BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2956
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 355 bits (912), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 168/183 (91%), Positives = 173/183 (94%)
Query: 13 RQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72
+ YFDNAPLM VPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE
Sbjct: 69 QHYFDNAPLMTVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 128
Query: 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS 132
EIEEACKRIK+E+DNLGPE G+LK IPLYSTLPP +QQRIFE AP NK NG IGRKVVVS
Sbjct: 129 EIEEACKRIKREVDNLGPEVGDLKTIPLYSTLPPAMQQRIFEHAPPNKANGAIGRKVVVS 188
Query: 133 TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR GRAGRTRPGK
Sbjct: 189 TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRTRPGK 248
Query: 193 CFR 195
CFR
Sbjct: 249 CFR 251
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR
Sbjct: 185 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 237
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 334 bits (856), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/181 (86%), Positives = 167/181 (92%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YFDN PL+ +PGRTHPVEIFYTPEPERDYLEAAIRTV+QIHMCEE EGD+LLFLTGQEEI
Sbjct: 303 YFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEI 362
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+EACKRIK+E+D+LGPE G++K IPLYSTLPP QQRIFE P K NG IGRKVVVSTN
Sbjct: 363 DEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTN 422
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV+ ISKASAQQRAGRAGRTRPGKCF
Sbjct: 423 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCF 482
Query: 195 R 195
R
Sbjct: 483 R 483
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/54 (96%), Positives = 53/54 (98%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV+ ISKASAQQRA
Sbjct: 417 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRA 470
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 334 bits (856), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/181 (86%), Positives = 167/181 (92%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YFDN PL+ +PGRTHPVEIFYTPEPERDYLEAAIRTV+QIHMCEE EGD+LLFLTGQEEI
Sbjct: 303 YFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEI 362
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+EACKRIK+E+D+LGPE G++K IPLYSTLPP QQRIFE P K NG IGRKVVVSTN
Sbjct: 363 DEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTN 422
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV+ ISKASAQQRAGRAGRTRPGKCF
Sbjct: 423 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCF 482
Query: 195 R 195
R
Sbjct: 483 R 483
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/54 (96%), Positives = 53/54 (98%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV+ ISKASAQQRA
Sbjct: 417 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRA 470
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 334 bits (856), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/181 (86%), Positives = 167/181 (92%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YFDN PL+ +PGRTHPVEIFYTPEPERDYLEAAIRTV+QIHMCEE EGD+LLFLTGQEEI
Sbjct: 303 YFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEI 362
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+EACKRIK+E+D+LGPE G++K IPLYSTLPP QQRIFE P K NG IGRKVVVSTN
Sbjct: 363 DEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTN 422
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV+ ISKASAQQRAGRAGRTRPGKCF
Sbjct: 423 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCF 482
Query: 195 R 195
R
Sbjct: 483 R 483
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/54 (96%), Positives = 53/54 (98%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV+ ISKASAQQRA
Sbjct: 417 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRA 470
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 314 bits (804), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 147/183 (80%), Positives = 163/183 (89%)
Query: 13 RQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72
++YF++ PL++VPGRT PVEIF+TP E+DYLEAAIRTV+QIHM EEVEGD+LLFLTGQE
Sbjct: 245 QRYFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQE 304
Query: 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS 132
EIEEACKRI +EI LG +AG L CIPLYSTLPP QQRIFE AP N+PNG I RK V+S
Sbjct: 305 EIEEACKRIDREIQALGADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVIS 364
Query: 133 TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192
TNIAETSLTIDGVVFVIDPGF+KQKVYNPRIRVESLLV PISKASA QRAGRAGRT+PGK
Sbjct: 365 TNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGK 424
Query: 193 CFR 195
CFR
Sbjct: 425 CFR 427
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 177 SAQQRAGR-AGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE 235
+AQQR A RP V+STNIAETSLTIDGVVFVIDPGF+KQKVYNPRIRVE
Sbjct: 339 AAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVE 398
Query: 236 SLLVSPISKASAQQRA 251
SLLV PISKASA QRA
Sbjct: 399 SLLVCPISKASAMQRA 414
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 297 bits (760), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 173/223 (77%), Gaps = 17/223 (7%)
Query: 5 ATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDV 64
AT ++YF APLM VPGR HPVEIFYT EPERDYLEAAIRTVVQIHMCE GD+
Sbjct: 224 ATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP-PGDI 282
Query: 65 LLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGG 124
L+FLTG+EEIE+AC++I KE+ NLG + G +K +PLYSTLPP +QQ+IF+ AP GG
Sbjct: 283 LVFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGG 342
Query: 125 -IGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAG 183
GRK+VVSTNIAETSLTIDG+V+VIDPGFAKQKVYNPRIRVESLLVSPISKASA QR+G
Sbjct: 343 PAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSG 402
Query: 184 RAGRTRPGKCFR---------------YIVVVSTNIAETSLTI 211
RAGRTRPGKCFR Y ++ +N+A T LT+
Sbjct: 403 RAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTL 445
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/210 (67%), Positives = 166/210 (79%), Gaps = 17/210 (8%)
Query: 1 MQIFATRRQHLT-------------RQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAA 47
