Query psy2956
Match_columns 251
No_of_seqs 261 out of 1926
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:53:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923|consensus 100.0 3.2E-57 6.9E-62 414.8 15.4 221 1-228 414-651 (902)
2 KOG0922|consensus 100.0 1.7E-56 3.6E-61 412.4 17.7 192 1-200 199-390 (674)
3 KOG0925|consensus 100.0 7.1E-54 1.5E-58 382.1 16.5 193 1-200 195-387 (699)
4 KOG0924|consensus 100.0 9.1E-52 2E-56 379.8 13.1 203 1-210 504-722 (1042)
5 COG1643 HrpA HrpA-like helicas 100.0 6.6E-50 1.4E-54 385.6 16.7 187 1-199 199-386 (845)
6 KOG0926|consensus 100.0 2E-42 4.2E-47 322.6 14.0 191 1-198 418-702 (1172)
7 KOG0920|consensus 100.0 7.4E-43 1.6E-47 336.2 10.9 193 1-202 323-546 (924)
8 KOG0922|consensus 100.0 1.4E-40 3.1E-45 307.1 7.2 182 62-251 140-372 (674)
9 KOG0923|consensus 100.0 2.7E-40 5.9E-45 303.7 8.7 184 61-251 354-588 (902)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.2E-37 4.8E-42 301.7 16.7 186 1-199 150-335 (819)
11 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.8E-37 3.9E-42 309.8 15.0 183 1-199 215-403 (1283)
12 PRK11664 ATP-dependent RNA hel 100.0 1.4E-36 3.1E-41 296.4 16.8 186 1-199 153-338 (812)
13 KOG0925|consensus 100.0 2.2E-37 4.8E-42 276.6 8.4 176 74-251 165-369 (699)
14 PRK11131 ATP-dependent RNA hel 100.0 3.5E-36 7.5E-41 299.9 16.7 183 1-199 222-410 (1294)
15 KOG0924|consensus 100.0 1.3E-36 2.8E-41 280.2 7.5 172 74-251 474-679 (1042)
16 COG1643 HrpA HrpA-like helicas 100.0 1.3E-36 2.7E-41 293.7 7.5 171 74-251 168-369 (845)
17 KOG0920|consensus 100.0 8E-33 1.7E-37 267.0 3.5 171 74-251 293-526 (924)
18 PHA02653 RNA helicase NPH-II; 100.0 2.8E-29 6.2E-34 240.2 16.0 177 1-199 325-513 (675)
19 KOG0926|consensus 99.9 7.1E-26 1.5E-30 212.3 7.3 81 167-251 604-686 (1172)
20 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.4E-26 1.8E-30 226.5 4.2 168 74-251 185-386 (1283)
21 TIGR01970 DEAH_box_HrpB ATP-de 99.9 8.8E-25 1.9E-29 213.6 5.0 152 92-251 144-318 (819)
22 PRK11131 ATP-dependent RNA hel 99.9 7.3E-25 1.6E-29 219.3 4.0 168 74-251 192-393 (1294)
23 KOG0921|consensus 99.9 3.7E-24 8E-29 202.6 6.8 204 1-212 529-800 (1282)
24 PRK11664 ATP-dependent RNA hel 99.9 6E-24 1.3E-28 208.0 4.5 152 92-251 147-321 (812)
25 PHA02653 RNA helicase NPH-II; 99.7 3.5E-17 7.5E-22 157.3 4.2 145 96-251 323-496 (675)
26 KOG0921|consensus 99.6 1.2E-15 2.6E-20 145.4 3.1 166 81-251 512-756 (1282)
27 PRK11776 ATP-dependent RNA hel 99.4 2.6E-12 5.7E-17 119.7 12.2 158 1-196 182-345 (460)
28 PRK01172 ski2-like helicase; P 99.3 1E-11 2.2E-16 120.9 11.1 168 1-189 173-364 (674)
29 PRK04837 ATP-dependent RNA hel 99.3 5E-11 1.1E-15 110.0 12.1 155 1-193 194-355 (423)
30 PRK11634 ATP-dependent RNA hel 99.2 4.9E-11 1.1E-15 114.9 11.8 155 1-193 184-345 (629)
31 COG0513 SrmB Superfamily II DN 99.2 5.7E-11 1.2E-15 112.1 11.3 155 1-193 209-373 (513)
32 PTZ00110 helicase; Provisional 99.2 1.4E-10 3E-15 110.3 11.0 104 61-197 377-481 (545)
33 PRK04537 ATP-dependent RNA hel 99.2 1.9E-10 4.1E-15 109.9 11.8 156 1-194 196-358 (572)
34 PRK10590 ATP-dependent RNA hel 99.2 2.6E-10 5.5E-15 106.3 11.2 156 1-194 184-346 (456)
35 PRK11192 ATP-dependent RNA hel 99.2 3.3E-10 7.2E-15 104.8 11.9 155 1-193 182-345 (434)
36 PRK01297 ATP-dependent RNA hel 99.1 4.1E-10 8.9E-15 105.4 12.4 155 1-193 274-435 (475)
37 PTZ00424 helicase 45; Provisio 99.1 5.5E-10 1.2E-14 102.0 11.8 158 1-195 205-369 (401)
38 KOG0331|consensus 99.1 6.6E-10 1.4E-14 103.1 11.7 160 1-195 275-443 (519)
39 KOG0345|consensus 99.1 2.8E-10 6.1E-15 102.9 8.5 155 2-192 193-356 (567)
40 PLN00206 DEAD-box ATP-dependen 99.1 7E-10 1.5E-14 105.0 11.6 159 1-194 304-469 (518)
41 TIGR00614 recQ_fam ATP-depende 99.1 1E-09 2.2E-14 102.6 11.7 158 1-196 166-329 (470)
42 PRK11057 ATP-dependent DNA hel 99.1 1.1E-09 2.4E-14 105.4 11.6 156 1-195 178-338 (607)
43 TIGR00580 mfd transcription-re 99.0 3.8E-09 8.3E-14 105.4 12.0 158 1-195 603-765 (926)
44 PRK10689 transcription-repair 99.0 5.3E-09 1.2E-13 106.5 11.9 157 1-194 752-913 (1147)
45 TIGR02621 cas3_GSU0051 CRISPR- 98.9 7.6E-09 1.6E-13 101.4 12.3 156 1-190 209-379 (844)
46 TIGR01587 cas3_core CRISPR-ass 98.9 6.4E-09 1.4E-13 93.7 11.1 96 61-190 222-321 (358)
47 PRK02362 ski2-like helicase; P 98.9 1.3E-08 2.9E-13 100.2 12.5 115 61-190 243-384 (737)
48 TIGR03817 DECH_helic helicase/ 98.9 2.2E-08 4.7E-13 98.4 13.6 105 61-190 271-375 (742)
49 TIGR03158 cas3_cyano CRISPR-as 98.9 3.7E-08 7.9E-13 89.1 13.8 130 1-150 185-342 (357)
50 PRK10917 ATP-dependent DNA hel 98.9 2.1E-08 4.6E-13 97.8 12.6 160 1-196 413-585 (681)
51 KOG0333|consensus 98.9 1.2E-08 2.6E-13 93.7 9.8 150 1-190 456-613 (673)
52 PRK00254 ski2-like helicase; P 98.9 2.7E-08 5.8E-13 97.8 12.8 169 1-189 173-374 (720)
53 TIGR01389 recQ ATP-dependent D 98.9 1.6E-08 3.4E-13 97.3 10.6 102 61-195 224-326 (591)
54 KOG0328|consensus 98.8 2.2E-08 4.9E-13 85.7 10.2 130 1-150 204-340 (400)
55 PLN03137 ATP-dependent DNA hel 98.8 1.6E-08 3.6E-13 101.1 10.7 104 61-197 680-784 (1195)
56 KOG0330|consensus 98.8 9.1E-09 2E-13 91.4 7.8 154 1-192 239-399 (476)
57 TIGR00643 recG ATP-dependent D 98.8 4.4E-08 9.4E-13 94.9 11.1 160 1-196 390-562 (630)
58 PRK13767 ATP-dependent helicas 98.7 7E-08 1.5E-12 96.6 11.6 101 61-188 284-384 (876)
59 KOG0342|consensus 98.7 6.9E-08 1.5E-12 88.0 8.3 156 1-193 265-430 (543)
60 PRK09751 putative ATP-dependen 98.7 3.8E-07 8.3E-12 94.4 14.0 108 61-192 244-375 (1490)
61 cd00079 HELICc Helicase superf 98.6 2.4E-07 5.1E-12 70.6 9.0 126 31-193 2-128 (131)
62 PRK12898 secA preprotein trans 98.6 3.9E-07 8.6E-12 87.5 12.2 152 3-193 414-579 (656)
63 KOG0332|consensus 98.6 3.1E-07 6.8E-12 81.4 10.3 158 1-190 268-432 (477)
64 KOG0335|consensus 98.6 1.7E-07 3.8E-12 86.0 7.9 157 1-191 266-434 (482)
65 KOG0340|consensus 98.5 2.6E-07 5.7E-12 81.4 7.2 77 60-151 253-329 (442)
66 PRK09694 helicase Cas3; Provis 98.5 1.3E-06 2.9E-11 86.8 12.3 99 61-189 560-663 (878)
67 PRK09200 preprotein translocas 98.5 2.2E-06 4.7E-11 84.2 13.2 151 3-193 369-534 (790)
68 TIGR03714 secA2 accessory Sec 98.5 3.3E-06 7.2E-11 82.4 14.1 144 10-193 374-530 (762)
69 KOG0338|consensus 98.3 9E-07 2E-11 81.4 5.7 76 61-151 426-501 (691)
70 KOG0343|consensus 98.3 3.2E-06 6.9E-11 78.5 8.7 158 1-194 250-416 (758)
71 TIGR00963 secA preprotein tran 98.3 1.4E-05 3E-10 77.8 13.4 149 3-193 346-510 (745)
72 PRK12906 secA preprotein trans 98.3 1.3E-05 2.9E-10 78.5 13.1 151 3-193 381-546 (796)
73 TIGR00631 uvrb excinuclease AB 98.2 7.2E-06 1.6E-10 79.6 9.7 105 61-193 442-546 (655)
74 KOG0341|consensus 98.2 5E-06 1.1E-10 74.3 7.0 114 43-189 403-516 (610)
75 KOG0339|consensus 98.1 7.2E-06 1.5E-10 75.6 7.8 156 1-195 405-570 (731)
76 KOG0326|consensus 98.1 5.5E-06 1.2E-10 72.4 6.4 154 1-192 262-421 (459)
77 KOG4284|consensus 98.1 8.7E-06 1.9E-10 77.0 7.3 157 2-192 204-371 (980)
78 PF00271 Helicase_C: Helicase 98.1 3.6E-06 7.8E-11 58.8 3.7 72 93-188 6-77 (78)
79 PRK05298 excinuclease ABC subu 98.1 1.5E-05 3.1E-10 77.7 9.1 106 61-194 446-551 (652)
80 KOG0348|consensus 98.1 1.6E-05 3.4E-10 73.8 8.1 122 43-189 408-542 (708)
81 KOG0327|consensus 98.0 2.8E-05 6E-10 69.4 9.1 149 1-189 204-358 (397)
82 KOG0336|consensus 98.0 2.2E-05 4.7E-10 70.8 8.0 150 2-189 403-560 (629)
83 PRK13766 Hef nuclease; Provisi 98.0 3.3E-05 7.2E-10 76.6 10.3 106 60-198 364-477 (773)
84 COG1201 Lhr Lhr-like helicases 98.0 6.3E-05 1.4E-09 74.0 11.6 154 2-190 188-350 (814)
85 smart00490 HELICc helicase sup 98.0 1.4E-05 2.9E-10 55.5 5.0 71 94-188 11-81 (82)
86 KOG0334|consensus 98.0 3.9E-05 8.5E-10 75.9 9.6 155 1-193 550-713 (997)
87 COG1197 Mfd Transcription-repa 98.0 3E-05 6.4E-10 77.9 8.6 141 20-198 768-911 (1139)
88 PHA02558 uvsW UvsW helicase; P 97.9 2.6E-05 5.6E-10 73.7 7.9 99 61-192 344-443 (501)
89 COG1202 Superfamily II helicas 97.9 2.4E-05 5.2E-10 73.2 6.3 159 1-189 376-539 (830)
90 PRK13104 secA preprotein trans 97.9 0.00023 4.9E-09 70.6 12.8 112 10-142 394-508 (896)
91 KOG0350|consensus 97.8 6.7E-05 1.5E-09 69.1 8.0 105 62-195 430-535 (620)
92 TIGR01054 rgy reverse gyrase. 97.8 0.00017 3.7E-09 74.3 11.1 128 2-156 271-410 (1171)
93 KOG0347|consensus 97.8 2.3E-05 4.9E-10 73.0 4.3 76 60-150 462-537 (731)
94 PRK12900 secA preprotein trans 97.7 0.00044 9.6E-09 69.0 11.8 135 18-193 555-704 (1025)
95 PRK12904 preprotein translocas 97.7 0.00064 1.4E-08 67.2 12.6 119 3-143 371-495 (830)
96 PRK13107 preprotein translocas 97.7 0.00086 1.9E-08 66.5 13.4 105 18-142 406-513 (908)
97 COG1111 MPH1 ERCC4-like helica 97.6 0.00033 7.2E-09 64.8 9.4 104 61-193 366-474 (542)
98 COG0514 RecQ Superfamily II DN 97.5 0.00069 1.5E-08 64.6 10.6 102 60-194 229-331 (590)
99 PRK09401 reverse gyrase; Revie 97.5 0.00035 7.6E-09 72.0 9.1 129 1-157 272-412 (1176)
100 KOG0344|consensus 97.5 0.00044 9.5E-09 64.8 8.9 106 62-199 388-494 (593)
101 TIGR00595 priA primosomal prot 97.4 0.00085 1.8E-08 63.5 9.5 51 93-149 283-335 (505)
102 TIGR00603 rad25 DNA repair hel 97.4 0.00056 1.2E-08 67.0 7.9 111 61-207 496-611 (732)
103 PRK14701 reverse gyrase; Provi 97.4 0.00085 1.8E-08 71.1 9.4 130 1-157 273-414 (1638)
104 COG1203 CRISPR-associated heli 97.3 0.0015 3.2E-08 64.7 10.2 90 61-189 440-536 (733)
105 KOG0346|consensus 97.3 0.0015 3.2E-08 59.7 8.9 116 1-135 205-327 (569)
106 COG4098 comFA Superfamily II D 97.3 0.0067 1.4E-07 54.0 12.4 152 1-188 237-401 (441)
107 KOG0354|consensus 97.2 0.0023 5E-08 62.2 9.8 126 42-195 395-524 (746)
108 PRK04914 ATP-dependent helicas 97.1 0.0024 5.1E-08 64.6 9.2 100 61-190 493-592 (956)
109 KOG0951|consensus 97.1 0.0066 1.4E-07 61.8 11.8 183 2-207 479-704 (1674)
110 COG1200 RecG RecG-like helicas 97.0 0.003 6.4E-08 60.7 8.0 157 1-194 415-585 (677)
111 PRK05580 primosome assembly pr 96.9 0.01 2.2E-07 58.3 11.5 51 93-149 451-503 (679)
112 COG1204 Superfamily II helicas 96.8 0.019 4E-07 57.1 12.5 167 2-189 185-394 (766)
113 KOG0337|consensus 96.8 0.0043 9.4E-08 56.4 7.3 131 1-150 199-335 (529)
114 PRK12326 preprotein translocas 96.8 0.024 5.2E-07 55.4 12.8 165 3-198 368-544 (764)
115 COG1205 Distinct helicase fami 96.7 0.0048 1E-07 61.9 7.2 103 63-189 308-410 (851)
116 PRK12903 secA preprotein trans 96.5 0.051 1.1E-06 54.1 12.7 146 12-198 378-536 (925)
117 PRK01172 ski2-like helicase; P 96.4 0.0021 4.5E-08 63.0 3.0 46 196-251 312-357 (674)
118 KOG0349|consensus 96.3 0.012 2.6E-07 53.9 6.8 80 62-153 506-585 (725)
119 KOG0953|consensus 96.2 0.032 6.9E-07 52.6 9.1 104 61-190 357-463 (700)
120 TIGR01407 dinG_rel DnaQ family 95.9 0.14 3.1E-06 51.6 12.9 137 1-153 599-754 (850)
121 PRK11057 ATP-dependent DNA hel 95.7 0.0071 1.5E-07 58.7 2.6 27 196-222 287-313 (607)
122 PRK11448 hsdR type I restricti 95.6 0.091 2E-06 54.4 10.4 106 61-193 698-807 (1123)
123 PRK12899 secA preprotein trans 95.6 0.2 4.4E-06 50.4 12.3 145 11-198 519-678 (970)
124 COG1199 DinG Rad3-related DNA 95.0 0.16 3.4E-06 49.7 9.6 171 1-190 407-606 (654)
125 KOG4150|consensus 94.8 0.27 5.9E-06 46.8 10.1 173 10-220 466-665 (1034)
126 KOG0347|consensus 94.8 0.1 2.3E-06 49.3 7.2 52 63-119 265-316 (731)
127 PRK13103 secA preprotein trans 94.7 0.32 7E-06 48.9 10.9 109 10-142 399-513 (913)
128 PRK01297 ATP-dependent RNA hel 94.7 0.072 1.6E-06 50.0 6.1 28 196-223 386-413 (475)
129 PRK04837 ATP-dependent RNA hel 94.0 0.078 1.7E-06 48.9 4.6 27 197-223 307-333 (423)
130 PRK12901 secA preprotein trans 93.9 0.61 1.3E-05 47.6 10.8 139 18-198 585-738 (1112)
131 PRK11747 dinG ATP-dependent DN 93.9 0.98 2.1E-05 44.7 12.3 134 1-153 460-614 (697)
132 PRK04537 ATP-dependent RNA hel 93.8 0.085 1.8E-06 50.9 4.7 28 196-223 308-335 (572)
133 CHL00122 secA preprotein trans 93.7 1.1 2.3E-05 45.0 12.1 109 10-142 374-490 (870)
134 PTZ00110 helicase; Provisional 93.6 0.083 1.8E-06 50.6 4.2 29 197-225 429-457 (545)
135 PRK08074 bifunctional ATP-depe 91.8 2.4 5.2E-05 43.4 12.1 97 41-153 734-833 (928)
136 PRK11634 ATP-dependent RNA hel 91.8 0.19 4.2E-06 49.0 4.0 27 196-222 296-322 (629)
137 KOG0329|consensus 91.7 0.13 2.8E-06 44.3 2.4 43 130-190 302-344 (387)
138 KOG0331|consensus 91.5 1.5 3.3E-05 41.6 9.5 47 63-114 167-213 (519)
139 TIGR00614 recQ_fam ATP-depende 91.2 0.27 5.9E-06 46.1 4.4 29 197-225 278-306 (470)
140 KOG0352|consensus 91.2 0.37 8E-06 44.4 4.9 101 60-197 254-358 (641)
141 KOG0351|consensus 90.8 0.6 1.3E-05 47.4 6.5 97 60-189 484-580 (941)
142 COG1061 SSL2 DNA or RNA helica 90.7 1.4 3.1E-05 41.1 8.6 99 61-193 283-381 (442)
143 TIGR00604 rad3 DNA repair heli 90.6 1.2 2.7E-05 44.0 8.5 81 1-83 445-544 (705)
144 COG0556 UvrB Helicase subunit 89.2 6.1 0.00013 37.7 11.1 104 62-193 447-550 (663)
145 PRK11776 ATP-dependent RNA hel 89.1 0.11 2.4E-06 48.5 -0.1 83 144-231 243-329 (460)
146 smart00490 HELICc helicase sup 88.4 0.32 6.9E-06 33.0 1.8 26 197-222 39-64 (82)
147 PRK07246 bifunctional ATP-depe 87.3 8 0.00017 39.1 11.6 82 41-143 630-711 (820)
148 PLN03137 ATP-dependent DNA hel 85.3 0.79 1.7E-05 47.4 3.4 30 196-225 731-760 (1195)
149 PRK11192 ATP-dependent RNA hel 85.1 0.35 7.5E-06 44.8 0.7 53 168-223 270-323 (434)
150 PLN03142 Probable chromatin-re 84.2 6.6 0.00014 40.6 9.4 78 61-150 487-564 (1033)
151 KOG0952|consensus 83.9 20 0.00044 37.0 12.2 169 1-189 279-477 (1230)
152 TIGR01389 recQ ATP-dependent D 83.7 2.1 4.4E-05 41.5 5.4 28 197-224 276-303 (591)
153 PF00271 Helicase_C: Helicase 83.1 1 2.2E-05 30.7 2.3 26 197-222 35-60 (78)
154 PTZ00424 helicase 45; Provisio 82.0 0.46 1E-05 43.2 0.2 28 196-223 318-345 (401)
155 TIGR00580 mfd transcription-re 80.8 0.54 1.2E-05 47.9 0.2 49 167-218 686-735 (926)
156 TIGR03117 cas_csf4 CRISPR-asso 80.1 32 0.00068 33.9 11.9 83 43-142 454-538 (636)
157 KOG0330|consensus 79.8 5.1 0.00011 36.7 5.9 55 167-224 324-379 (476)
158 PRK10689 transcription-repair 78.3 0.52 1.1E-05 49.1 -0.8 22 197-218 863-884 (1147)
159 PRK02362 ski2-like helicase; P 78.1 1.9 4.2E-05 42.9 3.2 47 196-251 330-376 (737)
160 TIGR01587 cas3_core CRISPR-ass 75.3 8.2 0.00018 34.5 6.2 72 143-218 222-300 (358)
161 KOG0387|consensus 75.3 34 0.00075 34.3 10.5 108 62-198 547-656 (923)
162 PF13307 Helicase_C_2: Helicas 73.8 7.3 0.00016 31.1 4.9 79 60-153 8-90 (167)
163 KOG0390|consensus 71.3 22 0.00048 35.6 8.4 45 94-144 619-666 (776)
164 KOG0392|consensus 71.3 22 0.00047 37.4 8.4 107 63-198 1342-1452(1549)
165 PRK10590 ATP-dependent RNA hel 68.3 1.5 3.2E-05 41.0 -0.3 30 196-225 296-325 (456)
166 KOG0948|consensus 68.3 18 0.00038 36.2 6.8 54 126-189 472-525 (1041)
167 PLN00206 DEAD-box ATP-dependen 64.2 3.4 7.4E-05 39.3 1.3 27 197-223 420-446 (518)
168 KOG0950|consensus 64.2 25 0.00055 35.8 7.2 19 63-81 462-480 (1008)
169 KOG1123|consensus 63.6 16 0.00034 34.9 5.3 149 47-235 531-684 (776)
170 COG1198 PriA Primosomal protei 61.6 22 0.00049 35.4 6.3 71 64-150 486-558 (730)
171 KOG0335|consensus 60.5 4 8.8E-05 38.3 1.0 24 197-220 389-412 (482)
172 PRK12902 secA preprotein trans 59.5 1.2E+02 0.0026 31.2 10.9 111 12-142 391-505 (939)
173 KOG0353|consensus 58.9 30 0.00066 31.8 6.2 99 38-155 298-396 (695)
174 PRK13767 ATP-dependent helicas 58.0 6.2 0.00013 40.2 1.9 26 196-221 341-366 (876)
175 COG0653 SecA Preprotein transl 55.3 52 0.0011 33.3 7.6 38 43-83 414-451 (822)
176 PRK14873 primosome assembly pr 54.9 29 0.00063 34.3 5.9 61 61-134 188-248 (665)
177 KOG0326|consensus 54.2 6.9 0.00015 35.0 1.3 59 172-233 351-411 (459)
178 KOG0333|consensus 54.0 12 0.00025 35.8 2.8 61 168-233 542-606 (673)
179 TIGR03817 DECH_helic helicase/ 52.9 7 0.00015 39.0 1.3 27 196-222 330-356 (742)
180 KOG0338|consensus 52.4 14 0.00031 35.1 3.2 58 164-224 447-505 (691)
181 PRK09751 putative ATP-dependen 50.7 8.8 0.00019 41.3 1.7 26 196-221 328-353 (1490)
182 KOG0384|consensus 50.3 66 0.0014 34.0 7.6 107 63-198 701-809 (1373)
183 KOG1015|consensus 49.1 90 0.002 32.4 8.1 77 98-196 1192-1273(1567)
184 KOG0391|consensus 48.4 1.7E+02 0.0037 31.3 10.0 110 61-198 1276-1385(1958)
185 KOG0947|consensus 44.4 25 0.00054 36.1 3.6 54 126-189 656-709 (1248)
186 PRK05580 primosome assembly pr 43.1 55 0.0012 32.4 5.8 48 61-116 190-237 (679)
187 TIGR02562 cas3_yersinia CRISPR 42.2 88 0.0019 32.7 7.1 26 126-151 838-863 (1110)
188 PRK09401 reverse gyrase; Revie 42.0 42 0.00092 35.5 5.0 50 168-224 356-410 (1176)
189 TIGR00643 recG ATP-dependent D 41.5 13 0.00029 36.3 1.3 24 196-219 509-532 (630)
190 KOG0340|consensus 41.5 11 0.00025 34.1 0.7 54 168-224 279-333 (442)
191 PRK00254 ski2-like helicase; P 40.6 25 0.00054 35.0 3.0 25 196-220 322-346 (720)
192 TIGR00595 priA primosomal prot 38.5 73 0.0016 30.4 5.7 48 61-116 25-72 (505)
193 PF02375 JmjN: jmjN domain; I 35.8 39 0.00084 19.6 2.1 33 66-99 2-34 (34)
194 COG1255 Uncharacterized protei 34.2 21 0.00045 27.1 1.0 30 198-234 38-67 (129)
195 COG4096 HsdR Type I site-speci 33.8 1.5E+02 0.0032 30.2 7.0 100 61-190 426-527 (875)
196 PF14202 TnpW: Transposon-enco 33.3 78 0.0017 18.7 3.2 24 21-44 4-27 (37)
197 KOG0949|consensus 33.0 49 0.0011 34.3 3.6 46 127-189 989-1034(1330)
198 PF02887 PK_C: Pyruvate kinase 31.7 1.1E+02 0.0023 22.6 4.6 19 9-27 30-48 (117)
199 TIGR03158 cas3_cyano CRISPR-as 31.3 34 0.00074 30.8 2.1 23 197-219 320-342 (357)
200 PF13871 Helicase_C_4: Helicas 30.7 1.6E+02 0.0036 25.7 6.2 67 128-205 63-129 (278)
201 KOG1016|consensus 30.5 1.4E+02 0.0031 30.3 6.2 122 61-208 719-854 (1387)
202 COG1198 PriA Primosomal protei 29.1 1.4E+02 0.003 30.0 6.0 51 61-119 245-295 (730)
203 PF00220 Hormone_4: Neurohypop 29.0 23 0.00049 14.3 0.3 7 15-21 2-8 (9)
204 COG1110 Reverse gyrase [DNA re 28.8 5.8E+02 0.013 26.9 10.2 77 61-157 335-419 (1187)
205 KOG0346|consensus 28.7 1.9E+02 0.0042 27.3 6.4 101 42-155 72-189 (569)
206 COG1110 Reverse gyrase [DNA re 27.4 2.9E+02 0.0062 29.1 7.8 65 61-134 125-189 (1187)
207 smart00545 JmjN Small domain f 26.5 80 0.0017 19.2 2.5 36 64-100 2-37 (42)
208 KOG0090|consensus 26.3 30 0.00065 29.2 0.8 29 190-220 90-118 (238)
209 COG1111 MPH1 ERCC4-like helica 26.1 2.7E+02 0.0058 26.7 7.0 74 61-150 58-138 (542)
210 KOG0389|consensus 25.4 7.3E+02 0.016 25.5 10.0 84 94-198 801-886 (941)
211 PF05265 DUF723: Protein of un 25.1 76 0.0017 21.0 2.4 27 9-35 9-35 (60)
212 KOG0385|consensus 25.0 4.4E+02 0.0095 26.9 8.4 101 94-221 511-623 (971)
213 PF02684 LpxB: Lipid-A-disacch 24.7 1.7E+02 0.0037 26.8 5.4 42 61-102 183-226 (373)
214 COG0513 SrmB Superfamily II DN 24.3 4.5E+02 0.0097 25.0 8.4 48 64-115 102-149 (513)
215 COG0553 HepA Superfamily II DN 24.0 3.1E+02 0.0068 27.3 7.7 106 63-198 713-820 (866)
216 COG2519 GCD14 tRNA(1-methylade 23.8 2.2E+02 0.0048 24.6 5.6 48 30-84 163-211 (256)
217 KOG0339|consensus 23.0 2E+02 0.0043 27.8 5.5 59 61-134 295-354 (731)
218 KOG1133|consensus 22.4 3.8E+02 0.0082 26.9 7.4 53 29-83 599-651 (821)
219 COG0763 LpxB Lipid A disacchar 21.4 2.6E+02 0.0056 25.8 5.8 46 60-105 186-233 (381)
220 KOG0071|consensus 20.9 1.7E+02 0.0036 23.2 3.9 16 39-54 95-110 (180)
221 PF05729 NACHT: NACHT domain 20.6 1.6E+02 0.0034 22.3 3.9 54 61-114 80-140 (166)
No 1
>KOG0923|consensus
Probab=100.00 E-value=3.2e-57 Score=414.81 Aligned_cols=221 Identities=52% Similarity=0.843 Sum_probs=205.6
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++.|||+|+++|+.||++|||+.+|||.|||++||.+.|+.||+++|+.++++||.++. .|||||||+|++||+.+.+.
