Sbjct: 266 AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
Score = 109 bits (274), Expect = 6e-25
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
K N I I G +D+ N + L DG S+ F +ATGSS R + V
Sbjct: 102 KKNKITEIHGYGTFADA--NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 1246
T E+ I P+S +++ G+ IGME + VT+V E L
Sbjct: 160 ---TYEEQ--ILSRELPKS-IIIAGAGAIGMEFGYVLKNYGVDVTIV--------EFLPR 205
Query: 1247 ------KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 1299
+V + I K F+ GV + V S VT + A+ V+
Sbjct: 206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ 265
Query: 1300 GIGTVLNT-NY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
IG N Y LD GV L +KA+ V++Y+ TNV +YA GD+
Sbjct: 266 AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske
non-heme iron oxygenase system, terminal oxygenase; 1.80A
{Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Length = 115
Score = 98.9 bits (247), Expect = 2e-24
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 956 DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT 1015
+ + VG PLA YA C+H A L +G+L + CP+HG FN+ T
Sbjct: 17 GTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCT 76
Query: 1016 GDIEDFPGMDSLPCYKVTIQNDD 1038
G P L ++V ++ +
Sbjct: 77 GMPASSPCTVPLGVFEVEVKEGE 99
Score = 97.0 bits (242), Expect = 7e-24
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
YA C+H A L +G+L + CP+HG FN+ TG P L ++V ++
Sbjct: 39 FYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEG 98
Query: 567 D 567
+
Sbjct: 99 E 99
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 106 bits (266), Expect = 9e-24
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 160
+++++H+ + + + D E ++L G I KI +ATG+ + S G
Sbjct: 125 QNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT 180
Query: 161 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-- 217
N++F L + P+S +V++G +IG+E A T++ RG +
Sbjct: 181 SNEIFDLEKL-----------PKS-IVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 218 -FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 276
F ++ + + +KG+ + +A VS + E + L NG TI AD V++
Sbjct: 229 NFDY----DLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNGQTICADRVML 282
Query: 277 GIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
G V NT L+ GV++N AVVV+E + TNV ++A GD+
Sbjct: 283 ATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
Score = 106 bits (266), Expect = 9e-24
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 712
+++++H+ + + + D E ++L G I KI +ATG+ + S G
Sbjct: 125 QNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT 180
Query: 713 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-- 769
N++F L + P+S +V++G +IG+E A T++ RG +
Sbjct: 181 SNEIFDLEKL-----------PKS-IVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 770 -FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 828
F ++ + + +KG+ + +A VS + E + L NG TI AD V++
Sbjct: 229 NFDY----DLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNGQTICADRVML 282
Query: 829 GIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
G V NT L+ GV++N AVVV+E + TNV ++A GD+
Sbjct: 283 ATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
Score = 106 bits (266), Expect = 9e-24
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 1183
+++++H+ + + + D E ++L G I KI +ATG+ + S G
Sbjct: 125 QNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT 180
Query: 1184 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-- 1240
N++F L + P+S +V++G +IG+E A T++ RG +
Sbjct: 181 SNEIFDLEKL-----------PKS-IVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 1241 -FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299
F ++ + + +KG+ + +A VS + E + L NG TI AD V++
Sbjct: 229 NFDY----DLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNGQTICADRVML 282
Query: 1300 GIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
G V NT L+ GV++N AVVV+E + TNV ++A GD+
Sbjct: 283 ATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 104 bits (263), Expect = 2e-23
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
+ + V+ G + +++ +D T+ ++ I +ATG G
Sbjct: 116 EKEKVDVVFGWARFNKD--GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT 173
Query: 161 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 217
+ F L P+ VVV+G+ +IG+E A +V RG
Sbjct: 174 DSDGFFRLEEQ-----------PKK-VVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL 221
Query: 218 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLV 274
F E + IT + +G+ + + EKN + D ++++ +I D +
Sbjct: 222 RKFDE----CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDEL 277
Query: 275 IVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
I IG + + G++LN ++ +EY TNVP +Y+ GD+
Sbjct: 278 IWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
Score = 104 bits (263), Expect = 2e-23
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
+ + V+ G + +++ +D T+ ++ I +ATG G
Sbjct: 116 EKEKVDVVFGWARFNKD--GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT 173
Query: 713 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 769
+ F L P+ VVV+G+ +IG+E A +V RG
Sbjct: 174 DSDGFFRLEEQ-----------PKK-VVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL 221
Query: 770 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLV 826
F E + IT + +G+ + + EKN + D ++++ +I D +
Sbjct: 222 RKFDE----CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDEL 277
Query: 827 IVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
I IG + + G++LN ++ +EY TNVP +Y+ GD+
Sbjct: 278 IWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
Score = 104 bits (263), Expect = 2e-23
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
+ + V+ G + +++ +D T+ ++ I +ATG G
Sbjct: 116 EKEKVDVVFGWARFNKD--GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT 173
Query: 1184 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 1240
+ F L P+ VVV+G+ +IG+E A +V RG
Sbjct: 174 DSDGFFRLEEQ-----------PKK-VVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL 221
Query: 1241 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLV 1297
F E + IT + +G+ + + EKN + D ++++ +I D +
Sbjct: 222 RKFDE----CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDEL 277
Query: 1298 IVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
I IG + + G++LN ++ +EY TNVP +Y+ GD+
Sbjct: 278 IWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske
ferredoxin, 2Fe-2S, electron transfer, oxidoreductase;
2.00A {Nocardioides aromaticivorans}
Length = 121
Score = 94.7 bits (236), Expect = 5e-23
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 506 NIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 563
++YA+ CSH A L G + CP H F++ TG P + + Y V +
Sbjct: 43 SVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVV 102
Query: 564 QNDDSVVVQARKDE 577
+ ++V ++ +
Sbjct: 103 DGTE-ILVAPKEAD 115
Score = 94.7 bits (236), Expect = 5e-23
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 977 NIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034
++YA+ CSH A L G + CP H F++ TG P + + Y V +
Sbjct: 43 SVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVV 102
Query: 1035 QNDDSVVVQARKDE 1048
+ ++V ++ +
Sbjct: 103 DGTE-ILVAPKEAD 115
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin,
oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Length = 108
Score = 94.3 bits (235), Expect = 6e-23
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 956 DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT 1015
+ +A+ M LA + ++ C+H A L G + CP+HG F+IAT
Sbjct: 16 GEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIAT 75
Query: 1016 GDIEDFPGMDSLPCYKVTIQNDD 1038
G + FP + Y VTI++
Sbjct: 76 GAAKAFPCQIPIKTYPVTIEDGW 98
Score = 92.0 bits (229), Expect = 3e-22
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
++ C+H A L G + CP+HG F+IATG + FP + Y VTI++
Sbjct: 38 VFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDG 97
Query: 567 D 567
Sbjct: 98 W 98
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 101 bits (254), Expect = 2e-22
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 160
+ ++ + ++ +KL G ++ +I +A G P G
Sbjct: 104 ANAGAEILDTRAELAG----PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159
Query: 161 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVP- 217
N+ F L + PES +++ G +I +E A F VK T++ RG
Sbjct: 160 SNEAFDLPAL-----------PES-ILIAGGGYIAVEFANIFHGLGVK-TTLIYRGKEIL 206
Query: 218 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275
F + ++ + E KG++ + + + S + A I AD V+
Sbjct: 207 SRFDQ----DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT-TMKHGEIVADQVM 261
Query: 276 VGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
+ +G + NTN L+ GV N A++V+ + T+ PG+YA GD+
Sbjct: 262 LALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
Score = 101 bits (254), Expect = 2e-22
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 712
+ ++ + ++ +KL G ++ +I +A G P G
Sbjct: 104 ANAGAEILDTRAELAG----PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159
Query: 713 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVP- 769
N+ F L + PES +++ G +I +E A F VK T++ RG
Sbjct: 160 SNEAFDLPAL-----------PES-ILIAGGGYIAVEFANIFHGLGVK-TTLIYRGKEIL 206
Query: 770 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827
F + ++ + E KG++ + + + S + A I AD V+
Sbjct: 207 SRFDQ----DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT-TMKHGEIVADQVM 261
Query: 828 VGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
+ +G + NTN L+ GV N A++V+ + T+ PG+YA GD+
Sbjct: 262 LALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
Score = 101 bits (254), Expect = 2e-22
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 1183
+ ++ + ++ +KL G ++ +I +A G P G
Sbjct: 104 ANAGAEILDTRAELAG----PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159
Query: 1184 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVP- 1240
N+ F L + PES +++ G +I +E A F VK T++ RG
Sbjct: 160 SNEAFDLPAL-----------PES-ILIAGGGYIAVEFANIFHGLGVK-TTLIYRGKEIL 206
Query: 1241 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298
F + ++ + E KG++ + + + S + A I AD V+
Sbjct: 207 SRFDQ----DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT-TMKHGEIVADQVM 261
Query: 1299 VGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
+ +G + NTN L+ GV N A++V+ + T+ PG+YA GD+
Sbjct: 262 LALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 98.7 bits (247), Expect = 1e-21
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 161
N++ VIKG D K +++ +G +I I +ATG P I + +
Sbjct: 104 GKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD 158
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 218
F L + PE V V+G+ +IG+E + P F
Sbjct: 159 GFFALPAL-----------PER-VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 206
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ E + ++ ++G + A + KN +T L++G + D +I I
Sbjct: 207 DP----MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAI 261
Query: 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
G + L+ GV+ N + +VV++Y TN+ G+YA GD
Sbjct: 262 GREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
Score = 98.7 bits (247), Expect = 1e-21
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 713
N++ VIKG D K +++ +G +I I +ATG P I + +
Sbjct: 104 GKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD 158
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 770
F L + PE V V+G+ +IG+E + P F
Sbjct: 159 GFFALPAL-----------PER-VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 206
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ E + ++ ++G + A + KN +T L++G + D +I I
Sbjct: 207 DP----MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAI 261
Query: 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
G + L+ GV+ N + +VV++Y TN+ G+YA GD
Sbjct: 262 GREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
Score = 98.7 bits (247), Expect = 1e-21
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 1184
N++ VIKG D K +++ +G +I I +ATG P I + +
Sbjct: 104 GKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD 158
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 1241
F L + PE V V+G+ +IG+E + P F
Sbjct: 159 GFFALPAL-----------PER-VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 206
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ E + ++ ++G + A + KN +T L++G + D +I I
Sbjct: 207 DP----MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAI 261
Query: 1302 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
G + L+ GV+ N + +VV++Y TN+ G+YA GD
Sbjct: 262 GREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske
ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism,
electron transport, iron; 1.85A {Pseudomonas putida}
Length = 103
Score = 89.2 bits (222), Expect = 3e-21
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
IYA C+H A + G L + CP H F++ TG P ++ Y V I+N
Sbjct: 37 IYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENL 96
Query: 567 D 567
Sbjct: 97 R 97
Score = 89.2 bits (222), Expect = 3e-21
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
IYA C+H A + G L + CP H F++ TG P ++ Y V I+N
Sbjct: 37 IYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENL 96
Query: 1038 D 1038
Sbjct: 97 R 97
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 97.6 bits (244), Expect = 4e-21
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 105 FYKDNDIHVIKGKKIISDS---ELNEK-KIKLQDGTSIDFTKIYLATGSSPRT--ISQAD 158
F + G + + E K + I LATGS P+ I +
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE 176
Query: 159 GV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVTVV 211
N+ FYL P V+ +G FI +E A A+ K VT+
Sbjct: 177 HCISSNEAFYLPEP-----------PRR-VLTVGGGFISVEFAGIFNAYKPPGGK-VTLC 223
Query: 212 GRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 268
R + F E + E +TK + G++ + N + N ++G T
Sbjct: 224 YRNNLILRGFDE----TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHV-TFESGKT 278
Query: 269 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
+ D+V++ IG + TN L GV+L + V V+E+ TNVP +YA GDI
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331
Score = 97.6 bits (244), Expect = 4e-21
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 657 FYKDNDIHVIKGKKIISDS---ELNEK-KIKLQDGTSIDFTKIYLATGSSPRT--ISQAD 710
F + G + + E K + I LATGS P+ I +
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE 176
Query: 711 GV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVTVV 763
N+ FYL P V+ +G FI +E A A+ K VT+
Sbjct: 177 HCISSNEAFYLPEP-----------PRR-VLTVGGGFISVEFAGIFNAYKPPGGK-VTLC 223
Query: 764 GRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 820
R + F E + E +TK + G++ + N + N ++G T
Sbjct: 224 YRNNLILRGFDE----TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHV-TFESGKT 278
Query: 821 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
+ D+V++ IG + TN L GV+L + V V+E+ TNVP +YA GDI
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331
Score = 97.6 bits (244), Expect = 4e-21
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 1128 FYKDNDIHVIKGKKIISDS---ELNEK-KIKLQDGTSIDFTKIYLATGSSPRT--ISQAD 1181
F + G + + E K + I LATGS P+ I +
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE 176
Query: 1182 GV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVTVV 1234
N+ FYL P V+ +G FI +E A A+ K VT+
Sbjct: 177 HCISSNEAFYLPEP-----------PRR-VLTVGGGFISVEFAGIFNAYKPPGGK-VTLC 223
Query: 1235 GRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 1291
R + F E + E +TK + G++ + N + N ++G T
Sbjct: 224 YRNNLILRGFDE----TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHV-TFESGKT 278
Query: 1292 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
+ D+V++ IG + TN L GV+L + V V+E+ TNVP +YA GDI
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 97.2 bits (243), Expect = 6e-21
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 40/235 (17%)
Query: 105 FYKDNDIHVIKGKKIISDS---ELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADG 159
F + +G + D+ + E I LATGS P+ +G
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADP-NSAVLETLDTEYILLATGSWPQ-HLGIEG 170
Query: 160 V------NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVT 209
N+ FYL P+ + +G +I +E A A+ A + V
Sbjct: 171 DDLCITSNEAFYLDEA-----------PKR-ALCVGGGYISIEFAGIFNAYKARGGQ-VD 217
Query: 210 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 266
+ RG + F E+ +++T+ + G+ N + KN ++G
Sbjct: 218 LAYRGDMILRGFDS----ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV-VFESG 272
Query: 267 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
D+V++ IG V + L+ GVE+ A+ V+ Y +TNV +YA GD+
Sbjct: 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
Score = 97.2 bits (243), Expect = 6e-21
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 40/235 (17%)
Query: 657 FYKDNDIHVIKGKKIISDS---ELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADG 711
F + +G + D+ + E I LATGS P+ +G
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADP-NSAVLETLDTEYILLATGSWPQ-HLGIEG 170
Query: 712 V------NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVT 761
N+ FYL P+ + +G +I +E A A+ A + V
Sbjct: 171 DDLCITSNEAFYLDEA-----------PKR-ALCVGGGYISIEFAGIFNAYKARGGQ-VD 217
Query: 762 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818
+ RG + F E+ +++T+ + G+ N + KN ++G
Sbjct: 218 LAYRGDMILRGFDS----ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV-VFESG 272
Query: 819 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
D+V++ IG V + L+ GVE+ A+ V+ Y +TNV +YA GD+
Sbjct: 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
Score = 97.2 bits (243), Expect = 6e-21
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 40/235 (17%)
Query: 1128 FYKDNDIHVIKGKKIISDS---ELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADG 1182
F + +G + D+ + E I LATGS P+ +G
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADP-NSAVLETLDTEYILLATGSWPQ-HLGIEG 170
Query: 1183 V------NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVT 1232
N+ FYL P+ + +G +I +E A A+ A + V
Sbjct: 171 DDLCITSNEAFYLDEA-----------PKR-ALCVGGGYISIEFAGIFNAYKARGGQ-VD 217
Query: 1233 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289
+ RG + F E+ +++T+ + G+ N + KN ++G
Sbjct: 218 LAYRGDMILRGFDS----ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV-VFESG 272
Query: 1290 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
D+V++ IG V + L+ GVE+ A+ V+ Y +TNV +YA GD+
Sbjct: 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 96.8 bits (242), Expect = 7e-21
Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 161
+ I + G D I++ +G + I +ATG P + A+ +
Sbjct: 103 ERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSD 157
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 218
F L+ P+ V +IG+ +IG+E A S VTVV F
Sbjct: 158 GFFALQQQ-----------PKR-VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF 205
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ + + ++G++ ++ V++ E++ T D D VI +
Sbjct: 206 DP----LLSATLAENMHAQGIETHLEFAVAALERDA-QGTTLVAQDGTRLEGFDSVIWAV 260
Query: 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 336
G NT L+ G+E+ V + Y TNVPGVYA GDI G
Sbjct: 261 GRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI--------------TGR 306
Query: 337 YQL---AQYHGRIAA----LNMVEKKTSLSTIP 362
QL A GR A E+K IP
Sbjct: 307 DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIP 339
Score = 96.8 bits (242), Expect = 7e-21
Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 713
+ I + G D I++ +G + I +ATG P + A+ +
Sbjct: 103 ERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSD 157
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 770
F L+ P+ V +IG+ +IG+E A S VTVV F
Sbjct: 158 GFFALQQQ-----------PKR-VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF 205
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ + + ++G++ ++ V++ E++ T D D VI +
Sbjct: 206 DP----LLSATLAENMHAQGIETHLEFAVAALERDA-QGTTLVAQDGTRLEGFDSVIWAV 260
Query: 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 888
G NT L+ G+E+ V + Y TNVPGVYA GDI G
Sbjct: 261 GRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI--------------TGR 306
Query: 889 YQL---AQYHGRIAA----LNMVEKKTSLSTIP 914
QL A GR A E+K IP
Sbjct: 307 DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIP 339
Score = 96.8 bits (242), Expect = 7e-21
Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 1184
+ I + G D I++ +G + I +ATG P + A+ +
Sbjct: 103 ERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSD 157
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 1241
F L+ P+ V +IG+ +IG+E A S VTVV F
Sbjct: 158 GFFALQQQ-----------PKR-VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF 205
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ + + ++G++ ++ V++ E++ T D D VI +
Sbjct: 206 DP----LLSATLAENMHAQGIETHLEFAVAALERDA-QGTTLVAQDGTRLEGFDSVIWAV 260
Query: 1302 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359
G NT L+ G+E+ V + Y TNVPGVYA GDI G
Sbjct: 261 GRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI--------------TGR 306
Query: 1360 YQL---AQYHGRIAA----LNMVEKKTSLSTIP 1385
QL A GR A E+K IP
Sbjct: 307 DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIP 339
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 96.5 bits (241), Expect = 1e-20
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 49/264 (18%)
Query: 109 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK------ 162
++ I+G D E +++ D + + +I +ATGS P
Sbjct: 110 DEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND 165
Query: 163 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG--AVPFQ 219
+F L + P+S V V G IG+E + V V GR Q
Sbjct: 166 NLFELNDL-----------PKS-VAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ 213
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 277
+ +E+ K F + F KA V S + E +G TT V+
Sbjct: 214 D---EEMKRYAEKTFN-EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAA 269
Query: 278 IGTVLNTNYL--DGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAP--LHSFYNKNA 332
G N + L + +EL+ + + + +E L+T+V ++ GD LH
Sbjct: 270 TGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHE------ 323
Query: 333 SIGHYQLAQYHGRIAALNMVEKKT 356
A G++A N
Sbjct: 324 -------AADDGKVAGTNAGAYPV 340
Score = 96.5 bits (241), Expect = 1e-20
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 49/264 (18%)
Query: 661 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK------ 714
++ I+G D E +++ D + + +I +ATGS P
Sbjct: 110 DEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND 165
Query: 715 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG--AVPFQ 771
+F L + P+S V V G IG+E + V V GR Q
Sbjct: 166 NLFELNDL-----------PKS-VAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ 213
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 829
+ +E+ K F + F KA V S + E +G TT V+
Sbjct: 214 D---EEMKRYAEKTFN-EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAA 269
Query: 830 IGTVLNTNYL--DGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAP--LHSFYNKNA 884
G N + L + +EL+ + + + +E L+T+V ++ GD LH
Sbjct: 270 TGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHE------ 323
Query: 885 SIGHYQLAQYHGRIAALNMVEKKT 908
A G++A N
Sbjct: 324 -------AADDGKVAGTNAGAYPV 340
Score = 96.5 bits (241), Expect = 1e-20
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 49/264 (18%)
Query: 1132 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK------ 1185
++ I+G D E +++ D + + +I +ATGS P
Sbjct: 110 DEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND 165
Query: 1186 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG--AVPFQ 1242
+F L + P+S V V G IG+E + V V GR Q
Sbjct: 166 NLFELNDL-----------PKS-VAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ 213
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 1300
+ +E+ K F + F KA V S + E +G TT V+
Sbjct: 214 D---EEMKRYAEKTFN-EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAA 269
Query: 1301 IGTVLNTNYL--DGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAP--LHSFYNKNA 1355
G N + L + +EL+ + + + +E L+T+V ++ GD LH
Sbjct: 270 TGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHE------ 323
Query: 1356 SIGHYQLAQYHGRIAALNMVEKKT 1379
A G++A N
Sbjct: 324 -------AADDGKVAGTNAGAYPV 340
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 96.4 bits (241), Expect = 1e-20
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 162
K N + +KG +E + +G T + I +ATGS +++ D
Sbjct: 107 KKNKVTYVKGYGKFVSP--SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 163 VFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 217
V L + P+ +VVIG+ +IG+E + VTVV
Sbjct: 165 VSSTGALALSEI-----------PKK-LVVIGAGYIGLEMGSVWGRIGSEVTVV-----E 207
Query: 218 FQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIP 270
F + E+ ++ + E +G+KF +K V + + +T G T I
Sbjct: 208 FASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE 267
Query: 271 ADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
AD+V+V G T+ L D GVE + ++VNE TNV GVYA GD+ P
Sbjct: 268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
Score = 96.4 bits (241), Expect = 1e-20
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 714
K N + +KG +E + +G T + I +ATGS +++ D
Sbjct: 107 KKNKVTYVKGYGKFVSP--SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 715 VFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769
V L + P+ +VVIG+ +IG+E + VTVV
Sbjct: 165 VSSTGALALSEI-----------PKK-LVVIGAGYIGLEMGSVWGRIGSEVTVV-----E 207
Query: 770 FQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIP 822
F + E+ ++ + E +G+KF +K V + + +T G T I
Sbjct: 208 FASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE 267
Query: 823 ADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
AD+V+V G T+ L D GVE + ++VNE TNV GVYA GD+ P
Sbjct: 268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
Score = 96.4 bits (241), Expect = 1e-20
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 1185
K N + +KG +E + +G T + I +ATGS +++ D
Sbjct: 107 KKNKVTYVKGYGKFVSP--SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 1186 VFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240
V L + P+ +VVIG+ +IG+E + VTVV
Sbjct: 165 VSSTGALALSEI-----------PKK-LVVIGAGYIGLEMGSVWGRIGSEVTVV-----E 207
Query: 1241 FQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIP 1293
F + E+ ++ + E +G+KF +K V + + +T G T I