M+ ATRR L ++YF +APL+ VPGRT+PVEI+YT EPERDYLEAA
Sbjct: 213 MKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAA 272
Query: 48 IRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPE--AGELKCIPLYSTLP 105
+RTV+QIH+ EE GD+L+FLTG+EEIE+AC++I E D+L E AG LK PLY +LP
Sbjct: 273 LRTVLQIHV-EEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLP 331
Query: 106 PNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV 165
PN QQRIFE P + G GRKVV+STNIAETSLTIDG+V+V+DPGF+KQK+YNPRIRV
Sbjct: 332 PNQQQRIFEPTPEDT-KSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRV 390
Query: 166 ESLLVSPISKASAQQRAGRAGRTRPGKCFR 195
ESLLVSPISKASAQQRAGRAGRTRPGKCFR
Sbjct: 391 ESLLVSPISKASAQQRAGRAGRTRPGKCFR 420
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/54 (88%), Positives = 54/54 (100%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV+STNIAETSLTIDG+V+V+DPGF+KQK+YNPRIRVESLLVSPISKASAQQRA
Sbjct: 354 VVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRA 407
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/185 (70%), Positives = 157/185 (84%), Gaps = 4/185 (2%)
Query: 13 RQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72
++YF++APL+ VPGRT+PVE++YTPE +RDYL++AIRTV+QIH EE GD+LLFLTG++
Sbjct: 256 QRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA-GDILLFLTGED 314
Query: 73 EIEEACKRIKKEIDNLGPE--AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVV 130
EIE+A ++I E D L E G L PLY +LPP+ QQRIFE AP + NG GRKVV
Sbjct: 315 EIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH-NGRPGRKVV 373
Query: 131 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190
+STNIAETSLTIDG+V+V+DPGF+KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP
Sbjct: 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433
Query: 191 GKCFR 195
GKCFR
Sbjct: 434 GKCFR 438
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 140/183 (76%), Gaps = 11/183 (6%)
Query: 13 RQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72
++YF+NAPL+ VPGR HPVEIFYT E +DYLE+A+RTV+ IH E GD+L+FLTG+E
Sbjct: 239 QKYFENAPLIKVPGRLHPVEIFYTEEAAKDYLESAVRTVIDIH-TNEGTGDILVFLTGEE 297
Query: 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS 132
EIE+ C +I++E G +K +PLYS+LP Q +IF+ RK +VS
Sbjct: 298 EIEDTCAKIQRETRERG--LPPMKTLPLYSSLPIYQQSKIFDTCKE--------RKCIVS 347
Query: 133 TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192
TNIAETSLTIDG+VFV+DPGF+KQK YNPR RVESLLV+PISKASA QRAGRAGRTRPGK
Sbjct: 348 TNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRAGRAGRTRPGK 407
Query: 193 CFR 195
CFR
Sbjct: 408 CFR 410
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 193 CFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
C +VSTNIAETSLTIDG+VFV+DPGF+KQK YNPR RVESLLV+PISKASA QRA
Sbjct: 339 CKERKCIVSTNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRA 397
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 155/226 (68%), Gaps = 24/226 (10%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
+YF AP+ +PGRT PVEI YT EPE DYLEAA TV+QIH+ E GDVL+FLTGQEE
Sbjct: 702 EYFLEAPIFTIPGRTFPVEILYTREPESDYLEAAHITVMQIHLTEP-PGDVLVFLTGQEE 760
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
I+ +C+ + + + ++GP+ EL +P+Y LP +Q RIF+ APA K RKVV++T
Sbjct: 761 IDTSCEVLYERMKSMGPDVPELIILPVYGALPSEMQTRIFDPAPAGK------RKVVIAT 814
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETSLTIDG+ +V+DPGF KQK+YNP+ ++SL+V+PIS+A+A+QR+GRAGRT PGKC
Sbjct: 815 NIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGPGKC 874
Query: 194 FRYIV---------------VVSTNIAETSLTID--GVVFVIDPGF 222
+R + TN+A T L + G+ +ID F
Sbjct: 875 YRLYTERAFRDEMLPTPVPEIQRTNLASTLLQLKAMGINNLIDFDF 920
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 52/62 (83%)
Query: 190 PGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQ 249
P + VV++TNIAETSLTIDG+ +V+DPGF KQK+YNP+ ++SL+V+PIS+A+A+Q
Sbjct: 802 PAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQ 861
Query: 250 RA 251
R+
Sbjct: 862 RS 863
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 147/204 (72%), Gaps = 14/204 (6%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
QYF AP+ +PGRT+PVEI YT EPE DYL+A++ TV+QIH+ E GD+L+FLTGQEE
Sbjct: 751 QYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP-PGDILVFLTGQEE 809
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
I+ AC+ + + + +LGP+ EL +P+YS LP +Q RIF+ AP RKVV++T
Sbjct: 810 IDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPG------SRKVVIAT 863
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETSLTIDG+ +V+DPGF KQKVYN + ++ L+V+PIS+A A+QRAGRAGRT PGKC
Sbjct: 864 NIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKC 923
Query: 194 FRYIV-------VVSTNIAETSLT 210
+R +++TN+ E T
Sbjct: 924 YRLYTERAYRDEMLTTNVPEIQRT 947
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 47/54 (87%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV++TNIAETSLTIDG+ +V+DPGF KQKVYN + ++ L+V+PIS+A A+QRA
Sbjct: 859 VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRA 912
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 147/204 (72%), Gaps = 14/204 (6%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
QYF AP+ +PGRT+PVEI YT EPE DYL+A++ TV+QIH+ E GD+L+FLTGQEE
Sbjct: 727 QYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP-PGDILVFLTGQEE 785
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
I+ AC+ + + + +LGP+ EL +P+YS LP +Q RIF+ AP RKVV++T
Sbjct: 786 IDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPG------SRKVVIAT 839
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETSLTIDG+ +V+DPGF KQKVYN + ++ L+V+PIS+A A+QRAGRAGRT PGKC
Sbjct: 840 NIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKC 899
Query: 194 FRYIV-------VVSTNIAETSLT 210
+R +++TN+ E T
Sbjct: 900 YRLYTERAYRDEMLTTNVPEIQRT 923
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 47/54 (87%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV++TNIAETSLTIDG+ +V+DPGF KQKVYN + ++ L+V+PIS+A A+QRA
Sbjct: 835 VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRA 888
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/181 (58%), Positives = 136/181 (75%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YF N + +PGRT PVEI YT +PE DYL+AA+ TV+QIH+ E EGD+L+FLTGQEEI