T Consensus 414 lIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp-~GDILVFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 414 LISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQP-LGDILVFLTGQEEIETVKEN 492 (902)
T ss_pred EeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccC-CccEEEEeccHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999874 79999999999999999999
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
|.+.++.|+.+-.++-++|+||.|+.+.|.++|++.|.+ .||++++|||||||+||+|+.||||||+.|++.|+
T Consensus 493 l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g------aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsyn 566 (902)
T KOG0923|consen 493 LKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG------ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYN 566 (902)
T ss_pred HHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC------ceeEEEeecchhhceeecCeEEEecCccccccCcC
Confidence 999999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred CccccccceEEEcccchHHHHhcccCCCCCCccccccce---------------eccccccceeecC--ceEEEEeCCCc
Q psy2956 161 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV---------------VSTNIAETSLTID--GVVFVIDPGFA 223 (251)
Q Consensus 161 ~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i---------------~aTniaEtsiti~--~v~~ViD~g~~ 223 (251)
|+.++.+|.+.|||+++|.||+|||||++||+|||||+- ..||++-.-|.+. ||.-+|+..|+
T Consensus 567 prtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFm 646 (902)
T KOG0923|consen 567 PRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFL 646 (902)
T ss_pred CCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccC
Confidence 999999999999999999999999999999999999983 4577776655443 77777887777
Q ss_pred cceee
Q psy2956 224 KQKVY 228 (251)
Q Consensus 224 k~~~~ 228 (251)
..+-+
T Consensus 647 DpPp~ 651 (902)
T KOG0923|consen 647 DPPPT 651 (902)
T ss_pred CCCCh
Confidence 65543
No 2
>KOG0922|consensus
Probab=100.00 E-value=1.7e-56 Score=412.39 Aligned_cols=192 Identities=55% Similarity=0.913 Sum_probs=184.5
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++||||+|+++|++||++||++.||||+|||+++|.+.+..||+++++.++++||.++ ++|||||||+|++||+.+++.
T Consensus 199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E-~~GDILvFLtGqeEIe~~~~~ 277 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTE-PPGDILVFLTGQEEIEAACEL 277 (674)
T ss_pred EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccC-CCCCEEEEeCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999985 699999999999999999999
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
|.+..+.+....+. .++|+||+|+.++|.++|.++|.+ .||+|++|||||||+||||+.||||+|+.|++.|+
T Consensus 278 l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g------~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 278 LRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPG------KRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCC------cceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99988888766666 889999999999999999999988 89999999999999999999999999999999999
Q ss_pred CccccccceEEEcccchHHHHhcccCCCCCCcccccccee
Q psy2956 161 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVV 200 (251)
Q Consensus 161 ~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~ 200 (251)
+..++..|.+.|||+++|.||+|||||++||+|||||+.-
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~ 390 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTES 390 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHH
Confidence 9999999999999999999999999999999999999854
No 3
>KOG0925|consensus
Probab=100.00 E-value=7.1e-54 Score=382.08 Aligned_cols=193 Identities=77% Similarity=1.212 Sum_probs=185.0
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
+.||||+|+.+|++||+|||+++||| +|||+++|.++++.||+++|++++++||..++ +|||||||+|++||+++|++
T Consensus 195 vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee-~GDilvFLtgeeeIe~aC~~ 272 (699)
T KOG0925|consen 195 VVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEE-PGDILVFLTGEEEIEDACRK 272 (699)
T ss_pred EEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccC-CCCEEEEecCHHHHHHHHHH
Confidence 47999999999999999999999999 89999999999999999999999999999987 99999999999999999999
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
+..+..+++.+.++++++||| +..|+++|.+.| ....|.++||++++||+||+|++|+|+++|||+|++++++||
T Consensus 273 i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p-~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYN 347 (699)
T KOG0925|consen 273 ISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAP-EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYN 347 (699)
T ss_pred HHHHHHhhccccCCceEEecC----chhhccccCCCC-cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccC
Confidence 999999999999999999999 567888999888 556688899999999999999999999999999999999999
Q ss_pred CccccccceEEEcccchHHHHhcccCCCCCCcccccccee
Q psy2956 161 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVV 200 (251)
Q Consensus 161 ~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~ 200 (251)
|++++.+|.+.||||++|+||+|||||++||+|||||+.-
T Consensus 348 PRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 348 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred cceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 9999999999999999999999999999999999999864
No 4
>KOG0924|consensus
Probab=100.00 E-value=9.1e-52 Score=379.82 Aligned_cols=203 Identities=48% Similarity=0.827 Sum_probs=189.0
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
+..|||||+++|++||||||.+.||||+|||++.|...+..||+++++..++.||... .+||||||+||+++|+-.|..
T Consensus 504 iVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~-~~GdilIfmtGqediE~t~~~ 582 (1042)
T KOG0924|consen 504 IVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSG-PPGDILIFMTGQEDIECTCDI 582 (1042)
T ss_pred EEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccC-CCCCEEEecCCCcchhHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999876 589999999999999999999
Q ss_pred HHHhhhhcCCC-CCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceee
Q psy2956 81 IKKEIDNLGPE-AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVY 159 (251)
Q Consensus 81 L~~~~~~l~~~-~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~ 159 (251)
+.+.+..+... ..+|+|+|+|+.|+++.|.++|..++.+ .||+||+|||||||+||||+.||||||+.|.++|
T Consensus 583 i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~------vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 583 IKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG------VRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred HHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC------ceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 98877665432 2489999999999999999999999988 8999999999999999999999999999999999
Q ss_pred CCccccccceEEEcccchHHHHhcccCCCCCCccccccce---------------eccccccceee
Q psy2956 160 NPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV---------------VSTNIAETSLT 210 (251)
Q Consensus 160 ~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i---------------~aTniaEtsit 210 (251)
|+..++..|.+.|||+++|.||+|||||++||.|||||+. ..||++-+-|-
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLl 722 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLL 722 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHH
Confidence 9999999999999999999999999999999999999985 35787776543
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-50 Score=385.63 Aligned_cols=187 Identities=51% Similarity=0.810 Sum_probs=177.1
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhH-HHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDY-LEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACK 79 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~-~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~ 79 (251)
+.||||+|.++|++||++||+++++||+|||+++|.+....|| +++++..++++|..++ .|||||||||++||+.+++
T Consensus 199 IimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~-~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 199 IIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREG-SGSILVFLPGQREIERTAE 277 (845)
T ss_pred EEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCC-CCCEEEECCcHHHHHHHHH
Confidence 4799999999999999999999999999999999999998999 9999999999998876 9999999999999999999
Q ss_pred HHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceee
Q psy2956 80 RIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVY 159 (251)
Q Consensus 80 ~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~ 159 (251)
.|.+ +.+. +++.|+|+|+.|+.++|.++|++.|.+ .||||+||||||||+||||++||||+|+++++.|
T Consensus 278 ~L~~--~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~------~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 278 WLEK--AELG---DDLEILPLYGALSAEEQVRVFEPAPGG------KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred HHHh--cccc---CCcEEeeccccCCHHHHHhhcCCCCCC------cceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 9987 2222 589999999999999999999999876 6999999999999999999999999999999999
Q ss_pred CCccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 160 NPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 160 ~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
++..++..|.+.|||+++|.||+|||||+.||+|||||+.
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse 386 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccCCCceEEEecCH
Confidence 9999999999999999999999999999999999999984
No 6
>KOG0926|consensus
Probab=100.00 E-value=2e-42 Score=322.64 Aligned_cols=191 Identities=41% Similarity=0.671 Sum_probs=174.2
Q ss_pred CeeeeccChHHHH---HhcCC-CCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTR---QYFDN-APLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~-~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
++||||+..+.|. ..|.. +|+|.|+.|+|||.+||......||+..|.+.++.||..- ++|.||||++|+.|+++
T Consensus 418 IIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~ILVFvTGQqEV~q 496 (1172)
T KOG0926|consen 418 IIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGGILVFVTGQQEVDQ 496 (1172)
T ss_pred EEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcC-CCCcEEEEEeChHHHHH
Confidence 5799999999888 56654 6899999999999999999999999999999999999875 59999999999999999
Q ss_pred HHHHHHHhhh-------------------h--------------------------------------------c-----
Q psy2956 77 ACKRIKKEID-------------------N--------------------------------------------L----- 88 (251)
Q Consensus 77 ~~~~L~~~~~-------------------~--------------------------------------------l----- 88 (251)
+|++|++... . +
T Consensus 497 L~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~ 576 (1172)
T KOG0926|consen 497 LCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENG 576 (1172)
T ss_pred HHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccc
Confidence 9999986411 0 0
Q ss_pred ----------------------CCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceE
Q psy2956 89 ----------------------GPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVV 146 (251)
Q Consensus 89 ----------------------~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~ 146 (251)
...++.|.++||||-|+.++|.++|...|.+ .|-|+|+||+||||+||||+.
T Consensus 577 ~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g------~RLcVVaTNVAETSLTIPgIk 650 (1172)
T KOG0926|consen 577 SVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKG------ERLCVVATNVAETSLTIPGIK 650 (1172)
T ss_pred cccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCC------ceEEEEeccchhcccccCCee
Confidence 0012369999999999999999999999998 899999999999999999999
Q ss_pred EEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 147 FVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 147 lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
||+|+|.+|...||..++++.+.+.|||+++|.||+|||||++||+|||||+
T Consensus 651 YVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYS 702 (1172)
T KOG0926|consen 651 YVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYS 702 (1172)
T ss_pred EEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhh
Confidence 9999999999999999999999999999999999999999999999999997
No 7
>KOG0920|consensus
Probab=100.00 E-value=7.4e-43 Score=336.21 Aligned_cols=193 Identities=38% Similarity=0.634 Sum_probs=166.6
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCC-----------------chh--------------HHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEP-----------------ERD--------------YLEAAIR 49 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~-----------------~~~--------------~~~~~~~ 49 (251)
++||||+|+++|++||++||+++|||++|||++||+++- +.+ -.+....
T Consensus 323 ILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~ 402 (924)
T KOG0920|consen 323 ILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIED 402 (924)
T ss_pred EEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHH
Confidence 579999999999999999999999999999999996420 111 0122344
Q ss_pred HHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceE
Q psy2956 50 TVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKV 129 (251)
Q Consensus 50 ~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rki 129 (251)
.+..|+.. +.+|.|||||||++||..++++|..... ...+..+-++++|+.|+.++|+++|..+|.+ .||+
T Consensus 403 li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~--f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g------~RKI 473 (924)
T KOG0920|consen 403 LIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLP--FADSLKFAILPLHSSIPSEEQQAVFKRPPKG------TRKI 473 (924)
T ss_pred HHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhccc--cccccceEEEeccccCChHHHHHhcCCCCCC------cchh
Confidence 55566665 4589999999999999999999875321 1222468899999999999999999999987 8999
Q ss_pred EEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceecc
Q psy2956 130 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVST 202 (251)
Q Consensus 130 ivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aT 202 (251)
|++|||||||+|||+++||||+|..|.+.||+..++++|...|+|+++|+||+|||||.++|.|||||+..--
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986543
No 8
>KOG0922|consensus
Probab=100.00 E-value=1.4e-40 Score=307.07 Aligned_cols=182 Identities=36% Similarity=0.456 Sum_probs=146.9
Q ss_pred CCEEEecCCHHH-----------------HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCC
Q psy2956 62 GDVLLFLTGQEE-----------------IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPA 118 (251)
Q Consensus 62 g~iLvFLpg~~e-----------------i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~ 118 (251)
...+.||++..- +||+||| |...+|.+.+++++||+|+|||||++++|+.||+.+|.
T Consensus 140 ~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i 219 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPI 219 (674)
T ss_pred ceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCce
Confidence 457788886432 6888888 67788999999999999999999999999999999999
Q ss_pred CCCCCCccceEEE---ec-----Ccc----cceeee-----cceEEEEeCCcccceee-----CC----ccccccceEEE
Q psy2956 119 NKPNGGIGRKVVV---ST-----NIA----ETSLTI-----DGVVFVIDPGFAKQKVY-----NP----RIRVESLLVSP 172 (251)
Q Consensus 119 ~~~~g~~~rkiiv---st-----~ia----etsltI-----~g~~lVfd~G~~~~~~~-----~~----~~~~~~l~~~p 172 (251)
..++ ||.++| .+ |+. .+.+.| ||++|||+||++++... +. ..+.+. .+.|
T Consensus 220 ~~i~---GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lp 295 (674)
T KOG0922|consen 220 LTIP---GRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILP 295 (674)
T ss_pred Eeec---CCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeee
Confidence 9999 555554 33 333 233333 79999999999987531 11 111222 7889
Q ss_pred cccc--hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhh
Q psy2956 173 ISKA--SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250 (251)
Q Consensus 173 is~~--~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR 250 (251)
+|.+ +.+|. |++.+.|+.+ +|+++||||||||||||||+||||+|++|++.|||++|+++|.++|||||||+||
T Consensus 296 ly~aL~~e~Q~--rvF~p~p~g~--RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 296 LYGALPSEEQS--RVFDPAPPGK--RKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred ecccCCHHHhh--ccccCCCCCc--ceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 9876 55555 6777777432 5999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy2956 251 A 251 (251)
Q Consensus 251 ~ 251 (251)
+
T Consensus 372 a 372 (674)
T KOG0922|consen 372 A 372 (674)
T ss_pred c
Confidence 6
No 9
>KOG0923|consensus
Probab=100.00 E-value=2.7e-40 Score=303.65 Aligned_cols=184 Identities=39% Similarity=0.499 Sum_probs=149.2
Q ss_pred CCCEEEecCCHHH-----------------HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCC
Q psy2956 61 EGDVLLFLTGQEE-----------------IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAP 117 (251)
Q Consensus 61 ~g~iLvFLpg~~e-----------------i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p 117 (251)
...+|-+|++..- ||++||+ |-..++++.+-||+||++++||||++++|+.||+++|
T Consensus 354 ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdap 433 (902)
T KOG0923|consen 354 EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAP 433 (902)
T ss_pred cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCc
Confidence 3567777776442 7888988 4567888888999999999999999999999999999
Q ss_pred CCCCCCCccceEEEecC--------cc----cceeee-----cceEEEEeCCcccceee---------CCccccccceEE
Q psy2956 118 ANKPNGGIGRKVVVSTN--------IA----ETSLTI-----DGVVFVIDPGFAKQKVY---------NPRIRVESLLVS 171 (251)
Q Consensus 118 ~~~~~g~~~rkiivst~--------ia----etsltI-----~g~~lVfd~G~~~~~~~---------~~~~~~~~l~~~ 171 (251)
...+| +|+++|.+. +. .|.++| .|+++||++|++++... ........+.++
T Consensus 434 IF~iP---GRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~ 510 (902)
T KOG0923|consen 434 IFRIP---GRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVL 510 (902)
T ss_pred EEecc---CcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEe
Confidence 99999 666766432 22 355666 49999999999986531 123346778999
Q ss_pred Ecccc--hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhh
Q psy2956 172 PISKA--SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQ 249 (251)
Q Consensus 172 pis~~--~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~q 249 (251)
|||.+ +..|. --+-.++||. +|+++||||||||||||||+||||+||+|++.|||++||++|.++|||||||.|
T Consensus 511 PiYaNLPselQa-kIFePtP~ga---RKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~Q 586 (902)
T KOG0923|consen 511 PIYANLPSELQA-KIFEPTPPGA---RKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQ 586 (902)
T ss_pred eccccCChHHHH-hhcCCCCCCc---eeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhh
Confidence 99975 44443 2333455564 599999999999999999999999999999999999999999999999999999
Q ss_pred hC
Q psy2956 250 RA 251 (251)
Q Consensus 250 R~ 251 (251)
||
T Consensus 587 Ra 588 (902)
T KOG0923|consen 587 RA 588 (902)
T ss_pred hc
Confidence 96
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.2e-37 Score=301.73 Aligned_cols=186 Identities=38% Similarity=0.612 Sum_probs=164.8
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++||||++.+.|++||+++|+|.++|+.|||+++|.+....+++...+...+..+..+ ..|+|||||||.+||+.+++.
T Consensus 150 IlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 150 LAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred EEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999999999999998776666655443333322222 379999999999999999999
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
|.+.+. ++++++++|+.|+.++|.+.|...+.+ .+||++|||+||+|+||||+.+|||+|+.+...||
T Consensus 229 L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G------~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd 296 (819)
T TIGR01970 229 LAERLD------SDVLICPLYGELSLAAQDRAIKPDPQG------RRKVVLATNIAETSLTIEGIRVVIDSGLARVARFD 296 (819)
T ss_pred HHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccC------CeEEEEecchHhhcccccCceEEEEcCcccccccc
Confidence 875321 479999999999999999999988876 79999999999999999999999999999999999
Q ss_pred CccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 161 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 161 ~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
+..+++.|.+.|||++++.||+||+||..||.|||||+.
T Consensus 297 ~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 297 PKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred cccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCH
Confidence 999999999999999999999999999999999999974
No 11
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-37 Score=309.77 Aligned_cols=183 Identities=42% Similarity=0.671 Sum_probs=162.3
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCc------hhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPE------RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~------~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|+||||+|.+.|++||+++|+|.++|++|||+++|.+... .++.+.+++.+..++.. .+|+|||||||..||
T Consensus 215 IlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~--~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 215 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE--GPGDILIFLPGEREI 292 (1283)
T ss_pred EEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhh--CCCCEEEeCCCHHHH
Confidence 5799999999999999999999999999999999986532 24666666666665532 479999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|.+. ..+++.++++|+.|+.++|.++|...+ +|+|++|||+||+|+||||+.+|||+|+.
T Consensus 293 ~~l~~~L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--------~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 293 RDAAEILRKR------NLRHTEILPLYARLSNKEQQRVFQPHS--------GRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred HHHHHHHHhc------CCCCcEEEeccCCCCHHHHHHHhCCCC--------CceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 9999998753 124688999999999999999997532 58999999999999999999999999999
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
++..|++..++..|.+.|+|++++.||+||+||++||.|||||+.
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte 403 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSE 403 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCH
Confidence 999999999999999999999999999999999999999999973
No 12
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.4e-36 Score=296.40 Aligned_cols=186 Identities=35% Similarity=0.579 Sum_probs=166.2
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++||||++.+.|++||+++|+|.++|+.|||+++|.+.+..++++..+..++..+..+ ..|++|||+||.+||+.+++.
T Consensus 153 ilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 153 LIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred EEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999998877777765544444433333 379999999999999999999
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
|...+. .++.+.++|+.|+.++|.+.|...+.+ .+|+++|||+||+|+||||+.+|||+|+.+...||
T Consensus 232 L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G------~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd 299 (812)
T PRK11664 232 LASRVA------SDVLLCPLYGALSLAEQQKAILPAPAG------RRKVVLATNIAETSLTIEGIRLVVDSGLERVARFD 299 (812)
T ss_pred HHHhcc------CCceEEEeeCCCCHHHHHHHhccccCC------CeEEEEecchHHhcccccCceEEEECCCccccccc
Confidence 985321 368899999999999999999887776 79999999999999999999999999999999999
Q ss_pred CccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 161 PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 161 ~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
+..+++.|.+.|||++++.||+||+||.+||.|||||+.
T Consensus 300 ~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 300 PKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred ccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCH
Confidence 999999999999999999999999999999999999974
No 13
>KOG0925|consensus
Probab=100.00 E-value=2.2e-37 Score=276.64 Aligned_cols=176 Identities=46% Similarity=0.557 Sum_probs=142.5
Q ss_pred HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcc-----c----c
Q psy2956 74 IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIA-----E----T 138 (251)
Q Consensus 74 i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ia-----e----t 138 (251)
+|++||| |.+.+|.+..++|+||+|+|||++++.+|++||+++|...++|.....+ +.|+-+ | +
T Consensus 165 LDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi-~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 165 LDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEI-FYTPEPERDYLEAAIRT 243 (699)
T ss_pred echhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCCCCceEE-EecCCCChhHHHHHHHH
Confidence 4556666 6778888888899999999999999999999999999999998544433 455432 2 3
Q ss_pred eeee-----cceEEEEeCCccccee---------eCCccccccceEEEcccchHHHHhcccCCCCCCccccccceecccc
Q psy2956 139 SLTI-----DGVVFVIDPGFAKQKV---------YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNI 204 (251)
Q Consensus 139 sltI-----~g~~lVfd~G~~~~~~---------~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTni 204 (251)
.++| +|+++||++|.++++. -+...+...+.+.|+| ...|||.++.-...++..|-+|++++|||
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy-P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY-PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC-chhhccccCCCCcccCCCccceEEEEecc
Confidence 3444 8999999999998753 1233457789999999 55677766643333333455699999999
Q ss_pred ccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 205 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 205 aEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
||||+|||||+||||+||.|+|+|||++++++|+++|||||||+||+
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~ 369 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 369 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHh
Confidence 99999999999999999999999999999999999999999999996
No 14
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3.5e-36 Score=299.92 Aligned_cols=183 Identities=40% Similarity=0.674 Sum_probs=163.2
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCc------hhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPE------RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~------~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|+||||+|.+.|++||+++|+|.|+|++|||+++|.+... .+++..++..+..++. +.+|+|||||||.+||
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~--~~~GdILVFLpg~~EI 299 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR--EGPGDILIFMSGEREI 299 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHH
Confidence 5799999999999999999999999999999999987643 4567777776666653 3479999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... ..+.+.++++|+.|+.++|.++|.. .+ .+++++|||+||+|+||||+.||||+|+.
T Consensus 300 e~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g------~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 300 RDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HS------GRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred HHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cC------CeeEEEeccHHhhccccCcceEEEECCCc
Confidence 9999998752 2245779999999999999999985 23 78999999999999999999999999999
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
+++.|++..++..|.+.|+|++++.||+||+||.++|.|||||+.