Sbjct: 208 FASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE 267
Query: 1294 ADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
AD+V+V G T+ L D GVE + ++VNE TNV GVYA GD+ P
Sbjct: 268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster,
beta sandwich, oxido; 1.60A {Burkholderia xenovorans}
SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Length = 112
Score = 87.3 bits (217), Expect = 1e-20
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGR-VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
++A +C+H L G +G V C H F + TG ++ P ++L + + I++
Sbjct: 39 LFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIED 98
Query: 566 DD 567
+D
Sbjct: 99 ND 100
Score = 87.3 bits (217), Expect = 1e-20
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGR-VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
++A +C+H L G +G V C H F + TG ++ P ++L + + I++
Sbjct: 39 LFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIED 98
Query: 1037 DD 1038
+D
Sbjct: 99 ND 100
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 96.0 bits (240), Expect = 1e-20
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GV---- 160
+ I +I+G + + I++ G I +ATG P T ++ G
Sbjct: 119 TKSHIEIIRGHAAFTSD--PKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 161 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 217
+ F L + P V++G+ +I +E A ++ +++ R
Sbjct: 176 TSDGFFQLEEL-----------PGR-SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 223
Query: 218 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-------KNDVTAANLDNGTT 268
F + T+ E+ GV+ + + V +K V
Sbjct: 224 RSFDS----MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI 279
Query: 269 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
D ++ IG V NT L+ G++ + + ++V+E+ TNV G+YA GD+
Sbjct: 280 PDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332
Score = 96.0 bits (240), Expect = 1e-20
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GV---- 712
+ I +I+G + + I++ G I +ATG P T ++ G
Sbjct: 119 TKSHIEIIRGHAAFTSD--PKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 713 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 769
+ F L + P V++G+ +I +E A ++ +++ R
Sbjct: 176 TSDGFFQLEEL-----------PGR-SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 223
Query: 770 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-------KNDVTAANLDNGTT 820
F + T+ E+ GV+ + + V +K V
Sbjct: 224 RSFDS----MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI 279
Query: 821 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
D ++ IG V NT L+ G++ + + ++V+E+ TNV G+YA GD+
Sbjct: 280 PDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332
Score = 96.0 bits (240), Expect = 1e-20
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GV---- 1183
+ I +I+G + + I++ G I +ATG P T ++ G
Sbjct: 119 TKSHIEIIRGHAAFTSD--PKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 1184 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 1240
+ F L + P V++G+ +I +E A ++ +++ R
Sbjct: 176 TSDGFFQLEEL-----------PGR-SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 223
Query: 1241 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-------KNDVTAANLDNGTT 1291
F + T+ E+ GV+ + + V +K V
Sbjct: 224 RSFDS----MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI 279
Query: 1292 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
D ++ IG V NT L+ G++ + + ++V+E+ TNV G+YA GD+
Sbjct: 280 PDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 95.3 bits (238), Expect = 2e-20
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 37/231 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQA--DGVNKV 163
K N I +G E+K+ +++ ++ I +ATGS+P A D V
Sbjct: 100 KKNGIARHQGTARFLS----ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVV 155
Query: 164 FY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
V P+ ++V+G IG+E V V+ +
Sbjct: 156 TSTEALSFPEV-----------PKR-LIVVGGGVIGLELGVVWHRLGAEVIVL-----EY 198
Query: 219 QESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 274
+ + EV ++F+ +G+ V++ L+ G + AD V
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGARV-ELEGGEVLEADRV 256
Query: 275 IVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+V +G T L + G+ + + + V+E+L T VP +YA GD+ P
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
Score = 95.3 bits (238), Expect = 2e-20
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 37/231 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQA--DGVNKV 715
K N I +G E+K+ +++ ++ I +ATGS+P A D V
Sbjct: 100 KKNGIARHQGTARFLS----ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVV 155
Query: 716 FY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
V P+ ++V+G IG+E V V+ +
Sbjct: 156 TSTEALSFPEV-----------PKR-LIVVGGGVIGLELGVVWHRLGAEVIVL-----EY 198
Query: 771 QESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826
+ + EV ++F+ +G+ V++ L+ G + AD V
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGARV-ELEGGEVLEADRV 256
Query: 827 IVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+V +G T L + G+ + + + V+E+L T VP +YA GD+ P
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
Score = 95.3 bits (238), Expect = 2e-20
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 37/231 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQA--DGVNKV 1186
K N I +G E+K+ +++ ++ I +ATGS+P A D V
Sbjct: 100 KKNGIARHQGTARFLS----ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVV 155
Query: 1187 FY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
V P+ ++V+G IG+E V V+ +
Sbjct: 156 TSTEALSFPEV-----------PKR-LIVVGGGVIGLELGVVWHRLGAEVIVL-----EY 198
Query: 1242 QESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297
+ + EV ++F+ +G+ V++ L+ G + AD V
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGARV-ELEGGEVLEADRV 256
Query: 1298 IVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+V +G T L + G+ + + + V+E+L T VP +YA GD+ P
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 95.0 bits (237), Expect = 3e-20
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 107 KDNDIHVIKGK---------KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--IS 155
+ + + +G I + N K + ++ I +A G+ P +
Sbjct: 100 SKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK 159
Query: 156 QADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVT 209
+ ++ F ++ + + ++GS +I +E
Sbjct: 160 GIENTISSDEFFNIKE------------SKK-IGIVGSGYIAVELINVIKRLGIDS---Y 203
Query: 210 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 266
+ RG F E V + + + V A+V +K +++ D
Sbjct: 204 IFARGNRILRKFDE----SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR 259
Query: 267 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
D VI +G +T L+ VE N +VV+E T+V +YA GD
Sbjct: 260 IYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKK 318
Query: 325 HSFYNKNASIGHYQLAQYHGR 345
+ Y +Y +
Sbjct: 319 SKEIEDLNLLKLYNEERYLNK 339
Score = 95.0 bits (237), Expect = 3e-20
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 659 KDNDIHVIKGK---------KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--IS 707
+ + + +G I + N K + ++ I +A G+ P +
Sbjct: 100 SKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK 159
Query: 708 QADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVT 761
+ ++ F ++ + + ++GS +I +E
Sbjct: 160 GIENTISSDEFFNIKE------------SKK-IGIVGSGYIAVELINVIKRLGIDS---Y 203
Query: 762 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818
+ RG F E V + + + V A+V +K +++ D
Sbjct: 204 IFARGNRILRKFDE----SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR 259
Query: 819 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
D VI +G +T L+ VE N +VV+E T+V +YA GD
Sbjct: 260 IYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKK 318
Query: 877 HSFYNKNASIGHYQLAQYHGR 897
+ Y +Y +
Sbjct: 319 SKEIEDLNLLKLYNEERYLNK 339
Score = 95.0 bits (237), Expect = 3e-20
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 1130 KDNDIHVIKGK---------KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--IS 1178
+ + + +G I + N K + ++ I +A G+ P +
Sbjct: 100 SKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK 159
Query: 1179 QADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVT 1232
+ ++ F ++ + + ++GS +I +E
Sbjct: 160 GIENTISSDEFFNIKE------------SKK-IGIVGSGYIAVELINVIKRLGIDS---Y 203
Query: 1233 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289
+ RG F E V + + + V A+V +K +++ D
Sbjct: 204 IFARGNRILRKFDE----SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR 259
Query: 1290 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
D VI +G +T L+ VE N +VV+E T+V +YA GD
Sbjct: 260 IYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKK 318
Query: 1348 HSFYNKNASIGHYQLAQYHGR 1368
+ Y +Y +
Sbjct: 319 SKEIEDLNLLKLYNEERYLNK 339
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 94.5 bits (236), Expect = 5e-20
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI----SQADGV 160
K N I +G + + + + G ++ + +ATGS I D
Sbjct: 126 KKNKIDGFQGTGKVLGQ--GKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK 183
Query: 161 NKVFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
V L V P S ++V+G IG+E + A VTVV
Sbjct: 184 TIVSSTGALALEKV-----------PAS-MIVVGGGVIGLELGSVWARLGAKVTVV---- 227
Query: 216 VPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TT 268
F +++ EV +++ ++ +G+ F + A V+ K+ VT + G TT
Sbjct: 228 -EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT 286
Query: 269 IPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ A++V++ G +T+ L GV L+ + V ++ + +T++ GVYA GD+ P
Sbjct: 287 LDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
Score = 94.5 bits (236), Expect = 5e-20
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI----SQADGV 712
K N I +G + + + + G ++ + +ATGS I D
Sbjct: 126 KKNKIDGFQGTGKVLGQ--GKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK 183
Query: 713 NKVFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
V L V P S ++V+G IG+E + A VTVV
Sbjct: 184 TIVSSTGALALEKV-----------PAS-MIVVGGGVIGLELGSVWARLGAKVTVV---- 227
Query: 768 VPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TT 820
F +++ EV +++ ++ +G+ F + A V+ K+ VT + G TT
Sbjct: 228 -EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT 286
Query: 821 IPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ A++V++ G +T+ L GV L+ + V ++ + +T++ GVYA GD+ P
Sbjct: 287 LDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
Score = 94.5 bits (236), Expect = 5e-20
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI----SQADGV 1183
K N I +G + + + + G ++ + +ATGS I D
Sbjct: 126 KKNKIDGFQGTGKVLGQ--GKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK 183
Query: 1184 NKVFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
V L V P S ++V+G IG+E + A VTVV
Sbjct: 184 TIVSSTGALALEKV-----------PAS-MIVVGGGVIGLELGSVWARLGAKVTVV---- 227
Query: 1239 VPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TT 1291
F +++ EV +++ ++ +G+ F + A V+ K+ VT + G TT
Sbjct: 228 -EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT 286
Query: 1292 IPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ A++V++ G +T+ L GV L+ + V ++ + +T++ GVYA GD+ P
Sbjct: 287 LDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 91.5 bits (228), Expect = 4e-19
Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 25/228 (10%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
+ + KG I D +K +G + + +A+G+ + GV
Sbjct: 100 QYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEYCL 156
Query: 165 YLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQ 219
T +D P+ +V+IG+ +IG+E A+ ++ R + +
Sbjct: 157 ---TSDDIFGYKTSFRKLPQD-MVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE 212
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV-TAANLDNG--TTIPADLVIV 276
+ +++ + + + + V+ +K + ++ + +G +I + V++
Sbjct: 213 D---QDIVNTLLSIL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVL 266
Query: 277 GIGTVLNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
G G+ ++ + +VV+E ++TN+P V+A GD
Sbjct: 267 AAGRRPVIPEGAREIGLSIS-KTGIVVDETMKTNIPNVFATGDANGLA 313
Score = 91.5 bits (228), Expect = 4e-19
Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 25/228 (10%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
+ + KG I D +K +G + + +A+G+ + GV
Sbjct: 100 QYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEYCL 156
Query: 717 YLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQ 771
T +D P+ +V+IG+ +IG+E A+ ++ R + +
Sbjct: 157 ---TSDDIFGYKTSFRKLPQD-MVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE 212
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV-TAANLDNG--TTIPADLVIV 828
+ +++ + + + + V+ +K + ++ + +G +I + V++
Sbjct: 213 D---QDIVNTLLSIL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVL 266
Query: 829 GIGTVLNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
G G+ ++ + +VV+E ++TN+P V+A GD
Sbjct: 267 AAGRRPVIPEGAREIGLSIS-KTGIVVDETMKTNIPNVFATGDANGLA 313
Score = 91.5 bits (228), Expect = 4e-19
Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 25/228 (10%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
+ + KG I D +K +G + + +A+G+ + GV
Sbjct: 100 QYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEYCL 156
Query: 1188 YLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQ 1242
T +D P+ +V+IG+ +IG+E A+ ++ R + +
Sbjct: 157 ---TSDDIFGYKTSFRKLPQD-MVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE 212
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV-TAANLDNG--TTIPADLVIV 1299
+ +++ + + + + V+ +K + ++ + +G +I + V++
Sbjct: 213 D---QDIVNTLLSIL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVL 266
Query: 1300 GIGTVLNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
G G+ ++ + +VV+E ++TN+P V+A GD
Sbjct: 267 AAGRRPVIPEGAREIGLSIS-KTGIVVDETMKTNIPNVFATGDANGLA 313
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 91.5 bits (228), Expect = 4e-19
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGVNK-- 162
+D + K D + + + G + + I +ATG PR +Q G +
Sbjct: 115 QDRKVKYFNIKASFVDE--HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 172
Query: 163 -----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 213
+F+L+ P +V+G+S++ +E CA + TV+ R
Sbjct: 173 ITSDDIFWLKES-----------PGK-TLVVGASYVALE----CAGFLTGIGLDTTVMMR 216
Query: 214 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 267
F + ++ +T+ ES G +F+ S +K N +
Sbjct: 217 SIPLRGFDQ----QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKED 272
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDI 319
T D V+ IG V T L+ G+ N + + ++V+ T+VP +YA GD+
Sbjct: 273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
Score = 91.5 bits (228), Expect = 4e-19
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGVNK-- 714
+D + K D + + + G + + I +ATG PR +Q G +
Sbjct: 115 QDRKVKYFNIKASFVDE--HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 172
Query: 715 -----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 765
+F+L+ P +V+G+S++ +E CA + TV+ R
Sbjct: 173 ITSDDIFWLKES-----------PGK-TLVVGASYVALE----CAGFLTGIGLDTTVMMR 216
Query: 766 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 819
F + ++ +T+ ES G +F+ S +K N +
Sbjct: 217 SIPLRGFDQ----QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKED 272
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDI 871
T D V+ IG V T L+ G+ N + + ++V+ T+VP +YA GD+
Sbjct: 273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
Score = 91.5 bits (228), Expect = 4e-19
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGVNK-- 1185
+D + K D + + + G + + I +ATG PR +Q G +
Sbjct: 115 QDRKVKYFNIKASFVDE--HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 172
Query: 1186 -----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 1236
+F+L+ P +V+G+S++ +E CA + TV+ R
Sbjct: 173 ITSDDIFWLKES-----------PGK-TLVVGASYVALE----CAGFLTGIGLDTTVMMR 216
Query: 1237 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 1290
F + ++ +T+ ES G +F+ S +K N +
Sbjct: 217 SIPLRGFDQ----QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKED 272
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDI 1342
T D V+ IG V T L+ G+ N + + ++V+ T+VP +YA GD+
Sbjct: 273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 91.4 bits (228), Expect = 4e-19
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
K N + + +G + + ++ DG +D + LA+GS P I A
Sbjct: 110 KANGVTLFEGHGKLLAG--KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQD-- 165
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 223
V+ + P + VIG+ IG+E + A VTV+ +
Sbjct: 166 --VIVDSTGALDFQNVPGK-LGVIGAGVIGLELGSVWARLGAEVTVL-----EAMDKFLP 217
Query: 224 ---KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 279
++V + K+ +G+K ++ A V+ E K V + + + D +IV +G
Sbjct: 218 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277
Query: 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
T L GV L+ + + V++Y T+VPGVYA GD+
Sbjct: 278 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
Score = 91.4 bits (228), Expect = 4e-19
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
K N + + +G + + ++ DG +D + LA+GS P I A
Sbjct: 110 KANGVTLFEGHGKLLAG--KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQD-- 165
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 775
V+ + P + VIG+ IG+E + A VTV+ +
Sbjct: 166 --VIVDSTGALDFQNVPGK-LGVIGAGVIGLELGSVWARLGAEVTVL-----EAMDKFLP 217
Query: 776 ---KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 831
++V + K+ +G+K ++ A V+ E K V + + + D +IV +G
Sbjct: 218 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277
Query: 832 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
T L GV L+ + + V++Y T+VPGVYA GD+
Sbjct: 278 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
Score = 91.4 bits (228), Expect = 4e-19
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
K N + + +G + + ++ DG +D + LA+GS P I A
Sbjct: 110 KANGVTLFEGHGKLLAG--KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQD-- 165
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 1246
V+ + P + VIG+ IG+E + A VTV+ +
Sbjct: 166 --VIVDSTGALDFQNVPGK-LGVIGAGVIGLELGSVWARLGAEVTVL-----EAMDKFLP 217
Query: 1247 ---KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 1302
++V + K+ +G+K ++ A V+ E K V + + + D +IV +G
Sbjct: 218 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277
Query: 1303 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
T L GV L+ + + V++Y T+VPGVYA GD+
Sbjct: 278 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 89.9 bits (224), Expect = 1e-18
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
K N + +++G + K++++ G + LATGS P + V+
Sbjct: 104 KGNGVELLRGFARLVG----PKEVEV-GGERYGAKSLILATGSEPLELKGFPFGEDVW-- 156
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--- 223
A + + P+ ++VIG +G+E VT++ + +
Sbjct: 157 -DSTRALKVEEGL-PKR-LLVIGGGAVGLELGQVYRRLGAEVTLI-----EYMPEILPQG 208
Query: 224 -KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIVGIG 279
E + + E +G++ K +EK + V + G + D V+V +G
Sbjct: 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268
Query: 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
T L + GV+++ + + VN +ET+VPGVYA GD A P
Sbjct: 269 RKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314
Score = 89.9 bits (224), Expect = 1e-18
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
K N + +++G + K++++ G + LATGS P + V+
Sbjct: 104 KGNGVELLRGFARLVG----PKEVEV-GGERYGAKSLILATGSEPLELKGFPFGEDVW-- 156
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--- 775
A + + P+ ++VIG +G+E VT++ + +
Sbjct: 157 -DSTRALKVEEGL-PKR-LLVIGGGAVGLELGQVYRRLGAEVTLI-----EYMPEILPQG 208
Query: 776 -KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIVGIG 831
E + + E +G++ K +EK + V + G + D V+V +G
Sbjct: 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268
Query: 832 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
T L + GV+++ + + VN +ET+VPGVYA GD A P
Sbjct: 269 RKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314
Score = 89.9 bits (224), Expect = 1e-18
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
K N + +++G + K++++ G + LATGS P + V+
Sbjct: 104 KGNGVELLRGFARLVG----PKEVEV-GGERYGAKSLILATGSEPLELKGFPFGEDVW-- 156
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--- 1246
A + + P+ ++VIG +G+E VT++ + +
Sbjct: 157 -DSTRALKVEEGL-PKR-LLVIGGGAVGLELGQVYRRLGAEVTLI-----EYMPEILPQG 208
Query: 1247 -KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIVGIG 1302
E + + E +G++ K +EK + V + G + D V+V +G
Sbjct: 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268
Query: 1303 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
T L + GV+++ + + VN +ET+VPGVYA GD A P
Sbjct: 269 RKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 89.1 bits (222), Expect = 2e-18
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVF- 164
K N + ++KG+ D+ N ++ D + F +ATGS P + N++
Sbjct: 102 KGNKVEIVKGEAYFVDA--NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159
Query: 165 -----YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV 216
L V P+S +VVIG +IG+E A+ +KV T++
Sbjct: 160 STGALNLGEV-----------PKS-LVVIGGGYIGIELGTAYANFGTKV---TIL----- 199
Query: 217 PFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPA 271
+ K++ I K + KGV+ V A E+ E VT TI A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 272 DLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
D V+V +G NT+ L + G+++ + + V++ T+VP ++A GDI P
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313
Score = 89.1 bits (222), Expect = 2e-18
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVF- 716
K N + ++KG+ D+ N ++ D + F +ATGS P + N++
Sbjct: 102 KGNKVEIVKGEAYFVDA--NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159
Query: 717 -----YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV 768
L V P+S +VVIG +IG+E A+ +KV T++
Sbjct: 160 STGALNLGEV-----------PKS-LVVIGGGYIGIELGTAYANFGTKV---TIL----- 199
Query: 769 PFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPA 823
+ K++ I K + KGV+ V A E+ E VT TI A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 824 DLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
D V+V +G NT+ L + G+++ + + V++ T+VP ++A GDI P
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313
Score = 89.1 bits (222), Expect = 2e-18
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVF- 1187
K N + ++KG+ D+ N ++ D + F +ATGS P + N++
Sbjct: 102 KGNKVEIVKGEAYFVDA--NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159
Query: 1188 -----YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV 1239
L V P+S +VVIG +IG+E A+ +KV T++
Sbjct: 160 STGALNLGEV-----------PKS-LVVIGGGYIGIELGTAYANFGTKV---TIL----- 199
Query: 1240 PFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPA 1294
+ K++ I K + KGV+ V A E+ E VT TI A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 1295 DLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
D V+V +G NT+ L + G+++ + + V++ T+VP ++A GDI P
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 83.7 bits (208), Expect = 2e-17
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 185 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
+++I + + + G E+ + I +K + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWSTDLVIATNG---------NELSQTIMDELSNKNIPVIT 199
Query: 244 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN 303
++ + + + E + +G I + +++ G EL V++
Sbjct: 200 ES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVID 257
Query: 304 EYLETNVPGVYAGGDIAYAPLHS 326
++ T+ +Y G+ S
Sbjct: 258 DFGRTSEKNIYLAGETTTQGPSS 280
Score = 83.7 bits (208), Expect = 2e-17
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 737 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
+++I + + + G E+ + I +K + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWSTDLVIATNG---------NELSQTIMDELSNKNIPVIT 199
Query: 796 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN 855
++ + + + E + +G I + +++ G EL V++
Sbjct: 200 ES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVID 257
Query: 856 EYLETNVPGVYAGGDIAYAPLHS 878
++ T+ +Y G+ S
Sbjct: 258 DFGRTSEKNIYLAGETTTQGPSS 280
Score = 83.7 bits (208), Expect = 2e-17
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 1208 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
+++I + + + G E+ + I +K + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWSTDLVIATNG---------NELSQTIMDELSNKNIPVIT 199
Query: 1267 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN 1326
++ + + + E + +G I + +++ G EL V++
Sbjct: 200 ES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVID 257
Query: 1327 EYLETNVPGVYAGGDIAYAPLHS 1349
++ T+ +Y G+ S
Sbjct: 258 DFGRTSEKNIYLAGETTTQGPSS 280
Score = 29.4 bits (67), Expect = 8.4
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 24/110 (21%)
Query: 47 IVVGGGPSGAT-CVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF 105
I++ + + ++ L T+ N L + +I+ +E
Sbjct: 150 IIISENEDHTLHMTKLVYN--WSTDLVIATNGNEL--------------SQTIM---DEL 190
Query: 106 YKDNDIHVIKG--KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
N I VI + + + KK++ G I+ ++
Sbjct: 191 SNKN-IPVITESIRTLQGEGG-YLKKVEFHSGLRIERAGGFIVPTFFRPN 238
Score = 29.4 bits (67), Expect = 8.4
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 24/110 (21%)
Query: 599 IVVGGGPSGAT-CVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF 657
I++ + + ++ L T+ N L + +I+ +E
Sbjct: 150 IIISENEDHTLHMTKLVYN--WSTDLVIATNGNEL--------------SQTIM---DEL 190
Query: 658 YKDNDIHVIKG--KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
N I VI + + + KK++ G I+ ++
Sbjct: 191 SNKN-IPVITESIRTLQGEGG-YLKKVEFHSGLRIERAGGFIVPTFFRPN 238
Score = 29.4 bits (67), Expect = 8.4
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 24/110 (21%)
Query: 1070 IVVGGGPSGAT-CVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF 1128
I++ + + ++ L T+ N L + +I+ +E
Sbjct: 150 IIISENEDHTLHMTKLVYN--WSTDLVIATNGNEL--------------SQTIM---DEL 190
Query: 1129 YKDNDIHVIKG--KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
N I VI + + + KK++ G I+ ++
Sbjct: 191 SNKN-IPVITESIRTLQGEGG-YLKKVEFHSGLRIERAGGFIVPTFFRPN 238
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG,
protein structure initiative, PSI, ferredoxin, FES,
[2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP:
b.33.1.1 PDB: 2q3w_A 1sjg_A
Length = 111
Score = 77.7 bits (192), Expect = 3e-17