Sbjct: 678 YFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEP-EGDILVFLTGQEEI 736
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+ AC+ + + + LG EL +P+YS LP +Q RIF+ P K RKVVV+TN
Sbjct: 737 DSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGK------RKVVVATN 790
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAE SLTIDG+ +V+DPGFAKQ VYNP+ +ESL+++PIS+ASA+QRAGRAGRT PGKC+
Sbjct: 791 IAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCY 850
Query: 195 R 195
R
Sbjct: 851 R 851
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 49/54 (90%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVV+TNIAE SLTIDG+ +V+DPGFAKQ VYNP+ +ESL+++PIS+ASA+QRA
Sbjct: 785 VVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRA 838
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 133/181 (73%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YFD AP N+PGR + V YT PE DYL+AA+ TV+QIH+ E + GD+L+FLTGQEE+
Sbjct: 630 YFDGAPTFNIPGRKYEVTTHYTQAPEADYLDAAVVTVLQIHITEPL-GDILVFLTGQEEV 688
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
++A + ++ LG + EL +YSTLP +LQ +IFE P N RKVV++TN
Sbjct: 689 DQAAEMLQTRTRGLGTKIKELIITRIYSTLPTDLQAKIFEPTPPN------ARKVVLATN 742
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTIDG+++VIDPGF KQK++NPR +ESL+++P+S+ASA QR GRAGR PGKCF
Sbjct: 743 IAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCF 802
Query: 195 R 195
R
Sbjct: 803 R 803
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 49/53 (92%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
VV++TNIAETSLTIDG+++VIDPGF KQK++NPR +ESL+++P+S+ASA QR
Sbjct: 737 VVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQR 789
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 210 bits (535), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 132/181 (72%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
+FD+AP+ +PGR PV+IFYT PE DYLEA + +V+QIH+ + GD+L+FLTGQEEI
Sbjct: 566 FFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQP-PGDILVFLTGQEEI 624
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E AC+ ++ LG + EL +P+Y+ LP ++Q RIF+ P RKVVV+TN
Sbjct: 625 EAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPG------ARKVVVATN 678
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTI+G+++V+DPGF KQK YNPR +ESL V+P SKASA QRAGRAGR GKCF
Sbjct: 679 IAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCF 738
Query: 195 R 195
R
Sbjct: 739 R 739
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 47/54 (87%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVV+TNIAETSLTI+G+++V+DPGF KQK YNPR +ESL V+P SKASA QRA
Sbjct: 673 VVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRA 726
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 210 bits (535), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 132/181 (72%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
+FD+AP+ +PGR PV+IFYT PE DYLEA + +V+QIH+ + GD+L+FLTGQEEI
Sbjct: 563 FFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQP-PGDILVFLTGQEEI 621
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E AC+ ++ LG + EL +P+Y+ LP ++Q RIF+ P RKVVV+TN
Sbjct: 622 EAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPG------ARKVVVATN 675
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTI+G+++V+DPGF KQK YNPR +ESL V+P SKASA QRAGRAGR GKCF
Sbjct: 676 IAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCF 735
Query: 195 R 195
R
Sbjct: 736 R 736
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 47/54 (87%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVV+TNIAETSLTI+G+++V+DPGF KQK YNPR +ESL V+P SKASA QRA
Sbjct: 670 VVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRA 723
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 210 bits (535), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 132/181 (72%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
+FD+AP+ +PGR PV+IFYT PE DYLEA + +V+QIH+ + GD+L+FLTGQEEI
Sbjct: 567 FFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQP-PGDILVFLTGQEEI 625
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E AC+ ++ LG + EL +P+Y+ LP ++Q RIF+ P RKVVV+TN
Sbjct: 626 EAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPG------ARKVVVATN 679
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTI+G+++V+DPGF KQK YNPR +ESL V+P SKASA QRAGRAGR GKCF
Sbjct: 680 IAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCF 739
Query: 195 R 195
R
Sbjct: 740 R 740
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 47/54 (87%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVV+TNIAETSLTI+G+++V+DPGF KQK YNPR +ESL V+P SKASA QRA
Sbjct: 674 VVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRA 727
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 210 bits (534), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 135/181 (74%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YF P+ +PGR++PVEI YT +PE DYL+AA+ TV+QIH+ E GD+L+FLTGQEEI
Sbjct: 674 YFYKCPIFTIPGRSYPVEIMYTKQPEADYLDAALMTVMQIHLSEG-PGDILVFLTGQEEI 732
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+ +C+ + + LG EL +P+YS LP +Q RIFE AP GRKVV++TN
Sbjct: 733 DTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPG------GRKVVIATN 786
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLTIDG+ +V+DPGF KQ ++P++ ++SL+V+PIS+A A+QR+GRAGRT PGKC+
Sbjct: 787 IAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRTGPGKCY 846
Query: 195 R 195
R
Sbjct: 847 R 847
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 48/54 (88%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV++TNIAETSLTIDG+ +V+DPGF KQ ++P++ ++SL+V+PIS+A A+QR+
Sbjct: 781 VVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRS 834
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 139/182 (76%), Gaps = 7/182 (3%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
+YF NA L +PGRT PV+I YT +PE DYL+A++ TV+QIH+ E GD+LLFLTGQEE
Sbjct: 670 KYFMNAQLFIIPGRTFPVDIRYTKDPEADYLDASLITVMQIHLSEP-PGDILLFLTGQEE 728
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
I+ AC+ + + + +LG +L +P+YS LP +Q +IFE AP RKVV++T
Sbjct: 729 IDAACQILYERMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPG------SRKVVIAT 782