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte 410 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSE 410 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCH
Confidence 999999999999999999999999999999999999999999973
No 15
>KOG0924|consensus
Probab=100.00 E-value=1.3e-36 Score=280.17 Aligned_cols=172 Identities=32% Similarity=0.453 Sum_probs=137.0
Q ss_pred HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEec--------Cccc--
Q psy2956 74 IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST--------NIAE-- 137 (251)
Q Consensus 74 i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst--------~iae-- 137 (251)
++++||+ |.+.++.+.+++.+||+|++||||++++|.+||+++|...++ +|.++|-+ |+.|
T Consensus 474 mDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~Ip---GRTyPV~~~~~k~p~eDYVeaa 550 (1042)
T KOG0924|consen 474 MDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIP---GRTYPVEIMYTKTPVEDYVEAA 550 (1042)
T ss_pred echhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeec---CCccceEEEeccCchHHHHHHH
Confidence 6778887 556778888889999999999999999999999999999999 56666533 3333
Q ss_pred --ceeee-----cceEEEEeCCcccceee--------CC--ccccccceEEEcccc-hHHHHhcccCCCCCCccccccce
Q psy2956 138 --TSLTI-----DGVVFVIDPGFAKQKVY--------NP--RIRVESLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 138 --tsltI-----~g~~lVfd~G~~~~~~~--------~~--~~~~~~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i 199 (251)
..++| +|+++||.||.+++..- .. ......|.++|||+. .+..+ .+.+...||.. +|+|
T Consensus 551 vkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ-~kiFq~a~~~v--RK~I 627 (1042)
T KOG0924|consen 551 VKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQ-AKIFQKAEGGV--RKCI 627 (1042)
T ss_pred HhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhh-hhhcccCCCCc--eeEE
Confidence 33555 69999999999876531 00 112357999999865 33221 23444444432 4999
Q ss_pred eccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 200 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 200 ~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+||||||||||||||.||||+|++|.++|||++||++|.++|||||+|+||+
T Consensus 628 vATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRa 679 (1042)
T KOG0924|consen 628 VATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRA 679 (1042)
T ss_pred EeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhc
Confidence 9999999999999999999999999999999999999999999999999996
No 16
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-36 Score=293.75 Aligned_cols=171 Identities=36% Similarity=0.465 Sum_probs=136.6
Q ss_pred HHHHHHH------HHHhhhhcCCCC-CCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcc---------c
Q psy2956 74 IEEACKR------IKKEIDNLGPEA-GELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIA---------E 137 (251)
Q Consensus 74 i~~~~~~------L~~~~~~l~~~~-~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ia---------e 137 (251)
|||+||| +...++.+.+.+ +|||+|+||||++.++|++||+++|...++ +|.++|.+-+. +
T Consensus 168 iDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~---GR~fPVei~Y~~~~~~d~~l~ 244 (845)
T COG1643 168 IDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIE---GRTYPVEIRYLPEAEADYILL 244 (845)
T ss_pred EcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEec---CCccceEEEecCCCCcchhHH
Confidence 7899999 445667755444 489999999999999999999999999888 66676654331 1
Q ss_pred ce----e-----eecceEEEEeCCcccceeeCCcc---cc-ccceEEEcccc--hHHHHhcccCCCCCCccccccceecc
Q psy2956 138 TS----L-----TIDGVVFVIDPGFAKQKVYNPRI---RV-ESLLVSPISKA--SAQQRAGRAGRTRPGKCFRYIVVVST 202 (251)
Q Consensus 138 ts----l-----tI~g~~lVfd~G~~~~~~~~~~~---~~-~~l~~~pis~~--~a~qR~gragr~~~G~c~Rl~~i~aT 202 (251)
.. + .-+|++|||+||..++....... .. ..+.++|+|.+ ..+|+ |++.+.||.+ +|||+||
T Consensus 245 ~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~--rvF~p~~~~~--RKVVlAT 320 (845)
T COG1643 245 DAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQV--RVFEPAPGGK--RKVVLAT 320 (845)
T ss_pred HHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHH--hhcCCCCCCc--ceEEEEc
Confidence 11 1 12799999999999876422111 12 56899999975 34444 4667777764 5799999
Q ss_pred ccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 203 NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 203 niaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
||||||||||||+||||+|+.|+++|||++|++.|.++|||||||+||+
T Consensus 321 NIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRa 369 (845)
T COG1643 321 NIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRA 369 (845)
T ss_pred cccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhc
Confidence 9999999999999999999999999999999999999999999999996
No 17
>KOG0920|consensus
Probab=99.97 E-value=8e-33 Score=266.99 Aligned_cols=171 Identities=32% Similarity=0.486 Sum_probs=133.6
Q ss_pred HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCc------------
Q psy2956 74 IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNI------------ 135 (251)
Q Consensus 74 i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~i------------ 135 (251)
+||+||| |+..++.+...+|+||+|.||||++++.|+.||+.+|...++| |.+++.+-+
T Consensus 293 vDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~g---rtfpV~~~fLEDil~~~~~~~ 369 (924)
T KOG0920|consen 293 VDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPG---RTFPVKEYFLEDILSKTGYVS 369 (924)
T ss_pred eeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecC---CCcchHHHHHHHHHHHhcccc
Confidence 5666776 5667788888999999999999999999999999999998884 444442210
Q ss_pred --------ccce-------------e---------------eecceEEEEeCCcccceeeCCc-------cccccceEEE
Q psy2956 136 --------AETS-------------L---------------TIDGVVFVIDPGFAKQKVYNPR-------IRVESLLVSP 172 (251)
Q Consensus 136 --------aets-------------l---------------tI~g~~lVfd~G~~~~~~~~~~-------~~~~~l~~~p 172 (251)
.|.+ + ..+|.++||+||++++...... .......+.|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilp 449 (924)
T KOG0920|consen 370 EDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILP 449 (924)
T ss_pred cccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEe
Confidence 1111 1 1279999999999987542111 1113478899
Q ss_pred cccc--hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhh
Q psy2956 173 ISKA--SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 250 (251)
Q Consensus 173 is~~--~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR 250 (251)
+|++ +.+|| .++...|+.| +|+++||||||||||||+|+||||+|++|++.|||.+.+++|..+|+|||+|+||
T Consensus 450 lHs~~~s~eQ~--~VF~~pp~g~--RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR 525 (924)
T KOG0920|consen 450 LHSSIPSEEQQ--AVFKRPPKGT--RKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQR 525 (924)
T ss_pred ccccCChHHHH--HhcCCCCCCc--chhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHh
Confidence 9875 44555 2334444443 5999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy2956 251 A 251 (251)
Q Consensus 251 ~ 251 (251)
+
T Consensus 526 ~ 526 (924)
T KOG0920|consen 526 R 526 (924)
T ss_pred c
Confidence 6
No 18
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=2.8e-29 Score=240.23 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=139.4
Q ss_pred CeeeeccC--hHHHHHhcCCCCeEEeCCCc-cceeeeeCCCCc-----hhHHHHHHHHHHHHhhc--cccCCCEEEecCC
Q psy2956 1 MQIFATRR--QHLTRQYFDNAPLMNVPGRT-HPVEIFYTPEPE-----RDYLEAAIRTVVQIHMC--EEVEGDVLLFLTG 70 (251)
Q Consensus 1 ~~~sAT~~--~~~~~~yf~~~pvi~i~g~~-~pV~~~y~~~~~-----~~~~~~~~~~v~~i~~~--~~~~g~iLvFLpg 70 (251)
++||||++ .+.|++||+++++++++|++ |||+++|.+... .++++.....+...+.. ....|++|||+||
T Consensus 325 ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 325 FLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred EEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECc
Confidence 57999995 66899999999999999996 999999976432 24444433333443332 1235799999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhH--HHhcccCCCCCCCCCccceEEEecCcccceeeecceEEE
Q psy2956 71 QEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQ--QRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFV 148 (251)
Q Consensus 71 ~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~--~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lV 148 (251)
.++++.+++.|.+.. +++.+.++|+.++..++ +++|. .+ .+++++|||+||+++||||+.+|
T Consensus 405 ~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~eq~l~~ff~---~g------k~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 405 VSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNIDEILEKVYS---SK------NPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred HHHHHHHHHHHHhhc-------CCceEEeccCCcCHHHHHHHHHhc---cC------ceeEEeccChhhccccccCeeEE
Confidence 999999999987532 46899999999998654 56662 23 68999999999999999999999
Q ss_pred EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
||+|+.+... +..+ ...|+|++++.||+||+||.+||.|||+|+.
T Consensus 469 ID~G~~k~p~--~~~g----~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~ 513 (675)
T PHA02653 469 YDTGRVYVPE--PFGG----KEMFISKSMRTQRKGRVGRVSPGTYVYFYDL 513 (675)
T ss_pred EECCCccCCC--cccC----cccccCHHHHHHhccCcCCCCCCeEEEEECH
Confidence 9999876542 2222 2469999999999999999999999999874
No 19
>KOG0926|consensus
Probab=99.92 E-value=7.1e-26 Score=212.35 Aligned_cols=81 Identities=43% Similarity=0.544 Sum_probs=69.3
Q ss_pred cceEEEcccc--hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccch
Q psy2956 167 SLLVSPISKA--SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISK 244 (251)
Q Consensus 167 ~l~~~pis~~--~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~ 244 (251)
.|.++|+|+- ...|+ |++-..|-.| +.+++|||+||||||||||+||||+|++|.+.||..+|+++..+.||||
T Consensus 604 pLyvLPLYSLLs~~~Q~--RVF~~~p~g~--RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSk 679 (1172)
T KOG0926|consen 604 PLYVLPLYSLLSTEKQM--RVFDEVPKGE--RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISK 679 (1172)
T ss_pred ceEEeehhhhcCHHHhh--hhccCCCCCc--eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeec
Confidence 5778899863 55555 4545445333 4678999999999999999999999999999999999999999999999
Q ss_pred hhHhhhC
Q psy2956 245 ASAQQRA 251 (251)
Q Consensus 245 ~~a~qR~ 251 (251)
|||+|||
T Consensus 680 ASadQRA 686 (1172)
T KOG0926|consen 680 ASADQRA 686 (1172)
T ss_pred cccchhc
Confidence 9999997
No 20
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=8.4e-26 Score=226.46 Aligned_cols=168 Identities=32% Similarity=0.428 Sum_probs=125.6
Q ss_pred HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcc-----------
Q psy2956 74 IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIA----------- 136 (251)
Q Consensus 74 i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ia----------- 136 (251)
|||+||+ +...++.+...++++++|.||||++.+.+.++|+++|...++| |.+++...+.
T Consensus 185 IDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~fa~~F~~apvI~V~G---r~~PVev~Y~~~~~~~~~~~~ 261 (1283)
T TIGR01967 185 IDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSG---RTYPVEVRYRPLVEEQEDDDL 261 (1283)
T ss_pred EcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHHHHHhcCCCEEEECC---CcccceeEEecccccccchhh
Confidence 5777774 3344566666778999999999999999999999888776664 3333322111
Q ss_pred ---cce---e-----eecceEEEEeCCcccceeeCCc---cccccceEEEcccc---hHHHHhcccCCCCCCccccccce
Q psy2956 137 ---ETS---L-----TIDGVVFVIDPGFAKQKVYNPR---IRVESLLVSPISKA---SAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 137 ---ets---l-----tI~g~~lVfd~G~~~~~~~~~~---~~~~~l~~~pis~~---~a~qR~gragr~~~G~c~Rl~~i 199 (251)
+.. + .-+|.++||++|..++...... .....+.+.|+|.. ..+++++ +..++ ++++
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf---~~~~~----rkIV 334 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVF---QPHSG----RRIV 334 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHh---CCCCC----ceEE
Confidence 000 0 1269999999999887542211 12235678999875 3344443 33222 3899
Q ss_pred eccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 200 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 200 ~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+||||||||||||||+||||+|+.|.+.|||+++++.|.+.|||||+|.||+
T Consensus 335 LATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRa 386 (1283)
T TIGR01967 335 LATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRK 386 (1283)
T ss_pred EeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999996
No 21
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.90 E-value=8.8e-25 Score=213.64 Aligned_cols=152 Identities=32% Similarity=0.465 Sum_probs=114.3
Q ss_pred CCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccc------------ee-----eecceEEEEeCCcc
Q psy2956 92 AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAET------------SL-----TIDGVVFVIDPGFA 154 (251)
Q Consensus 92 ~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaet------------sl-----tI~g~~lVfd~G~~ 154 (251)
+++++++.||||++.+.+++||++++...++| +.+.+.+.+... .+ .-+|.++||.+|..
T Consensus 144 r~dlqlIlmSATl~~~~l~~~l~~~~vI~~~g---r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ 220 (819)
T TIGR01970 144 REDLKILAMSATLDGERLSSLLPDAPVVESEG---RSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQA 220 (819)
T ss_pred CCCceEEEEeCCCCHHHHHHHcCCCcEEEecC---cceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHH
Confidence 46899999999999999999998877665553 334332221100 00 12689999999998
Q ss_pred cceeeCCccc---cccceEEEcccc--h-HHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceee
Q psy2956 155 KQKVYNPRIR---VESLLVSPISKA--S-AQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVY 228 (251)
Q Consensus 155 ~~~~~~~~~~---~~~l~~~pis~~--~-a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~ 228 (251)
++........ ...+.+.|+|.. . .++++... .++|+ +++++||||||||||||||.||||+|+.|++.|
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~--~~~G~---rkVlVATnIAErgItIp~V~~VID~Gl~r~~~y 295 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKP--DPQGR---RKVVLATNIAETSLTIEGIRVVIDSGLARVARF 295 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhh--cccCC---eEEEEecchHhhcccccCceEEEEcCccccccc
Confidence 7654321111 135788999875 2 33444432 33454 489999999999999999999999999999999
Q ss_pred ccCCCcceeeeeccchhhHhhhC
Q psy2956 229 NPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 229 ~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
||++|++.|.++|||||||.||+
T Consensus 296 d~~~g~~~L~~~~iSkasa~QR~ 318 (819)
T TIGR01970 296 DPKTGITRLETVRISQASATQRA 318 (819)
T ss_pred ccccCCceeeEEEECHHHHHhhh
Confidence 99999999999999999999996
No 22
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=7.3e-25 Score=219.27 Aligned_cols=168 Identities=30% Similarity=0.418 Sum_probs=124.9
Q ss_pred HHHHHHH------HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCc------------
Q psy2956 74 IEEACKR------IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNI------------ 135 (251)
Q Consensus 74 i~~~~~~------L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~i------------ 135 (251)
|||+||+ +...++.+.++++++++|.||||++.+.+.++|.++|...++|+ .+.+...+
T Consensus 192 IDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~fs~~F~~apvI~V~Gr---~~pVei~y~p~~~~~~~~~~ 268 (1294)
T PRK11131 192 IDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGR---TYPVEVRYRPIVEEADDTER 268 (1294)
T ss_pred ecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHHHHHHcCCCCEEEEcCc---cccceEEEeecccccchhhH
Confidence 5777765 23456667777889999999999999999999998887666643 23221111
Q ss_pred --cccee--------eecceEEEEeCCcccceeeCCc---cccccceEEEcccc--hH-HHHhcccCCCCCCccccccce
Q psy2956 136 --AETSL--------TIDGVVFVIDPGFAKQKVYNPR---IRVESLLVSPISKA--SA-QQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 136 --aetsl--------tI~g~~lVfd~G~~~~~~~~~~---~~~~~l~~~pis~~--~a-~qR~gragr~~~G~c~Rl~~i 199 (251)
.+..+ .-+|.++||.+|..++...... .+.....+.|+|.. .+ +++++ .. .|+ ++++
T Consensus 269 d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf---~~-~g~---rkII 341 (1294)
T PRK11131 269 DQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVF---QS-HSG---RRIV 341 (1294)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHh---cc-cCC---eeEE
Confidence 01111 1268999999999876542211 13345668899875 23 33333 32 343 4899
Q ss_pred eccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 200 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 200 ~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+||||||||||||||+||||+|++|++.|||+++++.|.+.|||||+|.||+
T Consensus 342 VATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRa 393 (1294)
T PRK11131 342 LATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK 393 (1294)
T ss_pred EeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhc
Confidence 9999999999999999999999999999999999999999999999999996
No 23
>KOG0921|consensus
Probab=99.90 E-value=3.7e-24 Score=202.61 Aligned_cols=204 Identities=35% Similarity=0.544 Sum_probs=164.8
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCC--------------------------Cch----h--------
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPE--------------------------PER----D-------- 42 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~--------------------------~~~----~-------- 42 (251)
++||||+|.++|..||+.+|.+.+.|++|||..||+.. +.+ |
T Consensus 529 ~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 47999999999999999999999999999999988521 000 0
Q ss_pred H----------------HHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCCh
Q psy2956 43 Y----------------LEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPP 106 (251)
Q Consensus 43 ~----------------~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~ 106 (251)
| .....+..+.....+..+|.||||||||++|-.++.+|+.. +...+.....++++|+.+..
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~--~~fg~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEH--QEFGQANKYEILPLHSQLTS 686 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhh--hhhccchhcccccchhhccc
Confidence 0 01112222222334456899999999999999999998754 22233446778999999999
Q ss_pred hhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccC
Q psy2956 107 NLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAG 186 (251)
Q Consensus 107 ~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~grag 186 (251)
++|+++|+..|.+ .+|+|++||+||+++||+++++|+|....+...|.....+......|.++-+.+||.||+|
T Consensus 687 ~eqrkvf~~~p~g------v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEG------VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred HhhhhccCccccc------ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 9999999998877 7899999999999999999999999999999888887788888999999999999999999
Q ss_pred CCCCCcccccccee--------------ccccccceeecC
Q psy2956 187 RTRPGKCFRYIVVV--------------STNIAETSLTID 212 (251)
Q Consensus 187 r~~~G~c~Rl~~i~--------------aTniaEtsiti~ 212 (251)
|.+||.|||+.... .|...|..+||.
T Consensus 761 rvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTik 800 (1282)
T KOG0921|consen 761 RVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIK 800 (1282)
T ss_pred eecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHH
Confidence 99999999976542 355566666653
No 24
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.89 E-value=6e-24 Score=208.03 Aligned_cols=152 Identities=31% Similarity=0.460 Sum_probs=113.5
Q ss_pred CCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCc--------ccc--------eee-ecceEEEEeCCcc
Q psy2956 92 AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNI--------AET--------SLT-IDGVVFVIDPGFA 154 (251)
Q Consensus 92 ~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~i--------aet--------slt-I~g~~lVfd~G~~ 154 (251)
+++++++.||||++.+.+++||.+++...++| +.+.+.+.+ .+. .+. -+|.++||.+|..
T Consensus 147 r~~lqlilmSATl~~~~l~~~~~~~~~I~~~g---r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ 223 (812)
T PRK11664 147 RDDLKLLIMSATLDNDRLQQLLPDAPVIVSEG---RSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVG 223 (812)
T ss_pred CccceEEEEecCCCHHHHHHhcCCCCEEEecC---ccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHH
Confidence 46899999999999999999998777655553 333322111 110 011 1699999999998
Q ss_pred cceeeCCccc---cccceEEEcccc--hH-HHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceee
Q psy2956 155 KQKVYNPRIR---VESLLVSPISKA--SA-QQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVY 228 (251)
Q Consensus 155 ~~~~~~~~~~---~~~l~~~pis~~--~a-~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~ 228 (251)
++........ ...+.+.|+|.. .. ++++.. ..++|+ +++++||||||||||||||.||||+|+.|++.|
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~--~~~~G~---rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~y 298 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAIL--PAPAGR---RKVVLATNIAETSLTIEGIRLVVDSGLERVARF 298 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhc--cccCCC---eEEEEecchHHhcccccCceEEEECCCcccccc
Confidence 7754322111 135778899875 33 333332 234564 489999999999999999999999999999999
Q ss_pred ccCCCcceeeeeccchhhHhhhC
Q psy2956 229 NPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 229 ~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
||++|++.|.++|||||+|.||+
T Consensus 299 d~~~g~~~L~~~~iSkasa~QR~ 321 (812)
T PRK11664 299 DPKTGLTRLVTQRISQASMTQRA 321 (812)
T ss_pred cccCCcceeEEEeechhhhhhhc
Confidence 99999999999999999999996
No 25
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.66 E-value=3.5e-17 Score=157.32 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=93.9
Q ss_pred EEEEccCCCCh--hhHHHhcccCCCCCCCCCc--cceEEEec---------Ccccc----e----e---e-ecceEEEEe
Q psy2956 96 KCIPLYSTLPP--NLQQRIFEAAPANKPNGGI--GRKVVVST---------NIAET----S----L---T-IDGVVFVID 150 (251)
Q Consensus 96 ~vi~lsatl~~--~~~~~~f~~~p~~~~~g~~--~rkiivst---------~iaet----s----l---t-I~g~~lVfd 150 (251)
+++.||||++. +.+++||++++...++|.. ..+..... ++.+. . . . -+|.++||.
T Consensus 323 q~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFl 402 (675)
T PHA02653 323 SLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFV 402 (675)
T ss_pred EEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEE
Confidence 79999999964 5778899876655555431 11111100 00000 0 0 0 136899999
Q ss_pred CCcccceeeCCccc--cccceEEEcccc--hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccce
Q psy2956 151 PGFAKQKVYNPRIR--VESLLVSPISKA--SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQK 226 (251)
Q Consensus 151 ~G~~~~~~~~~~~~--~~~l~~~pis~~--~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~ 226 (251)
+|..+......... .+.+.+.|+|.. +.+|..-+.. ++|+ +++++||||||+|||||||.+|||+|++|.+
T Consensus 403 pg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff--~~gk---~kILVATdIAERGIDIp~V~~VID~G~~k~p 477 (675)
T PHA02653 403 ASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVY--SSKN---PSIIISTPYLESSVTIRNATHVYDTGRVYVP 477 (675)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHh--ccCc---eeEEeccChhhccccccCeeEEEECCCccCC
Confidence 99887654322211 124778999875 2222111111 2354 4899999999999999999999999999877
Q ss_pred eeccCCCcceeeeeccchhhHhhhC
Q psy2956 227 VYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 227 ~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
. |..++ ..|||||+|.||+
T Consensus 478 ~--~~~g~----~~~iSkasa~QRa 496 (675)
T PHA02653 478 E--PFGGK----EMFISKSMRTQRK 496 (675)
T ss_pred C--cccCc----ccccCHHHHHHhc
Confidence 3 55555 4699999999996
No 26
>KOG0921|consensus
Probab=99.56 E-value=1.2e-15 Score=145.43 Aligned_cols=166 Identities=28% Similarity=0.363 Sum_probs=124.0
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCc-------------------------cceEE-----
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGI-------------------------GRKVV----- 130 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~-------------------------~rkii----- 130 (251)
|+..+.....-.++|++++||+|++.+.|.+||..+|...+.|+. +|+..
T Consensus 512 ll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~ 591 (1282)
T KOG0921|consen 512 VLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEED 591 (1282)
T ss_pred HHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccC
Confidence 344444444556799999999999999999999999876655441 11110
Q ss_pred ------------EecC---------c------------------ccceeeecceEEEEeCCccccee-------eCCccc
Q psy2956 131 ------------VSTN---------I------------------AETSLTIDGVVFVIDPGFAKQKV-------YNPRIR 164 (251)
Q Consensus 131 ------------vst~---------i------------------aetsltI~g~~lVfd~G~~~~~~-------~~~~~~ 164 (251)
++.+ . .+.+-.|+|.++||++|+..+.. |+.-.+
T Consensus 592 ~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~ 671 (1282)
T KOG0921|consen 592 EEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQ 671 (1282)
T ss_pred chhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhcc
Confidence 0000 0 11222358999999999988754 233334
Q ss_pred cccceEEEcccc--hHHHHhcccCCCCC-CccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeec
Q psy2956 165 VESLLVSPISKA--SAQQRAGRAGRTRP-GKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSP 241 (251)
Q Consensus 165 ~~~l~~~pis~~--~a~qR~gragr~~~-G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~ 241 (251)
.....+.|+|+. ..+||. ..+.-| |+ .+++++||||||||||++|+||||+++.|.+.|-....+....++|
T Consensus 672 ~~~y~ilp~Hsq~~~~eqrk--vf~~~p~gv---~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw 746 (1282)
T KOG0921|consen 672 ANKYEILPLHSQLTSQEQRK--VFEPVPEGV---TKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVW 746 (1282)
T ss_pred chhcccccchhhcccHhhhh--ccCcccccc---cccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeec
Confidence 566678888764 556774 456666 65 3799999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhC
Q psy2956 242 ISKASAQQRA 251 (251)
Q Consensus 242 is~~~a~qR~ 251 (251)
.||-+-+||+
T Consensus 747 ~sktn~eqr~ 756 (1282)
T KOG0921|consen 747 ASKTNLEQRK 756 (1282)
T ss_pred ccccchHhhc
Confidence 9999999986
No 27
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.40 E-value=2.6e-12 Score=119.68 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=113.1
Q ss_pred CeeeeccChH--H-HHHhcCCCCeEEeCCC--ccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRRQH--L-TRQYFDNAPLMNVPGR--THPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~~~--~-~~~yf~~~pvi~i~g~--~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
++||||+..+ . ...|+.++..+.+... ...++.+|...+..+.++.+...+ .. ..++.+|||+++.++++
T Consensus 182 ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll-~~----~~~~~~lVF~~t~~~~~ 256 (460)
T PRK11776 182 LLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLL-LH----HQPESCVVFCNTKKECQ 256 (460)
T ss_pred EEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHH-Hh----cCCCceEEEECCHHHHH
Confidence 4799999743 3 3355555555666543 234666665554444444433322 21 23567999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
.+++.|... .+.+..+|+.++..++...+.....+ ..+++++|++++.+++||++.+||+.+.-
T Consensus 257 ~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g------~~~vLVaTdv~~rGiDi~~v~~VI~~d~p- 320 (460)
T PRK11776 257 EVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANR------SCSVLVATDVAARGLDIKALEAVINYELA- 320 (460)
T ss_pred HHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcC------CCcEEEEecccccccchhcCCeEEEecCC-
Confidence 999988753 67899999999999999988877766 57799999999999999999999995431
Q ss_pred ceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
-+..+-.||+||+||.+ .|.|+-+
T Consensus 321 -----------------~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 321 -----------------RDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred -----------------CCHhHhhhhcccccCCCCcceEEEE
Confidence 12223358999999965 4777643
No 28
>PRK01172 ski2-like helicase; Provisional
Probab=99.31 E-value=1e-11 Score=120.94 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=115.0
Q ss_pred Ceeeecc-ChHHHHHhcCCCCeEEeCCCccceeee--eCCC-----CchhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATR-RQHLTRQYFDNAPLMNVPGRTHPVEIF--YTPE-----PERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~-~~~~~~~yf~~~pvi~i~g~~~pV~~~--y~~~-----~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
+.+|||+ |.+.+++|++ ++.+....+..|+++. |... ...... .....+.+.. ...|++|||+++..