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 965 GMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM 1024
G + L E + A C H L +GS G + C H FN TG + P
Sbjct: 24 GTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDD 82
Query: 1025 DSLPCYKVTIQNDD 1038
+L Y V ++ DD
Sbjct: 83 AALAEYPVEVKGDD 96
Score = 77.3 bits (191), Expect = 4e-17
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+ A C H L +GS G + C H FN TG + P +L Y V ++ D
Sbjct: 37 VKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGD 95
Query: 567 D 567
D
Sbjct: 96 D 96
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 85.2 bits (212), Expect = 4e-17
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 162
K N + + G I+ N+ DG ID I +ATGS D
Sbjct: 108 KQNKVVHVNGYGKITGK--NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165
Query: 163 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 214
V L+ V PE +VVIG+ IG+E + + V T V
Sbjct: 166 VSSTGALSLKKV-----------PEK-MVVIGAGVIGVELGSVWQRLGADV---TAV--- 207
Query: 215 AVPFQESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKND--VTAANLDNG- 266
F +G E+ + ++ + +G KF + V+ K V+ G
Sbjct: 208 --EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 267 -TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
I D+++V IG T L + G+EL+ + + VN +T +P +YA GD+ P
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
Score = 85.2 bits (212), Expect = 4e-17
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 714
K N + + G I+ N+ DG ID I +ATGS D
Sbjct: 108 KQNKVVHVNGYGKITGK--NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165
Query: 715 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 766
V L+ V PE +VVIG+ IG+E + + V T V
Sbjct: 166 VSSTGALSLKKV-----------PEK-MVVIGAGVIGVELGSVWQRLGADV---TAV--- 207
Query: 767 AVPFQESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKND--VTAANLDNG- 818
F +G E+ + ++ + +G KF + V+ K V+ G
Sbjct: 208 --EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 819 -TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
I D+++V IG T L + G+EL+ + + VN +T +P +YA GD+ P
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
Score = 85.2 bits (212), Expect = 4e-17
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 1185
K N + + G I+ N+ DG ID I +ATGS D
Sbjct: 108 KQNKVVHVNGYGKITGK--NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165
Query: 1186 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 1237
V L+ V PE +VVIG+ IG+E + + V T V
Sbjct: 166 VSSTGALSLKKV-----------PEK-MVVIGAGVIGVELGSVWQRLGADV---TAV--- 207
Query: 1238 AVPFQESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKND--VTAANLDNG- 1289
F +G E+ + ++ + +G KF + V+ K V+ G
Sbjct: 208 --EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 1290 -TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
I D+++V IG T L + G+EL+ + + VN +T +P +YA GD+ P
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 85.3 bits (212), Expect = 4e-17
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
++ + + K G ++ + +ATG PR G
Sbjct: 141 REKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYC 197
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAV 216
+ +F L P +V+G+S++ +E A + VTV+ R +
Sbjct: 198 ISSDDLFSLPYC-----------PGK-TLVVGASYVALECAGFLAGIGLD-VTVMVRSIL 244
Query: 217 --PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-------VTAANLDNGT 267
F + ++ +I + E G+KF+ + E+ E + N +
Sbjct: 245 LRGFDQ----DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDI 319
+ V++ IG T L+ GV++N + V + +TNVP +YA GDI
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
Score = 85.3 bits (212), Expect = 4e-17
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
++ + + K G ++ + +ATG PR G
Sbjct: 141 REKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYC 197
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAV 768
+ +F L P +V+G+S++ +E A + VTV+ R +
Sbjct: 198 ISSDDLFSLPYC-----------PGK-TLVVGASYVALECAGFLAGIGLD-VTVMVRSIL 244
Query: 769 --PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-------VTAANLDNGT 819
F + ++ +I + E G+KF+ + E+ E + N +
Sbjct: 245 LRGFDQ----DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDI 871
+ V++ IG T L+ GV++N + V + +TNVP +YA GDI
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
Score = 85.3 bits (212), Expect = 4e-17
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
++ + + K G ++ + +ATG PR G
Sbjct: 141 REKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYC 197
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAV 1239
+ +F L P +V+G+S++ +E A + VTV+ R +
Sbjct: 198 ISSDDLFSLPYC-----------PGK-TLVVGASYVALECAGFLAGIGLD-VTVMVRSIL 244
Query: 1240 --PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-------VTAANLDNGT 1290
F + ++ +I + E G+KF+ + E+ E + N +
Sbjct: 245 LRGFDQ----DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDI 1342
+ V++ IG T L+ GV++N + V + +TNVP +YA GDI
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 85.1 bits (211), Expect = 6e-17
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
+DN + + K + +E +I ++ T KI LATG P + G
Sbjct: 217 RDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYG 273
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV- 216
+ +F L P +VIG+S++ +E A F AS VTV+ R +
Sbjct: 274 ITSDDLFSLPYF-----------PGK-TLVIGASYVALECAGFLASLGGDVTVMVRSILL 321
Query: 217 -PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-----EKND----VTAANLDNG 266
F + ++ E++ E+ GVKF ++ E N + + +G
Sbjct: 322 RGFDQ----QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377
Query: 267 TT--IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
+ VI +G + + GV+L+ VV + +T V VYA GDI
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
Score = 85.1 bits (211), Expect = 6e-17
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
+DN + + K + +E +I ++ T KI LATG P + G
Sbjct: 217 RDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYG 273
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV- 768
+ +F L P +VIG+S++ +E A F AS VTV+ R +
Sbjct: 274 ITSDDLFSLPYF-----------PGK-TLVIGASYVALECAGFLASLGGDVTVMVRSILL 321
Query: 769 -PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-----EKND----VTAANLDNG 818
F + ++ E++ E+ GVKF ++ E N + + +G
Sbjct: 322 RGFDQ----QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377
Query: 819 TT--IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
+ VI +G + + GV+L+ VV + +T V VYA GDI
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
Score = 85.1 bits (211), Expect = 6e-17
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
+DN + + K + +E +I ++ T KI LATG P + G
Sbjct: 217 RDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYG 273
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV- 1239
+ +F L P +VIG+S++ +E A F AS VTV+ R +
Sbjct: 274 ITSDDLFSLPYF-----------PGK-TLVIGASYVALECAGFLASLGGDVTVMVRSILL 321
Query: 1240 -PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-----EKND----VTAANLDNG 1289
F + ++ E++ E+ GVKF ++ E N + + +G
Sbjct: 322 RGFDQ----QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377
Query: 1290 TT--IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
+ VI +G + + GV+L+ VV + +T V VYA GDI
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin,
[2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus
musculus}
Length = 157
Score = 78.5 bits (193), Expect = 8e-17
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 506 NIYAVGTKCSHYGAPLVKGSL----GDGRVRCPWHGACFNIATGDIEDFPGMDSLP---- 557
+A+ +C H G PL G + G + CPWH +ATG+ P
Sbjct: 49 EYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKP 108
Query: 558 ----------CYKVTIQNDDSVVVQARKDELK 579
+ V + N + + V K+ K
Sbjct: 109 KWCSKGVKQRIHTVKVDNGN-IYVTLSKEPFK 139
Score = 78.5 bits (193), Expect = 8e-17
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 977 NIYAVGTKCSHYGAPLVKGSL----GDGRVRCPWHGACFNIATGDIEDFPGMDSLP---- 1028
+A+ +C H G PL G + G + CPWH +ATG+ P
Sbjct: 49 EYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKP 108
Query: 1029 ----------CYKVTIQNDDSVVVQARKDELK 1050
+ V + N + + V K+ K
Sbjct: 109 KWCSKGVKQRIHTVKVDNGN-IYVTLSKEPFK 139
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 83.7 bits (208), Expect = 9e-17
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
K + + V+ G + D K++++ DG I + LATGSS + V
Sbjct: 107 KKHGVKVVHGWAKVLD----GKQVEV-DGQRIQCEHLLLATGSSSVELPMLPLGGPVI-- 159
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAVPFQESLG 223
+ +A +AP P+ +VV+G +IG+E A+ ++V +VV +E +
Sbjct: 160 -SSTEA--LAPKALPQH-LVVVGGGYIGLELGIAYRKLGAQV---SVV-----EARERIL 207
Query: 224 ----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
E+ + + + G+ + +V +E + + AD V+V +G
Sbjct: 208 PTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 265
Query: 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
T + +++N A+ ++E +T++ V+A GD+A P
Sbjct: 266 RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 310
Score = 83.7 bits (208), Expect = 9e-17
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
K + + V+ G + D K++++ DG I + LATGSS + V
Sbjct: 107 KKHGVKVVHGWAKVLD----GKQVEV-DGQRIQCEHLLLATGSSSVELPMLPLGGPVI-- 159
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAVPFQESLG 775
+ +A +AP P+ +VV+G +IG+E A+ ++V +VV +E +
Sbjct: 160 -SSTEA--LAPKALPQH-LVVVGGGYIGLELGIAYRKLGAQV---SVV-----EARERIL 207
Query: 776 ----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
E+ + + + G+ + +V +E + + AD V+V +G
Sbjct: 208 PTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 265
Query: 832 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
T + +++N A+ ++E +T++ V+A GD+A P
Sbjct: 266 RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 310
Score = 83.7 bits (208), Expect = 9e-17
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
K + + V+ G + D K++++ DG I + LATGSS + V
Sbjct: 107 KKHGVKVVHGWAKVLD----GKQVEV-DGQRIQCEHLLLATGSSSVELPMLPLGGPVI-- 159
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAVPFQESLG 1246
+ +A +AP P+ +VV+G +IG+E A+ ++V +VV +E +
Sbjct: 160 -SSTEA--LAPKALPQH-LVVVGGGYIGLELGIAYRKLGAQV---SVV-----EARERIL 207
Query: 1247 ----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
E+ + + + G+ + +V +E + + AD V+V +G
Sbjct: 208 PTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 265
Query: 1303 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
T + +++N A+ ++E +T++ V+A GD+A P
Sbjct: 266 RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 310
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 83.7 bits (208), Expect = 1e-16
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 51/246 (20%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--------TSIDFTKIYLATGSSPRTISQA- 157
K N + KG D + ++ DG +D I +ATGS
Sbjct: 107 KKNKVTYYKGNGSFEDE--TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
Query: 158 -DGVNKV-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSV 208
D V L+ + P+ + +IG IG+E + + SKV
Sbjct: 165 IDEEKIVSSTGALSLKEI-----------PKR-LTIIGGGIIGLEMGSVYSRLGSKV--- 209
Query: 209 TVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN---DVTAA 261
TVV FQ +G EV + K + +G+ F + V S ++N+ ++
Sbjct: 210 TVV-----EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE 264
Query: 262 NLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
+ + A++++V +G L + G+E++ + +V+++ + P + G
Sbjct: 265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVG 324
Query: 318 DIAYAP 323
D+ + P
Sbjct: 325 DVTFGP 330
Score = 83.7 bits (208), Expect = 1e-16
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 51/246 (20%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--------TSIDFTKIYLATGSSPRTISQA- 709
K N + KG D + ++ DG +D I +ATGS
Sbjct: 107 KKNKVTYYKGNGSFEDE--TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
Query: 710 -DGVNKV-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSV 760
D V L+ + P+ + +IG IG+E + + SKV
Sbjct: 165 IDEEKIVSSTGALSLKEI-----------PKR-LTIIGGGIIGLEMGSVYSRLGSKV--- 209
Query: 761 TVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN---DVTAA 813
TVV FQ +G EV + K + +G+ F + V S ++N+ ++
Sbjct: 210 TVV-----EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE 264
Query: 814 NLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
+ + A++++V +G L + G+E++ + +V+++ + P + G
Sbjct: 265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVG 324
Query: 870 DIAYAP 875
D+ + P
Sbjct: 325 DVTFGP 330
Score = 83.7 bits (208), Expect = 1e-16
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 51/246 (20%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--------TSIDFTKIYLATGSSPRTISQA- 1180
K N + KG D + ++ DG +D I +ATGS
Sbjct: 107 KKNKVTYYKGNGSFEDE--TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
Query: 1181 -DGVNKV-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSV 1231
D V L+ + P+ + +IG IG+E + + SKV
Sbjct: 165 IDEEKIVSSTGALSLKEI-----------PKR-LTIIGGGIIGLEMGSVYSRLGSKV--- 209
Query: 1232 TVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN---DVTAA 1284
TVV FQ +G EV + K + +G+ F + V S ++N+ ++
Sbjct: 210 TVV-----EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE 264
Query: 1285 NLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
+ + A++++V +G L + G+E++ + +V+++ + P + G
Sbjct: 265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVG 324
Query: 1341 DIAYAP 1346
D+ + P
Sbjct: 325 DVTFGP 330
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 83.0 bits (206), Expect = 2e-16
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 51/246 (20%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPRTI 154
K + VI+G D + ++ L G + F +A GS +
Sbjct: 106 KSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163
Query: 155 SQADGVNKVF------YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKV 205
++ L+ V P +++IG IG+E + S++
Sbjct: 164 PFIPEDPRIIDSSGALALKEV-----------PGK-LLIIGGGIIGLEMGTVYSTLGSRL 211
Query: 206 KSVTVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTA 260
VV + L +++ + K E + ++ + E E VT
Sbjct: 212 ---DVV-----EMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF 263
Query: 261 ANLDNGT-TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
+ D V+V G N + + GV + + + V++ + TNVP +YA G
Sbjct: 264 EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIG 323
Query: 318 DIAYAP 323
DI P
Sbjct: 324 DIVGQP 329
Score = 83.0 bits (206), Expect = 2e-16
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 51/246 (20%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPRTI 706
K + VI+G D + ++ L G + F +A GS +
Sbjct: 106 KSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163
Query: 707 SQADGVNKVF------YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKV 757
++ L+ V P +++IG IG+E + S++
Sbjct: 164 PFIPEDPRIIDSSGALALKEV-----------PGK-LLIIGGGIIGLEMGTVYSTLGSRL 211
Query: 758 KSVTVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTA 812
VV + L +++ + K E + ++ + E E VT
Sbjct: 212 ---DVV-----EMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF 263
Query: 813 ANLDNGT-TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
+ D V+V G N + + GV + + + V++ + TNVP +YA G
Sbjct: 264 EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIG 323
Query: 870 DIAYAP 875
DI P
Sbjct: 324 DIVGQP 329
Score = 83.0 bits (206), Expect = 2e-16
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 51/246 (20%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPRTI 1177
K + VI+G D + ++ L G + F +A GS +
Sbjct: 106 KSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163
Query: 1178 SQADGVNKVF------YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKV 1228
++ L+ V P +++IG IG+E + S++
Sbjct: 164 PFIPEDPRIIDSSGALALKEV-----------PGK-LLIIGGGIIGLEMGTVYSTLGSRL 211
Query: 1229 KSVTVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTA 1283
VV + L +++ + K E + ++ + E E VT
Sbjct: 212 ---DVV-----EMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF 263
Query: 1284 ANLDNGT-TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
+ D V+V G N + + GV + + + V++ + TNVP +YA G
Sbjct: 264 EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIG 323
Query: 1341 DIAYAP 1346
DI P
Sbjct: 324 DIVGQP 329
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 82.2 bits (204), Expect = 4e-16
Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 46/234 (19%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
+D + I G DS + KL+ G T +A G PR G
Sbjct: 119 RDKKVEYINGLGSFVDS--HTLLAKLKSGERT-ITAQTFVIAVGGRPR-YPDIPGAVEYG 174
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 213
+ +F L P +V+G+ +IG+E CA +K TV+ R
Sbjct: 175 ITSDDLFSLDRE-----------PGK-TLVVGAGYIGLE----CAGFLKGLGYEPTVMVR 218
Query: 214 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 267
V F + ++ E + E +G+ F+ K S EK + + +
Sbjct: 219 SIVLRGFDQ----QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEES 274
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
D V+ IG + L GV + + + V+ TNV +YA GDI
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDI 327
Score = 82.2 bits (204), Expect = 4e-16
Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 46/234 (19%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
+D + I G DS + KL+ G T +A G PR G
Sbjct: 119 RDKKVEYINGLGSFVDS--HTLLAKLKSGERT-ITAQTFVIAVGGRPR-YPDIPGAVEYG 174
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 765
+ +F L P +V+G+ +IG+E CA +K TV+ R
Sbjct: 175 ITSDDLFSLDRE-----------PGK-TLVVGAGYIGLE----CAGFLKGLGYEPTVMVR 218
Query: 766 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 819
V F + ++ E + E +G+ F+ K S EK + + +
Sbjct: 219 SIVLRGFDQ----QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEES 274
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
D V+ IG + L GV + + + V+ TNV +YA GDI
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDI 327
Score = 82.2 bits (204), Expect = 4e-16
Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 46/234 (19%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
+D + I G DS + KL+ G T +A G PR G
Sbjct: 119 RDKKVEYINGLGSFVDS--HTLLAKLKSGERT-ITAQTFVIAVGGRPR-YPDIPGAVEYG 174
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 1236
+ +F L P +V+G+ +IG+E CA +K TV+ R
Sbjct: 175 ITSDDLFSLDRE-----------PGK-TLVVGAGYIGLE----CAGFLKGLGYEPTVMVR 218
Query: 1237 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 1290
V F + ++ E + E +G+ F+ K S EK + + +
Sbjct: 219 SIVLRGFDQ----QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEES 274
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
D V+ IG + L GV + + + V+ TNV +YA GDI
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDI 327
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 81.4 bits (202), Expect = 6e-16
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 43/234 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 162
K N + KG+ + + ++ DG ++ K +ATGS P + D
Sbjct: 104 KKNKVTYYKGEGSFETA--HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161
Query: 163 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 214
+ L V P++ +VVIG IG+E + A ++V TVV
Sbjct: 162 LSSTGALALPRV-----------PKT-MVVIGGGVIGLELGSVWARLGAEV---TVV--- 203
Query: 215 AVPFQESLG----KEVGERITKLFESK-GVKFVMKANVSSFEKNEKN-DVTAANLDNGT- 267
F ++V + +KF+ V N + + +
Sbjct: 204 --EFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRE 261
Query: 268 TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
T+ + ++V +G T L D V N + V + ++ ET++P VYA GD+
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
Score = 81.4 bits (202), Expect = 6e-16
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 43/234 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 714
K N + KG+ + + ++ DG ++ K +ATGS P + D
Sbjct: 104 KKNKVTYYKGEGSFETA--HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161
Query: 715 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 766
+ L V P++ +VVIG IG+E + A ++V TVV
Sbjct: 162 LSSTGALALPRV-----------PKT-MVVIGGGVIGLELGSVWARLGAEV---TVV--- 203
Query: 767 AVPFQESLG----KEVGERITKLFESK-GVKFVMKANVSSFEKNEKN-DVTAANLDNGT- 819
F ++V + +KF+ V N + + +
Sbjct: 204 --EFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRE 261
Query: 820 TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
T+ + ++V +G T L D V N + V + ++ ET++P VYA GD+
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
Score = 81.4 bits (202), Expect = 6e-16
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 43/234 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 1185
K N + KG+ + + ++ DG ++ K +ATGS P + D
Sbjct: 104 KKNKVTYYKGEGSFETA--HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161
Query: 1186 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 1237
+ L V P++ +VVIG IG+E + A ++V TVV
Sbjct: 162 LSSTGALALPRV-----------PKT-MVVIGGGVIGLELGSVWARLGAEV---TVV--- 203
Query: 1238 AVPFQESLG----KEVGERITKLFESK-GVKFVMKANVSSFEKNEKN-DVTAANLDNGT- 1290
F ++V + +KF+ V N + + +
Sbjct: 204 --EFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRE 261
Query: 1291 TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
T+ + ++V +G T L D V N + V + ++ ET++P VYA GD+
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 75.0 bits (185), Expect = 3e-14
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 120 ISDSELNEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVED 171
+ + + + G + +A G PR + Q ++ V+Y V+
Sbjct: 100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY--AVKS 157
Query: 172 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 231
+ VV++G ++ SVT+V RG FQ + +
Sbjct: 158 VEDFKGK-----RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGH--GKTAHEVE 209
Query: 232 KLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLD 288
+ + + ++ V+S E++ V + D T+ AD +++ IG N L
Sbjct: 210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269
Query: 289 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+EL A+VV+ +++T+V G+YA GDIAY P
Sbjct: 270 RWDLELYE-NALVVDSHMKTSVDGLYAAGDIAYYP 303
Score = 75.0 bits (185), Expect = 3e-14
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVED 723
+ + + + G + +A G PR + Q ++ V+Y V+
Sbjct: 100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY--AVKS 157
Query: 724 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 783
+ VV++G ++ SVT+V RG FQ + +
Sbjct: 158 VEDFKGK-----RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGH--GKTAHEVE 209
Query: 784 KLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLD 840
+ + + ++ V+S E++ V + D T+ AD +++ IG N L
Sbjct: 210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269
Query: 841 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+EL A+VV+ +++T+V G+YA GDIAY P
Sbjct: 270 RWDLELYE-NALVVDSHMKTSVDGLYAAGDIAYYP 303
Score = 75.0 bits (185), Expect = 3e-14
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVED 1194
+ + + + G + +A G PR + Q ++ V+Y V+
Sbjct: 100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY--AVKS 157
Query: 1195 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 1254
+ VV++G ++ SVT+V RG FQ + +
Sbjct: 158 VEDFKGK-----RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGH--GKTAHEVE 209
Query: 1255 KLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLD 1311
+ + + ++ V+S E++ V + D T+ AD +++ IG N L
Sbjct: 210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269
Query: 1312 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+EL A+VV+ +++T+V G+YA GDIAY P
Sbjct: 270 RWDLELYE-NALVVDSHMKTSVDGLYAAGDIAYYP 303
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 73.3 bits (181), Expect = 7e-14
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 241
VV IG G AA + VK+VT++ + + + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYM-----PKYMCENAYVQE----IKKRNIPY 207
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 296
+M A V+ + K VT + TT I D V + +G + T++L GV+L+
Sbjct: 208 IMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDE 266
Query: 297 QKAVVVNEYLETNVPGVYAGGDIAYAPL 324
+ +VV+ T+VPGVYA GD+
Sbjct: 267 RGYIVVDSRQRTSVPGVYAAGDVTSGNF 294
Score = 73.3 bits (181), Expect = 7e-14
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 793
VV IG G AA + VK+VT++ + + + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYM-----PKYMCENAYVQE----IKKRNIPY 207
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 848
+M A V+ + K VT + TT I D V + +G + T++L GV+L+
Sbjct: 208 IMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDE 266
Query: 849 QKAVVVNEYLETNVPGVYAGGDIAYAPL 876
+ +VV+ T+VPGVYA GD+
Sbjct: 267 RGYIVVDSRQRTSVPGVYAAGDVTSGNF 294
Score = 73.3 bits (181), Expect = 7e-14
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 1264
VV IG G AA + VK+VT++ + + + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYM-----PKYMCENAYVQE----IKKRNIPY 207
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 1319
+M A V+ + K VT + TT I D V + +G + T++L GV+L+
Sbjct: 208 IMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDE 266
Query: 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
+ +VV+ T+VPGVYA GD+
Sbjct: 267 RGYIVVDSRQRTSVPGVYAAGDVTSGNF 294
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 9e-14
Identities = 122/755 (16%), Positives = 214/755 (28%), Gaps = 287/755 (38%)
Query: 590 LSSGNKDTFIVVGGGPSGATCV-ETLRQNGFTGKLYFITDE---------------NFLP 633
LS G+ + ++V P+ + + L++ F L T+ FL
Sbjct: 11 LSHGSLEHVLLV---PTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 634 YDRVKLSKQLDIKADSILLR-----TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 688
Y + + D +L + + NDIH + K ++ +++ K K
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-LLQENDTTLVKTK----- 120
Query: 689 SIDFTKIYL-ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 747
+ K Y+ A + R + S+
Sbjct: 121 --ELIKNYITARIMAKRPFDK--------------------KS----------NSALF-- 146
Query: 748 EAAAFCASKVKSVTVV-GRGA--VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 804
A + V + G+G F+E L R L+++ V
Sbjct: 147 RAVG--EGNAQLVAIFGGQGNTDDYFEE-L------R--DLYQT------YHVLVGDLI- 188
Query: 805 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET--NV 862
+A L D + +G+ + E+LE N
Sbjct: 189 ----KFSAETLSELIRTTLD-----------AEKVFTQGLN--------ILEWLENPSNT 225
Query: 863 PGV-YAGGDIAYAPLHSFYNKNASIGHYQLAQYH--GRIAALNMVEKKTSLSTIPFFWTM 919
P Y + P+ S IG QLA Y ++ E ++ L
Sbjct: 226 PDKDY----LLSIPI-SC----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKG------- 269