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETSLTIDG+ +VIDPGF+KQK +NP+ ++SL+V+PIS+A+A+QR+GRAGRT PGKC
Sbjct: 783 NIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRTGPGKC 842
Query: 194 FR 195
+R
Sbjct: 843 YR 844
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 50/54 (92%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV++TNIAETSLTIDG+ +VIDPGF+KQK +NP+ ++SL+V+PIS+A+A+QR+
Sbjct: 778 VVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRS 831
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 128/182 (70%), Gaps = 7/182 (3%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
+YF N P++N+PG+T PVE+ Y+ P+ DY+EAA+ V+ IH+ E GD+L+FLTGQEE
Sbjct: 645 EYFLNCPIINIPGKTFPVEVLYSQTPQMDYIEAALDCVIDIHI-NEGPGDILVFLTGQEE 703
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
I+ C+ + + LG GEL +P+YS LP +Q +IFE P RKVV +T
Sbjct: 704 IDSCCEILYDRVKTLGDSIGELLILPVYSALPSEIQSKIFEPTPKG------SRKVVFAT 757
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETS+TIDG+ +V+DPGFAK +YN R +E L+VSPIS+A A QR GRAGRT PGKC
Sbjct: 758 NIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKC 817
Query: 194 FR 195
+R
Sbjct: 818 YR 819
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
VV +TNIAETS+TIDG+ +V+DPGFAK +YN R +E L+VSPIS+A A QR
Sbjct: 753 VVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQR 805
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 131/181 (72%), Gaps = 6/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
+FD+AP+ +PGR PV+I+YT PE DY++AAI T++QIH+ + + GD+L+FLTGQEEI
Sbjct: 528 FFDDAPIFRIPGRRFPVDIYYTQAPEADYVDAAIVTIMQIHLTQPLPGDILVFLTGQEEI 587
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E + + + LG + EL +P+Y+ LP +LQ +IFE P + RKVV++TN
Sbjct: 588 ETVQEALMERSKALGSKIKELIPLPVYANLPSDLQAKIFEPTPKD------ARKVVLATN 641
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETS+TIDG+ +VIDPGF+KQ ++ R VE L V ISKA+A QRAGRAGRT PGKCF
Sbjct: 642 IAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCF 701
Query: 195 R 195
R
Sbjct: 702 R 702
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV++TNIAETS+TIDG+ +VIDPGF+KQ ++ R VE L V ISKA+A QRA
Sbjct: 636 VVLATNIAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRA 689
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 136/206 (66%), Gaps = 17/206 (8%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
YFD AP+ VPGR +PV+I+YTP+PE +Y++AAI T++QIH + GD+L+FLTGQ+EI
Sbjct: 582 YFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQPA-GDILVFLTGQDEI 640
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E + +++ LG E+ P+Y+ LP LQ +IF+ P RKVV++TN
Sbjct: 641 ELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPG------ARKVVLATN 694
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETS+TIDGV FVID GF KQ +YNPR +ESL+ P S+ASA QRAGRAGR PGKCF
Sbjct: 695 IAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCF 754
Query: 195 RYI----------VVVSTNIAETSLT 210
R +V S I T+LT
Sbjct: 755 RLYTRRTYNNELDMVTSPEIQRTNLT 780
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV++TNIAETS+TIDGV FVID GF KQ +YNPR +ESL+ P S+ASA QRA
Sbjct: 689 VVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRA 742
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 131/178 (73%), Gaps = 8/178 (4%)
Query: 18 NAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEA 77
N P +PGRT PVE+F+ P DY++AA++ V IH+ ++GD+L+F+ GQE+IE
Sbjct: 608 NCPTFTIPGRTFPVELFHARTPVEDYVDAAVKQAVTIHLGG-MDGDILIFMPGQEDIECT 666
Query: 78 CKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAE 137
C+ IK+++ L EA L +P+YS LP +LQ +IF+ AP GG+ RK +V+TNIAE
Sbjct: 667 CEMIKEKLGEL-DEAPPLAVLPIYSQLPSDLQAKIFQRAP-----GGM-RKAIVATNIAE 719
Query: 138 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 195
TSLT+DG++FVIDPGF K KVYNPRI +++L + P+S+ASA QR GRAGRT PG+C+R
Sbjct: 720 TSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQCYR 777
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 46/53 (86%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
+V+TNIAETSLT+DG++FVIDPGF K KVYNPRI +++L + P+S+ASA QR
Sbjct: 711 AIVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQR 763
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 123/182 (67%), Gaps = 6/182 (3%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
++FDN P+ NVPGR +PV+I YT +PE +Y+ AAI T+ QIH + + GD+L+FLTGQEE
Sbjct: 388 EFFDNCPIFNVPGRRYPVDIHYTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEE 447
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
IE ++++ + LG ++ P+Y+ LP Q +IF+ P N RKVV++T
Sbjct: 448 IERTKTKLEEIMSKLGSRTKQMIITPIYANLPQEQQLKIFQPTPEN------CRKVVLAT 501
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETSLTIDG+ +VIDPGF K+ Y P + LL P S+AS QRAGRAGR PGKC
Sbjct: 502 NIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGKC 561
Query: 194 FR 195
FR
Sbjct: 562 FR 563
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 164 RVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFA 223
R + ++++PI Q++ + + P C + VV++TNIAETSLTIDG+ +VIDPGF
Sbjct: 465 RTKQMIITPIYANLPQEQQLKIFQPTPENCRK--VVLATNIAETSLTIDGIRYVIDPGFV 522
Query: 224 KQKVYNPRIRVESLLVSPISKASAQQRA 251
K+ Y P + LL P S+AS QRA
Sbjct: 523 KENSYVPSTGMTQLLTVPCSRASVDQRA 550
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 131/181 (72%), Gaps = 8/181 (4%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
+F N P+ ++PGRT PV+I ++ P+ DY+EAA++ +Q+H+ GD+L+F+ GQE+I
Sbjct: 695 FFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSG-APGDILIFMPGQEDI 753
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E +I + ++ L A L +P+YS LP +LQ +IF+ AP G+ RK +V+TN
Sbjct: 754 EVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAP-----DGV-RKCIVATN 806
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLT+DG++FVID G+ K KV+NPRI +++L + PIS+A+A QR+GRAGRT PG+CF
Sbjct: 807 IAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCF 866
Query: 195 R 195
R
Sbjct: 867 R 867
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 46/53 (86%)
Query: 199 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
+V+TNIAETSLT+DG++FVID G+ K KV+NPRI +++L + PIS+A+A QR+