T Consensus 173 I~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~~---~~~~~vLVF~~sr~ 247 (674)
T PRK01172 173 LALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIKETV---NDGGQVLVFVSSRK 247 (674)
T ss_pred EEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHHHHH---hCCCcEEEEeccHH
Confidence 4689999 6888999885 5667777777777642 2211 111100 0111222211 23688999999999
Q ss_pred HHHHHHHHHHHhhhhcCCC---------CC-------CeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcc
Q psy2956 73 EIEEACKRIKKEIDNLGPE---------AG-------ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIA 136 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~---------~~-------~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ia 136 (251)
+++.+.+.|...+.....- .+ ...+...|+.|+.+++..++.....+ ..+++++|+.+
T Consensus 248 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g------~i~VLvaT~~l 321 (674)
T PRK01172 248 NAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR------YIKVIVATPTL 321 (674)
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC------CCeEEEecchh
Confidence 9999999887654321100 00 12367789999999999998877766 67899999999
Q ss_pred cceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 137 ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 137 etsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
+.++++|+...||+. ...|+ .....|++..+..||+|||||.+
T Consensus 322 a~Gvnipa~~VII~~----~~~~~------~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 322 AAGVNLPARLVIVRD----ITRYG------NGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred hccCCCcceEEEEcC----ceEeC------CCCceeCCHHHHHHHhhcCCCCC
Confidence 999999998877762 12222 12345788889999999999976
No 29
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.26 E-value=5e-11 Score=109.96 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=105.1
Q ss_pred CeeeeccChHH---HHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQHL---TRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~~---~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+.... ...+++++..+.+.... ..+...+......+.+..... +++ +...+.+|||+++...+
T Consensus 194 ~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~----~~~~~~~lVF~~t~~~~ 268 (423)
T PRK04837 194 MLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQT-LIE----EEWPDRAIIFANTKHRC 268 (423)
T ss_pred EEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHH-HHH----hcCCCeEEEEECCHHHH
Confidence 46899998543 33566666666665432 222222221222233322222 111 12356799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+.+.|.. .++++..+|+.++.+++...+.....+ ..+++++||+++.+++||++.+||+-
T Consensus 269 ~~l~~~L~~---------~g~~v~~lhg~~~~~~R~~~l~~F~~g------~~~vLVaTdv~~rGiDip~v~~VI~~--- 330 (423)
T PRK04837 269 EEIWGHLAA---------DGHRVGLLTGDVAQKKRLRILEEFTRG------DLDILVATDVAARGLHIPAVTHVFNY--- 330 (423)
T ss_pred HHHHHHHHh---------CCCcEEEecCCCChhHHHHHHHHHHcC------CCcEEEEechhhcCCCccccCEEEEe---
Confidence 998888764 267899999999999998888777666 56799999999999999999999984
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
+.......+ .||+||+||.+ .|.+
T Consensus 331 -----d~P~s~~~y----------iqR~GR~gR~G~~G~a 355 (423)
T PRK04837 331 -----DLPDDCEDY----------VHRIGRTGRAGASGHS 355 (423)
T ss_pred -----CCCCchhhe----------EeccccccCCCCCeeE
Confidence 333233333 37999999976 4665
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.25 E-value=4.9e-11 Score=114.92 Aligned_cols=155 Identities=17% Similarity=0.307 Sum_probs=111.4
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+.. +....|+.++..+.+.... ..+...|......+..++..+.+ .. + ....+|||+++..++
T Consensus 184 llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L-~~---~-~~~~~IVF~~tk~~a 258 (629)
T PRK11634 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL-EA---E-DFDAAIIFVRTKNAT 258 (629)
T ss_pred EEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHH-Hh---c-CCCCEEEEeccHHHH
Confidence 579999984 3456788877777776543 33444444433334444433322 21 1 246799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+++++.|... .+.+..+|+.++..++.+.+.....+ ..+++|+|++++..+++|++.+||+
T Consensus 259 ~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G------~~~ILVATdv~arGIDip~V~~VI~---- 319 (629)
T PRK11634 259 LEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDG------RLDILIATDVAARGLDVERISLVVN---- 319 (629)
T ss_pred HHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCC------CCCEEEEcchHhcCCCcccCCEEEE----
Confidence 9999988742 67889999999999998888776665 6679999999999999999999998
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCCC-Ccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKC 193 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c 193 (251)
|+.. .+..+-.||+||+||.+. |.+
T Consensus 320 ----~d~P----------~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 320 ----YDIP----------MDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred ----eCCC----------CCHHHHHHHhccccCCCCcceE
Confidence 3332 233344699999999753 665
No 31
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5.7e-11 Score=112.09 Aligned_cols=155 Identities=26% Similarity=0.436 Sum_probs=114.7
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCC-----ccceeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGR-----THPVEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~-----~~pV~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~ 71 (251)
++||||++. ++...|..++-.+.+.-. .-.|+.+|......+ .++.+.. +.... ..+.++||....
T Consensus 209 llfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~----ll~~~-~~~~~IVF~~tk 283 (513)
T COG0513 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK----LLKDE-DEGRVIVFVRTK 283 (513)
T ss_pred EEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH----HHhcC-CCCeEEEEeCcH
Confidence 589999995 444578887777777722 266777777665544 4443332 22222 244699999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeC
Q psy2956 72 EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDP 151 (251)
Q Consensus 72 ~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~ 151 (251)
..++++++.|... ++++..+|+.|+++.+.+.+.....+ ..++.|+||+|...++||++.+||+
T Consensus 284 ~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g------~~~vLVaTDvaaRGiDi~~v~~Vin- 347 (513)
T COG0513 284 RLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDG------ELRVLVATDVAARGLDIPDVSHVIN- 347 (513)
T ss_pred HHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcC------CCCEEEEechhhccCCccccceeEE-
Confidence 9999998888753 68999999999999999998877766 6679999999999999999999998
Q ss_pred CcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 152 GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 152 G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
||.......++ +|.||+||.+ .|..
T Consensus 348 -------yD~p~~~e~yv----------HRiGRTgRaG~~G~a 373 (513)
T COG0513 348 -------YDLPLDPEDYV----------HRIGRTGRAGRKGVA 373 (513)
T ss_pred -------ccCCCCHHHhe----------eccCccccCCCCCeE
Confidence 55544433333 5888888865 4654
No 32
>PTZ00110 helicase; Provisional
Probab=99.18 E-value=1.4e-10 Score=110.32 Aligned_cols=104 Identities=15% Similarity=0.333 Sum_probs=83.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||+++.++++.+++.|.. ..+.+..+|+.++.+++...+.....+ ..+++++||+++..+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~---------~g~~~~~ihg~~~~~eR~~il~~F~~G------~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRL---------DGWPALCIHGDKKQEERTWVLNEFKTG------KSPIMIATDVASRGL 441 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHH---------cCCcEEEEECCCcHHHHHHHHHHHhcC------CCcEEEEcchhhcCC
Confidence 56899999999999999888864 267788999999999999888777666 567999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYI 197 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~ 197 (251)
+||++.+||+.++ . -+...-.||+||+||.+ +|.|+-++
T Consensus 442 Di~~v~~VI~~d~--------P----------~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 442 DVKDVKYVINFDF--------P----------NQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred CcccCCEEEEeCC--------C----------CCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999543 2 12233459999999975 58775543
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.18 E-value=1.9e-10 Score=109.92 Aligned_cols=156 Identities=16% Similarity=0.257 Sum_probs=106.9
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCCcc---ceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGRTH---PVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~~~---pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+... ....++.++..+.+..... .+..++......+.+.... .+... ...+.+|||+++...+
T Consensus 196 ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~----~ll~~-~~~~k~LVF~nt~~~a 270 (572)
T PRK04537 196 LLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLL----GLLSR-SEGARTMVFVNTKAFV 270 (572)
T ss_pred EEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHH----HHHhc-ccCCcEEEEeCCHHHH
Confidence 4799999854 3446666655555544332 2233232222233332222 22211 2256799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... .+.+..+|+.++..++.+.+.....+ ..+++|+||+++.++++|++.+||+.+.
T Consensus 271 e~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G------~~~VLVaTdv~arGIDip~V~~VInyd~- 334 (572)
T PRK04537 271 ERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKG------QLEILVATDVAARGLHIDGVKYVYNYDL- 334 (572)
T ss_pred HHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcC------CCeEEEEehhhhcCCCccCCCEEEEcCC-
Confidence 9999888642 57899999999999999888777665 6789999999999999999999998432
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
|.+...-.||+||+||.+ .|.|+
T Consensus 335 -----------------P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 335 -----------------PFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred -----------------CCCHHHHhhhhcccccCCCCceEE
Confidence 223334469999999965 47764
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.15 E-value=2.6e-10 Score=106.31 Aligned_cols=156 Identities=18% Similarity=0.246 Sum_probs=105.2
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+.||||+.. +....++.++..+.+..+. -.++.++......+..+ .+. .+.. +.....+|||.++..++
T Consensus 184 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~---~l~~-~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 184 LLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRE-LLS---QMIG-KGNWQQVLVFTRTKHGA 258 (456)
T ss_pred EEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHH-HHH---HHHH-cCCCCcEEEEcCcHHHH
Confidence 479999985 3455777766666665432 22333332222222211 111 1111 12245799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... .+.+..+|+.++.+++.+.+.....+ ..+++|+|++++..++||++.+||+.+.
T Consensus 259 ~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g------~~~iLVaTdv~~rGiDip~v~~VI~~~~- 322 (456)
T PRK10590 259 NHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSG------DIRVLVATDIAARGLDIEELPHVVNYEL- 322 (456)
T ss_pred HHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcC------CCcEEEEccHHhcCCCcccCCEEEEeCC-
Confidence 9999888642 57789999999999988887766655 5679999999999999999999998432
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
... ...-.||+||+||.. .|.|+
T Consensus 323 -------P~~----------~~~yvqR~GRaGR~g~~G~ai 346 (456)
T PRK10590 323 -------PNV----------PEDYVHRIGRTGRAAATGEAL 346 (456)
T ss_pred -------CCC----------HHHhhhhccccccCCCCeeEE
Confidence 222 223358999999965 46663
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.15 E-value=3.3e-10 Score=104.78 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=103.4
Q ss_pred CeeeeccChHH---HHHhc-CCCCeEEeCCCc---cceeeeeCCCCc-hhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATRRQHL---TRQYF-DNAPLMNVPGRT---HPVEIFYTPEPE-RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~~~~~---~~~yf-~~~pvi~i~g~~---~pV~~~y~~~~~-~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
+.||||++... |...+ .++..+.+.... ..+..+|..... ..... .+..+... ...+.+|||+++.+
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~----~l~~l~~~-~~~~~~lVF~~s~~ 256 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTA----LLCHLLKQ-PEVTRSIVFVRTRE 256 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHH----HHHHHHhc-CCCCeEEEEeCChH
Confidence 47999997543 33333 333334444321 223333332221 12222 22222222 23567999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
+++.+++.|.. .++.+..+|+.++..++...+.....+ ..+++++||+++.+++||++.+||+.+
T Consensus 257 ~~~~l~~~L~~---------~~~~~~~l~g~~~~~~R~~~l~~f~~G------~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 257 RVHELAGWLRK---------AGINCCYLEGEMVQAKRNEAIKRLTDG------RVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred HHHHHHHHHHh---------CCCCEEEecCCCCHHHHHHHHHHHhCC------CCcEEEEccccccCccCCCCCEEEEEC
Confidence 99999998875 267899999999999998888776666 567999999999999999999999843
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
. |.+...-.||.||+||.+ .|.+
T Consensus 322 ~------------------p~s~~~yiqr~GR~gR~g~~g~a 345 (434)
T PRK11192 322 M------------------PRSADTYLHRIGRTGRAGRKGTA 345 (434)
T ss_pred C------------------CCCHHHHhhcccccccCCCCceE
Confidence 2 223334469999999964 4655
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.15 E-value=4.1e-10 Score=105.44 Aligned_cols=155 Identities=20% Similarity=0.331 Sum_probs=105.9
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+++|||+..+ ....|..++.++.+.... ..++.++......+....+. ++.. ....+.+|||+++.+++
T Consensus 274 i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~----~ll~-~~~~~~~IVF~~s~~~~ 348 (475)
T PRK01297 274 LLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLY----NLVT-QNPWERVMVFANRKDEV 348 (475)
T ss_pred EEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHH----HHHH-hcCCCeEEEEeCCHHHH
Confidence 4689998743 334566565556555432 22333332222223222222 2211 12245799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+.+.|... ++++..+|+.++.+++...+.....+ ..+++++||+++.+++|+++.+||+.|+
T Consensus 349 ~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G------~~~vLvaT~~l~~GIDi~~v~~VI~~~~- 412 (475)
T PRK01297 349 RRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREG------KIRVLVATDVAGRGIHIDGISHVINFTL- 412 (475)
T ss_pred HHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCC------CCcEEEEccccccCCcccCCCEEEEeCC-
Confidence 9988877532 57788899999999998888777666 5679999999999999999999999643
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
|-+..+-.||+||+||.+ .|.+
T Consensus 413 -----------------P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 413 -----------------PEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred -----------------CCCHHHHHHhhCccCCCCCCceE
Confidence 334456679999999976 3655
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.12 E-value=5.5e-10 Score=102.03 Aligned_cols=158 Identities=13% Similarity=0.263 Sum_probs=106.3
Q ss_pred CeeeeccChHHH---HHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQHLT---RQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~~~---~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+.+|||+..+.. ..|+.++..+.+.... ..++.+|......++....+ ..+.... ..+.+|||.++.+++
T Consensus 205 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~-~~~~~ivF~~t~~~~ 280 (401)
T PTZ00424 205 ALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTL---CDLYETL-TITQAIIYCNTRRKV 280 (401)
T ss_pred EEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHH---HHHHHhc-CCCeEEEEecCcHHH
Confidence 478999985443 3555554444454432 22344444333323222222 2222111 245699999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... .+.+..+|+.++.+++...++....+ ..+++++|++++.++++|++.+||+-+.
T Consensus 281 ~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g------~~~vLvaT~~l~~GiDip~v~~VI~~~~- 344 (401)
T PTZ00424 281 DYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSG------STRVLITTDLLARGIDVQQVSLVINYDL- 344 (401)
T ss_pred HHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcC------CCCEEEEcccccCCcCcccCCEEEEECC-
Confidence 9988887642 57889999999999999888776666 5789999999999999999999998432
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|.+...-.||+||+||.+ +|.|+-
T Consensus 345 -----------------p~s~~~y~qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 345 -----------------PASPENYIHRIGRSGRFGRKGVAIN 369 (401)
T ss_pred -----------------CCCHHHEeecccccccCCCCceEEE
Confidence 223333458999999965 687754
No 38
>KOG0331|consensus
Probab=99.11 E-value=6.6e-10 Score=103.09 Aligned_cols=160 Identities=19% Similarity=0.345 Sum_probs=113.7
Q ss_pred CeeeeccChHHHH---HhcCCCCeEEeCCCc-----cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATRRQHLTR---QYFDNAPLMNVPGRT-----HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~~pvi~i~g~~-----~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
+++|||...+.+. +|.++.--+.+.+.. +.+...-.......... .+..++..+. .+.+|-++||.....
T Consensus 275 lm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~-~l~~lL~~~~-~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 275 LMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR-KLGKLLEDIS-SDSEGKVIIFCETKR 352 (519)
T ss_pred EEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH-HHHHHHHHHh-ccCCCcEEEEecchh
Confidence 4789999955443 788866556666542 33332211112111111 2222333333 345788999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
+++++...+.. ..+....+|+.++++++...++..+.+ ...++||||+|..+|+||++.|||+
T Consensus 353 ~~~~l~~~l~~---------~~~~a~~iHGd~sQ~eR~~~L~~FreG------~~~vLVATdVAaRGLDi~dV~lVIn-- 415 (519)
T KOG0331|consen 353 TCDELARNLRR---------KGWPAVAIHGDKSQSERDWVLKGFREG------KSPVLVATDVAARGLDVPDVDLVIN-- 415 (519)
T ss_pred hHHHHHHHHHh---------cCcceeeecccccHHHHHHHHHhcccC------CcceEEEcccccccCCCccccEEEe--
Confidence 99998888764 248899999999999999999888877 6779999999999999999999999
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|+...+...++ +|.||+||.. .|..|-
T Consensus 416 ------ydfP~~vEdYV----------HRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 416 ------YDFPNNVEDYV----------HRIGRTGRAGKKGTAIT 443 (519)
T ss_pred ------CCCCCCHHHHH----------hhcCccccCCCCceEEE
Confidence 67666666665 7999999933 465543
No 39
>KOG0345|consensus
Probab=99.10 E-value=2.8e-10 Score=102.93 Aligned_cols=155 Identities=18% Similarity=0.312 Sum_probs=113.6
Q ss_pred eeeeccC---hHHHHHhcCCCCeEEeCCCc---cc--eeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 2 QIFATRR---QHLTRQYFDNAPLMNVPGRT---HP--VEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 2 ~~sAT~~---~~~~~~yf~~~pvi~i~g~~---~p--V~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+||||.. .+++...+.|+--+.|.... -| ...+|........+..+++.+.+. ..+-++||+|+...
T Consensus 193 LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~-----~~kK~iVFF~TCas 267 (567)
T KOG0345|consen 193 LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNN-----KDKKCIVFFPTCAS 267 (567)
T ss_pred cccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcc-----ccccEEEEecCcch
Confidence 6999998 55555666676667776544 56 677888776666666665554442 24569999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++.....+...+ +...++.+|+.+....+.+.|...... ...+.++||+|..+++|||+.+|+.
T Consensus 268 VeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~------~~~vl~~TDVaARGlDip~iD~VvQ--- 331 (567)
T KOG0345|consen 268 VEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKL------SNGVLFCTDVAARGLDIPGIDLVVQ--- 331 (567)
T ss_pred HHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhc------cCceEEeehhhhccCCCCCceEEEe---
Confidence 999888776542 367899999999998777776655443 4558999999999999999999987
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGK 192 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~ 192 (251)
|||..+.+... +|+||+||.+ .|.
T Consensus 332 -----~DpP~~~~~Fv----------HR~GRTaR~gr~G~ 356 (567)
T KOG0345|consen 332 -----FDPPKDPSSFV----------HRCGRTARAGREGN 356 (567)
T ss_pred -----cCCCCChhHHH----------hhcchhhhccCccc
Confidence 77655444333 7888887755 354
No 40
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.10 E-value=7e-10 Score=104.97 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=104.1
Q ss_pred CeeeeccCh--HHHHHhcCCCC-eEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQ--HLTRQYFDNAP-LMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~--~~~~~yf~~~p-vi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+.. +.+.+.+...+ .+.+.... -.+..++......+........+ ..+ ....+.+|||+++....
T Consensus 304 l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l-~~~--~~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 304 LLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDIL-KSK--QHFKPPAVVFVSSRLGA 380 (518)
T ss_pred EEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHH-Hhh--cccCCCEEEEcCCchhH
Confidence 479999984 34555554444 45544322 12232222222222222222221 111 11245699999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+.+.|... .++++..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||.-
T Consensus 381 ~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G------~~~ILVaTdvl~rGiDip~v~~VI~~--- 443 (518)
T PLN00206 381 DLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVG------EVPVIVATGVLGRGVDLLRVRQVIIF--- 443 (518)
T ss_pred HHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCC------CCCEEEEecHhhccCCcccCCEEEEe---
Confidence 8887776531 367889999999999998888777666 56799999999999999999999984
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
+. |.+...-.||+||+||.+ +|.++
T Consensus 444 -----d~----------P~s~~~yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 444 -----DM----------PNTIKEYIHQIGRASRMGEKGTAI 469 (518)
T ss_pred -----CC----------CCCHHHHHHhccccccCCCCeEEE
Confidence 32 223344469999999976 47664
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=1e-09 Score=102.65 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=103.4
Q ss_pred CeeeeccChHHHH---HhcC-CCCeEEeCCCccceeeeeC-CCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRRQHLTR---QYFD-NAPLMNVPGRTHPVEIFYT-PEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~-~~pvi~i~g~~~pV~~~y~-~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
+.+|||++.+... +.++ ..|.+...+...|- ++|. .....+.++.....+...+ .....|||.++.++++
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~~v~~~~~~~~~~l~~~l~~~~----~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYYEVRRKTPKILEDLLRFIRKEF----KGKSGIIYCPSRKKSE 240 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEEEEEeCCccHHHHHHHHHHHhc----CCCceEEEECcHHHHH
Confidence 4689999865433 3332 23444333322221 1221 1111133333333332211 1334699999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
.+.+.|... ++.+..+|+.|+.+++..++.....+ ..+++++|+.++.++++|++.+||..+..
T Consensus 241 ~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g------~~~vLVaT~~~~~GID~p~V~~VI~~~~P- 304 (470)
T TIGR00614 241 QVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRD------EIQVVVATVAFGMGINKPDVRFVIHYSLP- 304 (470)
T ss_pred HHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcC------CCcEEEEechhhccCCcccceEEEEeCCC-
Confidence 999988742 67889999999999998887666655 56799999999999999999999985431
Q ss_pred ceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
-+...-.||+||+||.+ +|.|+-+
T Consensus 305 -----------------~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 305 -----------------KSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred -----------------CCHHHHHhhhcCcCCCCCCceEEEE
Confidence 12334469999999976 5777543
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.06 E-value=1.1e-09 Score=105.42 Aligned_cols=156 Identities=22% Similarity=0.346 Sum_probs=104.5
Q ss_pred CeeeeccChHHHH---HhcC-CCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTR---QYFD-NAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~-~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
+.+|||.+..... ..++ ..|.+.+.+...| .+.|.-....+.+..+...+ . ....+..+||.++.+++++
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~~~l~~~l---~--~~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPLDQLMRYV---Q--EQRGKSGIIYCNSRAKVED 251 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchHHHHHHHH---H--hcCCCCEEEEECcHHHHHH
Confidence 4689999865433 2222 3455555543322 12222111112222222211 1 1125678999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccc
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQ 156 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~ 156 (251)
+++.|... ++++..+|+.|+.+++...++....+ ..+++++|+.++.++++|++.+||+-+.
T Consensus 252 la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g------~~~VLVaT~a~~~GIDip~V~~VI~~d~--- 313 (607)
T PRK11057 252 TAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRD------DLQIVVATVAFGMGINKPNVRFVVHFDI--- 313 (607)
T ss_pred HHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCC------CCCEEEEechhhccCCCCCcCEEEEeCC---
Confidence 99988752 67899999999999998888776555 5679999999999999999999998432
Q ss_pred eeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 157 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 157 ~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|-+..+-.||+||+||.+ +|.|+-
T Consensus 314 ---------------P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 314 ---------------PRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred ---------------CCCHHHHHHHhhhccCCCCCceEEE
Confidence 223445579999999976 466643
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.98 E-value=3.8e-09 Score=105.41 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=108.0
Q ss_pred CeeeeccChHHHHH-hcC--CCCeEEeCC-CccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTRQ-YFD--NAPLMNVPG-RTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~~-yf~--~~pvi~i~g-~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
+.||||.....+.. .++ +..+|..+. ...||+.++.+... ..+..+ +.... . ..|.+++|.|..++++.
T Consensus 603 L~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~~---i~~el-~--~g~qv~if~n~i~~~e~ 675 (926)
T TIGR00580 603 LTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVREA---IRREL-L--RGGQVFYVHNRIESIEK 675 (926)
T ss_pred EEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHHH---HHHHH-H--cCCeEEEEECCcHHHHH
Confidence 47999987655542 222 344555543 34788887765322 111111 11111 1 25789999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccc
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQ 156 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~ 156 (251)
+++.|...+ +++++..+|+.|+.+++.+.+.....+ ..+++|||+++|.+++||++.+||.-...
T Consensus 676 l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~G------k~~ILVaT~iie~GIDIp~v~~VIi~~a~-- 740 (926)
T TIGR00580 676 LATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKG------EFQVLVCTTIIETGIDIPNANTIIIERAD-- 740 (926)
T ss_pred HHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcC------CCCEEEECChhhcccccccCCEEEEecCC--
Confidence 988887532 478999999999999999888877766 56799999999999999999888852111
Q ss_pred eeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 157 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 157 ~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
..+.. +--||+||+||.. .|.||=
T Consensus 741 -----~~gls----------~l~Qr~GRvGR~g~~g~ail 765 (926)
T TIGR00580 741 -----KFGLA----------QLYQLRGRVGRSKKKAYAYL 765 (926)
T ss_pred -----CCCHH----------HHHHHhcCCCCCCCCeEEEE
Confidence 11111 2249999999965 577864
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.95 E-value=5.3e-09 Score=106.46 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=106.3
Q ss_pred CeeeeccChHHHH---HhcCCCCeEEeCCC-ccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTR---QYFDNAPLMNVPGR-THPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~~pvi~i~g~-~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
+.||||.....+. .++.++.+|..+.. ..+|+.++.........++.. .++. ..|.+++|++..+.++.
T Consensus 752 Ll~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il---~el~----r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAIL---REIL----RGGQVYYLYNDVENIQK 824 (1147)
T ss_pred EEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHH---HHHh----cCCeEEEEECCHHHHHH
Confidence 4799997654433 34445666766543 367776654321111111111 1121 15789999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccc
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQ 156 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~ 156 (251)
+.+.|.+.+ +++++..+|+.|+.+++.+.+.....+ ..+++|||++++.+++||++.+||.-.-.