Query: 920 LFGVGFRFAGYAAGHTQVDIVGDLEALKFTA-------YYSNADKVLAILTVGMDPLAAQ 972
A GH+Q +V A+ A ++ + K + +L
Sbjct: 270 -----------ATGHSQ-GLVT---AV-AIAETDSWESFFVSVRKAITVL---------- 303
Query: 973 FAERNIYAVGTKCSHYGAP-------LVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD 1025
F +G +C + P +++ SL + G
Sbjct: 304 F------FIGVRC-YEAYPNTSLPPSILEDSLENN------EGV---------------- 334
Query: 1026 SLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAK---LSSGNKDTFIVVGGGPS----- 1077
P ++I N VQ ++ N LP K +S N +VV G P
Sbjct: 335 --PSPMLSISNLTQEQVQDYVNKT-NS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 1078 -----GATCVETLRQN--GFTG-KLYFITDENFLPYDRVKLSKQLDIKA---DSILLRTE 1126
A L Q+ F+ KL F FLP + + +L+
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFLP-----------VASPFHSHLLVPAS 436
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 1186
+ I D L + + + I +Y T DG +
Sbjct: 437 D-------------LINKD--LVKNNVSF-NAKDIQIP-VY-DT---------FDGSD-- 467
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 1246
LR + +I+ I V I + E K + G G G
Sbjct: 468 --LRVLSG--SISERI-----VDCIIRLPVKWETT--TQFKATHILDFGPGGAS-----G 511
Query: 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
+G + + GV+ ++ + + N +D
Sbjct: 512 --LGVLTHRNKDGTGVRVIV---AGTLDINPDDDY 541
Score = 71.6 bits (175), Expect = 2e-12
Identities = 111/588 (18%), Positives = 181/588 (30%), Gaps = 212/588 (36%)
Query: 38 LSSGNKDTFIVVGGGPSGATCV-ETLRQNGFTGKLYFITDE---------------NFLP 81
LS G+ + ++V P+ + + L++ F L T+ FL
Sbjct: 11 LSHGSLEHVLLV---PTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 82 YDRVKLSKQLDIKADSILLR-----TEEFYKDNDIH-------------VIKGKKII--- 120
Y + + D +L + + NDIH ++K K++I
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 121 --------------SDSEL----NEKKIKL------QDGTSID-FT---KIYLATGSSPR 152
S+S L E +L Q G + D F +Y +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLY----QTYH 181
Query: 153 T-----ISQADGVNKVFYLRTVEDANNIAPH------------ITPESNVVV-IGSSF-- 192
I + +RT DA + TP+ + ++ I S
Sbjct: 182 VLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 193 IGMEAAA----FC----------ASKVKSVTVVGRG---AVPFQ-----ESLGKEVGERI 230
IG+ A S +K T +G AV ES V + I
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD-LVIVGIG------TVLN 283
T LF GV+ +S + +L+N +P+ L I + V
Sbjct: 301 TVLFFI-GVRCYEAYPNTSLP----PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 284 TN-YL-DGKGVEL---NGQKAVVV----------NEYLE----------TNVP------- 311
TN +L GK VE+ NG K +VV N L + +P
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 312 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGV 371
+A +P HS AS + + N+ + IP + T
Sbjct: 416 FSNRFLPVA-SPFHSHLLVPAS------DLINKDLVKNNVSFNAKDIQ-IPVYDT----- 462
Query: 372 GFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLA--ILTVGMD-PLAAQF-AEQVLE 427
F G DL L + + + I+ + + QF A +L+
Sbjct: 463 ---FDGS-----------DLRVLS-----GSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 428 F-P-----YSSLPHSH---RCLGVVLGKLDYHGTITISPNSPSVSFLQ 466
F P L H + + V++ GT+ I+P+ F Q
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVA-----GTLDINPDDD-YGFKQ 545
Score = 68.9 bits (168), Expect = 1e-11
Identities = 122/682 (17%), Positives = 202/682 (29%), Gaps = 226/682 (33%)
Query: 435 HSHRCLGVVLGKLDYHGTITISPNSPSVSFLQRTQWL----TSILPLIGSSFSQSTLAIS 490
+S R L L HG++ P+ SF +Q L ILP F+ +
Sbjct: 4 YSTRPL--TLS----HGSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTT 56
Query: 491 PASSTPKTL---AQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN---IAT 544
PA K L + + K + ++ L + F +
Sbjct: 57 PAELVGKFLGYVSSLVEPS------KVGQF-DQVLNLCLTE-----------FENCYLEG 98
Query: 545 GDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKN-------KKRKLPMAKLS------ 591
DI L ++ + K+ +KN KR S
Sbjct: 99 NDIHALAA--KLL-------QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 592 -SGNKDTFIVVGG-GPSGATCVETLRQNGFTGKLY-----FITDENFLPYDRVKLSKQLD 644
GN + GG G + E LR LY + D + + LS+ +
Sbjct: 150 GEGNAQLVAIFGGQGNTD-DYFEELR------DLYQTYHVLVGD--LIKFSAETLSELIR 200
Query: 645 IKADSILLRTEEFYKDN-DIH-VIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 702
D+ E+ + +I ++ D + YL S
Sbjct: 201 TTLDA-----EKVFTQGLNILEWLENPSNTPDKD-------------------YLL--SI 234
Query: 703 PRTIS-------QADGVNKVFYLRTVE----DANNIAPHITPESNVV--VIGSSFIGM-- 747
P IS Q Y+ T + + ++ + ++ + I
Sbjct: 235 P--ISCPLIGVIQL-----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 748 EAAAFCASKVKSVTV---VG-RG--AVP--------FQESLGKEVGE-------RITKLF 786
+F S K++TV +G R A P ++SL E E I+ L
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGVPSPMLSISNLT 345
Query: 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG-----IGTVLNTNY--- 838
+ + +V K N S ++ V + L NG +LV+ G G LN
Sbjct: 346 QEQVQDYVNKTN-SHLPAGKQ--VEIS-LVNG---AKNLVVSGPPQSLYG--LNLTLRKA 396
Query: 839 -----LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893
LD + + +K N +L P +A +P HS AS
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFL----P-------VA-SPFHSHLLVPAS------DL 438
Query: 894 YHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYS 953
+ + N+ + IP + T F G DL L
Sbjct: 439 INKDLVKNNVSFNAKDIQ-IPVYDT--------FDGS-----------DLRVLS-----G 473
Query: 954 NADKVLA--ILTVGMD-PLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGR-VRCPWHGA 1009
+ + + I+ + + QF +I G + L + DG VR
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK-DGTGVRV----- 527
Query: 1010 CFNIATGDIEDFPGMDSLPCYK 1031
I G ++ D +K
Sbjct: 528 ---IVAGTLD--INPDDDYGFK 544
Score = 67.4 bits (164), Expect = 4e-11
Identities = 114/636 (17%), Positives = 190/636 (29%), Gaps = 204/636 (32%)
Query: 249 SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA------VVV 302
F K D+ T PA+LV +G Y+ VE + + +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLG------YVSSL-VEPSKVGQFDQVLNLCL 88
Query: 303 NE----YLETNVPGVYAGGDIAYAPLHSF------------YNKNASIGHYQLAQYHGRI 346
E YLE N DI H+ I +Y RI
Sbjct: 89 TEFENCYLEGN--------DI-----HALAAKLLQENDTTLVKTKELIKNY----ITARI 131
Query: 347 AALNMVEKKTS--L------STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTA 398
A +KK++ L +FG G G+T D +L L +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLV--AIFG-GQ-------GNTD-DYFEELRDL-YQT 179
Query: 399 YYSNADKVLAILTVGMDPLAAQFAEQVLEFPYSSLPHSHRCLGVVLGK-LDYHGTITISP 457
Y+ ++ +F+ + L L + V + L+ +
Sbjct: 180 YHVLVGDLI------------KFSAETLS----ELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 458 NSPSVSFLQRTQWLTSI---LPLIG-SSFSQSTLAISPASSTPKTLA---QSTTSNIYAV 510
N+P + L SI PLIG + + TP L + T + +
Sbjct: 224 NTPDKDY------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 511 ---------GTKCSHYGAPLVKG-----SLGDGRVRCPWHGA--CFNIATGDIEDF-PGM 553
+ S + + + K +G VRC + A ++ +ED
Sbjct: 278 VTAVAIAETDSWESFFVS-VRKAITVLFFIG---VRC--YEAYPNTSLPPSILEDSLENN 331
Query: 554 DSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAK---LSSGNKDTFIVVGGGPS---- 606
+ +P ++I N VQ ++ N LP K +S N +VV G P
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKT-NS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 607 ------GATCVETLRQN--GFTG-KLYFITDENFLPYDRVKLSKQLDIKA---DSILLRT 654
A L Q+ F+ KL F FLP + + +L+
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFLP-----------VASPFHSHLLVPA 435
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
+ I D L + + + I +Y T DG +
Sbjct: 436 SD-------------LINKD--LVKNNVSF-NAKDIQIP-VY-DT---------FDGSD- 467
Query: 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 774
LR + +I+ I V I + E K + G G
Sbjct: 468 ---LRVLSG--SISERI-----VDCIIRLPVKWETT--TQFKATHILDFGPGGAS----- 510
Query: 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
G +G + + GV+ ++ + + N +D
Sbjct: 511 G--LGVLTHRNKDGTGVRVIV---AGTLDINPDDDY 541
Score = 67.0 bits (163), Expect = 4e-11
Identities = 100/546 (18%), Positives = 159/546 (29%), Gaps = 211/546 (38%)
Query: 1061 LSSGNKDTFIVVGGGPSGATCV-ETLRQNGFTGKLYFITDE---------------NFLP 1104
LS G+ + ++V P+ + + L++ F L T+ FL
Sbjct: 11 LSHGSLEHVLLV---PTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 1105 YDRVKLSKQLDIKADSILLR-----TEEFYKDNDIH-------------VIKGKKII--- 1143
Y + + D +L + + NDIH ++K K++I
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 1144 --------------SDSEL----NEKKIKL------QDGTSID-FT---KIYLATGSSPR 1175
S+S L E +L Q G + D F +Y +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLY----QTYH 181
Query: 1176 T-----ISQADGVNKVFYLRTVEDANNIAPH------------ITPESNVVV-IGSSF-- 1215
I + +RT DA + TP+ + ++ I S
Sbjct: 182 VLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 1216 IGMEAAA----FC----------ASKVKSVTVVGRG---AVPFQ-----ESLGKEVGERI 1253
IG+ A S +K T +G AV ES V + I
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD-LVIVGIG------TVLN 1306
T LF GV+ +S + +L+N +P+ L I + V
Sbjct: 301 TVLFFI-GVRCYEAYPNTSLP----PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 1307 TN-YL-DGKGVEL---NGQKAVVV----------NEYLE----------TNVP------- 1334
TN +L GK VE+ NG K +VV N L + +P
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 1335 GVYAGGDIAYAPLHSFYNKNA-------------SIGHYQLA--QYH---GRIAALNMVE 1376
+A +P HS A S + Y G ++
Sbjct: 416 FSNRFLPVA-SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS----DLRV 470
Query: 1377 KKTSLS--------TIPFFWTML----------FG------VGFRFAGYAAGHTQVDIV- 1411
S+S +P W FG +G G T V ++
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG-TGVRVIV 529
Query: 1412 -GDLEA 1416
G L+
Sbjct: 530 AGTLDI 535
Score = 40.0 bits (93), Expect = 0.007
Identities = 53/352 (15%), Positives = 99/352 (28%), Gaps = 123/352 (34%)
Query: 741 GSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLG-------KEVGERITKLFESKGVK 792
GS GM + SK + V R F+++ G +T F + K
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDV--WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 793 FVMKANVSS--FEKNEKNDVTAANLDNGTTIPA-DLVIVGIGTVLN-TNYLDGKGVELNG 848
+ + N S+ FE + + + +L+ T +
Sbjct: 1683 RI-RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--------- 1732
Query: 849 QKAVVVNEYL-------ETNVPG--VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 899
Q A+ + E + +P +AG HS +G Y A
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAG--------HS-------LGEY---------A 1768
Query: 900 ALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV---GDLEALKFTAYYSNAD 956
AL SL+ V + V++V G
Sbjct: 1769 AL------ASLA----------DV-MSIE--SL----VEVVFYRGMTMQ-VAVPRDELGR 1804
Query: 957 KVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN---- 1012
++ + +AA F++ + V + LV + +N
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-------EI------VNYNVENQ 1851
Query: 1013 --IATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLS 1062
+A GD+ +D++ + N K +K+ + +L
Sbjct: 1852 QYVAAGDLR---ALDTV----TNVLN-------------FIKLQKIDIIELQ 1883
Score = 33.9 bits (77), Expect = 0.50
Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 104/302 (34%)
Query: 552 GMDSLPCYKVTIQNDDSVVVQA---RKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGA 608
GMD L Y S Q R D + + N + GG G
Sbjct: 1632 GMD-L--Y------KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG- 1681
Query: 609 TCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSI--------LLRTEEF--- 657
+ +R+N + F T + K+ K+++ + S L T+ F
Sbjct: 1682 ---KRIREN--YSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQ-FTQP 1734
Query: 658 ---------YKDNDIHVIKGKKIISD-------SELNE--------KKIKLQD------- 686
++ +K K +I S L E + ++
Sbjct: 1735 ALTLMEKAAFE-----DLKSKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFY 1788
Query: 687 -GTSIDFTKIYLATGSS--------PRTISQADGVNKVFYL------RT---VEDAN-NI 727
G ++ G S P ++ + + Y+ RT VE N N+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 728 APHITPESNVVVIGSSFIGMEAAAFCAS--KVKSVTVVGRGAVPFQESLGKE-VGERITK 784
E+ V ++ + K++ + + + Q+SL E V
Sbjct: 1849 ------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDI-----IELQKSLSLEEVEG---H 1894
Query: 785 LF 786
LF
Sbjct: 1895 LF 1896
Score = 33.9 bits (77), Expect = 0.50
Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 104/302 (34%)
Query: 1023 GMDSLPCYKVTIQNDDSVVVQA---RKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGA 1079
GMD L Y S Q R D + + N + GG G
Sbjct: 1632 GMD-L--Y------KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG- 1681
Query: 1080 TCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSI--------LLRTEEF--- 1128
+ +R+N + F T + K+ K+++ + S L T+ F
Sbjct: 1682 ---KRIREN--YSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQ-FTQP 1734
Query: 1129 ---------YKDNDIHVIKGKKIISD-------SELNE--------KKIKLQD------- 1157
++ +K K +I S L E + ++
Sbjct: 1735 ALTLMEKAAFE-----DLKSKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFY 1788
Query: 1158 -GTSIDFTKIYLATGSS--------PRTISQADGVNKVFYL------RT---VEDAN-NI 1198
G ++ G S P ++ + + Y+ RT VE N N+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 1199 APHITPESNVVVIGSSFIGMEAAAFCAS--KVKSVTVVGRGAVPFQESLGKE-VGERITK 1255
E+ V ++ + K++ + + + Q+SL E V
Sbjct: 1849 ------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDI-----IELQKSLSLEEVEG---H 1894
Query: 1256 LF 1257
LF
Sbjct: 1895 LF 1896
Score = 30.8 bits (69), Expect = 4.6
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 169 VEDAN-NIAPHITPESNVVVIGSSFIGMEAAAFCAS--KVKSVTVVGRGAVPFQESLGKE 225
VE N N+ E+ V ++ + K++ + + + Q+SL E
Sbjct: 1841 VEIVNYNV------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDI-----IELQKSLSLE 1889
Query: 226 -VGERITKLF 234
V LF
Sbjct: 1890 EVEG---HLF 1896
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 29/212 (13%)
Query: 126 NEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAP 177
+ K+ G + + +A G PR I A G + V+Y V+
Sbjct: 96 DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG-APGEREFEGRGVYY--AVKSKAEFQG 152
Query: 178 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---QESLGKEVGERITKLF 234
V+++G ++ A + +T++ R F + S+ + + K
Sbjct: 153 K-----RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASV-----KELMKAH 201
Query: 235 ESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDGKG 291
E ++ + + E +E+ + + D V++ G + L G
Sbjct: 202 EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ L + + V+ + T++PGVYA GDI P
Sbjct: 262 LALE-KNKIKVDTTMATSIPGVYACGDIVTYP 292
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 29/212 (13%)
Query: 678 NEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAP 729
+ K+ G + + +A G PR I A G + V+Y V+
Sbjct: 96 DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG-APGEREFEGRGVYY--AVKSKAEFQG 152
Query: 730 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---QESLGKEVGERITKLF 786
V+++G ++ A + +T++ R F + S+ + + K
Sbjct: 153 K-----RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASV-----KELMKAH 201
Query: 787 ESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDGKG 843
E ++ + + E +E+ + + D V++ G + L G
Sbjct: 202 EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ L + + V+ + T++PGVYA GDI P
Sbjct: 262 LALE-KNKIKVDTTMATSIPGVYACGDIVTYP 292
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 29/212 (13%)
Query: 1149 NEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAP 1200
+ K+ G + + +A G PR I A G + V+Y V+
Sbjct: 96 DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG-APGEREFEGRGVYY--AVKSKAEFQG 152
Query: 1201 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---QESLGKEVGERITKLF 1257
V+++G ++ A + +T++ R F + S+ + + K
Sbjct: 153 K-----RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASV-----KELMKAH 201
Query: 1258 ESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDGKG 1314
E ++ + + E +E+ + + D V++ G + L G
Sbjct: 202 EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ L + + V+ + T++PGVYA GDI P
Sbjct: 262 LALE-KNKIKVDTTMATSIPGVYACGDIVTYP 292
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)
Query: 116 GKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGS---SPRTISQADGVNK-----VFYL 166
+ + S + + KL ++K + + G+ PR + + + + + Y
Sbjct: 87 EQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKL-ELENAEQYEGKNLHY- 144
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 226
V+D A V ++G ++ A K V+++ R F+ E
Sbjct: 145 -FVDDLQKFAGR-----RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FR---AHE- 193
Query: 227 GERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLN 283
+ L SK V + + +K + + + D +IV G V +
Sbjct: 194 -HSVENLHASK-VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 284 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ G+++ + ++VV +ETN+ G +A GDI
Sbjct: 252 LGPIKNWGLDIE-KNSIVVKSTMETNIEGFFAAGDICTYE 290
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)
Query: 668 GKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGS---SPRTISQADGVNK-----VFYL 718
+ + S + + KL ++K + + G+ PR + + + + + Y
Sbjct: 87 EQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKL-ELENAEQYEGKNLHY- 144
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 778
V+D A V ++G ++ A K V+++ R F+ E
Sbjct: 145 -FVDDLQKFAGR-----RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FR---AHE- 193
Query: 779 GERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLN 835
+ L SK V + + +K + + + D +IV G V +
Sbjct: 194 -HSVENLHASK-VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 836 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ G+++ + ++VV +ETN+ G +A GDI
Sbjct: 252 LGPIKNWGLDIE-KNSIVVKSTMETNIEGFFAAGDICTYE 290
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)
Query: 1139 GKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGS---SPRTISQADGVNK-----VFYL 1189
+ + S + + KL ++K + + G+ PR + + + + + Y
Sbjct: 87 EQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKL-ELENAEQYEGKNLHY- 144
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 1249
V+D A V ++G ++ A K V+++ R F+ E
Sbjct: 145 -FVDDLQKFAGR-----RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FR---AHE- 193
Query: 1250 GERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLN 1306
+ L SK V + + +K + + + D +IV G V +
Sbjct: 194 -HSVENLHASK-VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 1307 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ G+++ + ++VV +ETN+ G +A GDI
Sbjct: 252 LGPIKNWGLDIE-KNSIVVKSTMETNIEGFFAAGDICTYE 290
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 72.7 bits (179), Expect = 4e-13
Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 73/315 (23%)
Query: 47 IVVGGGPSGATC-VETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 93
++VG GP+GA V + R+ F G++ D EN++ + KL+ L
Sbjct: 216 LIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKA 275
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
++ D K + + +E +I+ G + I +ATG+ R
Sbjct: 276 HV-------SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 154 ISQADGV-------NK-V---------FYLRTVEDANNIAPHITPESNVVVIGSSFIGME 196
+ V K V + V VIG G+E
Sbjct: 329 M----NVPGEDQYRTKGVTYCPHCDGPLF---------------KGKRVAVIGGGNSGVE 369
Query: 197 AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNE 254
AA A V+ VT++ + +++ K+ K V ++ A + K +
Sbjct: 370 AAIDLAGIVEHVTLLEFA-----PEMK---ADQVLQDKVRSLKNVDIILNAQTTEV-KGD 420
Query: 255 KNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 309
+ V + + + + V IG + NT++L+G +E N ++++ ET+
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETS 479
Query: 310 VPGVYAGGDIAYAPL 324
V GV+A GD P
Sbjct: 480 VKGVFAAGDCTTVPY 494
Score = 72.7 bits (179), Expect = 4e-13
Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 73/315 (23%)
Query: 599 IVVGGGPSGATC-VETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 645
++VG GP+GA V + R+ F G++ D EN++ + KL+ L
Sbjct: 216 LIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKA 275
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
++ D K + + +E +I+ G + I +ATG+ R
Sbjct: 276 HV-------SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 706 ISQADGV-------NK-V---------FYLRTVEDANNIAPHITPESNVVVIGSSFIGME 748
+ V K V + V VIG G+E
Sbjct: 329 M----NVPGEDQYRTKGVTYCPHCDGPLF---------------KGKRVAVIGGGNSGVE 369
Query: 749 AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNE 806
AA A V+ VT++ + +++ K+ K V ++ A + K +
Sbjct: 370 AAIDLAGIVEHVTLLEFA-----PEMK---ADQVLQDKVRSLKNVDIILNAQTTEV-KGD 420
Query: 807 KNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 861
+ V + + + + V IG + NT++L+G +E N ++++ ET+
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETS 479
Query: 862 VPGVYAGGDIAYAPL 876
V GV+A GD P
Sbjct: 480 VKGVFAAGDCTTVPY 494
Score = 72.7 bits (179), Expect = 4e-13
Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 73/315 (23%)
Query: 1070 IVVGGGPSGATC-VETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 1116
++VG GP+GA V + R+ F G++ D EN++ + KL+ L
Sbjct: 216 LIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKA 275
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
++ D K + + +E +I+ G + I +ATG+ R
Sbjct: 276 HV-------SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 1177 ISQADGV-------NK-V---------FYLRTVEDANNIAPHITPESNVVVIGSSFIGME 1219
+ V K V + V VIG G+E
Sbjct: 329 M----NVPGEDQYRTKGVTYCPHCDGPLF---------------KGKRVAVIGGGNSGVE 369
Query: 1220 AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNE 1277
AA A V+ VT++ + +++ K+ K V ++ A + K +
Sbjct: 370 AAIDLAGIVEHVTLLEFA-----PEMK---ADQVLQDKVRSLKNVDIILNAQTTEV-KGD 420
Query: 1278 KNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 1332
+ V + + + + V IG + NT++L+G +E N ++++ ET+
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETS 479
Query: 1333 VPGVYAGGDIAYAPL 1347
V GV+A GD P
Sbjct: 480 VKGVFAAGDCTTVPY 494
Score = 30.4 bits (69), Expect = 5.5
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 14/110 (12%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGR---GAV---------P-FQESLGKEVGERI 230
+V+++GS G AA + A K ++G G V ++ G+++ +
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGAL 273
Query: 231 TKLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGTTIPADLVIVGIG 279
V + + S + + +G + A +I+ G
Sbjct: 274 KAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATG 323
Score = 30.4 bits (69), Expect = 5.5
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 14/110 (12%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGR---GAV---------P-FQESLGKEVGERI 782
+V+++GS G AA + A K ++G G V ++ G+++ +
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGAL 273
Query: 783 TKLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGTTIPADLVIVGIG 831
V + + S + + +G + A +I+ G
Sbjct: 274 KAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATG 323
Score = 30.4 bits (69), Expect = 5.5
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 14/110 (12%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGR---GAV---------P-FQESLGKEVGERI 1253
+V+++GS G AA + A K ++G G V ++ G+++ +
Sbjct: 214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGAL 273
Query: 1254 TKLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGTTIPADLVIVGIG 1302
V + + S + + +G + A +I+ G
Sbjct: 274 KAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATG 323
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 69.1 bits (170), Expect = 2e-12
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
+ VI +S + + A ++ E L ++GV V
Sbjct: 144 IGVIAASPMAIHHALMLPDWGETTFFTNGIV---------EPDADQHALLAARGV-RVET 193
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA---VV 301
+ + DV L +G +I + + ++++ G + +V
Sbjct: 194 TRIREIAGHA--DVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248
Query: 302 VNEYLETNVPGVYAGGDIA 320
+ +T G++A GD+A
Sbjct: 249 TDPMKQTTARGIFACGDVA 267
Score = 69.1 bits (170), Expect = 2e-12
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
+ VI +S + + A ++ E L ++GV V
Sbjct: 144 IGVIAASPMAIHHALMLPDWGETTFFTNGIV---------EPDADQHALLAARGV-RVET 193
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA---VV 853
+ + DV L +G +I + + ++++ G + +V
Sbjct: 194 TRIREIAGHA--DVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248
Query: 854 VNEYLETNVPGVYAGGDIA 872
+ +T G++A GD+A
Sbjct: 249 TDPMKQTTARGIFACGDVA 267
Score = 69.1 bits (170), Expect = 2e-12
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
+ VI +S + + A ++ E L ++GV V
Sbjct: 144 IGVIAASPMAIHHALMLPDWGETTFFTNGIV---------EPDADQHALLAARGV-RVET 193
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA---VV 1324
+ + DV L +G +I + + ++++ G + +V
Sbjct: 194 TRIREIAGHA--DVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248
Query: 1325 VNEYLETNVPGVYAGGDIA 1343
+ +T G++A GD+A
Sbjct: 249 TDPMKQTTARGIFACGDVA 267
Score = 31.0 bits (71), Expect = 2.7
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 41/163 (25%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGA-----------VP-FQESLGKEVGERITK 232
V++IG S+ G+ AA K++ +V G E+ +
Sbjct: 5 VIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARR 64
Query: 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV---LNTNYLD- 288
E ++ V+ + + +D G A +I+ +G L
Sbjct: 65 QIERYPTIHWVEGRVTDAKGSF--GEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRE 122
Query: 289 --GKGV---------ELNGQKAVVVNEYLETNVPGVYAGGDIA 320
G V EL+ K V+ A +A
Sbjct: 123 RWGSAVFHCPYCHGYELDQGKIGVI------------AASPMA 153
Score = 31.0 bits (71), Expect = 2.7
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 41/163 (25%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGA-----------VP-FQESLGKEVGERITK 784
V++IG S+ G+ AA K++ +V G E+ +
Sbjct: 5 VIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARR 64
Query: 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV---LNTNYLD- 840
E ++ V+ + + +D G A +I+ +G L
Sbjct: 65 QIERYPTIHWVEGRVTDAKGSF--GEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRE 122
Query: 841 --GKGV---------ELNGQKAVVVNEYLETNVPGVYAGGDIA 872
G V EL+ K V+ A +A
Sbjct: 123 RWGSAVFHCPYCHGYELDQGKIGVI------------AASPMA 153
Score = 31.0 bits (71), Expect = 2.7
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 41/163 (25%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGA-----------VP-FQESLGKEVGERITK 1255
V++IG S+ G+ AA K++ +V G E+ +
Sbjct: 5 VIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARR 64
Query: 1256 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV---LNTNYLD- 1311
E ++ V+ + + +D G A +I+ +G L
Sbjct: 65 QIERYPTIHWVEGRVTDAKGSF--GEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRE 122
Query: 1312 --GKGV---------ELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
G V EL+ K V+ A +A