Sbjct: 802 IVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 131/181 (72%), Gaps = 8/181 (4%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
+F N P+ ++PGRT PV+I ++ P+ DY+EAA++ +Q+H+ GD+L+F+ GQE+I
Sbjct: 695 FFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSG-APGDILIFMPGQEDI 753
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
E +I + ++ L A L +P+YS LP +LQ +IF+ AP G+ RK +V+TN
Sbjct: 754 EVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAP-----DGV-RKCIVATN 806
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
IAETSLT+DG++FVID G+ K KV+NPRI +++L + PIS+A+A QR+GRAGRT PG+CF
Sbjct: 807 IAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCF 866
Query: 195 R 195
R
Sbjct: 867 R 867
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 46/53 (86%)
Query: 199 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
+V+TNIAETSLT+DG++FVID G+ K KV+NPRI +++L + PIS+A+A QR+
Sbjct: 802 IVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 131/191 (68%), Gaps = 8/191 (4%)
Query: 5 ATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDV 64
AT +F AP +PGRT+PV+I + P DY+EAA+R V+QIH+ + GD+
Sbjct: 645 ATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPA-GDI 703
Query: 65 LLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGG 124
L+F+TGQE+IE C+ I ++ L +A L +P+YS +P +LQ +IF++A G
Sbjct: 704 LVFMTGQEDIEATCEIIADRLNQL-HDAPRLSILPIYSQMPADLQAKIFDSAEP-----G 757
Query: 125 IGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGR 184
+ RKVVV+TNIAETSLT+ G+ +V+D G+ K K+YN ++ +++L V+PIS+A+A QRAGR
Sbjct: 758 V-RKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGR 816
Query: 185 AGRTRPGKCFR 195
AGRT PG +R
Sbjct: 817 AGRTGPGIAYR 827
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 45/54 (83%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVV+TNIAETSLT+ G+ +V+D G+ K K+YN ++ +++L V+PIS+A+A QRA
Sbjct: 761 VVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRA 814
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 128/191 (67%), Gaps = 16/191 (8%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVE-GDVLLFLTGQEE 73
+F NAP +PGRT PV+ YT P +DY+EAA+ V+IH+ + GD+L+F+TGQE+
Sbjct: 516 FFGNAPQFTIPGRTFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQED 575
Query: 74 IEEACKRIKKEI-----DNLGP----EAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGG 124
IE ++++ G E +++ +P+YS LP +LQ +IF+ G
Sbjct: 576 IETTFDTLQEKFLQVYSKKFGTANFEEINDIEILPIYSALPADLQFKIFQDL------HG 629
Query: 125 IGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGR 184
RK++++TNIAETSLTI G+ +VID G++K KVYNP+I ++SL+++PISKA+A QR+GR
Sbjct: 630 TKRKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGR 689
Query: 185 AGRTRPGKCFR 195
AGRT PG +R
Sbjct: 690 AGRTAPGTAYR 700
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 48/54 (88%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
++++TNIAETSLTI G+ +VID G++K KVYNP+I ++SL+++PISKA+A QR+
Sbjct: 634 IIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRS 687
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 12/194 (6%)
Query: 5 ATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDV 64
AT L QYF+ AP++ + GR HP++IFYT +P++DYL AA+ +V QIH D+
Sbjct: 223 ATMDVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQPQQDYLHAALVSVFQIHQEAPASQDI 282
Query: 65 LLFLTGQEEIE---EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121
L+FLTGQEEIE + C+ I + + + P + +PLY++LP + Q R+F+ AP
Sbjct: 283 LVFLTGQEEIEAMSKTCRDIARHLPDGCP---SMLVLPLYASLPYSQQLRVFQGAPKGY- 338
Query: 122 NGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 181
RKV++STNIAETS+TI G+ +V+D G K K YNP +E L V +SK A QR
Sbjct: 339 -----RKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 393
Query: 182 AGRAGRTRPGKCFR 195
GRAGR G C+R
Sbjct: 394 TGRAGREDSGICYR 407
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 167 SLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQK 226
S+LV P+ + + R + P K +R V++STNIAETS+TI G+ +V+D G K K
Sbjct: 312 SMLVLPLYASLPYSQQLRVFQGAP-KGYRK-VIISTNIAETSITITGIKYVVDTGMVKAK 369
Query: 227 VYNPRIRVESLLVSPISKASAQQR 250
YNP +E L V +SK A QR
Sbjct: 370 KYNPDSGLEVLAVQRVSKTQAWQR 393
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 120/194 (61%), Gaps = 12/194 (6%)
Query: 5 ATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDV 64
AT L QYF+ AP++ + GR HP+++FYT +P+ DYL AA+ +V QIH D+
Sbjct: 232 ATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDI 291
Query: 65 LLFLTGQEEIE---EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121
L+FLTGQEEIE + C+ I K + + P + +PLY++LP Q R+F+ AP
Sbjct: 292 LVFLTGQEEIEAMSKTCRDIAKHLPDGCP---AMLVLPLYASLPYAQQLRVFQGAPKGY- 347
Query: 122 NGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 181
RKV++STNIAETS+TI G+ +V+D G K K YNP +E L V +SK A QR
Sbjct: 348 -----RKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 402
Query: 182 AGRAGRTRPGKCFR 195
GRAGR G C+R
Sbjct: 403 TGRAGREDSGICYR 416
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
V++STNIAETS+TI G+ +V+D G K K YNP +E L V +SK A QR
Sbjct: 350 VIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 402
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 118/181 (65%), Gaps = 9/181 (4%)
Query: 17 DNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76
D ++ V GRT PV+IFY P DY+++ + TVV+IH E +GDVL FLTGQEE+E
Sbjct: 231 DTCVILTVEGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEG-DGDVLAFLTGQEEVET 289
Query: 77 ACKRIKKEIDNLGPEAGE--LKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+ ++ L + L+ +P+Y+ LP Q ++FE + RKV+V+TN
Sbjct: 290 VVSMLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSV------RKVIVATN 343
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
+AETS+TI G+V+VID GF K + YNPR +E L+V P+S+ASA QRAGR GR+R GKC+
Sbjct: 344 VAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCY 403
Query: 195 R 195
R
Sbjct: 404 R 404
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 44/54 (81%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+V+TN+AETS+TI G+V+VID GF K + YNPR +E L+V P+S+ASA QRA
Sbjct: 338 VIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRA 391
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 118/181 (65%), Gaps = 9/181 (4%)
Query: 17 DNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76