T Consensus 825 la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~G------k~~VLVaTdIierGIDIP~v~~VIi~~ad-- 889 (1147)
T PRK10689 825 AAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQ------RFNVLVCTTIIETGIDIPTANTIIIERAD-- 889 (1147)
T ss_pred HHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhc------CCCEEEECchhhcccccccCCEEEEecCC--
Confidence 988887542 467899999999999999888776666 56799999999999999999998842100
Q ss_pred eeeCCccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 157 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 157 ~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
.| +. ++--||+||+||.. .|.||
T Consensus 890 -~f----gl----------aq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 890 -HF----GL----------AQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred -CC----CH----------HHHHHHhhccCCCCCceEEE
Confidence 01 11 12359999999965 47775
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.95 E-value=7.6e-09 Score=101.41 Aligned_cols=156 Identities=20% Similarity=0.259 Sum_probs=93.4
Q ss_pred CeeeeccChHHH---HHhcCCCCeEEeCCCccce--eeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRRQHLT---RQYFDNAPLMNVPGRTHPV--EIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~~~~~---~~yf~~~pvi~i~g~~~pV--~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
|+||||++.+.. ..+..+...+.+..+.-.. -.+|.+......+...+..+..+.. +..+.+|||+++.++++
T Consensus 209 LLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~--e~g~~vLVF~NTv~~Aq 286 (844)
T TIGR02621 209 VELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMK--DSGGAILVFCRTVKHVR 286 (844)
T ss_pred EEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHh--hCCCcEEEEECCHHHHH
Confidence 579999985432 2344343334443322121 1223333333334333333333332 23678999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHH-----HhcccCCC----CC-CCCCccceEEEecCcccceeeecce
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQ-----RIFEAAPA----NK-PNGGIGRKVVVSTNIAETSLTIDGV 145 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~-----~~f~~~p~----~~-~~g~~~rkiivst~iaetsltI~g~ 145 (251)
.+++.|.+. .+ ..+|+.|...++. +.+..... +. .....+.+++|+|+++|.+++|+.+
T Consensus 287 ~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d 355 (844)
T TIGR02621 287 KVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISAD 355 (844)
T ss_pred HHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcc
Confidence 999998742 22 8999999998877 44433221 10 0001135789999999999999986
Q ss_pred EEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 146 VFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 146 ~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
.+|.+. .|+ .+-.||.||+||.+.
T Consensus 356 ~VI~d~-------------------aP~--esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 356 HLVCDL-------------------APF--ESMQQRFGRVNRFGE 379 (844)
T ss_pred eEEECC-------------------CCH--HHHHHHhcccCCCCC
Confidence 555441 111 345799999999754
No 46
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.95 E-value=6.4e-09 Score=93.70 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHh----cccCCCCCCCCCccceEEEecCcc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRI----FEAAPANKPNGGIGRKVVVSTNIA 136 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~----f~~~p~~~~~g~~~rkiivst~ia 136 (251)
++.+|||+++.++++++++.|.+.. ++..+..+|+.++..++.+. +.....+ ..+++++|+++
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~------~~~ilvaT~~~ 288 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKN------EKFVIVATQVI 288 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCC------CCeEEEECcch
Confidence 5789999999999999999887531 24579999999998777543 4443333 56799999999
Q ss_pred cceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 137 ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 137 etsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
+.+++|+.+..+.++ .+..+-.||+||+||.+.
T Consensus 289 ~~GiDi~~~~vi~~~---------------------~~~~~~iqr~GR~gR~g~ 321 (358)
T TIGR01587 289 EASLDISADVMITEL---------------------APIDSLIQRLGRLHRYGR 321 (358)
T ss_pred hceeccCCCEEEEcC---------------------CCHHHHHHHhccccCCCC
Confidence 999999744333221 112345799999999754
No 47
>PRK02362 ski2-like helicase; Provisional
Probab=98.91 E-value=1.3e-08 Score=100.16 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=87.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcC----------------CCCC-----------CeEEEEccCCCChhhHHHhc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLG----------------PEAG-----------ELKCIPLYSTLPPNLQQRIF 113 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~----------------~~~~-----------~l~vi~lsatl~~~~~~~~f 113 (251)
.+.+|||+++..+++.+++.|...+.... ...+ ...+-..|+.|+.+++..+.
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 67899999999999998888765432100 0000 12477889999999999888
Q ss_pred ccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 114 EAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 114 ~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
.....+ ..+++++|+.++.++.+|+..+||.. ...|++..+ ..|++...-.||+|||||.+-
T Consensus 323 ~~Fr~G------~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~ 384 (737)
T PRK02362 323 DAFRDR------LIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGL 384 (737)
T ss_pred HHHHcC------CCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCC
Confidence 777666 67899999999999999999999974 234655322 257888889999999999763
No 48
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.90 E-value=2.2e-08 Score=98.44 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=82.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+..|||.++..+.+.+.+.|...+...... -..++..+|+.+..+++.+.......+ ..+++++||.+|.++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G------~i~vLVaTd~lerGI 343 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDG------ELLGVATTNALELGV 343 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcC------CceEEEECchHhccC
Confidence 4679999999999999999887654332211 135788899999999999887766666 567999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
+|+++.+||.-|+ |-+..+-.||+||+||.+.
T Consensus 344 DI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~ 375 (742)
T TIGR03817 344 DISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQ 375 (742)
T ss_pred CcccccEEEEeCC------------------CCCHHHHHHhccccCCCCC
Confidence 9999999999653 2233455699999999754
No 49
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.89 E-value=3.7e-08 Score=89.11 Aligned_cols=130 Identities=12% Similarity=0.165 Sum_probs=85.9
Q ss_pred CeeeeccChHHHH---Hh-cCCCCeEEeCCC--cc--------------------ceeeeeCCCCc--hhHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTR---QY-FDNAPLMNVPGR--TH--------------------PVEIFYTPEPE--RDYLEAAIRTVV 52 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~y-f~~~pvi~i~g~--~~--------------------pV~~~y~~~~~--~~~~~~~~~~v~ 52 (251)
+.+|||++..... +. +-+.|++.++|+ .| ++++.|.+... .+.+....+.+.
T Consensus 185 i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~ 264 (357)
T TIGR03158 185 VFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVI 264 (357)
T ss_pred EEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHH
Confidence 4799999865433 32 124688899998 22 45655544221 122222223333
Q ss_pred HHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEe
Q psy2956 53 QIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS 132 (251)
Q Consensus 53 ~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivs 132 (251)
+.... ...+.+|||+++..+++++++.|.+. ..++.+..+|+.++.+.+.+.. ...++++
T Consensus 265 ~~~~~-~~~~k~LIf~nt~~~~~~l~~~L~~~-------~~~~~~~~l~g~~~~~~R~~~~------------~~~iLVa 324 (357)
T TIGR03158 265 ERFRQ-LPGERGAIILDSLDEVNRLSDLLQQQ-------GLGDDIGRITGFAPKKDRERAM------------QFDILLG 324 (357)
T ss_pred HHHhc-cCCCeEEEEECCHHHHHHHHHHHhhh-------CCCceEEeeecCCCHHHHHHhc------------cCCEEEE
Confidence 32211 22567999999999999999988752 1246778899999988876543 2459999
Q ss_pred cCcccceeeecceEEEEe
Q psy2956 133 TNIAETSLTIDGVVFVID 150 (251)
Q Consensus 133 t~iaetsltI~g~~lVfd 150 (251)
|++++.+++|+++.+|++
T Consensus 325 Tdv~~rGiDi~~~~vi~~ 342 (357)
T TIGR03158 325 TSTVDVGVDFKRDWLIFS 342 (357)
T ss_pred ecHHhcccCCCCceEEEC
Confidence 999999999998855554
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.88 E-value=2.1e-08 Score=97.80 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=103.0
Q ss_pred CeeeeccChHHHH-HhcCCCCeEEe---CCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH---
Q psy2956 1 MQIFATRRQHLTR-QYFDNAPLMNV---PGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE--- 73 (251)
Q Consensus 1 ~~~sAT~~~~~~~-~yf~~~pvi~i---~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e--- 73 (251)
+.||||.....+. .++++..+..+ |....|+++++......+.+ ++.+.+.. ...+.++||.|..++
T Consensus 413 L~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~---~~~i~~~~---~~g~q~~v~~~~ie~s~~ 486 (681)
T PRK10917 413 LVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEV---YERIREEI---AKGRQAYVVCPLIEESEK 486 (681)
T ss_pred EEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHH---HHHHHHHH---HcCCcEEEEEcccccccc
Confidence 4799997655443 44554433333 33235788777665443322 22222221 124579999996543
Q ss_pred -----HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEE
Q psy2956 74 -----IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFV 148 (251)
Q Consensus 74 -----i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lV 148 (251)
.++.++.|... .+++++..+|+.|+.+++...+.....+ ..+++++|++++.++++|++.+|
T Consensus 487 l~~~~~~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g------~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 487 LDLQSAEETYEELQEA-------FPELRVGLLHGRMKPAEKDAVMAAFKAG------EIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred hhHHHHHHHHHHHHHH-------CCCCcEEEEeCCCCHHHHHHHHHHHHcC------CCCEEEECcceeeCcccCCCcEE
Confidence 33344444332 2358899999999999999988777666 56899999999999999999998
Q ss_pred EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
|.-+.. +.+ -+.-.||.||+||.+ +|.|+-+
T Consensus 554 Ii~~~~-------r~g----------ls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 554 VIENAE-------RFG----------LAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred EEeCCC-------CCC----------HHHHHHHhhcccCCCCceEEEEE
Confidence 873221 111 123459999999976 6888643
No 51
>KOG0333|consensus
Probab=98.87 E-value=1.2e-08 Score=93.70 Aligned_cols=150 Identities=21% Similarity=0.373 Sum_probs=106.8
Q ss_pred CeeeeccC---hHHHHHhcCCCCeEEeC--CCccc-ee--eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATRR---QHLTRQYFDNAPLMNVP--GRTHP-VE--IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~~---~~~~~~yf~~~pvi~i~--g~~~p-V~--~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
++|+|||. ..+...||.++-++.|. |+..| |+ +++... ......+...+ +-.. .--|+||.+...
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e--d~k~kkL~eil-~~~~----~ppiIIFvN~kk 528 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE--DEKRKKLIEIL-ESNF----DPPIIIFVNTKK 528 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc--hHHHHHHHHHH-HhCC----CCCEEEEEechh
Confidence 47999999 66777999998888877 44433 23 333332 22233333222 2221 234999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
-++.+.+.|.+. .+++..+|+.-..++++..+.....+ .-.|.||||+|...++||++-+|++--
T Consensus 529 ~~d~lAk~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~------t~dIlVaTDvAgRGIDIpnVSlVinyd 593 (673)
T KOG0333|consen 529 GADALAKILEKA---------GYKVTTLHGGKSQEQRENALADFREG------TGDILVATDVAGRGIDIPNVSLVINYD 593 (673)
T ss_pred hHHHHHHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhc------CCCEEEEecccccCCCCCccceeeecc
Confidence 999988888764 69999999999999998887776655 456999999999999999999999954
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
+.+. +..+ .+|.||+||.+.
T Consensus 594 maks--------ieDY----------tHRIGRTgRAGk 613 (673)
T KOG0333|consen 594 MAKS--------IEDY----------THRIGRTGRAGK 613 (673)
T ss_pred hhhh--------HHHH----------HHHhcccccccc
Confidence 4321 1111 369999988764
No 52
>PRK00254 ski2-like helicase; Provisional
Probab=98.86 E-value=2.7e-08 Score=97.77 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=104.1
Q ss_pred Ceeeecc-ChHHHHHhcCCCCeEEeCCCcccee--eeeC-----CCCch-hHHHHHHHHHHHHhhccccCCCEEEecCCH
Q psy2956 1 MQIFATR-RQHLTRQYFDNAPLMNVPGRTHPVE--IFYT-----PEPER-DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71 (251)
Q Consensus 1 ~~~sAT~-~~~~~~~yf~~~pvi~i~g~~~pV~--~~y~-----~~~~~-~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~ 71 (251)
+.+|||+ |.+.+.+|++. +.+....|..|.. +++. +.... .+.......+.+... ..+.+|||.++.
T Consensus 173 I~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~vLVF~~sr 248 (720)
T PRK00254 173 LGLSATVGNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK---KGKGALVFVNTR 248 (720)
T ss_pred EEEEccCCCHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH---hCCCEEEEEcCh
Confidence 4689999 68888998864 3333334444432 2221 11111 111222222222221 256799999999
Q ss_pred HHHHHHHHHHHHhhhhcCC------------------CCC------CeEEEEccCCCChhhHHHhcccCCCCCCCCCccc
Q psy2956 72 EEIEEACKRIKKEIDNLGP------------------EAG------ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGR 127 (251)
Q Consensus 72 ~ei~~~~~~L~~~~~~l~~------------------~~~------~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~r 127 (251)
.+.+.+...|...+..... ... ...+...|+.|+.+++..+.+....+ ..
T Consensus 249 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G------~i 322 (720)
T PRK00254 249 RSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREG------LI 322 (720)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC------CC
Confidence 9988777666433211100 000 12488899999999999887777666 67
Q ss_pred eEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 128 KVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 128 kiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
++++||+.++.++.+|+...||..+. .|+. .+ ..++..+.-.||+|||||.+
T Consensus 323 ~VLvaT~tLa~Gvnipa~~vVI~~~~----~~~~-~~-----~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 323 KVITATPTLSAGINLPAFRVIIRDTK----RYSN-FG-----WEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred eEEEeCcHHhhhcCCCceEEEECCce----EcCC-CC-----ceeCCHHHHHHhhhccCCCC
Confidence 89999999999999999999996442 2321 11 12223345689999999964
No 53
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.85 E-value=1.6e-08 Score=97.29 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=80.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+..+||.++..+++++.+.|.. ..+.+...|+.|+.+++.........+ ..+++++|+..+.++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~---------~g~~~~~~H~~l~~~~R~~i~~~F~~g------~~~vlVaT~a~~~GI 288 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLES---------QGISALAYHAGLSNKVRAENQEDFLYD------DVKVMVATNAFGMGI 288 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHh---------CCCCEEEEECCCCHHHHHHHHHHHHcC------CCcEEEEechhhccC
Confidence 45689999999999999998864 257788999999999888776655444 457999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
++|++.+||+.+. |-+..+-.||+||+||.+ +|.|+-
T Consensus 289 D~p~v~~VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 289 DKPNVRFVIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred cCCCCCEEEEcCC------------------CCCHHHHhhhhccccCCCCCceEEE
Confidence 9999999998543 122234459999999966 577753
No 54
>KOG0328|consensus
Probab=98.85 E-value=2.2e-08 Score=85.73 Aligned_cols=130 Identities=9% Similarity=0.263 Sum_probs=96.8
Q ss_pred CeeeeccChHHHH---HhcCCCCeEEeCCC--c-cceeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQHLTR---QYFDNAPLMNVPGR--T-HPVEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~~pvi~i~g~--~-~pV~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+++|||+..+.++ .|..++--|-+.-. + -.++.||.....++ ..+..+++--.+.. -...+|.+...-
T Consensus 204 v~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtI-----tQavIFcnTk~k 278 (400)
T KOG0328|consen 204 VLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI-----TQAVIFCNTKRK 278 (400)
T ss_pred EEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhheh-----heEEEEecccch
Confidence 4799999977766 55555444555532 2 23667776654433 34444332222222 248899999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEe
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVID 150 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd 150 (251)
++-+.+++++. ++.|-.||+.|+.+++.++.+....+ .-++.++||+=.+.++++.+-+||+
T Consensus 279 VdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg------~SrvLitTDVwaRGiDv~qVslviN 340 (400)
T KOG0328|consen 279 VDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSG------KSRVLITTDVWARGIDVQQVSLVIN 340 (400)
T ss_pred hhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcC------CceEEEEechhhccCCcceeEEEEe
Confidence 99999988763 78899999999999999999988877 6789999999999999999999999
No 55
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.84 E-value=1.6e-08 Score=101.14 Aligned_cols=104 Identities=17% Similarity=0.280 Sum_probs=82.6
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+..+||..+..+++.+.+.|... ++++...||.|+.+++.........+ .-+++++|+....+|
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~G------ei~VLVATdAFGMGI 744 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKD------EINIICATVAFGMGI 744 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcC------CCcEEEEechhhcCC
Confidence 456789999999999999888742 68899999999999988887666555 557999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYI 197 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~ 197 (251)
++|++.+||.-++- .... .-.||+|||||.+ +|.|.=+|
T Consensus 745 DkPDVR~VIHydlP--------kSiE----------sYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 745 NKPDVRFVIHHSLP--------KSIE----------GYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CccCCcEEEEcCCC--------CCHH----------HHHhhhcccCCCCCCceEEEEe
Confidence 99999999995442 2222 2349999999966 67775433
No 56
>KOG0330|consensus
Probab=98.84 E-value=9.1e-09 Score=91.42 Aligned_cols=154 Identities=21% Similarity=0.290 Sum_probs=103.8
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++|||||-. ++...-..++--+.++.+- -.++.+|+-.+..+.-...+..+. +...+.++||.......
T Consensus 239 ~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~-----e~~g~s~iVF~~t~~tt 313 (476)
T KOG0330|consen 239 FLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLN-----ELAGNSVIVFCNTCNTT 313 (476)
T ss_pred EEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHH-----hhcCCcEEEEEeccchH
Confidence 379999983 2222334444446666543 333455655444332222222221 22357899999998877
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+.-.|.. -.+..+++|+.|+++++--.|+....+ .|.+.++||+|.+.++||++.+||+
T Consensus 314 ~~la~~L~~---------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~------~r~iLv~TDVaSRGLDip~Vd~VVN---- 374 (476)
T KOG0330|consen 314 RFLALLLRN---------LGFQAIPLHGQMSQSKRLGALNKFKAG------ARSILVCTDVASRGLDIPHVDVVVN---- 374 (476)
T ss_pred HHHHHHHHh---------cCcceecccchhhHHHHHHHHHHHhcc------CCcEEEecchhcccCCCCCceEEEe----
Confidence 765554443 278899999999999999888887776 7889999999999999999999999
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGK 192 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~ 192 (251)
||- |.+...-.+|+||+||.+ +|+
T Consensus 375 ----yDi----------P~~skDYIHRvGRtaRaGrsG~ 399 (476)
T KOG0330|consen 375 ----YDI----------PTHSKDYIHRVGRTARAGRSGK 399 (476)
T ss_pred ----cCC----------CCcHHHHHHHcccccccCCCcc
Confidence 443 334444457888877765 454
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.78 E-value=4.4e-08 Score=94.86 Aligned_cols=160 Identities=14% Similarity=0.215 Sum_probs=101.5
Q ss_pred CeeeeccChHHHH-HhcCCCC--eE-EeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH---
Q psy2956 1 MQIFATRRQHLTR-QYFDNAP--LM-NVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE--- 73 (251)
Q Consensus 1 ~~~sAT~~~~~~~-~yf~~~p--vi-~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e--- 73 (251)
+.||||.....+. ..++... ++ ..|....|+..++...... +.++..+.+.. ...+.++||.|..++
T Consensus 390 l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l---~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 390 LVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI---AKGRQAYVVYPLIEESEK 463 (630)
T ss_pred EEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH---HhCCcEEEEEcccccccc
Confidence 4799997644443 3334322 22 2333346888777654332 22222222211 124579999987543
Q ss_pred -----HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEE
Q psy2956 74 -----IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFV 148 (251)
Q Consensus 74 -----i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lV 148 (251)
.+++++.|... .+++++..+|+.|+.+++.+.++....+ ..+++|+|+++|.++++|++.+|
T Consensus 464 ~~~~~a~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g------~~~ILVaT~vie~GvDiP~v~~V 530 (630)
T TIGR00643 464 LDLKAAEALYERLKKA-------FPKYNVGLLHGRMKSDEKEAVMEEFREG------EVDILVATTVIEVGVDVPNATVM 530 (630)
T ss_pred chHHHHHHHHHHHHhh-------CCCCcEEEEeCCCCHHHHHHHHHHHHcC------CCCEEEECceeecCcccCCCcEE
Confidence 33333434321 2578899999999999999888877766 67899999999999999999988
Q ss_pred EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
|.- +... ..-+.-.||+||+||.+ +|.|+-+
T Consensus 531 Ii~--------~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 531 VIE--------DAER---------FGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred EEe--------CCCc---------CCHHHHHHHhhhcccCCCCcEEEEE
Confidence 863 2211 01234569999999965 6888643
No 58
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.74 E-value=7e-08 Score=96.58 Aligned_cols=101 Identities=26% Similarity=0.267 Sum_probs=79.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||.++....+.+++.|...... ......+...|+.|+.+++....+....+ ..++++||+.++.++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~---~~~~~~i~~hHg~ls~~~R~~ve~~fk~G------~i~vLVaTs~Le~GI 354 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPE---EYDEDNIGAHHSSLSREVRLEVEEKLKRG------ELKVVVSSTSLELGI 354 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchh---hccccceeeeeCCCCHHHHHHHHHHHHcC------CCeEEEECChHHhcC
Confidence 467999999999999999888764321 11246788999999999998887766655 568999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCC
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 188 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~ 188 (251)
+||++.+||.-|. |-+.+.-.||+||+||.
T Consensus 355 Dip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 355 DIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHR 384 (876)
T ss_pred CCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCC
Confidence 9999999997432 22445667999999985
No 59
>KOG0342|consensus
Probab=98.68 E-value=6.9e-08 Score=88.04 Aligned_cols=156 Identities=18% Similarity=0.271 Sum_probs=102.3
Q ss_pred CeeeeccChHH---HHHhcC-CCCeEEeCCCc-----cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCH
Q psy2956 1 MQIFATRRQHL---TRQYFD-NAPLMNVPGRT-----HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71 (251)
Q Consensus 1 ~~~sAT~~~~~---~~~yf~-~~pvi~i~g~~-----~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~ 71 (251)
++||||...+. ..--+. ++-.+.+.... --++.-|.-.+....+..+...+ .-|.. ..-|+||+|+.
T Consensus 265 ~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~L-Kk~~~---~~KiiVF~sT~ 340 (543)
T KOG0342|consen 265 LLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFL-KKNIK---RYKIIVFFSTC 340 (543)
T ss_pred eEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHH-HHhcC---CceEEEEechh
Confidence 58999998432 222222 23345554332 22344455444444444444332 22322 25699999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeC
Q psy2956 72 EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDP 151 (251)
Q Consensus 72 ~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~ 151 (251)
....-.++.|... +|-+..+|+.+++..+...|...-.. ..-|.++||++.+.+++|++..|+-
T Consensus 341 ~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~ka------esgIL~cTDVaARGlD~P~V~~VvQ- 404 (543)
T KOG0342|consen 341 MSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKA------ESGILVCTDVAARGLDIPDVDWVVQ- 404 (543)
T ss_pred hHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhc------ccceEEecchhhccCCCCCceEEEE-
Confidence 9999999988742 78899999999999888776554433 4558899999999999999999998
Q ss_pred CcccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Ccc
Q psy2956 152 GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKC 193 (251)
Q Consensus 152 G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c 193 (251)
|++..+...+ .+|.||+||.+. |+.
T Consensus 405 -------~~~P~d~~~Y----------IHRvGRTaR~gk~G~a 430 (543)
T KOG0342|consen 405 -------YDPPSDPEQY----------IHRVGRTAREGKEGKA 430 (543)
T ss_pred -------eCCCCCHHHH----------HHHhccccccCCCceE
Confidence 4444333222 369999999543 443
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.66 E-value=3.8e-07 Score=94.42 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=82.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcC------------------------CCCCCeEEEEccCCCChhhHHHhcccC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLG------------------------PEAGELKCIPLYSTLPPNLQQRIFEAA 116 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~------------------------~~~~~l~vi~lsatl~~~~~~~~f~~~ 116 (251)
.+..|||.++....+.++..|.+...... ...+...+...|+.|+.+++..+.+..
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 46799999999999999999876432100 000123456789999999999988777
Q ss_pred CCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 117 PANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 117 p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
..+ .-+++++|+.+|..|+|+++.+||.-|. |.+-++-.||+||+||...|.
T Consensus 324 K~G------~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 324 KSG------ELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HhC------CceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCc
Confidence 766 5689999999999999999999998442 556667789999999974443
No 61
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.63 E-value=2.4e-07 Score=70.59 Aligned_cols=126 Identities=23% Similarity=0.361 Sum_probs=87.2
Q ss_pred eeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHH
Q psy2956 31 VEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQ 110 (251)
Q Consensus 31 V~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~ 110 (251)
++.+|.+.+. .....+...+.+.. . ..+.+|||.+..+.++.+.+.|.. ....+..+|+.++..+..
T Consensus 2 i~~~~~~~~~-~k~~~i~~~i~~~~-~--~~~~~lvf~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~ 68 (131)
T cd00079 2 IKQYVLPVED-EKLEALLELLKEHL-K--KGGKVLIFCPSKKMLDELAELLRK---------PGIKVAALHGDGSQEERE 68 (131)
T ss_pred cEEEEEECCH-HHHHHHHHHHHhcc-c--CCCcEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHH
Confidence 4445544432 33333333333322 1 367899999999999988888764 356789999999988888
Q ss_pred HhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-
Q psy2956 111 RIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR- 189 (251)
Q Consensus 111 ~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~- 189 (251)
..+.....+ ..+++++|+.+..++++|+...||..+. |.+...-.|+.||++|.+
T Consensus 69 ~~~~~f~~~------~~~ili~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 69 EVLKDFREG------EIVVLVATDVIARGIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred HHHHHHHcC------CCcEEEEcChhhcCcChhhCCEEEEeCC------------------CCCHHHheecccccccCCC
Confidence 777665554 4679999999999999998776665332 334445569999999977
Q ss_pred CCcc
Q psy2956 190 PGKC 193 (251)
Q Consensus 190 ~G~c 193 (251)
.|.|
T Consensus 125 ~~~~ 128 (131)
T cd00079 125 KGTA 128 (131)
T ss_pred CceE
Confidence 4544
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=3.9e-07 Score=87.54 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=98.4
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCccceeee---eCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVEIF---YTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEA 77 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~~~---y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~ 77 (251)
||||.. .+.|.+.|+ ..++.||...-..... |.-....+.+.+.++.+...|.. ...+|||..+.++.+.+
T Consensus 414 mTGTa~~~~~El~~~y~-l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~---~~pvLIft~t~~~se~L 489 (656)
T PRK12898 414 MTGTAREVAGELWSVYG-LPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQ---GRPVLVGTRSVAASERL 489 (656)
T ss_pred ccCcChHHHHHHHHHHC-CCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhc---CCCEEEEeCcHHHHHHH
Confidence 789987 444666664 4567788643111111 11123445666666666555532 34599999999999999
Q ss_pred HHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec---ceE-----EEE
Q psy2956 78 CKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID---GVV-----FVI 149 (251)
Q Consensus 78 ~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~---g~~-----lVf 149 (251)
++.|... ++.+..+|+..+..+..-.-... . ...+.+|||+|..+++|+ ++. +||
T Consensus 490 ~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag--~------~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI 552 (656)
T PRK12898 490 SALLREA---------GLPHQVLNAKQDAEEAAIVARAG--Q------RGRITVATNMAGRGTDIKLEPGVAARGGLHVI 552 (656)
T ss_pred HHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcC--C------CCcEEEEccchhcccCcCCccchhhcCCCEEE
Confidence 9998753 68889999986654433222111 1 235999999999999997 554 788
Q ss_pred eCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 150 DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 150 d~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
.+.+ |-+...-.||.||+||.+ ||.|
T Consensus 553 ~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 553 LTER------------------HDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred EcCC------------------CCCHHHHHHhcccccCCCCCeEE
Confidence 7532 122334469999999977 6776
No 63
>KOG0332|consensus
Probab=98.61 E-value=3.1e-07 Score=81.42 Aligned_cols=158 Identities=17% Similarity=0.241 Sum_probs=114.8
Q ss_pred CeeeeccChHHHH---HhcCCCCeEEeCCC---ccceeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQHLTR---QYFDNAPLMNVPGR---THPVEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~~pvi~i~g~---~~pV~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
|.||||.+...+. ....++.++.+..+ .++|+.+|...+.++ ...+.+. ++... .-|.-++|.-....