Sbjct: 123 RWGSAVFHCPYCHGYELDQGKIGVI------------AASPMA 153
Score = 31.0 bits (71), Expect = 2.9
Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 23/106 (21%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 107
V+ P L + +F + + A + + T
Sbjct: 146 VIAASPMAIHHALMLPD--WGETTFFTNGI-----VEPDADQHALLAARGVRVETTR--- 195
Query: 108 DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
I I G + L DG SI ++
Sbjct: 196 ---IREIAG----------HADVVLADGRSIALAGLFTQPKLRITV 228
Score = 31.0 bits (71), Expect = 2.9
Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 23/106 (21%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 659
V+ P L + +F + + A + + T
Sbjct: 146 VIAASPMAIHHALMLPD--WGETTFFTNGI-----VEPDADQHALLAARGVRVETTR--- 195
Query: 660 DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
I I G + L DG SI ++
Sbjct: 196 ---IREIAG----------HADVVLADGRSIALAGLFTQPKLRITV 228
Score = 31.0 bits (71), Expect = 2.9
Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 23/106 (21%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 1130
V+ P L + +F + + A + + T
Sbjct: 146 VIAASPMAIHHALMLPD--WGETTFFTNGI-----VEPDADQHALLAARGVRVETTR--- 195
Query: 1131 DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
I I G + L DG SI ++
Sbjct: 196 ---IREIAG----------HADVVLADGRSIALAGLFTQPKLRITV 228
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 69.8 bits (171), Expect = 5e-12
Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 101/333 (30%)
Query: 48 VVGGGPSGATCVETLRQNGFT------------GKL-YFITDENF-LPYD----RVKLSK 89
++G GP+ +C L + G++ G I F LPYD ++L K
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP--QFRLPYDVVNFEIELMK 249
Query: 90 QLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG- 148
L +K + + I+ + L E+ + ++ G
Sbjct: 250 DLGVK----------IICGKSL----SENEITLNTLKEE----------GYKAAFIGIGL 285
Query: 149 ------SSPRTISQADGV-NKVFYLRTV------EDANNIAPHITPESNVVVIGSSFIGM 195
+ ++Q G +L V +P + V+V+G+ G
Sbjct: 286 PEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA---GD 342
Query: 196 EA--AAFCASKV--KSVTVVGRG------AVPFQESLGKEVGERITKLFESKGVKFVMKA 245
A A A + + V +V R AVP +EV +L + + +F+
Sbjct: 343 TAFDCATSALRCGARRVFLVFRKGFVNIRAVP------EEV-----ELAKEEKCEFLPFL 391
Query: 246 NVSSFEKNEKNDVTAANL------DNG---------TTIPADLVIVGIGTVLNTNYL--D 288
+ + + A + G + AD+VI G+VL +
Sbjct: 392 SPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450
Query: 289 GKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 320
++ N V+ ++T+ P V+AGGDI
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
Score = 69.8 bits (171), Expect = 5e-12
Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 101/333 (30%)
Query: 600 VVGGGPSGATCVETLRQNGFT------------GKL-YFITDENF-LPYD----RVKLSK 641
++G GP+ +C L + G++ G I F LPYD ++L K
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP--QFRLPYDVVNFEIELMK 249
Query: 642 QLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG- 700
L +K + + I+ + L E+ + ++ G
Sbjct: 250 DLGVK----------IICGKSL----SENEITLNTLKEE----------GYKAAFIGIGL 285
Query: 701 ------SSPRTISQADGV-NKVFYLRTV------EDANNIAPHITPESNVVVIGSSFIGM 747
+ ++Q G +L V +P + V+V+G+ G
Sbjct: 286 PEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA---GD 342
Query: 748 EA--AAFCASKV--KSVTVVGRG------AVPFQESLGKEVGERITKLFESKGVKFVMKA 797
A A A + + V +V R AVP +EV +L + + +F+
Sbjct: 343 TAFDCATSALRCGARRVFLVFRKGFVNIRAVP------EEV-----ELAKEEKCEFLPFL 391
Query: 798 NVSSFEKNEKNDVTAANL------DNG---------TTIPADLVIVGIGTVLNTNYL--D 840
+ + + A + G + AD+VI G+VL +
Sbjct: 392 SPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450
Query: 841 GKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 872
++ N V+ ++T+ P V+AGGDI
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
Score = 69.8 bits (171), Expect = 5e-12
Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 101/333 (30%)
Query: 1071 VVGGGPSGATCVETLRQNGFT------------GKL-YFITDENF-LPYD----RVKLSK 1112
++G GP+ +C L + G++ G I F LPYD ++L K
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP--QFRLPYDVVNFEIELMK 249
Query: 1113 QLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG- 1171
L +K + + I+ + L E+ + ++ G
Sbjct: 250 DLGVK----------IICGKSL----SENEITLNTLKEE----------GYKAAFIGIGL 285
Query: 1172 ------SSPRTISQADGV-NKVFYLRTV------EDANNIAPHITPESNVVVIGSSFIGM 1218
+ ++Q G +L V +P + V+V+G+ G
Sbjct: 286 PEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA---GD 342
Query: 1219 EA--AAFCASKV--KSVTVVGRG------AVPFQESLGKEVGERITKLFESKGVKFVMKA 1268
A A A + + V +V R AVP +EV +L + + +F+
Sbjct: 343 TAFDCATSALRCGARRVFLVFRKGFVNIRAVP------EEV-----ELAKEEKCEFLPFL 391
Query: 1269 NVSSFEKNEKNDVTAANL------DNG---------TTIPADLVIVGIGTVLNTNYL--D 1311
+ + + A + G + AD+VI G+VL +
Sbjct: 392 SPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450
Query: 1312 GKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 1343
++ N V+ ++T+ P V+AGGDI
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
Score = 31.7 bits (72), Expect = 2.2
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 29/165 (17%)
Query: 185 VVVIGSSFIGMEAAAFCASK-VKSVTVVGR----------GAVPFQESLGKEVGERITKL 233
+ ++G+ + A+F A +T+ + F+ L +V +L
Sbjct: 190 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFR--LPYDVVNFEIEL 247
Query: 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL-NTNYLDGKGV 292
+ GVK + ++S +N++T L +GIG T+ +
Sbjct: 248 MKDLGVKIICGKSLS------ENEITLNTLKEEG---YKAAFIGIGLPEPKTDDIFQGLT 298
Query: 293 ELNGQKAVVV--NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 335
+ G ++L AG ++PL S +G
Sbjct: 299 QDQG----FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG 339
Score = 31.7 bits (72), Expect = 2.2
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 29/165 (17%)
Query: 737 VVVIGSSFIGMEAAAFCASK-VKSVTVVGR----------GAVPFQESLGKEVGERITKL 785
+ ++G+ + A+F A +T+ + F+ L +V +L
Sbjct: 190 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFR--LPYDVVNFEIEL 247
Query: 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL-NTNYLDGKGV 844
+ GVK + ++S +N++T L +GIG T+ +
Sbjct: 248 MKDLGVKIICGKSLS------ENEITLNTLKEEG---YKAAFIGIGLPEPKTDDIFQGLT 298
Query: 845 ELNGQKAVVV--NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 887
+ G ++L AG ++PL S +G
Sbjct: 299 QDQG----FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG 339
Score = 31.7 bits (72), Expect = 2.2
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 29/165 (17%)
Query: 1208 VVVIGSSFIGMEAAAFCASK-VKSVTVVGR----------GAVPFQESLGKEVGERITKL 1256
+ ++G+ + A+F A +T+ + F+ L +V +L
Sbjct: 190 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFR--LPYDVVNFEIEL 247
Query: 1257 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL-NTNYLDGKGV 1315
+ GVK + ++S +N++T L +GIG T+ +
Sbjct: 248 MKDLGVKIICGKSLS------ENEITLNTLKEEG---YKAAFIGIGLPEPKTDDIFQGLT 298
Query: 1316 ELNGQKAVVV--NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358
+ G ++L AG ++PL S +G
Sbjct: 299 QDQG----FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG 339
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 67.1 bits (165), Expect = 8e-12
Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)
Query: 47 IVVGGGPSGAT-CVETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 93
++VG GP+GA + + R+ F G++ D EN++ + KL+ L +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATGS 149
+E+ D+ VI + +I+ G + I +ATG+
Sbjct: 65 HV-------DEY----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113
Query: 150 SPRTIS-------QADGV------------NKVFYLRTVEDANNIAPHITPESNVVVIGS 190
R ++ + GV K V VIG
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGK---------------------RVAVIGG 152
Query: 191 SFIGMEAAAFCASKVKSVTVVGRG----AVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
G+EAA A V+ VT++ A + L KL K V ++ A
Sbjct: 153 GNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL-------QDKLRSLKNVDIILNAQ 202
Query: 247 VSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 301
+ + + V + + I + V IG + NTN+L+G VE N ++
Sbjct: 203 TTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEII 260
Query: 302 VNEYLETNVPGVYAGGDIAYAPL 324
++ ETNV GV+A GD P
Sbjct: 261 IDAKCETNVKGVFAAGDCTTVPY 283
Score = 67.1 bits (165), Expect = 8e-12
Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)
Query: 599 IVVGGGPSGAT-CVETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 645
++VG GP+GA + + R+ F G++ D EN++ + KL+ L +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATGS 701
+E+ D+ VI + +I+ G + I +ATG+
Sbjct: 65 HV-------DEY----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113
Query: 702 SPRTIS-------QADGV------------NKVFYLRTVEDANNIAPHITPESNVVVIGS 742
R ++ + GV K V VIG
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGK---------------------RVAVIGG 152
Query: 743 SFIGMEAAAFCASKVKSVTVVGRG----AVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
G+EAA A V+ VT++ A + L KL K V ++ A
Sbjct: 153 GNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL-------QDKLRSLKNVDIILNAQ 202
Query: 799 VSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853
+ + + V + + I + V IG + NTN+L+G VE N ++
Sbjct: 203 TTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEII 260
Query: 854 VNEYLETNVPGVYAGGDIAYAPL 876
++ ETNV GV+A GD P
Sbjct: 261 IDAKCETNVKGVFAAGDCTTVPY 283
Score = 67.1 bits (165), Expect = 8e-12
Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)
Query: 1070 IVVGGGPSGAT-CVETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 1116
++VG GP+GA + + R+ F G++ D EN++ + KL+ L +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATGS 1172
+E+ D+ VI + +I+ G + I +ATG+
Sbjct: 65 HV-------DEY----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113
Query: 1173 SPRTIS-------QADGV------------NKVFYLRTVEDANNIAPHITPESNVVVIGS 1213
R ++ + GV K V VIG
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGK---------------------RVAVIGG 152
Query: 1214 SFIGMEAAAFCASKVKSVTVVGRG----AVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
G+EAA A V+ VT++ A + L KL K V ++ A
Sbjct: 153 GNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL-------QDKLRSLKNVDIILNAQ 202
Query: 1270 VSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324
+ + + V + + I + V IG + NTN+L+G VE N ++
Sbjct: 203 TTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEII 260
Query: 1325 VNEYLETNVPGVYAGGDIAYAPL 1347
++ ETNV GV+A GD P
Sbjct: 261 IDAKCETNVKGVFAAGDCTTVPY 283
Score = 30.5 bits (70), Expect = 3.4
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGR---GAV---------P-FQESLGKEVGERIT 231
V+++GS G AA + A K ++G G + ++ G+++ +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 232 KLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGTTIPADLVIVGIG 279
+ V + + S + + +G + A +IV G
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATG 112
Score = 30.5 bits (70), Expect = 3.4
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGR---GAV---------P-FQESLGKEVGERIT 783
V+++GS G AA + A K ++G G + ++ G+++ +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 784 KLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGTTIPADLVIVGIG 831
+ V + + S + + +G + A +IV G
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATG 112
Score = 30.5 bits (70), Expect = 3.4
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGR---GAV---------P-FQESLGKEVGERIT 1254
V+++GS G AA + A K ++G G + ++ G+++ +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 1255 KLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGTTIPADLVIVGIG 1302
+ V + + S + + +G + A +IV G
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATG 112
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase
protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A
{Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Length = 119
Score = 62.4 bits (152), Expect = 9e-12
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 973 FAERNIYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSL 1027
+ +YAV A + +G +GD V P + F++ +G + L
Sbjct: 35 IPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAH-CL 93
Query: 1028 PCYKVTIQNDDSVVVQARKDELKNKKR 1054
++VT+ ++ V EL++
Sbjct: 94 KTWRVTVDDNQ---VCYLAKELEHHHH 117
Score = 60.9 bits (148), Expect = 3e-11
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 507 IYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
+YAV A + +G +GD V P + F++ +G + L ++V
Sbjct: 40 VYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAH-CLKTWRV 98
Query: 562 TIQNDDSVVVQARKDELKNKKR 583
T+ ++ V EL++
Sbjct: 99 TVDDNQ---VCYLAKELEHHHH 117
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain,
rieske iron-sulfur protein, 3-layer sandwich, structural
genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Length = 113
Score = 60.1 bits (146), Expect = 5e-11
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 507 IYAVGTKCSHYGA-PLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
++A+ + + L +G + + + V P F ++ G + S+ Y+
Sbjct: 42 VFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEA 100
Query: 562 TIQNDDSVVVQA 573
+++ V ++
Sbjct: 101 RVKDGV-VQLRG 111
Score = 60.1 bits (146), Expect = 5e-11
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 978 IYAVGTKCSHYGA-PLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
++A+ + + L +G + + + V P F ++ G + S+ Y+
Sbjct: 42 VFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEA 100
Query: 1033 TIQNDDSVVVQA 1044
+++ V ++
Sbjct: 101 RVKDGV-VQLRG 111
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske
iron-sulfur protein, 3-layer beta- sandwich; NMR
{Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Length = 130
Score = 60.6 bits (147), Expect = 5e-11
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 507 IYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
+YA+ A L +G + + + V P F + G + S+ Y
Sbjct: 39 VYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAY-SVAAYDT 97
Query: 562 TIQNDD 567
+ N +
Sbjct: 98 QVTNGN 103
Score = 60.6 bits (147), Expect = 5e-11
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 978 IYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
+YA+ A L +G + + + V P F + G + S+ Y
Sbjct: 39 VYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAY-SVAAYDT 97
Query: 1033 TIQNDD 1038
+ N +
Sbjct: 98 QVTNGN 103
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATG 148
D + + E + I +G + + + + Y + G
Sbjct: 53 RDVDELKVDLSEALPEKGIQFQEGT--VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG 110
Query: 149 SSPRTISQADGVNK-VFYLRTVEDANNIAPHI-----------------TPESNVVVIGS 190
+ T G +K + + E A + + V +
Sbjct: 111 AHLAT-ELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 191 SFIGMEAAAFCA------------------SKVKSVTVVGRGAVPFQESLGKEVGERITK 232
++A KV VTV G L + +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH-VTVFSPGEYLS--DLSPNSRKAVAS 226
Query: 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 292
++ G+K V + ++E D + G TIPAD+ I+ N +
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVD------EKGNTIPADITILLPPYTGNPALKNSTPD 280
Query: 293 ELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351
++ + + + VYA GD K + GRIAA ++
Sbjct: 281 LVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT----VPKLGYLAVMT-----GRIAAQHL 331
Query: 352 VE 353
Sbjct: 332 AN 333
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATG 700
D + + E + I +G + + + + Y + G
Sbjct: 53 RDVDELKVDLSEALPEKGIQFQEGT--VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG 110
Query: 701 SSPRTISQADGVNK-VFYLRTVEDANNIAPHI-----------------TPESNVVVIGS 742
+ T G +K + + E A + + V +
Sbjct: 111 AHLAT-ELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 743 SFIGMEAAAFCA------------------SKVKSVTVVGRGAVPFQESLGKEVGERITK 784
++A KV VTV G L + +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH-VTVFSPGEYLS--DLSPNSRKAVAS 226
Query: 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 844
++ G+K V + ++E D + G TIPAD+ I+ N +
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVD------EKGNTIPADITILLPPYTGNPALKNSTPD 280
Query: 845 ELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903
++ + + + VYA GD K + GRIAA ++
Sbjct: 281 LVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT----VPKLGYLAVMT-----GRIAAQHL 331
Query: 904 VE 905
Sbjct: 332 AN 333
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATG 1171
D + + E + I +G + + + + Y + G
Sbjct: 53 RDVDELKVDLSEALPEKGIQFQEGT--VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG 110
Query: 1172 SSPRTISQADGVNK-VFYLRTVEDANNIAPHI-----------------TPESNVVVIGS 1213
+ T G +K + + E A + + V +
Sbjct: 111 AHLAT-ELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 1214 SFIGMEAAAFCA------------------SKVKSVTVVGRGAVPFQESLGKEVGERITK 1255
++A KV VTV G L + +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH-VTVFSPGEYLS--DLSPNSRKAVAS 226
Query: 1256 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 1315
++ G+K V + ++E D + G TIPAD+ I+ N +
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVD------EKGNTIPADITILLPPYTGNPALKNSTPD 280
Query: 1316 ELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374
++ + + + VYA GD K + GRIAA ++
Sbjct: 281 LVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT----VPKLGYLAVMT-----GRIAAQHL 331
Query: 1375 VE 1376
Sbjct: 332 AN 333
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERIT 231
V+V+G F + AA V S V V+ + V E+ ++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63
Query: 232 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 289
+ KG++F + V + + D VIVGIG L T + G
Sbjct: 64 EALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERIT 783
V+V+G F + AA V S V V+ + V E+ ++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63
Query: 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 841
+ KG++F + V + + D VIVGIG L T + G
Sbjct: 64 EALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERIT 1254
V+V+G F + AA V S V V+ + V E+ ++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63
Query: 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312
+ KG++F + V + + D VIVGIG L T + G
Sbjct: 64 EALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 61.0 bits (149), Expect = 8e-10
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 241
V VIG +E A +S V ++ R +++ E + + V+F
Sbjct: 156 VVAVIGGGDSALEGAEILSSYSTKVYLIHR-----RDTFKAQPIYVET---VKKKPNVEF 207
Query: 242 VMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 298
V+ + V + ++ V NL G + + V + IG T++ G+E +
Sbjct: 208 VLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267
Query: 299 AVVVNEYLETNVPGVYAGGDI 319
+ V+E++ T+VPGV+A GD
Sbjct: 268 YIKVDEWMRTSVPGVFAAGDC 288
Score = 61.0 bits (149), Expect = 8e-10
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 793
V VIG +E A +S V ++ R +++ E + + V+F
Sbjct: 156 VVAVIGGGDSALEGAEILSSYSTKVYLIHR-----RDTFKAQPIYVET---VKKKPNVEF 207
Query: 794 VMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 850
V+ + V + ++ V NL G + + V + IG T++ G+E +
Sbjct: 208 VLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267
Query: 851 AVVVNEYLETNVPGVYAGGDI 871
+ V+E++ T+VPGV+A GD
Sbjct: 268 YIKVDEWMRTSVPGVFAAGDC 288
Score = 61.0 bits (149), Expect = 8e-10
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 1264
V VIG +E A +S V ++ R +++ E + + V+F
Sbjct: 156 VVAVIGGGDSALEGAEILSSYSTKVYLIHR-----RDTFKAQPIYVET---VKKKPNVEF 207
Query: 1265 VMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 1321
V+ + V + ++ V NL G + + V + IG T++ G+E +
Sbjct: 208 VLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267
Query: 1322 AVVVNEYLETNVPGVYAGGDI 1342
+ V+E++ T+VPGV+A GD
Sbjct: 268 YIKVDEWMRTSVPGVFAAGDC 288
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 61.9 bits (151), Expect = 1e-09
Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 52/294 (17%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 103
VVG GPSG L G+ L + V L + R +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLA---EAG----RDLGGRVTQESALPGLSA--WGRVK 446
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-- 161
E+ + + + +I +S + I F + ATG++ RT A
Sbjct: 447 EYRE-AVLAELPNVEIYRESPMTGDDIV-----EFGFEHVITATGATWRTDGVARFHTTA 500
Query: 162 -------KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVG 212
+V +D A + VVV ++G A A K V++V
Sbjct: 501 LPIAEGMQVL---GPDDL--FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVT 555
Query: 213 RGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIP 270
GA + RI + GV V V + VT + +
Sbjct: 556 PGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELE 612
Query: 271 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
D V++ + +L V + V GD A+AP
Sbjct: 613 CDAVVMVTARLPREELYL----DL-------VARRDAGEIASVRGIGD-AWAPG 654
Score = 61.9 bits (151), Expect = 1e-09
Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 52/294 (17%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 655
VVG GPSG L G+ L + V L + R +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLA---EAG----RDLGGRVTQESALPGLSA--WGRVK 446
Query: 656 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-- 713
E+ + + + +I +S + I F + ATG++ RT A
Sbjct: 447 EYRE-AVLAELPNVEIYRESPMTGDDIV-----EFGFEHVITATGATWRTDGVARFHTTA 500
Query: 714 -------KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVG 764
+V +D A + VVV ++G A A K V++V
Sbjct: 501 LPIAEGMQVL---GPDDL--FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVT 555
Query: 765 RGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIP 822
GA + RI + GV V V + VT + +
Sbjct: 556 PGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELE 612
Query: 823 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
D V++ + +L V + V GD A+AP
Sbjct: 613 CDAVVMVTARLPREELYL----DL-------VARRDAGEIASVRGIGD-AWAPG 654
Score = 61.9 bits (151), Expect = 1e-09
Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 52/294 (17%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 1126
VVG GPSG L G+ L + V L + R +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLA---EAG----RDLGGRVTQESALPGLSA--WGRVK 446
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-- 1184
E+ + + + +I +S + I F + ATG++ RT A
Sbjct: 447 EYRE-AVLAELPNVEIYRESPMTGDDIV-----EFGFEHVITATGATWRTDGVARFHTTA 500
Query: 1185 -------KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVG 1235
+V +D A + VVV ++G A A K V++V
Sbjct: 501 LPIAEGMQVL---GPDDL--FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVT 555
Query: 1236 RGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIP 1293
GA + RI + GV V V + VT + +
Sbjct: 556 PGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELE 612
Query: 1294 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
D V++ + +L V + V GD A+AP
Sbjct: 613 CDAVVMVTARLPREELYL----DL-------VARRDAGEIASVRGIGD-AWAPG 654
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 57.4 bits (139), Expect = 2e-08
Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 43/289 (14%)
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
K + I + +I I K + + + Q G I++ + +ATG P+
Sbjct: 54 KFEDISVPLAPLLPKFNIEFINEK--AESIDPDANTVTTQSGKKIEYDYLVIATG--PKL 109
Query: 154 ISQADGVNK-VFYLRTVEDANNIAPHI---TPESNVVVIGSSFIGMEAA------AFCA- 202
+ A+G + + T E A + VVIG+ G+ A
Sbjct: 110 VFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGA-IPGVSCFGPAYEFALMLH 168
Query: 203 ---------SKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFE 251
KV +T + F + LF + + ++ V + E
Sbjct: 169 YELKKRGIRYKVP-MTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE 227
Query: 252 KNEKNDVTAANLD-NGTTIPADLVIV-----GIGTVLNTNYLDGKGVELNGQKAVVVNEY 305
++ V +L+ N +PA + G V + G V K V+VN
Sbjct: 228 PDK---VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASA----GDKVANPANKMVIVNRC 280
Query: 306 LE-TNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQYHGRIAALNMV 352
+ ++ G + P + + + A N+V
Sbjct: 281 FQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329
Score = 57.4 bits (139), Expect = 2e-08
Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 43/289 (14%)
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
K + I + +I I K + + + Q G I++ + +ATG P+
Sbjct: 54 KFEDISVPLAPLLPKFNIEFINEK--AESIDPDANTVTTQSGKKIEYDYLVIATG--PKL 109
Query: 706 ISQADGVNK-VFYLRTVEDANNIAPHI---TPESNVVVIGSSFIGMEAA------AFCA- 754
+ A+G + + T E A + VVIG+ G+ A
Sbjct: 110 VFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGA-IPGVSCFGPAYEFALMLH 168
Query: 755 ---------SKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFE 803
KV +T + F + LF + + ++ V + E
Sbjct: 169 YELKKRGIRYKVP-MTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE 227
Query: 804 KNEKNDVTAANLD-NGTTIPADLVIV-----GIGTVLNTNYLDGKGVELNGQKAVVVNEY 857
++ V +L+ N +PA + G V + G V K V+VN
Sbjct: 228 PDK---VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASA----GDKVANPANKMVIVNRC 280
Query: 858 LE-TNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQYHGRIAALNMV 904
+ ++ G + P + + + A N+V
Sbjct: 281 FQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329
Score = 57.4 bits (139), Expect = 2e-08
Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 43/289 (14%)
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
K + I + +I I K + + + Q G I++ + +ATG P+
Sbjct: 54 KFEDISVPLAPLLPKFNIEFINEK--AESIDPDANTVTTQSGKKIEYDYLVIATG--PKL 109
Query: 1177 ISQADGVNK-VFYLRTVEDANNIAPHI---TPESNVVVIGSSFIGMEAA------AFCA- 1225
+ A+G + + T E A + VVIG+ G+ A
Sbjct: 110 VFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGA-IPGVSCFGPAYEFALMLH 168
Query: 1226 ---------SKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFE 1274
KV +T + F + LF + + ++ V + E
Sbjct: 169 YELKKRGIRYKVP-MTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE 227
Query: 1275 KNEKNDVTAANLD-NGTTIPADLVIV-----GIGTVLNTNYLDGKGVELNGQKAVVVNEY 1328
++ V +L+ N +PA + G V + G V K V+VN
Sbjct: 228 PDK---VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASA----GDKVANPANKMVIVNRC 280
Query: 1329 LE-TNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQYHGRIAALNMV 1375
+ ++ G + P + + + A N+V
Sbjct: 281 FQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329
Score = 45.5 bits (108), Expect = 1e-04
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGA----------VPFQESLGKEVGERIT 231
+VVVIG G+ A + + +T++ + +++ +
Sbjct: 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLA 63
Query: 232 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 283
L ++F+ S + + N VT +G I D +++ G L