D ++ V GRT PV+IFY P DY+++ + TVV+IH E +GD+L FLTGQEE+E
Sbjct: 231 DTCVILTVGGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEG-DGDILAFLTGQEEVET 289
Query: 77 ACKRIKKEIDNLGPEAGE--LKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134
+ ++ L + L+ +P+Y+ LP Q ++FE + RKV+V+TN
Sbjct: 290 VVSMLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSV------RKVIVATN 343
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194
+AETS+TI G+V+VID GF K + YNPR +E L+V P+S+ASA QRAGR GR+R GKC+
Sbjct: 344 VAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCY 403
Query: 195 R 195
R
Sbjct: 404 R 404
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 44/54 (81%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+V+TN+AETS+TI G+V+VID GF K + YNPR +E L+V P+S+ASA QRA
Sbjct: 338 VIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRA 391
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 7/182 (3%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73
++FD A + + GR +PV+I YT PE DYL+A +RT+ Q+H + GD+L+FLTGQ+E
Sbjct: 258 EFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIFQLHT-KLPPGDILVFLTGQDE 316
Query: 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST 133
IE IK L +++ PL+++LP Q ++F A AN RKVV+ST
Sbjct: 317 IEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANH------RKVVLST 370
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
NIAETS+TI G+ +VID G AK K +N ++ +ESL V PIS+++A QR+GRAGR G+C
Sbjct: 371 NIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQC 430
Query: 194 FR 195
+R
Sbjct: 431 YR 432
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV+STNIAETS+TI G+ +VID G AK K +N ++ +ESL V PIS+++A QR+
Sbjct: 366 VVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRS 419
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 115/179 (64%), Gaps = 8/179 (4%)
Query: 17 DNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76
D A +++V GRTHPV + +T DY ++A+ TV+ IH E GD+L+FLTGQ+E+E+
Sbjct: 253 DTAGIISVEGRTHPVAVHHTKTSVPDYCQSAVDTVINIHK-HENPGDILVFLTGQDEVED 311
Query: 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIA 136
C+++++ NL L +P Y LP Q + F++ P RKVVV+TNIA
Sbjct: 312 VCEKLRELAGNL-KNCDRLWVVPCYGALPAREQMKAFDSTPHGT------RKVVVATNIA 364
Query: 137 ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 195
E S+TI G+ +VID G+ K + + VE+L+ +SKASA+QRAGRAGR RPGKC+R
Sbjct: 365 EASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRIRPGKCYR 423
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VVV+TNIAE S+TI G+ +VID G+ K + + VE+L+ +SKASA+QRA
Sbjct: 357 VVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRA 410
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 9/184 (4%)
Query: 14 QYF--DNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71
Q+F D M++ G+ PVE + +P +Y+++AI TV+ I+ GD+L+FL+G+
Sbjct: 188 QFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYP-PGDILVFLSGR 246
Query: 72 EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVV 131
+EIE K+I+ + + + L +PL++ L + Q R+F G RKV+
Sbjct: 247 KEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIY------DGDFRKVIF 300
Query: 132 STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 191
STNIAETS+TIDG+V+V+D GF KQ++YNP R L+ PISK+SA QR+GRAGRT G
Sbjct: 301 STNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRG 360
Query: 192 KCFR 195
K FR
Sbjct: 361 KVFR 364
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+ STNIAETS+TIDG+V+V+D GF KQ++YNP R L+ PISK+SA QR+
Sbjct: 298 VIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRS 351
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 20/194 (10%)
Query: 15 YFDNAPLMNVPGRTHPV-EIFYTPEPERD-----YLEAAIRTVVQIHMCEEVEGDVLLFL 68
+F N P+ ++PGR +PV E F RD Y++A ++ + IH+ E+ GD+L+FL
Sbjct: 221 FFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHL-NEMAGDILVFL 279
Query: 69 TGQEEIEEACK-------RIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121
TGQ EIE++C+ + + D L +P Y ++ + Q+RIF P
Sbjct: 280 TGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPP--- 336
Query: 122 NGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 181
GI RK V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR
Sbjct: 337 --GI-RKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
Query: 182 AGRAGRTRPGKCFR 195
+GRAGRT GKCFR
Sbjct: 394 SGRAGRTSSGKCFR 407
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR+
Sbjct: 341 CVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 116/193 (60%), Gaps = 9/193 (4%)
Query: 5 ATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDV 64
AT + ++F+NAP++ V GR V+ +Y P D ++A IR +QI+ EE+ GD+
Sbjct: 237 ATLQAEKFSEFFNNAPILFVEGRKFDVKQYYLKAPTDDIVDAVIRCCIQINQGEEL-GDI 295
Query: 65 LLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIP--LYSTLPPNLQQRIFEAAPANKPN 122
L FL GQEEI++A ++K + EA +P LY+ LP Q +F P
Sbjct: 296 LCFLPGQEEIDKAVTIMEKIAKYVSDEAPVPLIVPYPLYAALPAVQQSLVF------API 349
Query: 123 GGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 182
G RKVV STNIAETS+TI GV FV+D G K KV+ ++ + +LL PIS+ASA QR+
Sbjct: 350 KGFKRKVVFSTNIAETSVTISGVKFVVDSGLRKVKVWRHQLGLATLLTVPISQASAMQRS 409
Query: 183 GRAGRTRPGKCFR 195
GRAGR GK FR
Sbjct: 410 GRAGRESEGKSFR 422
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%)
Query: 190 PGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQ 249
P K F+ VV STNIAETS+TI GV FV+D G K KV+ ++ + +LL PIS+ASA Q
Sbjct: 348 PIKGFKRKVVFSTNIAETSVTISGVKFVVDSGLRKVKVWRHQLGLATLLTVPISQASAMQ 407
Query: 250 RA 251
R+
Sbjct: 408 RS 409
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 20/194 (10%)
Query: 15 YFDNAPLMNVPGRTHPV-EIFYTPEPERD-----YLEAAIRTVVQIHMCEEVEGDVLLFL 68
+F N P+ ++PGR +PV E F RD Y++A ++ + IH+ E+ GD+L+FL
Sbjct: 221 FFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHL-NEMAGDILVFL 279
Query: 69 TGQEEIEEACK-------RIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121
TGQ EIE++C+ + + D L +P Y ++ + Q+RIF P
Sbjct: 280 TGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPP--- 336
Query: 122 NGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 181
GI RK V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR
Sbjct: 337 --GI-RKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