T Consensus 268 lLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~-lyg~~----tigqsiIFc~tk~t 342 (477)
T KOG0332|consen 268 LLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN-LYGLL----TIGQSIIFCHTKAT 342 (477)
T ss_pred EeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH-HHhhh----hhhheEEEEeehhh
Confidence 5799999844332 66678888888765 399999998877654 4444433 33322 25778999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
...+++.+... +..|-.+|+.|..+++.++......+ .-|+.++||+..++++++-+.+|++-.+
T Consensus 343 a~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g------~~kVLitTnV~ARGiDv~qVs~VvNydl 407 (477)
T KOG0332|consen 343 AMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAIIDRFREG------KEKVLITTNVCARGIDVAQVSVVVNYDL 407 (477)
T ss_pred HHHHHHHHHhc---------CceeEEeeccchhHHHHHHHHHHhcC------cceEEEEechhhcccccceEEEEEecCC
Confidence 99999888753 67789999999999999998877777 7889999999999999999999999322
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
--. |+...+... -.+|.||+||.+.
T Consensus 408 P~~--~~~~pD~et----------YlHRiGRtGRFGk 432 (477)
T KOG0332|consen 408 PVK--YTGEPDYET----------YLHRIGRTGRFGK 432 (477)
T ss_pred ccc--cCCCCCHHH----------HHHHhcccccccc
Confidence 110 111111111 2369999999763
No 64
>KOG0335|consensus
Probab=98.57 E-value=1.7e-07 Score=86.02 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=103.1
Q ss_pred CeeeeccChH--HHHHhc-CC----CCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCC-----CEEEec
Q psy2956 1 MQIFATRRQH--LTRQYF-DN----APLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEG-----DVLLFL 68 (251)
Q Consensus 1 ~~~sAT~~~~--~~~~yf-~~----~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g-----~iLvFL 68 (251)
++||||...+ ....|| .+ -.|-.+.+..-.+..........+.....++........ ...| .+|||+
T Consensus 266 ~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~-~~~~~~~~e~tlvFv 344 (482)
T KOG0335|consen 266 LLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGP-PSDGEPKWEKTLVFV 344 (482)
T ss_pred EEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCC-cccCCcccceEEEEe
Confidence 5899999822 233333 21 123333333334433322223333333333333222211 1234 699999
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEE
Q psy2956 69 TGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFV 148 (251)
Q Consensus 69 pg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lV 148 (251)
-.....+++...|.. .......+|+.....++.+..+....+ .-.+.|+||+|.+.++|+|+.+|
T Consensus 345 Et~~~~d~l~~~l~~---------~~~~~~sIhg~~tq~er~~al~~Fr~g------~~pvlVaT~VaaRGlDi~~V~hV 409 (482)
T KOG0335|consen 345 ETKRGADELAAFLSS---------NGYPAKSIHGDRTQIEREQALNDFRNG------KAPVLVATNVAARGLDIPNVKHV 409 (482)
T ss_pred eccchhhHHHHHHhc---------CCCCceeecchhhhhHHHHHHHHhhcC------CcceEEEehhhhcCCCCCCCcee
Confidence 999999998887764 378889999999999999888777766 44589999999999999999999
Q ss_pred EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCC
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 191 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G 191 (251)
|+ |+.......++ +|.||+||.+.+
T Consensus 410 In--------yDmP~d~d~Yv----------HRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 410 IN--------YDMPADIDDYV----------HRIGRTGRVGNG 434 (482)
T ss_pred EE--------eecCcchhhHH----------HhccccccCCCC
Confidence 99 65544444444 699999998754
No 65
>KOG0340|consensus
Probab=98.52 E-value=2.6e-07 Score=81.40 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=64.8
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
..|++.+|.....+.+.+...|... +++++.||+.|++.++-..+.....+ .-+++++||+|..+
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~------~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSN------AARILIATDVASRG 317 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhc------CccEEEEechhhcC
Confidence 5899999999998887766655542 89999999999998887776665555 56799999999999
Q ss_pred eeecceEEEEeC
Q psy2956 140 LTIDGVVFVIDP 151 (251)
Q Consensus 140 ltI~g~~lVfd~ 151 (251)
++||.+-+|++-
T Consensus 318 LDIP~V~LVvN~ 329 (442)
T KOG0340|consen 318 LDIPTVELVVNH 329 (442)
T ss_pred CCCCceeEEEec
Confidence 999999999993
No 66
>PRK09694 helicase Cas3; Provisional
Probab=98.49 E-value=1.3e-06 Score=86.79 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHH----HhcccC-CCCCCCCCccceEEEecCc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQ----RIFEAA-PANKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~----~~f~~~-p~~~~~g~~~rkiivst~i 135 (251)
.+.+|||+++.++.+++++.|.+.. .++..+..+|+.+...+++ ++++.. +.+.. ...+++|+|++
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r---~~~~ILVaTQV 630 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKR---NQGRILVATQV 630 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCc---CCCeEEEECcc
Confidence 5689999999999999999987531 1256899999999987763 333322 11210 12579999999
Q ss_pred ccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 136 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 136 aetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
+|.+++|+-+.+|-|. .|+ .+-.||+||++|..
T Consensus 631 iE~GLDId~DvlItdl-------------------aPi--dsLiQRaGR~~R~~ 663 (878)
T PRK09694 631 VEQSLDLDFDWLITQL-------------------CPV--DLLFQRLGRLHRHH 663 (878)
T ss_pred hhheeecCCCeEEECC-------------------CCH--HHHHHHHhccCCCC
Confidence 9999999755544431 121 24569999999964
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.48 E-value=2.2e-06 Score=84.16 Aligned_cols=151 Identities=26% Similarity=0.285 Sum_probs=99.7
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCcccee-eeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVE-IFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~-~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
|+.|.. ++.|.+.| +.+|+.||... |+. .-+.+ ....+...+.+..+...|.. ...+|||..+.++.+.
T Consensus 369 mTGTa~t~~~e~~~~Y-~l~v~~IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~---~~pvLIf~~t~~~se~ 443 (790)
T PRK09200 369 MTGTAKTEEKEFFEVY-NMEVVQIPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHET---GRPVLIGTGSIEQSET 443 (790)
T ss_pred cCCCChHHHHHHHHHh-CCcEEECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhc---CCCEEEEeCcHHHHHH
Confidence 445543 33444444 57888888642 221 11111 12345566666666665532 4569999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee---cceE-----EE
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI---DGVV-----FV 148 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI---~g~~-----lV 148 (251)
+.+.|... ++.+..+|+.+...+.......... + ++.+|||+|.++++| +++. +|
T Consensus 444 l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~-------g-~VlIATdmAgRG~DI~l~~~V~~~GGL~V 506 (790)
T PRK09200 444 FSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQK-------G-AVTVATNMAGRGTDIKLGEGVHELGGLAV 506 (790)
T ss_pred HHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCC-------C-eEEEEccchhcCcCCCcccccccccCcEE
Confidence 98888753 6888999999876665544433221 3 599999999999999 5776 88
Q ss_pred EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
|.+.+ |-+...-.||.||+||.+ ||.|
T Consensus 507 I~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 507 IGTER------------------MESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred EeccC------------------CCCHHHHHHhhccccCCCCCeeE
Confidence 88532 223344569999999977 6765
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.47 E-value=3.3e-06 Score=82.35 Aligned_cols=144 Identities=22% Similarity=0.246 Sum_probs=94.6
Q ss_pred HHHHHhcCCCCeEEeCCCccceeeeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhh
Q psy2956 10 HLTRQYFDNAPLMNVPGRTHPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEID 86 (251)
Q Consensus 10 ~~~~~yf~~~pvi~i~g~~~pV~~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~ 86 (251)
+.|.+.| +-+|+.||...--...-+.+ ....+.+.+.++.+.+.|.. ...+|||..+.+..+.+.+.|...
T Consensus 374 ~Ef~~iY-~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~---~~pvLIft~s~~~se~ls~~L~~~-- 447 (762)
T TIGR03714 374 KEFIETY-SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHET---GQPVLLITGSVEMSEIYSELLLRE-- 447 (762)
T ss_pred HHHHHHh-CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhC---CCCEEEEECcHHHHHHHHHHHHHC--
Confidence 4444444 47788888743111111111 12345566677777666643 446999999999999888888652
Q ss_pred hcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec---------ceEEEEeCCcccce
Q psy2956 87 NLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID---------GVVFVIDPGFAKQK 157 (251)
Q Consensus 87 ~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~---------g~~lVfd~G~~~~~ 157 (251)
++....||+.++..+...++..... + ++.+|||+|.++++|+ |+-+|+.
T Consensus 448 -------gi~~~~L~a~~~~~E~~ii~~ag~~-------g-~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit------- 505 (762)
T TIGR03714 448 -------GIPHNLLNAQNAAKEAQIIAEAGQK-------G-AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT------- 505 (762)
T ss_pred -------CCCEEEecCCChHHHHHHHHHcCCC-------C-eEEEEccccccccCCCCCccccccCCeEEEEe-------
Confidence 6778899999988776665543322 2 6899999999999998 5555554
Q ss_pred eeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 158 VYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 158 ~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
|++. +.....||.||+||.+ ||.+
T Consensus 506 -~~~p-----------s~rid~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 506 -ERME-----------NSRVDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred -cCCC-----------CcHHHHHhhhcccCCCCceeE
Confidence 2221 1123369999999987 6765
No 69
>KOG0338|consensus
Probab=98.31 E-value=9e-07 Score=81.36 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=59.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...++||+-.......++=.| +.+ .+++--||++|.++.+-...+..... ...+.++||+|..++
T Consensus 426 ~~~~ivFv~tKk~AHRl~Ill-GLl--------gl~agElHGsLtQ~QRlesL~kFk~~------eidvLiaTDvAsRGL 490 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILL-GLL--------GLKAGELHGSLTQEQRLESLEKFKKE------EIDVLIATDVASRGL 490 (691)
T ss_pred ccceEEEEehHHHHHHHHHHH-HHh--------hchhhhhcccccHHHHHHHHHHHHhc------cCCEEEEechhhccC
Confidence 456999999988776654432 221 67788899999998887776665555 455899999999999
Q ss_pred eecceEEEEeC
Q psy2956 141 TIDGVVFVIDP 151 (251)
Q Consensus 141 tI~g~~lVfd~ 151 (251)
+|+|+-.||+-
T Consensus 491 DI~gV~tVINy 501 (691)
T KOG0338|consen 491 DIEGVQTVINY 501 (691)
T ss_pred CccceeEEEec
Confidence 99999999994
No 70
>KOG0343|consensus
Probab=98.29 E-value=3.2e-06 Score=78.54 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=103.1
Q ss_pred CeeeeccC--hHHHHHh-cCCCCeEEeCCC---ccc--eeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATRR--QHLTRQY-FDNAPLMNVPGR---THP--VEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~~--~~~~~~y-f~~~pvi~i~g~---~~p--V~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
++||||-- ...+.+. +.++-.|.+-.. .+| ...+|.-.+..+.+.... ..+.-|. ..-++|||.+..
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~-sFI~shl----k~K~iVF~SscK 324 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW-SFIKSHL----KKKSIVFLSSCK 324 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHH-HHHHhcc----ccceEEEEehhh
Confidence 57999865 2223332 345555655421 133 345666666666665443 3344454 345999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
++.-+|+..... +|.+.++.||++|.+..+-.+|...-.. ..-+.+|||++.++++.|-+-.||--
T Consensus 325 qvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~------~~~vLF~TDv~aRGLDFpaVdwViQ~- 390 (758)
T KOG0343|consen 325 QVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYKKFVRK------RAVVLFCTDVAARGLDFPAVDWVIQV- 390 (758)
T ss_pred HHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHHHHHHh------cceEEEeehhhhccCCCcccceEEEe-
Confidence 999999887743 5799999999999998888887654432 34467899999999999977777652
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
|-..++..+ .+|+||..|-. .|.|+
T Consensus 391 -------DCPedv~tY----------IHRvGRtAR~~~~G~sl 416 (758)
T KOG0343|consen 391 -------DCPEDVDTY----------IHRVGRTARYKERGESL 416 (758)
T ss_pred -------cCchhHHHH----------HHHhhhhhcccCCCceE
Confidence 212222222 25888877744 47763
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.28 E-value=1.4e-05 Score=77.75 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=96.9
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCc------cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRT------HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~------~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|+.|.. ++.|.+.| +.+|+.||.-. +|-.+ |. ...+.+.+.++.+.+.|.. .-.+|||..+.++.
T Consensus 346 mTGTa~te~~E~~~iY-~l~vv~IPtnkp~~R~d~~d~i-~~--t~~~k~~ai~~~i~~~~~~---grpvLV~t~si~~s 418 (745)
T TIGR00963 346 MTGTAKTEEEEFEKIY-NLEVVVVPTNRPVIRKDLSDLV-YK--TEEEKWKAVVDEIKERHAK---GQPVLVGTTSVEKS 418 (745)
T ss_pred cCCCcHHHHHHHHHHh-CCCEEEeCCCCCeeeeeCCCeE-Ec--CHHHHHHHHHHHHHHHHhc---CCCEEEEeCcHHHH
Confidence 444544 34455555 57788888743 22222 22 2345667777777777753 44599999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecc-------eEE
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDG-------VVF 147 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g-------~~l 147 (251)
+.+.+.|.+. .+....+|+. ...++..+-....+ .-.+.+|||+|.++++|+. ..+
T Consensus 419 e~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~------~g~VtIATnmAgRGtDI~l~~V~~~GGl~ 481 (745)
T TIGR00963 419 ELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGR------KGAVTIATNMAGRGTDIKLEEVKELGGLY 481 (745)
T ss_pred HHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCC------CceEEEEeccccCCcCCCccchhhcCCcE
Confidence 9999888753 6677888888 33444443332222 3468999999999998865 335
Q ss_pred EEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 148 VIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 148 Vfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
||.+. .|-+.-...||.||+||.+ ||.+
T Consensus 482 VI~t~------------------~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 482 VIGTE------------------RHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEecC------------------CCCcHHHHHHHhccccCCCCCcce
Confidence 55542 2334446679999999987 5764
No 72
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.27 E-value=1.3e-05 Score=78.48 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=98.3
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCccceeeeeCCC----CchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVEIFYTPE----PERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~----~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
|+.|.. ++.|.+.| +-+|+.||.-. |+.-.-.+. .....+.+.++.+...|.. ...+|||..+.++.+.
T Consensus 381 mTGTa~~e~~Ef~~iY-~l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~---g~pvLI~t~si~~se~ 455 (796)
T PRK12906 381 MTGTAKTEEEEFREIY-NMEVITIPTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAK---GQPVLVGTVAIESSER 455 (796)
T ss_pred cCCCCHHHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhC---CCCEEEEeCcHHHHHH
Confidence 344443 34455544 57788888743 332111111 2344566677777666643 4569999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee---cceE-----EE
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI---DGVV-----FV 148 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI---~g~~-----lV 148 (251)
+.+.|.+. .+..-.+++.....+..-+-..... + .+.+|||.|.++.+| +++. +|
T Consensus 456 ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~-------g-~VtIATnmAGRGtDI~l~~~V~~~GGLhV 518 (796)
T PRK12906 456 LSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQR-------G-AVTIATNMAGRGTDIKLGPGVKELGGLAV 518 (796)
T ss_pred HHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCC-------c-eEEEEeccccCCCCCCCCcchhhhCCcEE
Confidence 88888753 5677889998875555544333222 3 499999999999998 3666 77
Q ss_pred EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
|.+-+ |-+.-...||.||+||.+ ||.+
T Consensus 519 I~te~------------------pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 519 IGTER------------------HESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred Eeeec------------------CCcHHHHHHHhhhhccCCCCcce
Confidence 77522 233445679999999987 5764
No 73
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.20 E-value=7.2e-06 Score=79.60 Aligned_cols=105 Identities=23% Similarity=0.167 Sum_probs=82.2
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|||.++....+.+.+.|.+. ++.+..+|+.++..++.+.+.....+ .-.++++|+.+..++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G------~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLG------EFDVLVGINLLREGL 506 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcC------CceEEEEcChhcCCe
Confidence 557999999999999999888753 67888999999998888887776655 567889999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c 193 (251)
++|++.+|+.+.-+.- -.|-+..+-.||+||+||..+|+|
T Consensus 507 DiP~v~lVvi~Dadif-------------G~p~~~~~~iqriGRagR~~~G~v 546 (655)
T TIGR00631 507 DLPEVSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKV 546 (655)
T ss_pred eeCCCcEEEEeCcccc-------------cCCCCHHHHHHHhcCCCCCCCCEE
Confidence 9999999887532211 112233345699999999988986
No 74
>KOG0341|consensus
Probab=98.16 E-value=5e-06 Score=74.35 Aligned_cols=114 Identities=19% Similarity=0.364 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCC
Q psy2956 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPN 122 (251)
Q Consensus 43 ~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~ 122 (251)
|+..-.+.++-+..-++..--+|+|.--..+++..||.|+- .....+..|+.-+.+++.........+
T Consensus 403 yVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl---------KGVEavaIHGGKDQedR~~ai~afr~g--- 470 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLL---------KGVEAVAIHGGKDQEDRHYAIEAFRAG--- 470 (610)
T ss_pred HHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHH---------ccceeEEeecCcchhHHHHHHHHHhcC---
Confidence 44433344433332223345699999999999999999863 378889999999999999887776666
Q ss_pred CCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 123 GGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 123 g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
...+.|+||+|...++.|++-+||+ ||.......++ +|.||+||.+
T Consensus 471 ---kKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENYV----------HRIGRTGRsg 516 (610)
T KOG0341|consen 471 ---KKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENYV----------HRIGRTGRSG 516 (610)
T ss_pred ---CCceEEEecchhccCCCccchhhcc--------CCChHHHHHHH----------HHhcccCCCC
Confidence 6779999999999999999999999 44433333333 5888887754
No 75
>KOG0339|consensus
Probab=98.14 E-value=7.2e-06 Score=75.57 Aligned_cols=156 Identities=22% Similarity=0.378 Sum_probs=100.7
Q ss_pred CeeeeccC---hHHHHHhcCCCCeEEeCC----Ccccee--eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCH
Q psy2956 1 MQIFATRR---QHLTRQYFDNAPLMNVPG----RTHPVE--IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71 (251)
Q Consensus 1 ~~~sAT~~---~~~~~~yf~~~pvi~i~g----~~~pV~--~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~ 71 (251)
++||||+- ..+-++++.++ |=.+.| ..-.|+ |+-.+. ....+....+.+ .... -.|++|+|++-.
T Consensus 405 llFsaTf~~kIe~lard~L~dp-VrvVqg~vgean~dITQ~V~V~~s-~~~Kl~wl~~~L---~~f~-S~gkvlifVTKk 478 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDP-VRVVQGEVGEANEDITQTVSVCPS-EEKKLNWLLRHL---VEFS-SEGKVLIFVTKK 478 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCC-eeEEEeehhccccchhheeeeccC-cHHHHHHHHHHh---hhhc-cCCcEEEEEecc
Confidence 47999998 33445777653 333333 122222 222222 223333333222 2112 279999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeC
Q psy2956 72 EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDP 151 (251)
Q Consensus 72 ~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~ 151 (251)
.+.+++...|.. .++.+..+|.+++..++.+........ ...+.++||+|...++|+.+.-|+++
T Consensus 479 ~~~e~i~a~Lkl---------k~~~v~llhgdkdqa~rn~~ls~fKkk------~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 479 ADAEEIAANLKL---------KGFNVSLLHGDKDQAERNEVLSKFKKK------RKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred CCHHHHHHHhcc---------ccceeeeecCchhhHHHHHHHHHHhhc------CCceEEEeeHhhcCCCccccceeecc
Confidence 999888777652 489999999999998888887665543 34578999999999999999999996
Q ss_pred CcccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Ccccc
Q psy2956 152 GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKCFR 195 (251)
Q Consensus 152 G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c~R 195 (251)
-+.+ ++.. ..||.||.||.+. |..|-
T Consensus 544 D~ar--------dIdt----------hthrigrtgRag~kGvayT 570 (731)
T KOG0339|consen 544 DFAR--------DIDT----------HTHRIGRTGRAGEKGVAYT 570 (731)
T ss_pred cccc--------hhHH----------HHHHhhhcccccccceeeE
Confidence 4432 2221 2378888888664 76544
No 76
>KOG0326|consensus
Probab=98.13 E-value=5.5e-06 Score=72.42 Aligned_cols=154 Identities=19% Similarity=0.292 Sum_probs=107.3
Q ss_pred CeeeeccC---hHHHHHhcCCCCeEEeCCCc--cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRR---QHLTRQYFDNAPLMNVPGRT--HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~---~~~~~~yf~~~pvi~i~g~~--~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
+++|||.. .+-..+|+.++-.|++-... -.|+.||.-..++..+.....+...+..+ .-++|.++.+.++
T Consensus 262 llySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqIN-----QsIIFCNS~~rVE 336 (459)
T KOG0326|consen 262 LLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQIN-----QSIIFCNSTNRVE 336 (459)
T ss_pred eEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhccc-----ceEEEeccchHhH
Confidence 46788877 33334677777777776543 55667776555554443332222233322 3679999999998
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
-+.+.+.+. .+...-.||.|-.+.+.++|.+...+ .-+..|+||..-+.++|+.+-+||+..+.+
T Consensus 337 LLAkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~G------~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 337 LLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRNG------KCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred HHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhcc------ccceeeehhhhhcccccceeeEEEecCCCC
Confidence 888877653 56677889999999999999998887 556889999999999999999999853322
Q ss_pred ceeeCCccccccceEEEcccchHHHHhcccCCCCC-Cc
Q psy2956 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GK 192 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~ 192 (251)
..+++ -+|.||.||.+. |.
T Consensus 402 --------~aEtY----------LHRIGRsGRFGhlGl 421 (459)
T KOG0326|consen 402 --------NAETY----------LHRIGRSGRFGHLGL 421 (459)
T ss_pred --------CHHHH----------HHHccCCccCCCcce
Confidence 11222 359999999764 54
No 77
>KOG4284|consensus
Probab=98.09 E-value=8.7e-06 Score=76.97 Aligned_cols=157 Identities=16% Similarity=0.240 Sum_probs=107.8
Q ss_pred eeeeccC---hHHHHHhcCCCCeEEeCCC---ccceeeeeCCCCchh-HHHH---HHHHHHHHhhccccCCCEEEecCCH
Q psy2956 2 QIFATRR---QHLTRQYFDNAPLMNVPGR---THPVEIFYTPEPERD-YLEA---AIRTVVQIHMCEEVEGDVLLFLTGQ 71 (251)
Q Consensus 2 ~~sAT~~---~~~~~~yf~~~pvi~i~g~---~~pV~~~y~~~~~~~-~~~~---~~~~v~~i~~~~~~~g~iLvFLpg~ 71 (251)
.||||.+ .+++++|+.++-.++...+ .+.++.||-..+..+ ..+. -.+.+-++... -+--..|||....
T Consensus 204 a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~-ipy~QAlVF~~~~ 282 (980)
T KOG4284|consen 204 AFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS-IPYVQALVFCDQI 282 (980)
T ss_pred EEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhh-CchHHHHhhhhhh
Confidence 5899999 6788999999988888764 378887775444332 2221 12222222211 1234589998877
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeC
Q psy2956 72 EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDP 151 (251)
Q Consensus 72 ~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~ 151 (251)
...+.....|.. .++-+-..|+.|+..++...|...... .-++.++||...++++-|.+-|||+-
T Consensus 283 sra~~~a~~L~s---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f------~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 283 SRAEPIATHLKS---------SGLDVTFISGAMSQKDRLLAVDQLRAF------RVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred hhhhHHHHHhhc---------cCCCeEEeccccchhHHHHHHHHhhhc------eEEEEEecchhhccCCccccceEEec
Confidence 766665555542 377788899999999999888877766 56799999999999999999999883
Q ss_pred CcccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Cc
Q psy2956 152 GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GK 192 (251)
Q Consensus 152 G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~ 192 (251)
|+..+..++ -+|.|||||.+. |.
T Consensus 348 --------D~p~d~eTY----------~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 348 --------DAPADEETY----------FHRIGRAGRFGAHGA 371 (980)
T ss_pred --------CCCcchHHH----------HHHhhhcccccccce
Confidence 332222222 259999999764 53
No 78
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.09 E-value=3.6e-06 Score=58.78 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=60.6
Q ss_pred CCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEE
Q psy2956 93 GELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSP 172 (251)
Q Consensus 93 ~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~p 172 (251)
.++++..+|+.++.+++...++....+ ...++++|++++.++++|++.+|+..+. |
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~------~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~ 61 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSG------EIRVLIATDILGEGIDLPDASHVIFYDP------------------P 61 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTT------SSSEEEESCGGTTSSTSTTESEEEESSS------------------E
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhcc------CceEEEeecccccccccccccccccccc------------------C
Confidence 378899999999999999887766655 4479999999999999999999998644 5
Q ss_pred cccchHHHHhcccCCC
Q psy2956 173 ISKASAQQRAGRAGRT 188 (251)
Q Consensus 173 is~~~a~qR~gragr~ 188 (251)
.+.....|+.||++|.