Sbjct: 64 PLLPKFNIEFI-NEKAESIDP-DANTVT---TQSGKKIEYDYLVIATGPKLV 110
Score = 45.5 bits (108), Expect = 1e-04
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGA----------VPFQESLGKEVGERIT 783
+VVVIG G+ A + + +T++ + +++ +
Sbjct: 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLA 63
Query: 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835
L ++F+ S + + N VT +G I D +++ G L
Sbjct: 64 PLLPKFNIEFI-NEKAESIDP-DANTVT---TQSGKKIEYDYLVIATGPKLV 110
Score = 45.5 bits (108), Expect = 1e-04
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGA----------VPFQESLGKEVGERIT 1254
+VVVIG G+ A + + +T++ + +++ +
Sbjct: 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLA 63
Query: 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306
L ++F+ S + + N VT +G I D +++ G L
Sbjct: 64 PLLPKFNIEFI-NEKAESIDP-DANTVT---TQSGKKIEYDYLVIATGPKLV 110
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster,
electron transport; 1.31A {Thermus thermophilus} SCOP:
b.33.1.1 PDB: 3fou_A
Length = 165
Score = 53.4 bits (128), Expect = 4e-08
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 966 MDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGM 1024
+ P AQ A + A C+H G + + + CP HG +++ + P
Sbjct: 68 LAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP 127
Query: 1025 DSLPCYKVTIQNDDSVVV 1042
+P V +++ V
Sbjct: 128 RPVPQLPVRVEDGVLVAA 145
Score = 53.1 bits (127), Expect = 5e-08
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQN 565
+ A C+H G + + + CP HG +++ + P +P V +++
Sbjct: 80 VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVED 139
Query: 566 DDSVVV 571
V
Sbjct: 140 GVLVAA 145
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 55.6 bits (135), Expect = 7e-08
Identities = 71/324 (21%), Positives = 110/324 (33%), Gaps = 84/324 (25%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 96
V+G GP+G E LR G+ +Y + YDR+ KL K
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVY----DR---YDRMGGLLVYGIPGFKLEK------- 172
Query: 97 SILLRTEEFYKDNDIHVIKGKKI---ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPR 152
S++ R + D + ++ S EL + +ATG R
Sbjct: 173 SVVERRVKLLADAGVIYHPNFEVGRDASLPELRR-----------KHVAVLVATGVYKAR 221
Query: 153 TI----SQADGV----------NKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEA 197
I S + NKV TVE N + +VVV+G M+
Sbjct: 222 DIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYEN--GSLNAAGKHVVVLGGGDTAMD- 278
Query: 198 AAFCA-----SKVKSVTVVGRG------AVPFQESLGKEVG-ERI----TKLFESKG-VK 240
C SV + R + + +E G E I + F V
Sbjct: 279 ---CVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVT 335
Query: 241 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNG 296
V + + T ++ G+ T+ ADLVI +G N D +++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 297 QKAVVVNE-YLETNVPGVYAGGDI 319
++V+ TN+ GV+A GDI
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
Score = 55.6 bits (135), Expect = 7e-08
Identities = 71/324 (21%), Positives = 110/324 (33%), Gaps = 84/324 (25%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 648
V+G GP+G E LR G+ +Y + YDR+ KL K
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVY----DR---YDRMGGLLVYGIPGFKLEK------- 172
Query: 649 SILLRTEEFYKDNDIHVIKGKKI---ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPR 704
S++ R + D + ++ S EL + +ATG R
Sbjct: 173 SVVERRVKLLADAGVIYHPNFEVGRDASLPELRR-----------KHVAVLVATGVYKAR 221
Query: 705 TI----SQADGV----------NKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEA 749
I S + NKV TVE N + +VVV+G M+
Sbjct: 222 DIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYEN--GSLNAAGKHVVVLGGGDTAMD- 278
Query: 750 AAFCA-----SKVKSVTVVGRG------AVPFQESLGKEVG-ERI----TKLFESKG-VK 792
C SV + R + + +E G E I + F V
Sbjct: 279 ---CVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVT 335
Query: 793 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNG 848
V + + T ++ G+ T+ ADLVI +G N D +++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 849 QKAVVVNE-YLETNVPGVYAGGDI 871
++V+ TN+ GV+A GDI
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
Score = 55.6 bits (135), Expect = 7e-08
Identities = 71/324 (21%), Positives = 110/324 (33%), Gaps = 84/324 (25%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 1119
V+G GP+G E LR G+ +Y + YDR+ KL K
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVY----DR---YDRMGGLLVYGIPGFKLEK------- 172
Query: 1120 SILLRTEEFYKDNDIHVIKGKKI---ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPR 1175
S++ R + D + ++ S EL + +ATG R
Sbjct: 173 SVVERRVKLLADAGVIYHPNFEVGRDASLPELRR-----------KHVAVLVATGVYKAR 221
Query: 1176 TI----SQADGV----------NKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEA 1220
I S + NKV TVE N + +VVV+G M+
Sbjct: 222 DIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYEN--GSLNAAGKHVVVLGGGDTAMD- 278
Query: 1221 AAFCA-----SKVKSVTVVGRG------AVPFQESLGKEVG-ERI----TKLFESKG-VK 1263
C SV + R + + +E G E I + F V
Sbjct: 279 ---CVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVT 335
Query: 1264 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNG 1319
V + + T ++ G+ T+ ADLVI +G N D +++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 1320 QKAVVVNE-YLETNVPGVYAGGDI 1342
++V+ TN+ GV+A GDI
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 53.9 bits (130), Expect = 3e-07
Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 59/310 (19%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 103
+VG GPSG+ L ++G+T L D ++ + L +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLT---DTA----EKIGGHLNQVAALPGLGE--WSYHR 444
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---------- 153
++ + I + K S L +K + D K+ +ATG+ T
Sbjct: 445 DYRE-TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDP 503
Query: 154 ISQADG-VNKVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTV 210
I AD + T E + VV++ + F+ A A+ VT+
Sbjct: 504 IPGADASLPDQL---TPEQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 211 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------EK 255
V + + + V+ + S E +
Sbjct: 559 VSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR 617
Query: 256 NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 313
+ N I D +++ G + EL +++ E+ E ++ G+
Sbjct: 618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARES----EWAENDIKGI 669
Query: 314 YAGGDIAYAP 323
Y GD A AP
Sbjct: 670 YLIGD-AEAP 678
Score = 53.9 bits (130), Expect = 3e-07
Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 59/310 (19%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 655
+VG GPSG+ L ++G+T L D ++ + L +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLT---DTA----EKIGGHLNQVAALPGLGE--WSYHR 444
Query: 656 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---------- 705
++ + I + K S L +K + D K+ +ATG+ T
Sbjct: 445 DYRE-TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDP 503
Query: 706 ISQADG-VNKVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTV 762
I AD + T E + VV++ + F+ A A+ VT+
Sbjct: 504 IPGADASLPDQL---TPEQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 763 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------EK 807
V + + + V+ + S E +
Sbjct: 559 VSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR 617
Query: 808 NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865
+ N I D +++ G + EL +++ E+ E ++ G+
Sbjct: 618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARES----EWAENDIKGI 669
Query: 866 YAGGDIAYAP 875
Y GD A AP
Sbjct: 670 YLIGD-AEAP 678
Score = 53.9 bits (130), Expect = 3e-07
Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 59/310 (19%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 1126
+VG GPSG+ L ++G+T L D ++ + L +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLT---DTA----EKIGGHLNQVAALPGLGE--WSYHR 444
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---------- 1176
++ + I + K S L +K + D K+ +ATG+ T
Sbjct: 445 DYRE-TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDP 503
Query: 1177 ISQADG-VNKVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTV 1233
I AD + T E + VV++ + F+ A A+ VT+
Sbjct: 504 IPGADASLPDQL---TPEQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 1234 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------EK 1278
V + + + V+ + S E +
Sbjct: 559 VSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR 617
Query: 1279 NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 1336
+ N I D +++ G + EL +++ E+ E ++ G+
Sbjct: 618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARES----EWAENDIKGI 669
Query: 1337 YAGGDIAYAP 1346
Y GD A AP
Sbjct: 670 YLIGD-AEAP 678
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase,
oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB:
3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Length = 349
Score = 52.5 bits (126), Expect = 5e-07
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 964 VGMDPLAAQFAERNI----------YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI 1013
+ PL + + A+ C H APL G L +G ++CP+HG F+
Sbjct: 18 LSEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFD- 76
Query: 1014 ATGDIEDFPGMDSLPCYKVTIQ 1035
G P + + ++
Sbjct: 77 GGGQCVHNPHGNGARPASLNVR 98
Score = 51.0 bits (122), Expect = 2e-06
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQ 564
+ A+ C H APL G L +G ++CP+HG F+ G P + + ++
Sbjct: 41 VVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFD-GGGQCVHNPHGNGARPASLNVR 98
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 52.5 bits (126), Expect = 6e-07
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 22/194 (11%)
Query: 177 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA------VPFQESLGKEVGERI 230
+ VVIG + G +AA A + + L +R+
Sbjct: 161 FDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDG 289
+ + +G + M + + + + N + D+G ++ I+ G N +
Sbjct: 221 GNVIK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ 279
Query: 290 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF---YNKNASIGHYQLAQYHGRI 346
+ Q + T P ++ G Y + +
Sbjct: 280 QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYK----------FRARFAV 329
Query: 347 AALNMVEKKTSLST 360
A +++ ++ L
Sbjct: 330 LA-HLLTQREGLPA 342
Score = 52.5 bits (126), Expect = 6e-07
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 22/194 (11%)
Query: 729 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA------VPFQESLGKEVGERI 782
+ VVIG + G +AA A + + L +R+
Sbjct: 161 FDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDG 841
+ + +G + M + + + + N + D+G ++ I+ G N +
Sbjct: 221 GNVIK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ 279
Query: 842 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF---YNKNASIGHYQLAQYHGRI 898
+ Q + T P ++ G Y + +
Sbjct: 280 QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYK----------FRARFAV 329
Query: 899 AALNMVEKKTSLST 912
A +++ ++ L
Sbjct: 330 LA-HLLTQREGLPA 342
Score = 52.5 bits (126), Expect = 6e-07
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 22/194 (11%)
Query: 1200 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA------VPFQESLGKEVGERI 1253
+ VVIG + G +AA A + + L +R+
Sbjct: 161 FDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDG 1312
+ + +G + M + + + + N + D+G ++ I+ G N +
Sbjct: 221 GNVIK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ 279
Query: 1313 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF---YNKNASIGHYQLAQYHGRI 1369
+ Q + T P ++ G Y + +
Sbjct: 280 QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYK----------FRARFAV 329
Query: 1370 AALNMVEKKTSLST 1383
A +++ ++ L
Sbjct: 330 LA-HLLTQREGLPA 342
Score = 30.5 bits (69), Expect = 4.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDE 77
++G G +G TL+ G T I E
Sbjct: 8 AIIGAGAAGIGMAITLKDFGIT---DVIILE 35
Score = 30.5 bits (69), Expect = 4.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDE 629
++G G +G TL+ G T I E
Sbjct: 8 AIIGAGAAGIGMAITLKDFGIT---DVIILE 35
Score = 30.5 bits (69), Expect = 4.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDE 1100
++G G +G TL+ G T I E
Sbjct: 8 AIIGAGAAGIGMAITLKDFGIT---DVIILE 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-06
Identities = 55/412 (13%), Positives = 118/412 (28%), Gaps = 106/412 (25%)
Query: 780 ERITKLFESKGVKFVMKANVSSFE----KNEKNDVTAAN------LDNGTTIPADLVIVG 829
+ F+ K V+ + K+ +S E K+ V+ L + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 830 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLET-----NVPGVYAGGDIAYAPLHSFYNK 882
VL NY L Q +++ Y+E N V+A +++ + +
Sbjct: 84 -EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 883 NASIGHYQL--AQY---HG------RIAALNMVEKKTSLSTIPF--FWTMLFGVGFRFAG 929
+L A+ G AL++ + F FW +
Sbjct: 143 AL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNC--- 192
Query: 930 YAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPL-----AAQFAERNIYAVGTK 984
++ ++ L+ L D + + + Q R +
Sbjct: 193 ----NSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---S 240
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIA------TGDIEDFPGMDSLPCYKVTIQNDD 1038
+ LV L + V+ FN++ T + + + +++ +
Sbjct: 241 KPYENCLLV---LLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 1039 SVVVQARKDEL-----KNKKRKLPMAKLSSGNKDTFIVVGGGP-SGATCVETLRQNGFTG 1092
+ L + + LP V+ P + E++R
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPRE-----------VLTTNPRRLSIIAESIRDG---- 340
Query: 1093 KLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF---YKD-----NDIHV 1136
T +N+ + KL+ ++ + L E+ + H+
Sbjct: 341 ---LATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAHI 387
Score = 51.0 bits (121), Expect = 4e-06
Identities = 95/626 (15%), Positives = 176/626 (28%), Gaps = 219/626 (34%)
Query: 401 SNADKVLAILTVGMDPLAAQFAEQVLEFPYSSL--PHSHRCLGVVLGKLDYHGTITISPN 458
S ++ L + + +F E+VL Y L P + Y N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 459 SP------SVS----FLQRTQWLTSILP--------LIGSSFSQSTLAISPASSTPKTLA 500
+VS +L+ Q L + P ++G ++ +A+ S
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCK 179
Query: 501 QSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPW--HGACFNIATGDIEDFPGMDSLPC 558
I+ W C N +E + L
Sbjct: 180 MD--FKIF--------------------------WLNLKNC-NSPETVLEM---LQKL-L 206
Query: 559 YKV----TIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETL 614
Y++ T ++D S ++ R ++ + R+L +K ++ +V+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVL------------- 250
Query: 615 RQNGFTGKLYFITDENFLPYDRV---KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 671
V K ++ ILL T + +
Sbjct: 251 --------------------LNVQNAKAWNAFNLSC-KILLTT----RFKQVTDFLSAAT 285
Query: 672 ISDSELNEKKIKLQDGTSID-FTKIYL----------ATGSSPRTISQ-----ADGVNKV 715
+ L+ + L K YL ++PR +S DG+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF------CASKVKSVTVVGRGAVP 769
+ H+ + +I SS +E A + + S +P
Sbjct: 345 DNWK----------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH------IP 388
Query: 770 FQ------ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
+ K + S EK K +IP
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKEST--------ISIP- 429
Query: 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAV---VVNEYLETNVPGVYAGGDIAYAPLHS-F 879
+ YL+ K V+L + A+ +V+ Y N+P + D+ L F
Sbjct: 430 SI------------YLELK-VKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYF 473
Query: 880 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRF-------AGYA- 931
Y+ IG +H + + E+ T M+F + FRF A
Sbjct: 474 YS---HIG------HH--LKNIEHPERMTLFR-------MVF-LDFRFLEQKIRHDSTAW 514
Query: 932 -AGHTQVDIVGDLEALKFTAYYSNAD 956
A + ++ + L+ + Y + D
Sbjct: 515 NASGSILNTLQQLK--FYKPYICDND 538
Score = 49.1 bits (116), Expect = 1e-05
Identities = 92/634 (14%), Positives = 170/634 (26%), Gaps = 187/634 (29%)
Query: 228 ERITKLFESKGVKFVMKANVSSFE----KNEKNDVTAAN------LDNGTTIPADLVIVG 277
+ F+ K V+ + K+ +S E K+ V+ L + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 278 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLET-----NVPGVYAGGDIAYAPLHSFYNK 330
VL NY L Q +++ Y+E N V+A +++ + +
Sbjct: 84 -EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 331 NASIGHYQL--AQY---HG------RIAALNMVEKKTSLSTIPF--FWTMLFGVGFRFAG 377
+L A+ G AL++ + F FW +
Sbjct: 143 AL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNC--- 192
Query: 378 YAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMD--PLAAQFAEQVLEFPYSSLPH 435
++ ++ L+ L D + L + L S P+
Sbjct: 193 ----NSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 436 SHRCLGVVLGKLDYHGTITISPN--SPSV--SF-LQ-RTQWLTSILPLIGSSFSQSTLAI 489
CL V L N + +F L + L+ + F Q T +
Sbjct: 244 E-NCLLV----LL---------NVQNAKAWNAFNLSCKI--------LLTTRFKQVTDFL 281
Query: 490 SPASST-------PKTLAQSTTSNIYA--VGTKCS------HYGAPLVKGSLG----DGR 530
S A++T TL ++ + + P + DG
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 531 VRCPW----HGACFNIAT---GDIEDFPGMDSLPCYK--------VTI------------ 563
W H C + T + + + I
Sbjct: 342 AT--WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 564 --QNDDSVVVQARKDELKNKKRK-----LPM----AKLSSGNKDTF---IVVGGGPSGAT 609
+ VV + K L K+ K +P K+ N+ IV
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--------D 451
Query: 610 CVETLR---QNGFTGKL---YFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDI 663
+ + YF + + + L + + L F D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFY---SHIGH---HLKNIE--HPERMTLFRMVFL---DF 500
Query: 664 HVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVED 723
++ +KI DS + + T K Y I D + + + D
Sbjct: 501 RFLE-QKIRHDSTAWNASGSILN-TLQQL-KFYK------PYICDNDPKYER-LVNAILD 550
Query: 724 -ANNIAPHI--TPESNVVVIG----SSFIGMEAA 750
I ++ + ++++ I I EA
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 36.0 bits (82), Expect = 0.11
Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 53/243 (21%)
Query: 1251 ERITKLFESKGVKFVMKANVSSFE----KNEKNDVTAAN------LDNGTTIPADLVIVG 1300
+ F+ K V+ + K+ +S E K+ V+ L + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 1301 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLET-----NVPGVYAGGDIAYAPLHSFYNK 1353
VL NY L Q +++ Y+E N V+A +++ + +
Sbjct: 84 -EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 1354 NASIGHYQL--AQY---HG------RIAALNMVEKKTSLSTIPF--FWTMLFGVGFRFAG 1400
+L A+ G AL++ + F FW +
Sbjct: 143 AL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNC--- 192
Query: 1401 YAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIE 1460
++ ++ L+ L D + + + + + K +
Sbjct: 193 ----NSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 1461 NNA 1463
N
Sbjct: 244 ENC 246
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 83/298 (27%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDE---NFLPYDRVKLSKQLDIKADSILLRTEE 104
VVG GP+G G L+ E F ++KQ+ K + T
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------IAKQIPGKEE--FYETLR 429
Query: 105 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSID------FTKIYLATGSSPRT--ISQ 156
+Y+ + + L+ ++ F + LA+G PRT I
Sbjct: 430 YYR---------------RMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDG 474
Query: 157 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG---- 212
D + + D + + V +IG IG + A + + +S +
Sbjct: 475 IDHPKVL----SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528
Query: 213 ---------------------------------RGAVPFQESLGKEVGERITKLFESKGV 239
R A + LGK G S+GV
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588
Query: 240 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT---NYLDGKGVEL 294
K + + + + + + D V++ G N L G +
Sbjct: 589 KMIPGVSYQKIDDDG---LHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTV 643
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 83/298 (27%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDE---NFLPYDRVKLSKQLDIKADSILLRTEE 656
VVG GP+G G L+ E F ++KQ+ K + T
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------IAKQIPGKEE--FYETLR 429
Query: 657 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSID------FTKIYLATGSSPRT--ISQ 708
+Y+ + + L+ ++ F + LA+G PRT I
Sbjct: 430 YYR---------------RMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDG 474
Query: 709 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG---- 764
D + + D + + V +IG IG + A + + +S +
Sbjct: 475 IDHPKVL----SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528
Query: 765 ---------------------------------RGAVPFQESLGKEVGERITKLFESKGV 791
R A + LGK G S+GV
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588
Query: 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT---NYLDGKGVEL 846
K + + + + + + D V++ G N L G +
Sbjct: 589 KMIPGVSYQKIDDDG---LHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTV 643
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 83/298 (27%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDE---NFLPYDRVKLSKQLDIKADSILLRTEE 1127
VVG GP+G G L+ E F ++KQ+ K + T
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------IAKQIPGKEE--FYETLR 429
Query: 1128 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSID------FTKIYLATGSSPRT--ISQ 1179
+Y+ + + L+ ++ F + LA+G PRT I
Sbjct: 430 YYR---------------RMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDG 474
Query: 1180 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG---- 1235
D + + D + + V +IG IG + A + + +S +
Sbjct: 475 IDHPKVL----SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528
Query: 1236 ---------------------------------RGAVPFQESLGKEVGERITKLFESKGV 1262
R A + LGK G S+GV
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588
Query: 1263 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT---NYLDGKGVEL 1317
K + + + + + + D V++ G N L G +
Sbjct: 589 KMIPGVSYQKIDDDG---LHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTV 643
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 49.4 bits (119), Expect = 5e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKF 241
VVVIG +E F VTV+ R +++L ++ + F + +KF
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR-----RDTLR---ANKVAQARAFANPKMKF 205
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 296
+ V + + V+ L N T + D V + IG V NT ++ V L
Sbjct: 206 IWDTAVEEIQGADS--VSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRD 262
Query: 297 QKAVVVNEYLETNVPGVYAGGDIA 320
V V + + TN+P ++A GD++
Sbjct: 263 DGYVDVRDEIYTNIPMLFAAGDVS 286
Score = 49.4 bits (119), Expect = 5e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKF 793
VVVIG +E F VTV+ R +++L ++ + F + +KF
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR-----RDTLR---ANKVAQARAFANPKMKF 205
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 848
+ V + + V+ L N T + D V + IG V NT ++ V L
Sbjct: 206 IWDTAVEEIQGADS--VSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRD 262
Query: 849 QKAVVVNEYLETNVPGVYAGGDIA 872
V V + + TN+P ++A GD++
Sbjct: 263 DGYVDVRDEIYTNIPMLFAAGDVS 286
Score = 49.4 bits (119), Expect = 5e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKF 1264
VVVIG +E F VTV+ R +++L ++ + F + +KF
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR-----RDTLR---ANKVAQARAFANPKMKF 205
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 1319
+ V + + V+ L N T + D V + IG V NT ++ V L
Sbjct: 206 IWDTAVEEIQGADS--VSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRD 262
Query: 1320 QKAVVVNEYLETNVPGVYAGGDIA 1343
V V + + TN+P ++A GD++
Sbjct: 263 DGYVDVRDEIYTNIPMLFAAGDVS 286
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske
oxygenase, 2Fe-2S, electron transfer, oxidoreductase;
2.30A {Nocardioides aromaticivorans}
Length = 394
Score = 49.6 bits (118), Expect = 5e-06
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 967 DPLAAQFAERNI---------YAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIAT 1015
+ +A + A+ C+H G P K L G V C +HG +++
Sbjct: 48 EFVAVTMLGEKVLLTRAKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDD 107
Query: 1016 GDIEDFPGMDSLP 1028
G + D P
Sbjct: 108 GRLVDVLTSPGSP 120
Score = 48.9 bits (116), Expect = 8e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMDSLP 557
+ A+ C+H G P K L G V C +HG +++ G + D P
Sbjct: 67 EVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSP 120
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 49.1 bits (118), Expect = 5e-06
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKFV 242
V V+G +E A + A+ + ++ R ++ T K+ +++ ++ +
Sbjct: 150 VAVLGGGDTALEEALYLANICSKIYLIHR-----RDEFR---AAPSTVEKVKKNEKIELI 201
Query: 243 MKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNYLDGKG----VEL 294
A+V ++ V + + + +G + L +
Sbjct: 202 TSASVDEVYGDKMG-VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNM 260
Query: 295 NGQKAVVVNEYLETNVPGVYAGGDIA 320
V V+ ++T+V G++A GD+
Sbjct: 261 EEGGQVSVDLKMQTSVAGLFAAGDLR 286
Score = 49.1 bits (118), Expect = 5e-06
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKFV 794
V V+G +E A + A+ + ++ R ++ T K+ +++ ++ +
Sbjct: 150 VAVLGGGDTALEEALYLANICSKIYLIHR-----RDEFR---AAPSTVEKVKKNEKIELI 201
Query: 795 MKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNYLDGKG----VEL 846
A+V ++ V + + + +G + L +
Sbjct: 202 TSASVDEVYGDKMG-VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNM 260
Query: 847 NGQKAVVVNEYLETNVPGVYAGGDIA 872
V V+ ++T+V G++A GD+
Sbjct: 261 EEGGQVSVDLKMQTSVAGLFAAGDLR 286
Score = 49.1 bits (118), Expect = 5e-06
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKFV 1265
V V+G +E A + A+ + ++ R ++ T K+ +++ ++ +
Sbjct: 150 VAVLGGGDTALEEALYLANICSKIYLIHR-----RDEFR---AAPSTVEKVKKNEKIELI 201
Query: 1266 MKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNYLDGKG----VEL 1317
A+V ++ V + + + +G + L +
Sbjct: 202 TSASVDEVYGDKMG-VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNM 260
Query: 1318 NGQKAVVVNEYLETNVPGVYAGGDIA 1343
V V+ ++T+V G++A GD+
Sbjct: 261 EEGGQVSVDLKMQTSVAGLFAAGDLR 286
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex,
rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2
d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Length = 392
Score = 48.8 bits (116), Expect = 8e-06
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 967 DPLAAQFAERNI---------YAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIAT 1015
+P + N+ Y + +C H G L + C +H +
Sbjct: 42 EPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED 101
Query: 1016 GDIEDFPGMDSLP 1028
G + D +
Sbjct: 102 GVLCDILTNPTSA 114
Score = 48.8 bits (116), Expect = 9e-06