Query: 182 AGRAGRTRPGKCFR 195
+GRAGRT GKCFR
Sbjct: 394 SGRAGRTASGKCFR 407
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR+
Sbjct: 341 CVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 20/194 (10%)
Query: 15 YFDNAPLMNVPGRTHPV-EIFYTPEPERD-----YLEAAIRTVVQIHMCEEVEGDVLLFL 68
+F N P+ ++PGR +PV E F RD Y++A ++ + IH+ E+ GD+L+FL
Sbjct: 221 FFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHL-NEMAGDILVFL 279
Query: 69 TGQEEIEEACK-------RIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121
TGQ EIE++C+ + + D L +P Y ++ + Q+RIF P
Sbjct: 280 TGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPP--- 336
Query: 122 NGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 181
GI RK V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR
Sbjct: 337 --GI-RKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
Query: 182 AGRAGRTRPGKCFR 195
+GRAGRT GKCFR
Sbjct: 394 SGRAGRTASGKCFR 407
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR+
Sbjct: 341 CVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 20/194 (10%)
Query: 15 YFDNAPLMNVPGRTHPV-EIFYTPEPERD-----YLEAAIRTVVQIHMCEEVEGDVLLFL 68
+F N P+ ++PGR +PV E F RD Y++A ++ + IH+ E+ GD+L+FL
Sbjct: 221 FFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHL-NEMAGDILVFL 279
Query: 69 TGQEEIEEACK-------RIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121
TGQ EIE++C+ + + D L +P Y ++ + Q+RIF P
Sbjct: 280 TGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPP--- 336
Query: 122 NGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 181
GI RK V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR
Sbjct: 337 --GI-RKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
Query: 182 AGRAGRTRPGKCFR 195
+GRAGRT GKCFR
Sbjct: 394 SGRAGRTASGKCFR 407
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
V+STNI+ TSLTIDG+ +V+D GF KQ +NPR+ ++ L V PISK+ A QR+
Sbjct: 341 CVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 22/188 (11%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTP------EPERDYLEAAIRTVVQIHMCEEVEGDVLLF 67
++F+NAP++ V GRT+PVE+ Y P + ERD L+A V + + +E GD+L+F
Sbjct: 239 RHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDE--LSQESHGDILIF 296
Query: 68 LTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGR 127
++G+ EI + + K L E+ +PLY+ L + Q R+F++ GR
Sbjct: 297 MSGEREIRDTADALNK----LNLRHTEI--LPLYARLSNSEQNRVFQSHS--------GR 342
Query: 128 KVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 187
++V++TN+AETSLT+ G+ +VIDPG A+ Y+ R +V+ L + PIS+ASA QR GR GR
Sbjct: 343 RIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 402
Query: 188 TRPGKCFR 195
G C R
Sbjct: 403 VSEGICIR 410
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
+V++TN+AETSLT+ G+ +VIDPG A+ Y+ R +V+ L + PIS+ASA QR
Sbjct: 344 IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 396
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 109/200 (54%), Gaps = 26/200 (13%)
Query: 5 ATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERD---------YLEAAIRTVVQIH 55
AT + QY + +++V GR PVEI Y+P + Y ++ V+IH
Sbjct: 457 ATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIH 516
Query: 56 MCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEA 115
E+ EG +L FLT Q E+E AC+R + P A L PL+ L Q +F+
Sbjct: 517 KTEK-EGTILAFLTSQAEVEWACERF------VAPSAIAL---PLHGKLSFEEQFMVFQN 566
Query: 116 APANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISK 175
P RKV+ +TNIAETSLTI GV +VID G K+ Y PR + L V +S+
Sbjct: 567 YPGR-------RKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQ 619
Query: 176 ASAQQRAGRAGRTRPGKCFR 195
+SA+QRAGRAGRT PG+C+R
Sbjct: 620 SSARQRAGRAGRTEPGRCYR 639
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 195 RYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
R V+ +TNIAETSLTI GV +VID G K+ Y PR + L V +S++SA+QRA
Sbjct: 570 RRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRA 626
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 19/185 (10%)
Query: 14 QYFDNAPLMNVPGRTHPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTG 70
++F+NAP++ V GRT+PVE+ Y P E ++D L+ + V ++ E GD+L+F+ G
Sbjct: 246 KHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQA--EGRGDILIFMNG 303
Query: 71 QEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVV 130
+ EI + + ++K+ NL + +PL++ L Q +IF + N+ +V
Sbjct: 304 EREIRDTAEALQKQ--NLK----HTEILPLFARLSAQEQNKIFHPSGLNR--------IV 349
Query: 131 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190
++TN+AETSLT+ + +VIDPG A+ Y+ R +V+ L + PIS+ASA QR GR GR
Sbjct: 350 LATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSE 409
Query: 191 GKCFR 195
G C R
Sbjct: 410 GICIR 414
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
+V++TN+AETSLT+ + +VIDPG A+ Y+ R +V+ L + PIS+ASA QR
Sbjct: 348 IVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 400
>sp|Q5XH12|DHX32_XENLA Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Xenopus laevis GN=dhx32 PE=2 SV=1
Length = 748
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 11/183 (6%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
Y+ NAPL+ TH VE YT RDY +A+R + +IH +E +GD+++FL +EEI
Sbjct: 230 YYGNAPLVEAEN-THSVESVYTTSLPRDYFHSALRLLFEIHHTKE-KGDIVVFLACEEEI 287
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIG---RKVVV 131
+ A + IK+E ++ PE GEL I LY Q I + P + + RKVV+
Sbjct: 288 KRAYEHIKQEALHMNPELGELMPIALYP------HQSISDYIPYEELDDNSKNPKRKVVL 341
Query: 132 STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 191
+T++ E+ + + + FVID G K+KVYN RIR ESL+ PISK A+ R + G
Sbjct: 342 TTSLGESLIWMKNIFFVIDVGIEKRKVYNTRIRAESLVTQPISKVRAKMRKHILSSSSEG 401
Query: 192 KCF 194
K F
Sbjct: 402 KLF 404
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
VV++T++ E+ + + + FVID G K+KVYN RIR ESL+ PISK A+ R
Sbjct: 339 VVLTTSLGESLIWMKNIFFVIDVGIEKRKVYNTRIRAESLVTQPISKVRAKMR 391
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 11 LTRQYFDNAPLMNVPGRTHPVEIFYTP---EPERDYLEAA-----IRTVVQIHMC--EEV 60
L YF NAP++ VPGR P+ + Y P EP E +R + I E
Sbjct: 318 LFSSYFSNAPVVQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEE 377
Query: 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANK 120
GD+L+FL+G EI + + +PL+S L Q ++F+ AP