T Consensus 62 ~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 62 WSPEEYIQRIGRAGRI 77 (78)
T ss_dssp SSHHHHHHHHTTSSTT
T ss_pred CCHHHHHHHhhcCCCC
Confidence 5666788999999985
No 79
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.08 E-value=1.5e-05 Score=77.67 Aligned_cols=106 Identities=24% Similarity=0.165 Sum_probs=82.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...++||.++....+.+.+.|... ++++..+|+.++..++...+.....+ .-.++|+|+.++.++
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g------~i~vlV~t~~L~rGf 510 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLG------EFDVLVGINLLREGL 510 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcC------CceEEEEeCHHhCCc
Confidence 456999999999999998888752 68899999999998888777766555 456889999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 194 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~ 194 (251)
.+|++.+|+.+..+.- -.|-+..+-.||+||+||...|+|+
T Consensus 511 dlp~v~lVii~d~eif-------------G~~~~~~~yiqr~GR~gR~~~G~~i 551 (652)
T PRK05298 511 DIPEVSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVI 551 (652)
T ss_pred cccCCcEEEEeCCccc-------------ccCCCHHHHHHHhccccCCCCCEEE
Confidence 9999999998643210 0112333457999999999888864
No 80
>KOG0348|consensus
Probab=98.05 E-value=1.6e-05 Score=73.75 Aligned_cols=122 Identities=22% Similarity=0.342 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhh-------------cCCCCCCeEEEEccCCCChhhH
Q psy2956 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDN-------------LGPEAGELKCIPLYSTLPPNLQ 109 (251)
Q Consensus 43 ~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~-------------l~~~~~~l~vi~lsatl~~~~~ 109 (251)
.+-+....+.+....++ .--++||+...+.++-=++.+.+.+-. +.+-.-++|+.-||+.|.++++
T Consensus 408 RLV~Laa~L~~~~k~~~-~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEE-KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred hHHHHHHHHHHHhhhhh-hceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 34444444555554443 346799999999998877777654322 0011236899999999999999
Q ss_pred HHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 110 QRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 110 ~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
...|+..... .+-+.+|||+|.+++++|.+.+||- ||+.. +.+.-.+|+||+.|.+
T Consensus 487 ts~f~~Fs~~------~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~----------s~adylHRvGRTARaG 542 (708)
T KOG0348|consen 487 TSVFQEFSHS------RRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPF----------STADYLHRVGRTARAG 542 (708)
T ss_pred HHHHHhhccc------cceEEEehhhhhccCCCCCcCeEEE--------eCCCC----------CHHHHHHHhhhhhhcc
Confidence 9999887765 5668899999999999999999997 77643 3333447888876654
No 81
>KOG0327|consensus
Probab=98.04 E-value=2.8e-05 Score=69.38 Aligned_cols=149 Identities=15% Similarity=0.310 Sum_probs=99.9
Q ss_pred CeeeeccChHHHH---HhcCCCCeEEeCC--Cc-cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQHLTR---QYFDNAPLMNVPG--RT-HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~~pvi~i~g--~~-~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+++|||+..+.+. +|..++-.|.+.- .+ --++.+|........+ .+.++++. + ....++|.++.+.+
T Consensus 204 ~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~----~~l~dl~~-~--~~q~~if~nt~r~v 276 (397)
T KOG0327|consen 204 VLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKL----DTLCDLYR-R--VTQAVIFCNTRRKV 276 (397)
T ss_pred eeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccc----cHHHHHHH-h--hhcceEEecchhhH
Confidence 4799999977665 5555554454442 11 2233444332222222 34445554 1 45678999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+.+.|.. .+.++..+|+.++..++.........+ .-++.++|+....++.+..+-+||+
T Consensus 277 ~~l~~~L~~---------~~~~~s~~~~d~~q~~R~~~~~ef~~g------ssrvlIttdl~argidv~~~slvin---- 337 (397)
T KOG0327|consen 277 DNLTDKLRA---------HGFTVSAIHGDMEQNERDTLMREFRSG------SSRVLITTDLLARGIDVQQVSLVVN---- 337 (397)
T ss_pred HHHHHHHhh---------CCceEEEeecccchhhhhHHHHHhhcC------CceEEeeccccccccchhhcceeee----
Confidence 999988853 388999999999998888766555555 4579999999999999999999988
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
|+...+ ...|+ +|+||+||.+
T Consensus 338 ----ydlP~~----~~~yi------hR~gr~gr~g 358 (397)
T KOG0327|consen 338 ----YDLPAR----KENYI------HRIGRAGRFG 358 (397)
T ss_pred ----eccccc----hhhhh------hhcccccccC
Confidence 433222 23344 4888887754
No 82
>KOG0336|consensus
Probab=98.01 E-value=2.2e-05 Score=70.82 Aligned_cols=150 Identities=17% Similarity=0.286 Sum_probs=100.0
Q ss_pred eeeeccC---hHHHHHhcCCCCeEEeCCCc-----cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 2 QIFATRR---QHLTRQYFDNAPLMNVPGRT-----HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 2 ~~sAT~~---~~~~~~yf~~~pvi~i~g~~-----~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+-|||-. ..+-++|..+ |++..-|.. ..|+.++.-..+.+.++. +.....-+. ....+++|+.....
T Consensus 403 mTSATWP~~VrrLa~sY~Ke-p~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~-~~~f~~~ms---~ndKvIiFv~~K~~ 477 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKE-PMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEI-VQFFVANMS---SNDKVIIFVSRKVM 477 (629)
T ss_pred eecccCchHHHHHHHHhhhC-ceEEEecccceeeeeeeeeeEEecccHHHHHH-HHHHHHhcC---CCceEEEEEechhh
Confidence 4588887 4566688865 455555533 667766654445555533 233333332 24569999998766
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
.+.+-.-+. ...+..-.+|+.-++.+++...++...+ ..++.++||+|...++++++++|++
T Consensus 478 AD~LSSd~~---------l~gi~~q~lHG~r~Q~DrE~al~~~ksG------~vrILvaTDlaSRGlDv~DiTHV~N--- 539 (629)
T KOG0336|consen 478 ADHLSSDFC---------LKGISSQSLHGNREQSDREMALEDFKSG------EVRILVATDLASRGLDVPDITHVYN--- 539 (629)
T ss_pred hhhccchhh---------hcccchhhccCChhhhhHHHHHHhhhcC------ceEEEEEechhhcCCCchhcceeec---
Confidence 665433322 1255566789999999999998888877 6789999999999999999999998
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
||-..+...++ +|+||.||.+
T Consensus 540 -----yDFP~nIeeYV----------HRvGrtGRaG 560 (629)
T KOG0336|consen 540 -----YDFPRNIEEYV----------HRVGRTGRAG 560 (629)
T ss_pred -----cCCCccHHHHH----------HHhcccccCC
Confidence 44333333333 5777776654
No 83
>PRK13766 Hef nuclease; Provisional
Probab=98.01 E-value=3.3e-05 Score=76.65 Aligned_cols=106 Identities=28% Similarity=0.424 Sum_probs=78.7
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCC--------CChhhHHHhcccCCCCCCCCCccceEEE
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYST--------LPPNLQQRIFEAAPANKPNGGIGRKVVV 131 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsat--------l~~~~~~~~f~~~p~~~~~g~~~rkiiv 131 (251)
..+.+|||....+.++.+.+.|... .+....+++. ++..++.+.......+ ..++++
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g------~~~vLv 428 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG------EFNVLV 428 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccccccCCCCHHHHHHHHHHHHcC------CCCEEE
Confidence 4678999999999999988887532 3444555544 7777777666555444 467999
Q ss_pred ecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 132 STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 132 st~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
+|++++.++++|+..+||. |++. .+.....||+||+||.++|++|.+..
T Consensus 429 aT~~~~eGldi~~~~~VI~--------yd~~----------~s~~r~iQR~GR~gR~~~~~v~~l~~ 477 (773)
T PRK13766 429 STSVAEEGLDIPSVDLVIF--------YEPV----------PSEIRSIQRKGRTGRQEEGRVVVLIA 477 (773)
T ss_pred ECChhhcCCCcccCCEEEE--------eCCC----------CCHHHHHHHhcccCcCCCCEEEEEEe
Confidence 9999999999999988887 5542 23335678999999999999876543
No 84
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.00 E-value=6.3e-05 Score=73.98 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=108.5
Q ss_pred eeeeccC-hHHHHHhcCC----CCeEEeCC-CccceeeeeCCCCc---hhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 2 QIFATRR-QHLTRQYFDN----APLMNVPG-RTHPVEIFYTPEPE---RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 2 ~~sAT~~-~~~~~~yf~~----~pvi~i~g-~~~pV~~~y~~~~~---~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
-+|||.. .+...+|+.+ |-++.+.+ +.+.+++....... ..-...++..+.++-.. ....|||.++..
T Consensus 188 GLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~---~~ttLIF~NTR~ 264 (814)
T COG1201 188 GLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK---HRTTLIFTNTRS 264 (814)
T ss_pred eehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh---cCcEEEEEeChH
Confidence 5799997 6667777764 46788875 56777776543321 11233344555554432 347999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
..+.+..+|.+.. +..+..-|++++.+.+...=+....+ .-++++||.-.|-+|+|-++.+||.
T Consensus 265 ~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G------~lravV~TSSLELGIDiG~vdlVIq-- 328 (814)
T COG1201 265 GAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEG------ELKAVVATSSLELGIDIGDIDLVIQ-- 328 (814)
T ss_pred HHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcC------CceEEEEccchhhccccCCceEEEE--
Confidence 9998888887542 25677788999999888776655555 5789999999999999999999998
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
|++...+. ..-||.||+|+.-.
T Consensus 329 ------~~SP~sV~----------r~lQRiGRsgHr~~ 350 (814)
T COG1201 329 ------LGSPKSVN----------RFLQRIGRAGHRLG 350 (814)
T ss_pred ------eCCcHHHH----------HHhHhccccccccC
Confidence 33333333 34599999988543
No 85
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.98 E-value=1.4e-05 Score=55.53 Aligned_cols=71 Identities=38% Similarity=0.461 Sum_probs=58.0
Q ss_pred CeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEc
Q psy2956 94 ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPI 173 (251)
Q Consensus 94 ~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pi 173 (251)
++++..+|+.++.+++...+.....+ ..+++++|+..+.+++++++..||..+. |.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~------~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~ 66 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNG------KIKVLVATDVAERGLDLPGVDLVIIYDL------------------PW 66 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcC------CCeEEEECChhhCCcChhcCCEEEEeCC------------------CC
Confidence 68899999999999888877665554 4589999999999999998888887543 55
Q ss_pred ccchHHHHhcccCCC
Q psy2956 174 SKASAQQRAGRAGRT 188 (251)
Q Consensus 174 s~~~a~qR~gragr~ 188 (251)
+.....|+.||++|.
T Consensus 67 ~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 67 SPASYIQRIGRAGRA 81 (82)
T ss_pred CHHHHHHhhcccccC
Confidence 666778999999884
No 86
>KOG0334|consensus
Probab=97.97 E-value=3.9e-05 Score=75.86 Aligned_cols=155 Identities=19% Similarity=0.328 Sum_probs=104.3
Q ss_pred CeeeeccChHHHH---HhcCCCCe-EEeCCCc---cceeeeeCCCC-chhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATRRQHLTR---QYFDNAPL-MNVPGRT---HPVEIFYTPEP-ERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~~~pv-i~i~g~~---~pV~~~y~~~~-~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
++||||....+.+ .-.. .|+ +.+.|+. -.|+..+.-.+ ....+.....++... .+ .|+++||+..++
T Consensus 550 vlfSatfpr~m~~la~~vl~-~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~---~e-~~~tiiFv~~qe 624 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLK-KPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGER---YE-DGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhc-CCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHH---hh-cCCEEEEEcCch
Confidence 4789999876554 2222 454 4444543 23333222222 333444444333222 22 789999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 73 EIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
.++.+.+.|... .+-...+|+..+...++...++...+ .-.+.++|+.+...+.+..+.+||+
T Consensus 625 ~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti~dfK~~------~~~LLvaTsvvarGLdv~~l~Lvvn-- 687 (997)
T KOG0334|consen 625 KADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTIEDFKNG------VVNLLVATSVVARGLDVKELILVVN-- 687 (997)
T ss_pred HHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHHHHHhcc------CceEEEehhhhhcccccccceEEEE--
Confidence 999999988753 55556699999999888887666655 4568899999999999999999988
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Ccc
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKC 193 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c 193 (251)
|+-......+. +|+||+||+++ |.|
T Consensus 688 ------yd~pnh~edyv----------hR~gRTgragrkg~A 713 (997)
T KOG0334|consen 688 ------YDFPNHYEDYV----------HRVGRTGRAGRKGAA 713 (997)
T ss_pred ------cccchhHHHHH----------HHhcccccCCcccee
Confidence 55444444433 69999988876 544
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.95 E-value=3e-05 Score=77.93 Aligned_cols=141 Identities=18% Similarity=0.290 Sum_probs=100.0
Q ss_pred CeEEeCC-CccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEE
Q psy2956 20 PLMNVPG-RTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCI 98 (251)
Q Consensus 20 pvi~i~g-~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi 98 (251)
.+|..|. ..+||.+|..+.... .+.+| ++.-+. ..|.+-.-.|..++|+++.+.|++.+ |+.++.
T Consensus 768 SvI~TPP~~R~pV~T~V~~~d~~-~ireA---I~REl~---RgGQvfYv~NrV~~Ie~~~~~L~~LV-------PEarI~ 833 (1139)
T COG1197 768 SVIATPPEDRLPVKTFVSEYDDL-LIREA---ILRELL---RGGQVFYVHNRVESIEKKAERLRELV-------PEARIA 833 (1139)
T ss_pred hhccCCCCCCcceEEEEecCChH-HHHHH---HHHHHh---cCCEEEEEecchhhHHHHHHHHHHhC-------CceEEE
Confidence 4666663 459999998764332 22222 222222 26888888899999999999998764 799999
Q ss_pred EccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecce-EEEEeCCcccceeeCCccccccceEEEcccch
Q psy2956 99 PLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGV-VFVIDPGFAKQKVYNPRIRVESLLVSPISKAS 177 (251)
Q Consensus 99 ~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~-~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~ 177 (251)
+-|+.|...+.++++...-.+ .-.+.|||-|.|++++||+. +++|+- -..-++..|
T Consensus 834 vaHGQM~e~eLE~vM~~F~~g------~~dVLv~TTIIEtGIDIPnANTiIIe~--------AD~fGLsQL--------- 890 (1139)
T COG1197 834 VAHGQMRERELEEVMLDFYNG------EYDVLVCTTIIETGIDIPNANTIIIER--------ADKFGLAQL--------- 890 (1139)
T ss_pred EeecCCCHHHHHHHHHHHHcC------CCCEEEEeeeeecCcCCCCCceEEEec--------cccccHHHH---------
Confidence 999999999999998877766 56699999999999999975 455551 001122222
Q ss_pred HHHHhcccCCCCC-Cccccccc
Q psy2956 178 AQQRAGRAGRTRP-GKCFRYIV 198 (251)
Q Consensus 178 a~qR~gragr~~~-G~c~Rl~~ 198 (251)
-|-.||+||... +.||=+|-
T Consensus 891 -yQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 891 -YQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred -HHhccccCCccceEEEEEeec
Confidence 277899999653 66775543
No 88
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.95 E-value=2.6e-05 Score=73.71 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=74.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEec-Ccccce
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST-NIAETS 139 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst-~iaets 139 (251)
.+..|||....+..+.+++.|... ...+..+|+.++.+++.+.......+ ...++++| +++..+
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~------~~~vLvaT~~~l~eG 408 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGG------KGIIIVASYGVFSTG 408 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCC------CCeEEEEEcceeccc
Confidence 567999999988888777777642 45789999999998887765554433 44577777 999999
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
+++|++..||+. .|.. |+..-.||+||++|..+|+
T Consensus 409 ~Dip~ld~vIl~--------~p~~----------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFA--------HPSK----------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEe--------cCCc----------chhhhhhhhhccccCCCCC
Confidence 999999888873 1111 2334569999999998886
No 89
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.89 E-value=2.4e-05 Score=73.24 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=109.2
Q ss_pred CeeeeccC-hHHHHHhcCCCCeEEeCCCccceeeeeCCCC-ch---hHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRR-QHLTRQYFDNAPLMNVPGRTHPVEIFYTPEP-ER---DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~-~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~-~~---~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
+.+|||+. .+.++++++ +..+.-.+|.-|++-|-.-.. .. |.+...++.=++-.......|.-+||-.+.....
T Consensus 376 i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h 454 (830)
T COG1202 376 IYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCH 454 (830)
T ss_pred EEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHH
Confidence 35899986 677888884 778888999888885532211 22 3333333322332233345799999999998888
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
++...|.. ..++.-+-||.|+..+++++=.....+ .-.++|+|......++.|-.-.+|.+
T Consensus 455 ~lA~~L~~---------kG~~a~pYHaGL~y~eRk~vE~~F~~q------~l~~VVTTAAL~AGVDFPASQVIFEs---- 515 (830)
T COG1202 455 ELADALTG---------KGLKAAPYHAGLPYKERKSVERAFAAQ------ELAAVVTTAALAAGVDFPASQVIFES---- 515 (830)
T ss_pred HHHHHhhc---------CCcccccccCCCcHHHHHHHHHHHhcC------CcceEeehhhhhcCCCCchHHHHHHH----
Confidence 77776653 378999999999998887663332223 34478888877777766655555553
Q ss_pred ceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
..+-+.|++...=+|..|||||+.
T Consensus 516 ----------LaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 516 ----------LAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred ----------HHcccccCCHHHHHHHhcccCCCC
Confidence 235578999999999999999964
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.85 E-value=0.00023 Score=70.58 Aligned_cols=112 Identities=23% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHhcCCCCeEEeCCCccceeeeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhh
Q psy2956 10 HLTRQYFDNAPLMNVPGRTHPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEID 86 (251)
Q Consensus 10 ~~~~~yf~~~pvi~i~g~~~pV~~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~ 86 (251)
+.|.+.| +-+|+.||.-.--+..-+.+ ....+.+.+.++.+.+.|.. ..-+|||..+.+..+.+.+.|...
T Consensus 394 ~Ef~~iY-~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~---g~PVLVgt~Sie~sE~ls~~L~~~-- 467 (896)
T PRK13104 394 YEFQQIY-NLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVR---KQPVLVGTVSIEASEFLSQLLKKE-- 467 (896)
T ss_pred HHHHHHh-CCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhC---CCCEEEEeCcHHHHHHHHHHHHHc--
Confidence 3344433 46788888742111111111 12355677777888787754 445999999999999988888753
Q ss_pred hcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 87 NLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 87 ~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
.+....|||.....+...+...... + .|.+|||+|.++++|
T Consensus 468 -------gi~h~vLnak~~q~Ea~iia~Ag~~-------G-~VtIATNmAGRGtDI 508 (896)
T PRK13104 468 -------NIKHQVLNAKFHEKEAQIIAEAGRP-------G-AVTIATNMAGRGTDI 508 (896)
T ss_pred -------CCCeEeecCCCChHHHHHHHhCCCC-------C-cEEEeccCccCCcce
Confidence 7888999999998877777665443 3 499999999988877
No 91
>KOG0350|consensus
Probab=97.83 E-value=6.7e-05 Score=69.13 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=81.8
Q ss_pred CCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceee
Q psy2956 62 GDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 62 g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetslt 141 (251)
-.+|+|..+.+....++..|.-.+.. ...++=.+++.++...+.++......+ +-++.+++|+..++++
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~~s~~t~~l~~k~r~k~l~~f~~g------~i~vLIcSD~laRGiD 498 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCS-----DNFKVSEFTGQLNGKRRYKMLEKFAKG------DINVLICSDALARGID 498 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcc-----ccchhhhhhhhhhHHHHHHHHHHHhcC------CceEEEehhhhhcCCc
Confidence 35999999999999888887744433 245555588999999888887776666 6779999999999999
Q ss_pred ecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Ccccc
Q psy2956 142 IDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKCFR 195 (251)
Q Consensus 142 I~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c~R 195 (251)
+.++.-||+ ||+......++ +|+||++|.+. |.||-
T Consensus 499 v~~v~~VIN--------Yd~P~~~ktyV----------HR~GRTARAgq~G~a~t 535 (620)
T KOG0350|consen 499 VNDVDNVIN--------YDPPASDKTYV----------HRAGRTARAGQDGYAIT 535 (620)
T ss_pred ccccceEee--------cCCCchhhHHH----------HhhcccccccCCceEEE
Confidence 999999999 87765544444 69998888664 77753
No 92
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.78 E-value=0.00017 Score=74.30 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=82.4
Q ss_pred eeeecc-ChHHHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCH---HHH
Q psy2956 2 QIFATR-RQHLTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ---EEI 74 (251)
Q Consensus 2 ~~sAT~-~~~~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~---~ei 74 (251)
++|||. ....-..+|.+.-.+.+.... ..|...|..... ..+...+.+ .. ..+..|||+++. +.+
T Consensus 271 ~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll-~~-----l~~~~IVFv~t~~~~~~a 342 (1171)
T TIGR01054 271 VSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIV-KK-----LGTGGIVYVSIDYGKEKA 342 (1171)
T ss_pred EEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc--HHHHHHHHH-HH-----cCCCEEEEEeccccHHHH
Confidence 579995 333222455554446665433 345556654322 122222221 11 134689999988 888
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEe----cCcccceeeecc-eEEEE
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS----TNIAETSLTIDG-VVFVI 149 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivs----t~iaetsltI~g-~~lVf 149 (251)
+++.+.|.. .++++..+|+.++...+++|- .+ ..+++++ ||++..+++||+ +.|||
T Consensus 343 ~~l~~~L~~---------~g~~a~~lhg~~~~~~l~~Fr----~G------~~~vLVata~~tdv~aRGIDip~~V~~vI 403 (1171)
T TIGR01054 343 EEIAEFLEN---------HGVKAVAYHATKPKEDYEKFA----EG------EIDVLIGVASYYGTLVRGLDLPERVRYAV 403 (1171)
T ss_pred HHHHHHHHh---------CCceEEEEeCCCCHHHHHHHH----cC------CCCEEEEeccccCcccccCCCCccccEEE
Confidence 888887764 278999999999765555442 23 4568888 599999999999 79999
Q ss_pred eCCcccc
Q psy2956 150 DPGFAKQ 156 (251)
Q Consensus 150 d~G~~~~ 156 (251)
..|.-+.
T Consensus 404 ~~~~P~~ 410 (1171)
T TIGR01054 404 FLGVPKF 410 (1171)
T ss_pred EECCCCE
Confidence 9887654
No 93
>KOG0347|consensus
Probab=97.78 E-value=2.3e-05 Score=72.96 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=56.5
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
.+|--|||.++.+.|..+.-.|. .+ ++-.+++||.|.+..+-+-++..... .--+.+|||+|.++
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~----~L-----~i~p~~LHA~M~QKqRLknLEkF~~~------~~~VLiaTDVAARG 526 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLN----NL-----DIPPLPLHASMIQKQRLKNLEKFKQS------PSGVLIATDVAARG 526 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHh----hc-----CCCCchhhHHHHHHHHHHhHHHHhcC------CCeEEEeehhhhcc
Confidence 37999999999887776655544 22 55678999999876655443222221 23489999999999
Q ss_pred eeecceEEEEe
Q psy2956 140 LTIDGVVFVID 150 (251)
Q Consensus 140 ltI~g~~lVfd 150 (251)
++|||+-+||.
T Consensus 527 LDIp~V~HVIH 537 (731)
T KOG0347|consen 527 LDIPGVQHVIH 537 (731)
T ss_pred CCCCCcceEEE
Confidence 99999999998
No 94
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.69 E-value=0.00044 Score=69.01 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=83.0
Q ss_pred CCCeEEeCCCc------cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCC
Q psy2956 18 NAPLMNVPGRT------HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPE 91 (251)
Q Consensus 18 ~~pvi~i~g~~------~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~ 91 (251)
+-+|+.||.-. +| +..|. ...+.+.+.++.+...|.. ...+|||..+.+..+.+.+.|...
T Consensus 555 ~L~Vv~IPTnrP~~R~D~~-d~vy~--t~~eK~~Ali~~I~~~~~~---grpVLIft~Sve~sE~Ls~~L~~~------- 621 (1025)
T PRK12900 555 KLDVVVIPTNKPIVRKDMD-DLVYK--TRREKYNAIVLKVEELQKK---GQPVLVGTASVEVSETLSRMLRAK------- 621 (1025)
T ss_pred CCcEEECCCCCCcceecCC-CeEec--CHHHHHHHHHHHHHHHhhC---CCCEEEEeCcHHHHHHHHHHHHHc-------
Confidence 46788888642 22 12221 2345666777777666643 456999999998888887777643
Q ss_pred CCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec---ceE-----EEEeCCcccceeeCCcc
Q psy2956 92 AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID---GVV-----FVIDPGFAKQKVYNPRI 163 (251)
Q Consensus 92 ~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~---g~~-----lVfd~G~~~~~~~~~~~ 163 (251)
.+..-.+|+. ...++...-..... .-.+.+|||+|.++++|+ ++. +||.+-.
T Consensus 622 --gI~h~vLnak--q~~REa~Iia~AG~------~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgter---------- 681 (1025)
T PRK12900 622 --RIAHNVLNAK--QHDREAEIVAEAGQ------KGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSER---------- 681 (1025)
T ss_pred --CCCceeecCC--HHHhHHHHHHhcCC------CCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCC----------
Confidence 5666778863 33444333322222 346899999999999986 321 2233211
Q ss_pred ccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 164 RVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 164 ~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
|-+.-...||.||+||.+ ||..
T Consensus 682 --------hes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 682 --------HESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred --------CchHHHHHHHhhhhhcCCCCcce
Confidence 111223579999999977 6765
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.00064 Score=67.23 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=75.7
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCccceeeeeCCC----CchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVEIFYTPE----PERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~----~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
|+.|.. ++.|.+.| +-+|+.||.-. |+.-.-.++ ...+.+.+.+..+.+.|.. ..-+|||..+.+..+.