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLP 557
+Y + +C H G L + C +H + G + D +
Sbjct: 61 KLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSA 114
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 47.9 bits (115), Expect = 1e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKF 241
V V+G +E A + A+ K V ++ R ++ IT + ++F
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHR-----RDGFR---CAPITLEHAKNNDKIEF 196
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKG----V 292
+ V K + + V++ ++ N T + + +G +N L +
Sbjct: 197 LTPYVVEEI-KGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLC 255
Query: 293 ELNGQKAVVVNEYLETNVPGVYAGGDIA 320
+ + ++VV+ ++TNV G++A GDI
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
Score = 47.9 bits (115), Expect = 1e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKF 793
V V+G +E A + A+ K V ++ R ++ IT + ++F
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHR-----RDGFR---CAPITLEHAKNNDKIEF 196
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKG----V 844
+ V K + + V++ ++ N T + + +G +N L +
Sbjct: 197 LTPYVVEEI-KGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLC 255
Query: 845 ELNGQKAVVVNEYLETNVPGVYAGGDIA 872
+ + ++VV+ ++TNV G++A GDI
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
Score = 47.9 bits (115), Expect = 1e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKF 1264
V V+G +E A + A+ K V ++ R ++ IT + ++F
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHR-----RDGFR---CAPITLEHAKNNDKIEF 196
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKG----V 1315
+ V K + + V++ ++ N T + + +G +N L +
Sbjct: 197 LTPYVVEEI-KGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLC 255
Query: 1316 ELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
+ + ++VV+ ++TNV G++A GDI
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERI 230
+VV++G+ GM AA + S VT++ V ++ I
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 290
E KG+ F+ + + E ++T L +G T+ D +++ G L + G
Sbjct: 66 RHYVERKGIHFI-AQSAEQIDA-EAQNIT---LADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 291 GVELNGQKAVVVNEYLE 307
+++ ++ E
Sbjct: 121 DPHEGPVQSICTVDHAE 137
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERI 782
+VV++G+ GM AA + S VT++ V ++ I
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842
E KG+ F+ + + E ++T L +G T+ D +++ G L + G
Sbjct: 66 RHYVERKGIHFI-AQSAEQIDA-EAQNIT---LADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 843 GVELNGQKAVVVNEYLE 859
+++ ++ E
Sbjct: 121 DPHEGPVQSICTVDHAE 137
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERI 1253
+VV++G+ GM AA + S VT++ V ++ I
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313
E KG+ F+ + + E ++T L +G T+ D +++ G L + G
Sbjct: 66 RHYVERKGIHFI-AQSAEQIDA-EAQNIT---LADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 1314 GVELNGQKAVVVNEYLE 1330
+++ ++ E
Sbjct: 121 DPHEGPVQSICTVDHAE 137
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component;
rieske center, oxygen binding/activation, substrate
bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2
d.129.3.3 PDB: 1z02_A 1z03_A*
Length = 446
Score = 47.4 bits (112), Expect = 3e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 503 TTSNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGM 553
++A+ +C H G L + + C +HG F++ TG +
Sbjct: 73 VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVAN 125
Score = 47.4 bits (112), Expect = 3e-05
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 977 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGM 1024
++A+ +C H G L + + C +HG F++ TG +
Sbjct: 76 KVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVAN 125
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske
nonheme iron oxygenase, electron transfer,
putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Length = 389
Score = 46.9 bits (111), Expect = 3e-05
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMD 554
++A+ +C H G L + C +HG + G + D
Sbjct: 64 VVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNP 114
Score = 46.9 bits (111), Expect = 3e-05
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 977 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMD 1025
++A+ +C H G L + C +HG + G + D
Sbjct: 64 VVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNP 114
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A
{Mycobacterium tuberculosis}
Length = 386
Score = 46.7 bits (111), Expect = 4e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLP 557
C H G L +G++ V CP+H + G + P P
Sbjct: 67 CRHMGGDLSEGTVKGDEVACPFHDWRWG-GDGRCKLVPYARRTP 109
Score = 46.7 bits (111), Expect = 4e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLP 1028
C H G L +G++ V CP+H + G + P P
Sbjct: 67 CRHMGGDLSEGTVKGDEVACPFHDWRWG-GDGRCKLVPYARRTP 109
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.33.1.1 PDB: 1g8j_B*
Length = 133
Score = 42.5 bits (100), Expect = 1e-04
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Query: 944 EALKFTAYYSNADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVR 1003
E + FT Y + + +G + +I A C+H G P
Sbjct: 21 EPVSFT--YPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCP-TSYDSSSKTFS 77
Query: 1004 CPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDEL 1049
CP H F+ G + LP + + D L
Sbjct: 78 CPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVGVDGL 124
Score = 39.5 bits (92), Expect = 0.001
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQ 564
+I A C+H G P CP H F+ G + LP +
Sbjct: 52 DIVAYSVLCTHMGCP-TSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYD 110
Query: 565 NDDSVVVQARKDEL 578
+ D L
Sbjct: 111 AASDALTAVGVDGL 124
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 43.3 bits (102), Expect = 5e-04
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 267 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 320
+PA LV+ +G G+ + Q + N P Y G I
Sbjct: 311 EELPAQLVVRSVGYRGVPT----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK 361
Score = 43.3 bits (102), Expect = 5e-04
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 872
+PA LV+ +G G+ + Q + N P Y G I
Sbjct: 311 EELPAQLVVRSVGYRGVPT----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK 361
Score = 43.3 bits (102), Expect = 5e-04
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 1290 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 1343
+PA LV+ +G G+ + Q + N P Y G I
Sbjct: 311 EELPAQLVVRSVGYRGVPT----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK 361
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 40.7 bits (95), Expect = 0.002
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 27/188 (14%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFIT--DENFLPYDRVKLSKQLDIKADSILLRT 102
+++GG + L L D+ F+ ++++ + D+ILL
Sbjct: 7 HVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPI 66
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN- 161
+ + I + I L E+ I+ + ++ I S+ N
Sbjct: 67 SGTNEAGKVDTIFSNESI---VLTEEMIEKTPNHCVVYSGI-----SNTYLNQCMKKTNR 118
Query: 162 KVFYLRTVEDANNIAPHITPE----------------SNVVVIGSSFIGMEAAAFCASKV 205
+ L +D T E +NV V+G +GM A A+
Sbjct: 119 TLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALG 178
Query: 206 KSVTVVGR 213
V V R
Sbjct: 179 AKVKVGAR 186
Score = 40.7 bits (95), Expect = 0.002
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 27/188 (14%)
Query: 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFIT--DENFLPYDRVKLSKQLDIKADSILLRT 654
+++GG + L L D+ F+ ++++ + D+ILL
Sbjct: 7 HVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPI 66
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN- 713
+ + I + I L E+ I+ + ++ I S+ N
Sbjct: 67 SGTNEAGKVDTIFSNESI---VLTEEMIEKTPNHCVVYSGI-----SNTYLNQCMKKTNR 118
Query: 714 KVFYLRTVEDANNIAPHITPE----------------SNVVVIGSSFIGMEAAAFCASKV 757
+ L +D T E +NV V+G +GM A A+
Sbjct: 119 TLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALG 178
Query: 758 KSVTVVGR 765
V V R
Sbjct: 179 AKVKVGAR 186
Score = 40.7 bits (95), Expect = 0.002
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 27/188 (14%)
Query: 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFIT--DENFLPYDRVKLSKQLDIKADSILLRT 1125
+++GG + L L D+ F+ ++++ + D+ILL
Sbjct: 7 HVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPI 66
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN- 1184
+ + I + I L E+ I+ + ++ I S+ N
Sbjct: 67 SGTNEAGKVDTIFSNESI---VLTEEMIEKTPNHCVVYSGI-----SNTYLNQCMKKTNR 118
Query: 1185 KVFYLRTVEDANNIAPHITPE----------------SNVVVIGSSFIGMEAAAFCASKV 1228
+ L +D T E +NV V+G +GM A A+
Sbjct: 119 TLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALG 178
Query: 1229 KSVTVVGR 1236
V V R
Sbjct: 179 AKVKVGAR 186
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A
{Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Length = 139
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+ + C+H G +V + + + CP HG+ +N G + P SL + +
Sbjct: 60 TFGINAVCTHLGC-VVPFNAAENKFICPCHGSQYN-NQGRVVRGPAPLSLALAHCDVDDG 117
Query: 567 DSVVVQARKDELK 579
V V + + +
Sbjct: 118 KVVFVPWTETDFR 130
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ + C+H G +V + + + CP HG+ +N G + P SL + +
Sbjct: 60 TFGINAVCTHLGC-VVPFNAAENKFICPCHGSQYN-NQGRVVRGPAPLSLALAHCDVDDG 117
Query: 1038 DSVVVQARKDELK 1050
V V + + +
Sbjct: 118 KVVFVPWTETDFR 130
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske,
thermosynechococcus elongatu photosynthesis, electron
transport; 2.00A {Thermosynechococcus elongatus}
Length = 133
Score = 37.9 bits (88), Expect = 0.005
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
Y + C+H G +V ++ + + CP HG+ ++ +TG + P SL K T+
Sbjct: 53 ANYGLNAVCTHLGC-VVPWNVSENKFICPCHGSQYD-STGKVVRGPAPLSLALVKATVTE 110
Query: 566 DDSVVV 571
DD +V
Sbjct: 111 DDKLVF 116
Score = 37.9 bits (88), Expect = 0.005
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
Y + C+H G +V ++ + + CP HG+ ++ +TG + P SL K T+
Sbjct: 53 ANYGLNAVCTHLGC-VVPWNVSENKFICPCHGSQYD-STGKVVRGPAPLSLALVKATVTE 110
Query: 1037 DDSVVV 1042
DD +V
Sbjct: 111 DDKLVF 116
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 39.4 bits (93), Expect = 0.007
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 242
+ VIG ME A F +SVT+V R ++ +I + + ++F+
Sbjct: 158 IAVIGGGDSAMEEATFLTRFARSVTLVHR-----RDEFR---ASKIMLDRARNNDKIRFL 209
Query: 243 MKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
V + + + VT + + T +P V V IG + + ++++
Sbjct: 210 TNHTVVAVDGDTT--VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREA-IDVDPD 266
Query: 298 KAVVVNE-YLETNVPGVYAGGDIA 320
V+V T++PGV+A GD+
Sbjct: 267 GYVLVQGRTTSTSLPGVFAAGDLV 290
Score = 39.4 bits (93), Expect = 0.007
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 794
+ VIG ME A F +SVT+V R ++ +I + + ++F+
Sbjct: 158 IAVIGGGDSAMEEATFLTRFARSVTLVHR-----RDEFR---ASKIMLDRARNNDKIRFL 209
Query: 795 MKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
V + + + VT + + T +P V V IG + + ++++
Sbjct: 210 TNHTVVAVDGDTT--VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREA-IDVDPD 266
Query: 850 KAVVVNE-YLETNVPGVYAGGDIA 872
V+V T++PGV+A GD+
Sbjct: 267 GYVLVQGRTTSTSLPGVFAAGDLV 290
Score = 39.4 bits (93), Expect = 0.007
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 1265
+ VIG ME A F +SVT+V R ++ +I + + ++F+
Sbjct: 158 IAVIGGGDSAMEEATFLTRFARSVTLVHR-----RDEFR---ASKIMLDRARNNDKIRFL 209
Query: 1266 MKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
V + + + VT + + T +P V V IG + + ++++
Sbjct: 210 TNHTVVAVDGDTT--VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREA-IDVDPD 266
Query: 1321 KAVVVNE-YLETNVPGVYAGGDIA 1343
V+V T++PGV+A GD+
Sbjct: 267 GYVLVQGRTTSTSLPGVFAAGDLV 290
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 38.3 bits (90), Expect = 0.014
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 242
+ VIG ME A F V ++ R +++ +I + + + +
Sbjct: 162 LAVIGGGDSAMEEANFLTKYGSKVYIIHR-----RDAFR---ASKIMQQRALSNPKIDVI 213
Query: 243 MKANVSSFEKNEKND-VTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 296
++V + + D + + N T + + IG T +LDG VEL+
Sbjct: 214 WNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGG-VELDS 272
Query: 297 QKAVVVNE-YLETNVPGVYAGGDIA 320
VV +T+VPGV+A GD+
Sbjct: 273 DGYVVTKPGTTQTSVPGVFAAGDVQ 297
Score = 38.3 bits (90), Expect = 0.014
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 794
+ VIG ME A F V ++ R +++ +I + + + +
Sbjct: 162 LAVIGGGDSAMEEANFLTKYGSKVYIIHR-----RDAFR---ASKIMQQRALSNPKIDVI 213
Query: 795 MKANVSSFEKNEKND-VTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 848
++V + + D + + N T + + IG T +LDG VEL+
Sbjct: 214 WNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGG-VELDS 272
Query: 849 QKAVVVNE-YLETNVPGVYAGGDIA 872
VV +T+VPGV+A GD+
Sbjct: 273 DGYVVTKPGTTQTSVPGVFAAGDVQ 297
Score = 38.3 bits (90), Expect = 0.014
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 1265
+ VIG ME A F V ++ R +++ +I + + + +
Sbjct: 162 LAVIGGGDSAMEEANFLTKYGSKVYIIHR-----RDAFR---ASKIMQQRALSNPKIDVI 213
Query: 1266 MKANVSSFEKNEKND-VTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 1319
++V + + D + + N T + + IG T +LDG VEL+
Sbjct: 214 WNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGG-VELDS 272
Query: 1320 QKAVVVNE-YLETNVPGVYAGGDIA 1343
VV +T+VPGV+A GD+
Sbjct: 273 DGYVVTKPGTTQTSVPGVFAAGDVQ 297
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 38.1 bits (89), Expect = 0.022
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 228 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+ + ++ K + + V E+ V + D+ I +G
Sbjct: 193 DELERIIMENKGKILTRKEVVEINI-EEKKVY---TRDNEEYSFDVAISNVG 240
Score = 38.1 bits (89), Expect = 0.022
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 780 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
+ + ++ K + + V E+ V + D+ I +G
Sbjct: 193 DELERIIMENKGKILTRKEVVEINI-EEKKVY---TRDNEEYSFDVAISNVG 240
Score = 38.1 bits (89), Expect = 0.022
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
+ + ++ K + + V E+ V + D+ I +G
Sbjct: 193 DELERIIMENKGKILTRKEVVEINI-EEKKVY---TRDNEEYSFDVAISNVG 240
Score = 30.4 bits (69), Expect = 5.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVV 211
VV+G+ G+ A AF A + V+
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVL 29
Score = 30.4 bits (69), Expect = 5.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVV 763
VV+G+ G+ A AF A + V+
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVL 29
Score = 30.4 bits (69), Expect = 5.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVV 1234
VV+G+ G+ A AF A + V+
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVL 29
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 37.5 bits (88), Expect = 0.028
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 18/144 (12%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 242
+ VIG E A F V ++ R ++ L I + +++ ++ +
Sbjct: 176 LAVIGGGDSACEEAQFLTKYGSKVFMLVR-----KDHLR---ASTIMQKRAEKNEKIEIL 227
Query: 243 MKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
+ + K + A + N +P + IG T + G+ V+ +
Sbjct: 228 YNTVALEAKGDGKL-LNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQ-VDTDEA 285
Query: 298 KAVVVNE-YLETNVPGVYAGGDIA 320
+ T+VPG +A GD+
Sbjct: 286 GYIKTVPGSSLTSVPGFFAAGDVQ 309
Score = 37.5 bits (88), Expect = 0.028
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 18/144 (12%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 794
+ VIG E A F V ++ R ++ L I + +++ ++ +
Sbjct: 176 LAVIGGGDSACEEAQFLTKYGSKVFMLVR-----KDHLR---ASTIMQKRAEKNEKIEIL 227
Query: 795 MKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
+ + K + A + N +P + IG T + G+ V+ +
Sbjct: 228 YNTVALEAKGDGKL-LNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQ-VDTDEA 285
Query: 850 KAVVVNE-YLETNVPGVYAGGDIA 872
+ T+VPG +A GD+
Sbjct: 286 GYIKTVPGSSLTSVPGFFAAGDVQ 309
Score = 37.5 bits (88), Expect = 0.028
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 18/144 (12%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFV 1265
+ VIG E A F V ++ R ++ L I + +++ ++ +
Sbjct: 176 LAVIGGGDSACEEAQFLTKYGSKVFMLVR-----KDHLR---ASTIMQKRAEKNEKIEIL 227
Query: 1266 MKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
+ + K + A + N +P + IG T + G+ V+ +
Sbjct: 228 YNTVALEAKGDGKL-LNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQ-VDTDEA 285
Query: 1321 KAVVVNE-YLETNVPGVYAGGDIA 1343
+ T+VPG +A GD+
Sbjct: 286 GYIKTVPGSSLTSVPGFFAAGDVQ 309
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 36.3 bits (85), Expect = 0.058
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 19/148 (12%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKFV 242
V VIG +E A + ++ V ++ R ++ K + +R+ E+ +
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHR-----RDGFRAEKILIKRLMDKVENGNIILH 202
Query: 243 MKANVSSFEKNEKNDVTAANLDNGTT------IPADLVIVGIGTVLNTNYLDGKGVEL-N 295
+ ++ VT L + + + V IG NT +G+ +EL N
Sbjct: 203 TNRTLEEVTGDQMG-VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ-LELEN 260
Query: 296 G---QKAVVVNEYLETNVPGVYAGGDIA 320
G ++ + +T++PGV+A GD+
Sbjct: 261 GYIKVQSGIHGNATQTSIPGVFAAGDVM 288
Score = 36.3 bits (85), Expect = 0.058
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 19/148 (12%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKFV 794
V VIG +E A + ++ V ++ R ++ K + +R+ E+ +
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHR-----RDGFRAEKILIKRLMDKVENGNIILH 202
Query: 795 MKANVSSFEKNEKNDVTAANLDNGTT------IPADLVIVGIGTVLNTNYLDGKGVEL-N 847
+ ++ VT L + + + V IG NT +G+ +EL N
Sbjct: 203 TNRTLEEVTGDQMG-VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ-LELEN 260
Query: 848 G---QKAVVVNEYLETNVPGVYAGGDIA 872
G ++ + +T++PGV+A GD+
Sbjct: 261 GYIKVQSGIHGNATQTSIPGVFAAGDVM 288
Score = 36.3 bits (85), Expect = 0.058
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 19/148 (12%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKFV 1265
V VIG +E A + ++ V ++ R ++ K + +R+ E+ +
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHR-----RDGFRAEKILIKRLMDKVENGNIILH 202
Query: 1266 MKANVSSFEKNEKNDVTAANLDNGTT------IPADLVIVGIGTVLNTNYLDGKGVEL-N 1318
+ ++ VT L + + + V IG NT +G+ +EL N
Sbjct: 203 TNRTLEEVTGDQMG-VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ-LELEN 260
Query: 1319 G---QKAVVVNEYLETNVPGVYAGGDIA 1343
G ++ + +T++PGV+A GD+
Sbjct: 261 GYIKVQSGIHGNATQTSIPGVFAAGDVM 288
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 36.4 bits (84), Expect = 0.063
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 250 FEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNY----LDGKGVELNGQKAVV 301
+ A T +P LV+ IG Y +D V + + VV
Sbjct: 297 LAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG------YKSRPIDP-SVPFDPKLGVV 349
Query: 302 VNE--YLETNVPGVYAGGDIA 320
N + +VPG+Y G +
Sbjct: 350 PNMEGRV-VDVPGLYCSGWVK 369
Score = 36.4 bits (84), Expect = 0.063
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 802 FEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNY----LDGKGVELNGQKAVV 853
+ A T +P LV+ IG Y +D V + + VV
Sbjct: 297 LAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG------YKSRPIDP-SVPFDPKLGVV 349
Query: 854 VNE--YLETNVPGVYAGGDIA 872
N + +VPG+Y G +
Sbjct: 350 PNMEGRV-VDVPGLYCSGWVK 369
Score = 36.4 bits (84), Expect = 0.063
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 1273 FEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNY----LDGKGVELNGQKAVV 1324
+ A T +P LV+ IG Y +D V + + VV
Sbjct: 297 LAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG------YKSRPIDP-SVPFDPKLGVV 349
Query: 1325 VNE--YLETNVPGVYAGGDIA 1343
N + +VPG+Y G +
Sbjct: 350 PNMEGRV-VDVPGLYCSGWVK 369
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 35.5 bits (82), Expect = 0.11
Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 45/225 (20%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTV-----------------VGRGAVPFQESLGKEVG 227
VVV+G G AA + S+ V V G +
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI------ 58
Query: 228 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 287
+ + G++ V + + + +K V G D +V G L + +
Sbjct: 59 KHGYDGLRAHGIQVV-HDSATGIDP-DKKLVK---TAGGAEFGYDRCVVAPGIELIYDKI 113
Query: 288 DGKGVELNGQKAVVVNEYLET------NVPGVYAGGDIAYAPLHSFYN------KNASIG 335
+G E K + E + + GG + AP + + + AS
Sbjct: 114 EGYSEEA-AAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQV 172
Query: 336 HYQLAQYHGRIAALNMVEKKTSLSTIPFF---WTMLFGVGFRFAG 377
Y L H ++ + +++ + S F W L+G G A
Sbjct: 173 AYYLKA-HKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216
Score = 35.5 bits (82), Expect = 0.11
Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 45/225 (20%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTV-----------------VGRGAVPFQESLGKEVG 779
VVV+G G AA + S+ V V G +
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI------ 58
Query: 780 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 839
+ + G++ V + + + +K V G D +V G L + +
Sbjct: 59 KHGYDGLRAHGIQVV-HDSATGIDP-DKKLVK---TAGGAEFGYDRCVVAPGIELIYDKI 113
Query: 840 DGKGVELNGQKAVVVNEYLET------NVPGVYAGGDIAYAPLHSFYN------KNASIG 887
+G E K + E + + GG + AP + + + AS
Sbjct: 114 EGYSEEA-AAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQV 172
Query: 888 HYQLAQYHGRIAALNMVEKKTSLSTIPFF---WTMLFGVGFRFAG 929
Y L H ++ + +++ + S F W L+G G A
Sbjct: 173 AYYLKA-HKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216
Score = 35.5 bits (82), Expect = 0.11
Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 45/225 (20%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTV-----------------VGRGAVPFQESLGKEVG 1250
VVV+G G AA + S+ V V G +
Sbjct: 5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI------ 58
Query: 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 1310
+ + G++ V + + + +K V G D +V G L + +
Sbjct: 59 KHGYDGLRAHGIQVV-HDSATGIDP-DKKLVK---TAGGAEFGYDRCVVAPGIELIYDKI 113
Query: 1311 DGKGVELNGQKAVVVNEYLET------NVPGVYAGGDIAYAPLHSFYN------KNASIG 1358
+G E K + E + + GG + AP + + + AS
Sbjct: 114 EGYSEEA-AAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQV 172
Query: 1359 HYQLAQYHGRIAALNMVEKKTSLSTIPFF---WTMLFGVGFRFAG 1400
Y L H ++ + +++ + S F W L+G G A
Sbjct: 173 AYYLKA-HKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216
Score = 34.7 bits (80), Expect = 0.19
Identities = 48/343 (13%), Positives = 100/343 (29%), Gaps = 63/343 (18%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDRVKLSKQLDIKADS 97
+VVGGG GAT + ++ + ++ I N + KL
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLES-------- 57
Query: 98 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---- 153
+ + + + I V+ + + ++K +K G + + +A G
Sbjct: 58 -IKHGYDGLRAHGIQVVHDS--ATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIE 114
Query: 154 -ISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS------------FIGMEAA 198
S+ + E + + + VVI A
Sbjct: 115 GYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAY 174
Query: 199 AFCASKVKSVTVVGRGAVPF--QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
A K S ++ + F Q K E+ +++ + + + +
Sbjct: 175 YLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGE 234
Query: 257 DVTAANLDNGTTIPADLVIV-----GIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNV 310
+ G AD++ + + G V + E +
Sbjct: 235 MM--VETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAG------WCPVDIKTFESSIH 286
Query: 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353
G++ GD + A K+ + Q G++AA +V
Sbjct: 287 KGIHVIGDASIANPMP---KSGYSANSQ-----GKVAAAAVVV 321
Score = 34.7 bits (80), Expect = 0.19
Identities = 48/343 (13%), Positives = 100/343 (29%), Gaps = 63/343 (18%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDRVKLSKQLDIKADS 649
+VVGGG GAT + ++ + ++ I N + KL
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLES-------- 57
Query: 650 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---- 705
+ + + + I V+ + + ++K +K G + + +A G
Sbjct: 58 -IKHGYDGLRAHGIQVVHDS--ATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIE 114
Query: 706 -ISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS------------FIGMEAA 750
S+ + E + + + VVI A
Sbjct: 115 GYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAY 174
Query: 751 AFCASKVKSVTVVGRGAVPF--QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
A K S ++ + F Q K E+ +++ + + + +
Sbjct: 175 YLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGE 234
Query: 809 DVTAANLDNGTTIPADLVIV-----GIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNV 862
+ G AD++ + + G V + E +
Sbjct: 235 MM--VETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAG------WCPVDIKTFESSIH 286
Query: 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905
G++ GD + A K+ + Q G++AA +V
Sbjct: 287 KGIHVIGDASIANPMP---KSGYSANSQ-----GKVAAAAVVV 321
Score = 34.7 bits (80), Expect = 0.19
Identities = 48/343 (13%), Positives = 100/343 (29%), Gaps = 63/343 (18%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDRVKLSKQLDIKADS 1120
+VVGGG GAT + ++ + ++ I N + KL
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLES-------- 57
Query: 1121 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---- 1176
+ + + + I V+ + + ++K +K G + + +A G
Sbjct: 58 -IKHGYDGLRAHGIQVVHDS--ATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIE 114
Query: 1177 -ISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS------------FIGMEAA 1221
S+ + E + + + VVI A
Sbjct: 115 GYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAY 174
Query: 1222 AFCASKVKSVTVVGRGAVPF--QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
A K S ++ + F Q K E+ +++ + + + +
Sbjct: 175 YLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGE 234
Query: 1280 DVTAANLDNGTTIPADLVIV-----GIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNV 1333
+ G AD++ + + G V + E +
Sbjct: 235 MM--VETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAG------WCPVDIKTFESSIH 286
Query: 1334 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376
G++ GD + A K+ + Q G++AA +V
Sbjct: 287 KGIHVIGDASIANPMP---KSGYSANSQ-----GKVAAAAVVV 321
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.5 bits (81), Expect = 0.15
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 68
M +S K I++G G +G TL QNG
Sbjct: 1 MNTVSPAKKKV-IIIGAGIAGLKAASTLHQNGIQ 33
Score = 35.5 bits (81), Expect = 0.15
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 620
M +S K I++G G +G TL QNG