Sbjct: 378 RGDLLVFLSGMAEISA----VLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPP-- 431
Query: 121 PNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQ 180
G+ RK ++STNIAETS+TIDG+ FV+D G K+ Y+P+ +++ L IS+ASA+Q
Sbjct: 432 ---GV-RKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQ 487
Query: 181 RAGRAGRTRPGKCFR 195
R GRAGRT PG CFR
Sbjct: 488 RKGRAGRTGPGVCFR 502
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 199 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
++STNIAETS+TIDG+ FV+D G K+ Y+P+ +++ L IS+ASA+QR
Sbjct: 437 ILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 488
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAPB1A10.06c PE=3 SV=1
Length = 1183
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 51/220 (23%)
Query: 20 PLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACK 79
P++ + R +PV I + + DYL+ A V IH G +L+FLTGQ+E+E+ C+
Sbjct: 584 PIIKIDARQYPVSIHFNRTTKPDYLQDAFDKVCLIHKRLPA-GSILVFLTGQQEVEQLCQ 642
Query: 80 RIKK----------------------------------EIDNL----------GPEAGEL 95
++K +ID + E+ +
Sbjct: 643 MLRKRFVRSFRPLKSRARIVVSRKTMSVENEDLQSETEDIDQVPTSSSSSVTYDDESEPM 702
Query: 96 KCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155
+PLYS L Q ++F+++P R +V+TN+AETS+TI + +V+D G AK
Sbjct: 703 YVLPLYSLLTTEDQMKVFDSSPEGH------RMCIVATNVAETSITIPNIRYVVDCGKAK 756
Query: 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 195
++VYN + V+ V ISKA+A QRAGRAGRT PG C+R
Sbjct: 757 ERVYNEKTSVQKFEVRWISKANADQRAGRAGRTGPGHCYR 796
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 197 IVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
+ +V+TN+AETS+TI + +V+D G AK++VYN + V+ V ISKA+A QRA
Sbjct: 729 MCIVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKANADQRA 783
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 11 LTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAA-----------IRTVVQIHMCEE 59
L YF +AP++ VPGR P+ + Y P+ E D + + + E
Sbjct: 320 LFSSYFSHAPVVQVPGRLFPITVVYQPQ-EADQTASKSEKLDPRPFLRVLEAIDNKYPPE 378
Query: 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPAN 119
GD+L+FL+G EI + +PL+S L + Q ++F+ APA
Sbjct: 379 ERGDLLVFLSGMAEITT----VLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPA- 433
Query: 120 KPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQ 179
G+ RK ++STNIAETS+TIDG+ FV+D G K+ Y+P+ +++ L IS+ASA+
Sbjct: 434 ----GV-RKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAE 488
Query: 180 QRAGRAGRTRPGKCFR 195
QR GRAGRT PG C+R
Sbjct: 489 QRKGRAGRTGPGVCYR 504
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 199 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
++STNIAETS+TIDG+ FV+D G K+ Y+P+ +++ L IS+ASA+QR
Sbjct: 439 ILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 490
>sp|Q7L7V1|DHX32_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Homo sapiens GN=DHX32 PE=1 SV=1
Length = 743
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
Y+ N P++ V + HPVE+ Y E ++D E+ +R + +IH E +GD+++FL +++I
Sbjct: 228 YYGNVPVIEVKNK-HPVEVVYLSEAQKDSFESILRLIFEIHHSGE-KGDIVVFLACEQDI 285
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGI-GRKVVVST 133
E+ C+ + + NL P+ GEL +PLY P + +F+ + + R+VV++T
Sbjct: 286 EKVCETVYQG-SNLNPDLGELVVVPLY----PKEKCSLFKPLDETEKRCQVYQRRVVLTT 340
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
+ E + + V FVID G ++KVYNPRIR SL++ PIS++ A+ R G + GK
Sbjct: 341 SSGEFLIWSNSVRFVIDVGVERRKVYNPRIRANSLVMQPISQSQAEIRKQILGSSSSGKF 400
Query: 194 F 194
F
Sbjct: 401 F 401
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
VV++T+ E + + V FVID G ++KVYNPRIR SL++ PIS++ A+ R
Sbjct: 336 VVLTTSSGEFLIWSNSVRFVIDVGVERRKVYNPRIRANSLVMQPISQSQAEIR 388
>sp|Q8BZS9|DHX32_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Mus musculus GN=Dhx32 PE=2 SV=2
Length = 744
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 105/181 (58%), Gaps = 7/181 (3%)
Query: 15 YFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74
Y+ + P++ V + HPVE+ Y ++D E+ IR + +IH E +GDV++FL +++I
Sbjct: 228 YYGDVPVIEVRNK-HPVEVVYLSGAQKDSFESVIRLIFEIHRSGE-KGDVVVFLACEQDI 285
Query: 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGI-GRKVVVST 133
E+ + + +E NL P+ G+L IPLY P + +F + + R+VV++T
Sbjct: 286 EKTYELVCQEGSNLNPDVGDLVVIPLY----PKEKCSLFRPVDETEKRCQVYQRRVVLTT 341
Query: 134 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193
+ E+ + V FVID G +++VYNPRIR SL++ PIS++ A+ R G + GK
Sbjct: 342 SCGESLIWSHTVKFVIDVGLERRQVYNPRIRANSLVLQPISQSQAEIRKQLLGSSPSGKL 401
Query: 194 F 194
F
Sbjct: 402 F 402
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
VV++T+ E+ + V FVID G +++VYNPRIR SL++ PIS++ A+ R
Sbjct: 337 VVLTTSCGESLIWSHTVKFVIDVGLERRQVYNPRIRANSLVLQPISQSQAEIR 389
>sp|Q5UQ96|YL540_MIMIV Putative ATP-dependent RNA helicase L540 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L540 PE=1 SV=1
Length = 695
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 23/232 (9%)
Query: 13 RQYFD--NAPLMNVPGR-THPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLT 69
++YF+ ++ ++++ G+ HP+E + +P Y++ + + + + ++++ D+L F+T
Sbjct: 207 QKYFNSVDSTVIDIAGQPNHPIETHFMDKPVTSYMKEGLELIEDL-IHQQIKKDMLFFIT 265
Query: 70 GQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKV 129
E + C+ I+ P+ + C+ +YS + NL+Q E+ G +K+
Sbjct: 266 TSNEALQLCRSIR-------PQYPRVYCVEVYSDMDKNLKQYA-ESRDKYLELGNYDQKL 317
Query: 130 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189
V++TN+AE+SLTIDG+V+VID G+ ++P + L +SKA A QR GR GRT
Sbjct: 318 VMATNVAESSLTIDGLVYVIDSGYELSSRFDPECYGQILEKKFVSKAQALQRRGRVGRTE 377
Query: 190 PGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSP 241
PG C+ + T DG+ P +Q + I++ + VSP
Sbjct: 378 PGVCYHLL---------TKQQFDGLADYPTPDILRQDITMDLIKI--IQVSP 418
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250
+V++TN+AE+SLTIDG+V+VID G+ ++P + L +SKA A QR
Sbjct: 317 LVMATNVAESSLTIDGLVYVIDSGYELSSRFDPECYGQILEKKFVSKAQALQR 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,902,351
Number of Sequences: 539616
Number of extensions: 3715642
Number of successful extensions: 9708
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 9229
Number of HSP's gapped (non-prelim): 336
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)