Sbjct: 1 MNTVSPAKKKV-IIIGAGIAGLKAASTLHQNGIQ 33
Score = 35.5 bits (81), Expect = 0.15
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 1091
M +S K I++G G +G TL QNG
Sbjct: 1 MNTVSPAKKKV-IIIGAGIAGLKAASTLHQNGIQ 33
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 35.2 bits (81), Expect = 0.15
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
+++GGG +G++ L + G
Sbjct: 10 LIIGGGFAGSSAAYQLSRRGL 30
Score = 35.2 bits (81), Expect = 0.15
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
+++GGG +G++ L + G
Sbjct: 10 LIIGGGFAGSSAAYQLSRRGL 30
Score = 35.2 bits (81), Expect = 0.15
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
+++GGG +G++ L + G
Sbjct: 10 LIIGGGFAGSSAAYQLSRRGL 30
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 35.0 bits (81), Expect = 0.19
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
+VVGGGP G+T + G
Sbjct: 8 LVVGGGPGGSTAARYAAKYGL 28
Score = 35.0 bits (81), Expect = 0.19
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
+VVGGGP G+T + G
Sbjct: 8 LVVGGGPGGSTAARYAAKYGL 28
Score = 35.0 bits (81), Expect = 0.19
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
+VVGGGP G+T + G
Sbjct: 8 LVVGGGPGGSTAARYAAKYGL 28
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 34.3 bits (79), Expect = 0.32
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 225 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+ + + + + G K VS E + + ADLVI +G
Sbjct: 197 GIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGI-IADDRIHDADLVISNLG 249
Score = 34.3 bits (79), Expect = 0.32
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
+ + + + + G K VS E + + ADLVI +G
Sbjct: 197 GIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGI-IADDRIHDADLVISNLG 249
Score = 34.3 bits (79), Expect = 0.32
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
+ + + + + G K VS E + + ADLVI +G
Sbjct: 197 GIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGI-IADDRIHDADLVISNLG 249
Score = 31.2 bits (71), Expect = 2.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVV 211
VVIG+ G+ +AA + V V
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVF 29
Score = 31.2 bits (71), Expect = 2.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVV 763
VVIG+ G+ +AA + V V
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVF 29
Score = 31.2 bits (71), Expect = 2.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVV 1234
VVIG+ G+ +AA + V V
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVF 29
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase,
oxidoreductase, non heme iron; 1.70A {Sphingobium
yanoikuyae} PDB: 2gbx_A* 2ckf_A
Length = 454
Score = 34.1 bits (78), Expect = 0.35
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 554
CSH G + G+ + C +HG F G + D P
Sbjct: 80 CSHRGNQICHADSGNAKAFVCNYHGWVFGQ-DGSLVDVPLES 120
Score = 34.1 bits (78), Expect = 0.35
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 1025
CSH G + G+ + C +HG F G + D P
Sbjct: 80 CSHRGNQICHADSGNAKAFVCNYHGWVFGQ-DGSLVDVPLES 120
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 34.1 bits (77), Expect = 0.43
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 26 LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 67
L N + L + I++G G SG L+ G
Sbjct: 90 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
Score = 34.1 bits (77), Expect = 0.43
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 578 LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 619
L N + L + I++G G SG L+ G
Sbjct: 90 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
Score = 34.1 bits (77), Expect = 0.43
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 1049 LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 1090
L N + L + I++G G SG L+ G
Sbjct: 90 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 131
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 33.7 bits (77), Expect = 0.43
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 232 KLFESKGVKFVM---KANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 276
+ + GVKFV + V + E NDV A +G A+ +
Sbjct: 169 REAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFL 215
Score = 33.7 bits (77), Expect = 0.43
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 784 KLFESKGVKFVM---KANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 828
+ + GVKFV + V + E NDV A +G A+ +
Sbjct: 169 REAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFL 215
Score = 33.7 bits (77), Expect = 0.43
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 1255 KLFESKGVKFVM---KANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299
+ + GVKFV + V + E NDV A +G A+ +
Sbjct: 169 REAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFL 215
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme
iron, N-demethylase, oxido; 1.59A {Sinorhizobium
meliloti} PDB: 3vcp_A
Length = 412
Score = 33.6 bits (77), Expect = 0.46
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 554
C H G+ + K G CP+H + + G + M
Sbjct: 86 CRHRGSLICKARQGQVAKLVCPYHQWTYEL-DGKLIWANDMG 126
Score = 33.6 bits (77), Expect = 0.46
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 1025
C H G+ + K G CP+H + + G + M
Sbjct: 86 CRHRGSLICKARQGQVAKLVCPYHQWTYEL-DGKLIWANDMG 126
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S,
aromatic hydroc catabolism, iron, iron-sulfur,
metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas
testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A*
2xr8_A* 2yfi_A 2yfj_A*
Length = 457
Score = 33.7 bits (77), Expect = 0.48
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
C H G +V+ G+ + C +HG ++I G++ + P C K
Sbjct: 100 CRHRGMRIVRSDGGNAKAFTCTYHGWAYDI-AGNLVNVPFEKEAFCDKKEGDCG 152
Score = 33.7 bits (77), Expect = 0.48
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
C H G +V+ G+ + C +HG ++I G++ + P C K
Sbjct: 100 CRHRGMRIVRSDGGNAKAFTCTYHGWAYDI-AGNLVNVPFEKEAFCDKKEGDCG 152
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer,
oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2
d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Length = 460
Score = 33.7 bits (77), Expect = 0.53
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMDSLP 557
C H G + + G+ + C +HG ++ G++ P +
Sbjct: 98 CRHRGMRICRADGGNAKSFTCSYHGWAYDT-GGNLVSVPFEEQAF 141
Score = 33.7 bits (77), Expect = 0.53
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMDSLP 1028
C H G + + G+ + C +HG ++ G++ P +
Sbjct: 98 CRHRGMRICRADGGNAKSFTCSYHGWAYDT-GGNLVSVPFEEQAF 141
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 33.4 bits (76), Expect = 0.62
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351
+ + A T V G++ D A H S G + GRI M
Sbjct: 434 EDYKVRAANGKVYNRMTTVEGLWTCADGVGASGH-----KFSSGSHAE----GRIVGKQM 484
Query: 352 VE 353
V
Sbjct: 485 VR 486
Score = 33.4 bits (76), Expect = 0.62
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903
+ + A T V G++ D A H S G + GRI M
Sbjct: 434 EDYKVRAANGKVYNRMTTVEGLWTCADGVGASGH-----KFSSGSHAE----GRIVGKQM 484
Query: 904 VE 905
V
Sbjct: 485 VR 486
Score = 33.4 bits (76), Expect = 0.62
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374
+ + A T V G++ D A H S G + GRI M
Sbjct: 434 EDYKVRAANGKVYNRMTTVEGLWTCADGVGASGH-----KFSSGSHAE----GRIVGKQM 484
Query: 1375 VE 1376
V
Sbjct: 485 VR 486
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 33.1 bits (74), Expect = 0.63
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 46 FIVVGGGPSGATCVETLRQNGF 67
++G G +G + + L G
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGH 26
Score = 33.1 bits (74), Expect = 0.63
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 598 FIVVGGGPSGATCVETLRQNGF 619
++G G +G + + L G
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGH 26
Score = 33.1 bits (74), Expect = 0.63
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 1069 FIVVGGGPSGATCVETLRQNGF 1090
++G G +G + + L G
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGH 26
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S]
domain, structural genomics, joint center FO structural
genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Length = 409
Score = 33.1 bits (76), Expect = 0.66
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 554
C H G+ + K G+ CP+H + + G + M
Sbjct: 84 CRHRGSVICKAKKGNNPKLVCPYHQWTYEL-DGRLLWARDMG 124
Score = 33.1 bits (76), Expect = 0.66
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 1025
C H G+ + K G+ CP+H + + G + M
Sbjct: 84 CRHRGSVICKAKKGNNPKLVCPYHQWTYEL-DGRLLWARDMG 124
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 33.2 bits (75), Expect = 0.74
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 14 DDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 67
D V + E N + +K D +++VG G +G+ E L +G
Sbjct: 5 DLPSAVTNERTEQTNTTNEQQESK----GFD-YLIVGAGFAGSVLAERLASSGQ 53
Score = 33.2 bits (75), Expect = 0.74
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 566 DDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 619
D V + E N + +K D +++VG G +G+ E L +G
Sbjct: 5 DLPSAVTNERTEQTNTTNEQQESK----GFD-YLIVGAGFAGSVLAERLASSGQ 53
Score = 33.2 bits (75), Expect = 0.74
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 1037 DDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 1090
D V + E N + +K D +++VG G +G+ E L +G
Sbjct: 5 DLPSAVTNERTEQTNTTNEQQESK----GFD-YLIVGAGFAGSVLAERLASSGQ 53
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron
oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2b24_A
Length = 470
Score = 33.0 bits (75), Expect = 0.75
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 554
C H G + + +G+ RCP+HG ++ TG + P
Sbjct: 88 CRHRGMQVCRAEMGNTSHFRCPYHGWTYSN-TGSLVGVPAGK 128
Score = 33.0 bits (75), Expect = 0.75
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 1025
C H G + + +G+ RCP+HG ++ TG + P
Sbjct: 88 CRHRGMQVCRAEMGNTSHFRCPYHGWTYSN-TGSLVGVPAGK 128
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 32.8 bits (73), Expect = 0.85
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITD 76
++VG G +G+ C LR+ + D
Sbjct: 4 VLIVGAGMTGSLCAALLRRQTSGPLYLAVWD 34
Score = 32.8 bits (73), Expect = 0.85
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITD 628
++VG G +G+ C LR+ + D
Sbjct: 4 VLIVGAGMTGSLCAALLRRQTSGPLYLAVWD 34
Score = 32.8 bits (73), Expect = 0.85
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITD 1099
++VG G +G+ C LR+ + D
Sbjct: 4 VLIVGAGMTGSLCAALLRRQTSGPLYLAVWD 34
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 32.8 bits (75), Expect = 0.87
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
+V+G GP+G + ++GF
Sbjct: 9 LVIGAGPAGTVAASLVNKSGF 29
Score = 32.8 bits (75), Expect = 0.87
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
+V+G GP+G + ++GF
Sbjct: 9 LVIGAGPAGTVAASLVNKSGF 29
Score = 32.8 bits (75), Expect = 0.87
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
+V+G GP+G + ++GF
Sbjct: 9 LVIGAGPAGTVAASLVNKSGF 29
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 32.1 bits (73), Expect = 1.2
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 25/187 (13%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI--KADSILLRT 102
V+GG + L + L + VK + + DSI+L
Sbjct: 9 KIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPV 68
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD---- 158
+ + + + + + + + + YL ++
Sbjct: 69 SATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFER 128
Query: 159 ----GVNKVFYLRTVEDANNIA----PHITPESNVVVIGSSFIGMEAA----AFCASKVK 206
N + TVE +A + S V V+G GM A A A
Sbjct: 129 DDIAIYNSI---PTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGA---- 181
Query: 207 SVTVVGR 213
+V V R
Sbjct: 182 NVKVGAR 188
Score = 32.1 bits (73), Expect = 1.2
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 25/187 (13%)
Query: 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI--KADSILLRT 654
V+GG + L + L + VK + + DSI+L
Sbjct: 9 KIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPV 68
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD---- 710
+ + + + + + + + + YL ++
Sbjct: 69 SATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFER 128
Query: 711 ----GVNKVFYLRTVEDANNIA----PHITPESNVVVIGSSFIGMEAA----AFCASKVK 758
N + TVE +A + S V V+G GM A A A
Sbjct: 129 DDIAIYNSI---PTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGA---- 181
Query: 759 SVTVVGR 765
+V V R
Sbjct: 182 NVKVGAR 188
Score = 32.1 bits (73), Expect = 1.2
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 25/187 (13%)
Query: 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI--KADSILLRT 1125
V+GG + L + L + VK + + DSI+L
Sbjct: 9 KIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPV 68
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD---- 1181
+ + + + + + + + + YL ++
Sbjct: 69 SATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFER 128
Query: 1182 ----GVNKVFYLRTVEDANNIA----PHITPESNVVVIGSSFIGMEAA----AFCASKVK 1229
N + TVE +A + S V V+G GM A A A
Sbjct: 129 DDIAIYNSI---PTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGA---- 181
Query: 1230 SVTVVGR 1236
+V V R
Sbjct: 182 NVKVGAR 188
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.8 bits (72), Expect = 1.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 47 IVVGGGPSGATCVETLRQNGFT 68
IVVG G SG + + L + G T
Sbjct: 8 IVVGAGMSGISAAKRLSEAGIT 29
Score = 31.8 bits (72), Expect = 1.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 599 IVVGGGPSGATCVETLRQNGFT 620
IVVG G SG + + L + G T
Sbjct: 8 IVVGAGMSGISAAKRLSEAGIT 29
Score = 31.8 bits (72), Expect = 1.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1070 IVVGGGPSGATCVETLRQNGFT 1091
IVVG G SG + + L + G T
Sbjct: 8 IVVGAGMSGISAAKRLSEAGIT 29
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 31.8 bits (72), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
IV+GGGP G+T + G
Sbjct: 11 IVIGGGPGGSTLASFVAMRGH 31
Score = 31.8 bits (72), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
IV+GGGP G+T + G
Sbjct: 11 IVIGGGPGGSTLASFVAMRGH 31
Score = 31.8 bits (72), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
IV+GGGP G+T + G
Sbjct: 11 IVIGGGPGGSTLASFVAMRGH 31
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 31.6 bits (71), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 46 FIVVGGGPSGATCVETLRQNGF 67
+I+VG G GA C L++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNK 25
Score = 31.6 bits (71), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 598 FIVVGGGPSGATCVETLRQNGF 619
+I+VG G GA C L++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNK 25
Score = 31.6 bits (71), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1069 FIVVGGGPSGATCVETLRQNGF 1090
+I+VG G GA C L++
Sbjct: 4 YIIVGSGLFGAVCANELKKLNK 25
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske
non-heme dioxygenase, substrate specificity iron-
sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A*
2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A
1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Length = 447
Score = 31.7 bits (72), Expect = 2.2
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 514 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 554
C H G LV G+ + C +HG + G+++ P
Sbjct: 79 CRHRGKTLVHAEAGNAKGFVCGYHGWGYGS-NGELQSVPFEK 119
Score = 31.7 bits (72), Expect = 2.2
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 985 CSHYGAPLVKGSLGDGRV-RCPWHGACFNIATGDIEDFPGMD 1025
C H G LV G+ + C +HG + G+++ P
Sbjct: 79 CRHRGKTLVHAEAGNAKGFVCGYHGWGYGS-NGELQSVPFEK 119
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 31.5 bits (70), Expect = 2.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 26 LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 67
L N + L + I++G G SG L+ G
Sbjct: 261 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 302
Score = 31.5 bits (70), Expect = 2.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 578 LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 619
L N + L + I++G G SG L+ G
Sbjct: 261 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 302
Score = 31.5 bits (70), Expect = 2.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 1049 LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 1090
L N + L + I++G G SG L+ G
Sbjct: 261 LINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGM 302
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 31.2 bits (70), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGF 67
+K ++VG G SGA L + G
Sbjct: 3 SKK-ILIVGAGFSGAVIGRQLAEKGH 27
Score = 31.2 bits (70), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGF 619
+K ++VG G SGA L + G
Sbjct: 3 SKK-ILIVGAGFSGAVIGRQLAEKGH 27
Score = 31.2 bits (70), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGF 1090
+K ++VG G SGA L + G
Sbjct: 3 SKK-ILIVGAGFSGAVIGRQLAEKGH 27
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 31.5 bits (71), Expect = 2.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
++GGGP+G+ TL + G
Sbjct: 27 AIIGGGPAGSVAGLTLHKLGH 47
Score = 31.5 bits (71), Expect = 2.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
++GGGP+G+ TL + G
Sbjct: 27 AIIGGGPAGSVAGLTLHKLGH 47
Score = 31.5 bits (71), Expect = 2.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
++GGGP+G+ TL + G
Sbjct: 27 AIIGGGPAGSVAGLTLHKLGH 47
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 30.9 bits (70), Expect = 3.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 38 LSSGNKDTFIVVGGGPSGATCVETLRQNGF 67
+ + +D +VG GPSG LR+ G
Sbjct: 1 VPTLQRDV-AIVGAGPSGLAAATALRKAGL 29
Score = 30.9 bits (70), Expect = 3.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGF 619
+ + +D +VG GPSG LR+ G
Sbjct: 1 VPTLQRDV-AIVGAGPSGLAAATALRKAGL 29
Score = 30.9 bits (70), Expect = 3.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1061 LSSGNKDTFIVVGGGPSGATCVETLRQNGF 1090
+ + +D +VG GPSG LR+ G
Sbjct: 1 VPTLQRDV-AIVGAGPSGLAAATALRKAGL 29
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 30.4 bits (69), Expect = 3.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 67
M + ++ G S C+ LR +
Sbjct: 1 MGLIDVAKSRHVVICGWSESTLECLRELRGSEV 33
Score = 30.4 bits (69), Expect = 3.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 619
M + ++ G S C+ LR +
Sbjct: 1 MGLIDVAKSRHVVICGWSESTLECLRELRGSEV 33
Score = 30.4 bits (69), Expect = 3.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 1090
M + ++ G S C+ LR +
Sbjct: 1 MGLIDVAKSRHVVICGWSESTLECLRELRGSEV 33
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 31.1 bits (70), Expect = 3.5
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241
+V+V+G + + K ++ + ITK + +
Sbjct: 214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIY 271
Score = 31.1 bits (70), Expect = 3.5
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793
+V+V+G + + K ++ + ITK + +
Sbjct: 214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIY 271
Score = 31.1 bits (70), Expect = 3.5
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 1264
+V+V+G + + K ++ + ITK + +
Sbjct: 214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIY 271
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 30.7 bits (70), Expect = 3.8
Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 43/107 (40%)
Query: 60 ETLRQNGFTGKLYFITDENFLPYDRVK-LSKQL---------------DIKADSILLRTE 103
+ +++NGF D ++ ++ Q+ D+K ++IL
Sbjct: 105 DFIKENGFLP----------FRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQS 154
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 150
++ + + + + ++ + + + IK+ +DF GS+
Sbjct: 155 DYTEAYNPKIKRDERTLINPD-----IKV-----VDF-------GSA 184
Score = 30.7 bits (70), Expect = 3.8
Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 43/107 (40%)
Query: 612 ETLRQNGFTGKLYFITDENFLPYDRVK-LSKQL---------------DIKADSILLRTE 655
+ +++NGF D ++ ++ Q+ D+K ++IL
Sbjct: 105 DFIKENGFLP----------FRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQS 154
Query: 656 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 702
++ + + + + ++ + + + IK+ +DF GS+
Sbjct: 155 DYTEAYNPKIKRDERTLINPD-----IKV-----VDF-------GSA 184
Score = 30.7 bits (70), Expect = 3.8
Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 43/107 (40%)
Query: 1083 ETLRQNGFTGKLYFITDENFLPYDRVK-LSKQL---------------DIKADSILLRTE 1126
+ +++NGF D ++ ++ Q+ D+K ++IL
Sbjct: 105 DFIKENGFLP----------FRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQS 154
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 1173
++ + + + + ++ + + + IK+ +DF GS+
Sbjct: 155 DYTEAYNPKIKRDERTLINPD-----IKV-----VDF-------GSA 184
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 30.2 bits (67), Expect = 5.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 39 SSGNKDTFIVVGGGPSGATCVETLRQNGF 67
+ +++G GP+G L + G+
Sbjct: 5 AELLTPKIVIIGAGPTGLGAAVRLTELGY 33
Score = 30.2 bits (67), Expect = 5.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 591 SSGNKDTFIVVGGGPSGATCVETLRQNGF 619
+ +++G GP+G L + G+
Sbjct: 5 AELLTPKIVIIGAGPTGLGAAVRLTELGY 33
Score = 30.2 bits (67), Expect = 5.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 1062 SSGNKDTFIVVGGGPSGATCVETLRQNGF 1090
+ +++G GP+G L + G+
Sbjct: 5 AELLTPKIVIIGAGPTGLGAAVRLTELGY 33
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A
{Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Length = 266
Score = 29.9 bits (68), Expect = 5.2
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 405 KVLAILTVGMDPLAAQFAEQVLEFPYSSLPH 435
+ +L G A E V E P +P
Sbjct: 31 DMALVLGSGWGGAAELLGEVVAEVPTHEIPG 61
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange,
lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Length = 221
Score = 29.7 bits (67), Expect = 6.2
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 520 PLVKGSLGDGRVRCPWHGACFNIATGDIEDF 550
P V+ L + + G ++ G E +
Sbjct: 181 PFVREGLVNKTLAL--KGGYYDFVKGSFELW 209
Score = 29.7 bits (67), Expect = 6.2
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 991 PLVKGSLGDGRVRCPWHGACFNIATGDIEDF 1021
P V+ L + + G ++ G E +
Sbjct: 181 PFVREGLVNKTLAL--KGGYYDFVKGSFELW 209
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 29.8 bits (67), Expect = 6.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
IVVGGG SG L G
Sbjct: 5 IVVGGGFSGLKAARDLTNAGK 25
Score = 29.8 bits (67), Expect = 6.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
IVVGGG SG L G
Sbjct: 5 IVVGGGFSGLKAARDLTNAGK 25
Score = 29.8 bits (67), Expect = 6.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
IVVGGG SG L G
Sbjct: 5 IVVGGGFSGLKAARDLTNAGK 25
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 30.0 bits (68), Expect = 7.0
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 43/107 (40%)
Query: 60 ETLRQNGFTGKLYFITDENFLPYDRVK-LSKQL---------------DIKADSILLRTE 103
E L++N F P V+ ++ QL D+K ++IL
Sbjct: 110 EFLKENNFQP----------YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNS 159
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 150
EF + H +K + ++ I++ DF GS+
Sbjct: 160 EFETLYNEHKSCEEKSVKNTS-----IRV-----ADF-------GSA 189
Score = 30.0 bits (68), Expect = 7.0
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 43/107 (40%)
Query: 612 ETLRQNGFTGKLYFITDENFLPYDRVK-LSKQL---------------DIKADSILLRTE 655
E L++N F P V+ ++ QL D+K ++IL
Sbjct: 110 EFLKENNFQP----------YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNS 159
Query: 656 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 702
EF + H +K + ++ I++ DF GS+
Sbjct: 160 EFETLYNEHKSCEEKSVKNTS-----IRV-----ADF-------GSA 189
Score = 30.0 bits (68), Expect = 7.0
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 43/107 (40%)
Query: 1083 ETLRQNGFTGKLYFITDENFLPYDRVK-LSKQL---------------DIKADSILLRTE 1126
E L++N F P V+ ++ QL D+K ++IL
Sbjct: 110 EFLKENNFQP----------YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNS 159
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 1173
EF + H +K + ++ I++ DF GS+
Sbjct: 160 EFETLYNEHKSCEEKSVKNTS-----IRV-----ADF-------GSA 189
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding,
nucleus, zinc; 2.04A {Saccharomyces cerevisiae}
Length = 216
Score = 29.3 bits (66), Expect = 7.3
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 520 PLVKGSLGDGRVRCPWHGACFNIATGDIEDF 550
P V+ ++ +G ++ +G +N+ G ++
Sbjct: 179 PTVQTAVQNGELQV--YGLLYNVEDGLLQTV 207
Score = 29.3 bits (66), Expect = 7.3
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 991 PLVKGSLGDGRVRCPWHGACFNIATGDIEDF 1021
P V+ ++ +G ++ +G +N+ G ++
Sbjct: 179 PTVQTAVQNGELQV--YGLLYNVEDGLLQTV 207
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.5 bits (67), Expect = 8.7
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 177 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 214
+ VVIG IG A + A + K+ + G
Sbjct: 12 RAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG 49
Score = 29.5 bits (67), Expect = 8.7
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 729 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 766
+ VVIG IG A + A + K+ + G
Sbjct: 12 RAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG 49
Score = 29.5 bits (67), Expect = 8.7
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 1200 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 1237
+ VVIG IG A + A + K+ + G
Sbjct: 12 RAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG 49
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 29.8 bits (67), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 47 IVVGGGPSGATCVETLRQNGF 67
+VVGGG SG + L +G
Sbjct: 8 VVVGGGISGMAAAKLLHDSGL 28
Score = 29.8 bits (67), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 599 IVVGGGPSGATCVETLRQNGF 619
+VVGGG SG + L +G
Sbjct: 8 VVVGGGISGMAAAKLLHDSGL 28
Score = 29.8 bits (67), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1070 IVVGGGPSGATCVETLRQNGF 1090
+VVGGG SG + L +G
Sbjct: 8 VVVGGGISGMAAAKLLHDSGL 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,427,466
Number of extensions: 1460800
Number of successful extensions: 5958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5151
Number of HSP's successfully gapped: 511
Length of query: 1466
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1360
Effective length of database: 3,742,167
Effective search space: 5089347120
Effective search space used: 5089347120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.3 bits)