T Consensus 371 mTGTa~te~~E~~~iY-~l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~---grpVLIft~Si~~se~ 445 (830)
T PRK12904 371 MTGTADTEAEEFREIY-NLDVVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKK---GQPVLVGTVSIEKSEL 445 (830)
T ss_pred cCCCcHHHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhc---CCCEEEEeCcHHHHHH
Confidence 344443 33444444 57788888743 222111111 2345667777777666643 3469999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~ 143 (251)
+.+.|... .+....+||. ...++..+.....+ .-.+.+|||+|.++++|+
T Consensus 446 Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~------~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 446 LSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGR------PGAVTIATNMAGRGTDIK 495 (830)
T ss_pred HHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCC------CceEEEecccccCCcCcc
Confidence 99988753 6778889985 44455444333322 456999999999998873
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.00086 Score=66.52 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=73.8
Q ss_pred CCCeEEeCCCccceeeeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCC
Q psy2956 18 NAPLMNVPGRTHPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGE 94 (251)
Q Consensus 18 ~~pvi~i~g~~~pV~~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~ 94 (251)
+-+|+.||.-.--...-+.+ ......+.+.++.+.+.|.. .--+|||..+.+..+.+.+.|... .
T Consensus 406 ~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~---GrpVLV~t~sv~~se~ls~~L~~~---------g 473 (908)
T PRK13107 406 GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRER---GQPVLVGTVSIEQSELLARLMVKE---------K 473 (908)
T ss_pred CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHc---CCCEEEEeCcHHHHHHHHHHHHHC---------C
Confidence 46788888642111111111 12345667778888888854 345999999999998888877653 6
Q ss_pred eEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 95 LKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 95 l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
+....|||.....+...+......+ ++.+|||+|.++.+|
T Consensus 474 i~~~vLnak~~~~Ea~ii~~Ag~~G--------~VtIATnmAGRGTDI 513 (908)
T PRK13107 474 IPHEVLNAKFHEREAEIVAQAGRTG--------AVTIATNMAGRGTDI 513 (908)
T ss_pred CCeEeccCcccHHHHHHHHhCCCCC--------cEEEecCCcCCCcce
Confidence 7788999999888888777654433 399999999988776
No 97
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00033 Score=64.79 Aligned_cols=104 Identities=29% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEE-----ccCCCChhhHHHhcccCCCCCCCCCccceEEEecCc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIP-----LYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~-----lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~i 135 (251)
..-++||-.-.+-.+++.+.|.+. +.... .+.+- -...|++.+|.........| .-.+.|||.+
T Consensus 366 ~~RvIVFT~yRdTae~i~~~L~~~----~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G------e~nVLVaTSV 434 (542)
T COG1111 366 DSRVIVFTEYRDTAEEIVNFLKKI----GIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKG------EYNVLVATSV 434 (542)
T ss_pred CceEEEEehhHhHHHHHHHHHHhc----CCcce-eEEeeccccccccccCHHHHHHHHHHHhcC------CceEEEEccc
Confidence 456999987766666666665542 32221 12222 23568899999888777776 5569999999
Q ss_pred ccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcc
Q psy2956 136 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193 (251)
Q Consensus 136 aetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c 193 (251)
+|-+++||.+-+|+- |++... .--..||.||+||.++|..
T Consensus 435 gEEGLDIp~vDlVif--------YEpvpS----------eIR~IQR~GRTGR~r~Grv 474 (542)
T COG1111 435 GEEGLDIPEVDLVIF--------YEPVPS----------EIRSIQRKGRTGRKRKGRV 474 (542)
T ss_pred ccccCCCCcccEEEE--------ecCCcH----------HHHHHHhhCccccCCCCeE
Confidence 999999999988886 554321 1135699999999999975
No 98
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00069 Score=64.56 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=78.7
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
..+..++|..+..++++++++|... +++...-||.|+.++++...+..-.+ ..+++|||+.---.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~------~~~iiVAT~AFGMG 293 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLND------EIKVMVATNAFGMG 293 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcC------CCcEEEEeccccCc
Confidence 3667889999999999999999863 78899999999998877765554444 56799999988888
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
++-||+.+|+- |+.......+ -|..|||||-+ |-.|+
T Consensus 294 IdKpdVRfViH--------~~lP~s~EsY----------yQE~GRAGRDG~~a~ai 331 (590)
T COG0514 294 IDKPDVRFVIH--------YDLPGSIESY----------YQETGRAGRDGLPAEAI 331 (590)
T ss_pred cCCCCceEEEE--------ecCCCCHHHH----------HHHHhhccCCCCcceEE
Confidence 88999999998 4433333333 38889998855 34454
No 99
>PRK09401 reverse gyrase; Reviewed
Probab=97.54 E-value=0.00035 Score=72.04 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred CeeeeccChHHH-HHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH---
Q psy2956 1 MQIFATRRQHLT-RQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE--- 73 (251)
Q Consensus 1 ~~~sAT~~~~~~-~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e--- 73 (251)
|+||||+..... ..+|.+.--+.+.... -.|...|.... +..+.....+ .. ..+..|||++....
T Consensus 272 ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll-~~-----l~~~~LIFv~t~~~~~~ 343 (1176)
T PRK09401 272 VVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELV-KR-----LGDGGLIFVPSDKGKEY 343 (1176)
T ss_pred EEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHH-Hh-----cCCCEEEEEecccChHH
Confidence 579999985422 2334333234444432 34555565433 3333322222 11 13468999998665
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEe----cCcccceeeecc-eEEE
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS----TNIAETSLTIDG-VVFV 148 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivs----t~iaetsltI~g-~~lV 148 (251)
++++.+.|... ++++..+|+.+ .....+ |. .+ .-+++|+ ||++..+++||+ +.||
T Consensus 344 ae~l~~~L~~~---------gi~v~~~hg~l-~~~l~~-F~---~G------~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 344 AEELAEYLEDL---------GINAELAISGF-ERKFEK-FE---EG------EVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred HHHHHHHHHHC---------CCcEEEEeCcH-HHHHHH-HH---CC------CCCEEEEecCCCCceeecCCCCcceeEE
Confidence 77777777642 78999999999 333332 33 33 4468888 699999999999 8999
Q ss_pred EeCCcccce
Q psy2956 149 IDPGFAKQK 157 (251)
Q Consensus 149 fd~G~~~~~ 157 (251)
|..|.-+..
T Consensus 404 I~y~vP~~~ 412 (1176)
T PRK09401 404 IFYGVPKFK 412 (1176)
T ss_pred EEeCCCCEE
Confidence 999987643
No 100
>KOG0344|consensus
Probab=97.54 E-value=0.00044 Score=64.84 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=79.4
Q ss_pred CCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceee
Q psy2956 62 GDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 62 g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetslt 141 (251)
--+|+|+-+.+...++.+.|. ..+++.+=..|+..+.......+.....+ ...+.++||+.+++++
T Consensus 388 PP~lIfVQs~eRak~L~~~L~--------~~~~i~v~vIh~e~~~~qrde~~~~FR~g------~IwvLicTdll~RGiD 453 (593)
T KOG0344|consen 388 PPVLIFVQSKERAKQLFEELE--------IYDNINVDVIHGERSQKQRDETMERFRIG------KIWVLICTDLLARGID 453 (593)
T ss_pred CCeEEEEecHHHHHHHHHHhh--------hccCcceeeEecccchhHHHHHHHHHhcc------CeeEEEehhhhhcccc
Confidence 349999999776666665553 23578889999999998888888777776 5678899999999999
Q ss_pred ecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Cccccccce
Q psy2956 142 IDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKCFRYIVV 199 (251)
Q Consensus 142 I~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c~Rl~~i 199 (251)
+-|+-+||+ ||-.. +..+-.+|.||.||.++ |+.|-+|+.
T Consensus 454 f~gvn~VIn--------yD~p~----------s~~syihrIGRtgRag~~g~Aitfytd 494 (593)
T KOG0344|consen 454 FKGVNLVIN--------YDFPQ----------SDLSYIHRIGRTGRAGRSGKAITFYTD 494 (593)
T ss_pred ccCcceEEe--------cCCCc----------hhHHHHHHhhccCCCCCCcceEEEecc
Confidence 999999999 44221 22233468899988775 777666654
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.00085 Score=63.53 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=39.1
Q ss_pred CCeEEEEccCCCChhhH--HHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEE
Q psy2956 93 GELKCIPLYSTLPPNLQ--QRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVI 149 (251)
Q Consensus 93 ~~l~vi~lsatl~~~~~--~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVf 149 (251)
|+.++..+|+.+...+. ++.++....+ .-.++++|++++..+++|++.+|+
T Consensus 283 p~~~v~~~d~d~~~~~~~~~~~l~~f~~g------~~~ILVgT~~i~kG~d~~~v~lV~ 335 (505)
T TIGR00595 283 PGARIARIDSDTTSRKGAHEALLNQFANG------KADILIGTQMIAKGHHFPNVTLVG 335 (505)
T ss_pred CCCcEEEEecccccCccHHHHHHHHHhcC------CCCEEEeCcccccCCCCCcccEEE
Confidence 57889999998765432 5555555544 457999999999999999988874
No 102
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=0.00056 Score=66.96 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|||....+.++++.+.|. +-.+++.++..++.+.|+....+. ..+++++|+++.+++
T Consensus 496 g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~~~-----~i~vLv~SkVgdeGI 556 (732)
T TIGR00603 496 GDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQHNP-----KVNTIFLSKVGDTSI 556 (732)
T ss_pred CCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHhCC-----CccEEEEeccccccc
Confidence 5579999988776666555441 234789999999999987765321 346889999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcc-----ccccceeccccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC-----FRYIVVVSTNIAET 207 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c-----~Rl~~i~aTniaEt 207 (251)
++|++-+||.- ++. +=|.....||.||++|..+|+. =.+|+.++++=.|.
T Consensus 557 DlP~a~vvI~~--------s~~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 557 DLPEANVLIQI--------SSH---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CCCCCCEEEEe--------CCC---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 99998888872 110 0134466799999999887652 23466777665554
No 103
>PRK14701 reverse gyrase; Provisional
Probab=97.36 E-value=0.00085 Score=71.14 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=80.6
Q ss_pred CeeeeccCh-HHHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH--
Q psy2956 1 MQIFATRRQ-HLTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI-- 74 (251)
Q Consensus 1 ~~~sAT~~~-~~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei-- 74 (251)
|.+|||+.. .....+|.+.-.+.+.... ..+...|......+. ....+. +..+ ....|||+++...+
T Consensus 273 l~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~l-l~~~-----g~~gIVF~~t~~~~e~ 345 (1638)
T PRK14701 273 IVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVREL-LKKL-----GKGGLIFVPIDEGAEK 345 (1638)
T ss_pred EEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHH-HHhC-----CCCeEEEEeccccchH
Confidence 358999984 2334566555556665443 234455543222221 222222 1211 34689999987654
Q ss_pred -HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEec----Ccccceeeecc-eEEE
Q psy2956 75 -EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST----NIAETSLTIDG-VVFV 148 (251)
Q Consensus 75 -~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst----~iaetsltI~g-~~lV 148 (251)
+++++.|.. .++++..+|+. +.+.+.....+ .-.++|+| |++..++++|+ +.||
T Consensus 346 ae~la~~L~~---------~Gi~a~~~h~~-----R~~~l~~F~~G------~~~VLVaT~s~~gvaaRGIDiP~~Vryv 405 (1638)
T PRK14701 346 AEEIEKYLLE---------DGFKIELVSAK-----NKKGFDLFEEG------EIDYLIGVATYYGTLVRGLDLPERIRFA 405 (1638)
T ss_pred HHHHHHHHHH---------CCCeEEEecch-----HHHHHHHHHcC------CCCEEEEecCCCCeeEecCccCCccCEE
Confidence 666666664 37999999985 33333333334 45699999 58999999999 8999
Q ss_pred EeCCcccce
Q psy2956 149 IDPGFAKQK 157 (251)
Q Consensus 149 fd~G~~~~~ 157 (251)
|.-|.-+..
T Consensus 406 i~~~~Pk~~ 414 (1638)
T PRK14701 406 VFYGVPKFR 414 (1638)
T ss_pred EEeCCCCCC
Confidence 998887643
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.32 E-value=0.0015 Score=64.69 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=65.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcc------cCCCCCCCCCccceEEEecC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFE------AAPANKPNGGIGRKVVVSTN 134 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~------~~p~~~~~g~~~rkiivst~ 134 (251)
.+.+||=+++.+...++++.|++. ++ +++.+||.+....+++--+ .-. .-.++|+|-
T Consensus 440 ~~kvlvI~NTV~~Aie~Y~~Lk~~--------~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~--------~~~IvVaTQ 502 (733)
T COG1203 440 GKKVLVIVNTVDRAIELYEKLKEK--------GP-KVLLLHSRFTLKDREEKERELKKLFKQN--------EGFIVVATQ 502 (733)
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc--------CC-CEEEEecccchhhHHHHHHHHHHHHhcc--------CCeEEEEee
Confidence 678999999999999999998753 23 8999999998776665433 111 346899999
Q ss_pred cccceeeecceEEEEeCCcccceeeCCccccccceEEEccc-chHHHHhcccCCCC
Q psy2956 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISK-ASAQQRAGRAGRTR 189 (251)
Q Consensus 135 iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~-~~a~qR~gragr~~ 189 (251)
+.|.+++|+=+.++=+ ++. .+-.||+||..|-+
T Consensus 503 VIEagvDidfd~mITe----------------------~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 503 VIEAGVDIDFDVLITE----------------------LAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred EEEEEeccccCeeeec----------------------CCCHHHHHHHHHHHhhcc
Confidence 9999998853333322 222 24469999998876
No 105
>KOG0346|consensus
Probab=97.29 E-value=0.0015 Score=59.68 Aligned_cols=116 Identities=19% Similarity=0.303 Sum_probs=74.1
Q ss_pred CeeeeccCh--HHHHHhcC-CCCeEEeCCCccc----eeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQ--HLTRQYFD-NAPLMNVPGRTHP----VEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~--~~~~~yf~-~~pvi~i~g~~~p----V~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
++||||++. ..++..|- |+-++.+....-| +..||....+.|.+..++. ++.+.. ..|-+|+|++.
T Consensus 205 ~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllya-llKL~L---I~gKsliFVNt--- 277 (569)
T KOG0346|consen 205 FLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYA-LLKLRL---IRGKSLIFVNT--- 277 (569)
T ss_pred eeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHH-HHHHHH---hcCceEEEEec---
Confidence 479999983 34445554 4445666654433 5677777777776654442 233332 47889999987
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~i 135 (251)
|+.+++. .-.++.. .++-.+|-+.|+...+.-+.+....+ .-.++++||-
T Consensus 278 Idr~YrL-kLfLeqF-----GiksciLNseLP~NSR~Hii~QFNkG------~YdivIAtD~ 327 (569)
T KOG0346|consen 278 IDRCYRL-KLFLEQF-----GIKSCILNSELPANSRCHIIEQFNKG------LYDIVIATDD 327 (569)
T ss_pred hhhhHHH-HHHHHHh-----CcHhhhhcccccccchhhHHHHhhCc------ceeEEEEccC
Confidence 5555543 2122222 67778899999988887776666665 5678899884
No 106
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0067 Score=54.01 Aligned_cols=152 Identities=23% Similarity=0.359 Sum_probs=89.0
Q ss_pred CeeeeccChHHHHHhcC-CCCeEEeCCCc----cceeee-eCCC----CchhHHHHHHHHHHHHhhccccCCCEEEecCC
Q psy2956 1 MQIFATRRQHLTRQYFD-NAPLMNVPGRT----HPVEIF-YTPE----PERDYLEAAIRTVVQIHMCEEVEGDVLLFLTG 70 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~-~~pvi~i~g~~----~pV~~~-y~~~----~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg 70 (251)
++++||-..++-++-.. +-..+.+|.|- -||--+ |... -..+.+...+..-++-|..+ .--+|+|+|.
T Consensus 237 IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~--~~P~liF~p~ 314 (441)
T COG4098 237 IYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKT--GRPVLIFFPE 314 (441)
T ss_pred EEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhc--CCcEEEEecc
Confidence 46889987666665443 34457888663 222211 1110 01122222333333434332 4459999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCC-ChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecce-EEE
Q psy2956 71 QEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTL-PPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGV-VFV 148 (251)
Q Consensus 71 ~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl-~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~-~lV 148 (251)
.+-.+++.+.|.+. .+..++...||.- .-.+.-..|.+ + .-+++++|.|.|+++|.|++ ++|
T Consensus 315 I~~~eq~a~~lk~~-------~~~~~i~~Vhs~d~~R~EkV~~fR~---G------~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 315 IETMEQVAAALKKK-------LPKETIASVHSEDQHRKEKVEAFRD---G------KITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred hHHHHHHHHHHHhh-------CCccceeeeeccCccHHHHHHHHHc---C------ceEEEEEeehhhcccccccceEEE
Confidence 99999988888643 2456655566542 22223233443 3 56899999999999999985 456
Q ss_pred EeCCcccceeeCCccccccceEEEc-ccchHHHHhcccCCC
Q psy2956 149 IDPGFAKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRT 188 (251)
Q Consensus 149 fd~G~~~~~~~~~~~~~~~l~~~pi-s~~~a~qR~gragr~ 188 (251)
+++- .++ ++++-.|-+||+||.
T Consensus 379 lgae------------------h~vfTesaLVQIaGRvGRs 401 (441)
T COG4098 379 LGAE------------------HRVFTESALVQIAGRVGRS 401 (441)
T ss_pred ecCC------------------cccccHHHHHHHhhhccCC
Confidence 6531 122 234446889999994
No 107
>KOG0354|consensus
Probab=97.20 E-value=0.0023 Score=62.23 Aligned_cols=126 Identities=23% Similarity=0.289 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEc----cCCCChhhHHHhcccCC
Q psy2956 42 DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPL----YSTLPPNLQQRIFEAAP 117 (251)
Q Consensus 42 ~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~l----satl~~~~~~~~f~~~p 117 (251)
..++..++.+.+... ....--+++|.-..+.++.+...|.+.. .++- ++.+-+=-- +..|+..+|........
T Consensus 395 pkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l~~~l~~~~-~~~i-r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 395 PKLEKLVEILVEQFE-QNPDSRTIIFVETRESALALKKWLLQLH-ELGI-KAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred hhHHHHHHHHHHHhh-cCCCccEEEEEehHHHHHHHHHHHHhhh-hccc-ccceeeeccccccccccCHHHHHHHHHHHh
Confidence 345555554444433 3345668999999999999888887521 1110 122222211 24577788888877777
Q ss_pred CCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccc
Q psy2956 118 ANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 195 (251)
Q Consensus 118 ~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~R 195 (251)
.| .-+++|||.+||-+++|+..-+||- ||.....- ...||.|| ||...|+|+-
T Consensus 472 ~G------~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpI----------rmIQrrGR-gRa~ns~~vl 524 (746)
T KOG0354|consen 472 DG------EINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPI----------RMVQRRGR-GRARNSKCVL 524 (746)
T ss_pred CC------CccEEEEecchhccCCcccccEEEE--------ecCCccHH----------HHHHHhcc-ccccCCeEEE
Confidence 77 6779999999999999998888887 44322211 34599999 9999999854
No 108
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.10 E-value=0.0024 Score=64.57 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|||....+..+.+.+.|... .++++..+|+.++..++.+..+...... .+-+++++|+++..++
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~----~~~~VLIsTdvgseGl 560 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEE----DGAQVLLCSEIGSEGR 560 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCC----CCccEEEechhhccCC
Confidence 456999999999999988888532 3688999999999988776654332210 0356899999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
.++.+.+||+ ||. |.++..-.||.||++|-+.
T Consensus 561 Nlq~a~~VIn--------fDl----------P~nP~~~eQRIGR~~RiGQ 592 (956)
T PRK04914 561 NFQFASHLVL--------FDL----------PFNPDLLEQRIGRLDRIGQ 592 (956)
T ss_pred CcccccEEEE--------ecC----------CCCHHHHHHHhcccccCCC
Confidence 9999999988 332 3445556799999998664
No 109
>KOG0951|consensus
Probab=97.08 E-value=0.0066 Score=61.79 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=108.7
Q ss_pred eeeeccCh-HHHHHhcCCC-CeEEeCC---CccceeeeeCCCCchh---HHH----HHHHHHHHHhhccccCCCEEEecC
Q psy2956 2 QIFATRRQ-HLTRQYFDNA-PLMNVPG---RTHPVEIFYTPEPERD---YLE----AAIRTVVQIHMCEEVEGDVLLFLT 69 (251)
Q Consensus 2 ~~sAT~~~-~~~~~yf~~~-pvi~i~g---~~~pV~~~y~~~~~~~---~~~----~~~~~v~~i~~~~~~~g~iLvFLp 69 (251)
-+|||+.. +....|..-. +-+..-+ |.-|.+..|.-..+.+ .+. ++++.+++.. ..+.+|||+-
T Consensus 479 GLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a----gk~qVLVFVH 554 (1674)
T KOG0951|consen 479 GLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA----GKNQVLVFVH 554 (1674)
T ss_pred eecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhC----CCCcEEEEEE
Confidence 47999873 2222322211 1222222 3345566665433322 222 3344444422 2478999999
Q ss_pred CHHHHHHHHHHHHHh----------hhh------------cCCCCCCe------EEEEccCCCChhhHH---HhcccCCC
Q psy2956 70 GQEEIEEACKRIKKE----------IDN------------LGPEAGEL------KCIPLYSTLPPNLQQ---RIFEAAPA 118 (251)
Q Consensus 70 g~~ei~~~~~~L~~~----------~~~------------l~~~~~~l------~vi~lsatl~~~~~~---~~f~~~p~ 118 (251)
+..|-.+..+.++.. ++. -..++++| .+-+-||.|+-.++. +.|.+
T Consensus 555 sRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--- 631 (1674)
T KOG0951|consen 555 SRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--- 631 (1674)
T ss_pred echHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc---
Confidence 999988877776521 110 01223343 355679999876654 34543
Q ss_pred CCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 119 NKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 119 ~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
+ .+++.++|.-.+-.+..|+.+.+|-- ..+|+|..+. -.++++-...|+.|||||++-..|-+ .
T Consensus 632 g------~iqvlvstatlawgvnlpahtViikg----tqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~ge--g 695 (1674)
T KOG0951|consen 632 G------HIQVLVSTATLAWGVNLPAHTVIIKG----TQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGE--G 695 (1674)
T ss_pred C------ceeEEEeehhhhhhcCCCcceEEecC----ccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCc--e
Confidence 3 67899999887777778887777652 3467775442 34567778899999999998766655 5
Q ss_pred eeccccccc
Q psy2956 199 VVSTNIAET 207 (251)
Q Consensus 199 i~aTniaEt 207 (251)
++.|+=+|-
T Consensus 696 iiit~~se~ 704 (1674)
T KOG0951|consen 696 IIITDHSEL 704 (1674)
T ss_pred eeccCchHh
Confidence 666766653
No 110
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.97 E-value=0.003 Score=60.70 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=97.9
Q ss_pred CeeeeccChHHHH-HhcCCCC---eEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH---
Q psy2956 1 MQIFATRRQHLTR-QYFDNAP---LMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE--- 73 (251)
Q Consensus 1 ~~~sAT~~~~~~~-~yf~~~p---vi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e--- 73 (251)
++||||-=...++ ..|++-- +-..|...-||++.+.+....+.+..- +.+-.. + ...+-+-.|=.+|
T Consensus 415 LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~---i~~ei~-~--GrQaY~VcPLIeESE~ 488 (677)
T COG1200 415 LVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYER---IREEIA-K--GRQAYVVCPLIEESEK 488 (677)
T ss_pred EEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHH---HHHHHH-c--CCEEEEEecccccccc
Confidence 4789996655554 6777643 345665558999999887655544332 222111 0 2234455554333
Q ss_pred -----HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEE
Q psy2956 74 -----IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFV 148 (251)
Q Consensus 74 -----i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lV 148 (251)
+++.++.|.. ..+++++-.+|+.|..++...++.....+ .-.+.|||.+.|-.+++|+..+.
T Consensus 489 l~l~~a~~~~~~L~~-------~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~------e~~ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 489 LELQAAEELYEELKS-------FLPELKVGLVHGRMKPAEKDAVMEAFKEG------EIDILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred chhhhHHHHHHHHHH-------HcccceeEEEecCCChHHHHHHHHHHHcC------CCcEEEEeeEEEecccCCCCeEE
Confidence 3334444442 23689999999999999988887776666 55699999999999999987654
Q ss_pred EeCCcccceeeCC-ccccccceEEEcccchHHHHhcccCCCC-CCccc
Q psy2956 149 IDPGFAKQKVYNP-RIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 194 (251)
Q Consensus 149 fd~G~~~~~~~~~-~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~ 194 (251)
+= +|+ +-+...|. |-.||+||.. +..|+
T Consensus 556 VI--------e~AERFGLaQLH----------QLRGRVGRG~~qSyC~ 585 (677)
T COG1200 556 VI--------ENAERFGLAQLH----------QLRGRVGRGDLQSYCV 585 (677)
T ss_pred EE--------echhhhhHHHHH----------HhccccCCCCcceEEE
Confidence 42 111 22333333 7779999954 34453
No 111
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.91 E-value=0.01 Score=58.30 Aligned_cols=51 Identities=8% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCeEEEEccCCCCh--hhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEE
Q psy2956 93 GELKCIPLYSTLPP--NLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVI 149 (251)
Q Consensus 93 ~~l~vi~lsatl~~--~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVf 149 (251)
|+.++..+|+++.. ++.++.+.....+ ...++++|+++..++++|++.+|+
T Consensus 451 p~~~v~~~~~d~~~~~~~~~~~l~~f~~g------~~~ILVgT~~iakG~d~p~v~lV~ 503 (679)
T PRK05580 451 PEARILRIDRDTTRRKGALEQLLAQFARG------EADILIGTQMLAKGHDFPNVTLVG 503 (679)
T ss_pred CCCcEEEEeccccccchhHHHHHHHHhcC------CCCEEEEChhhccCCCCCCcCEEE
Confidence 57789999998763 4456666555554 456999999999999999998884
No 112
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.82 E-value=0.019 Score=57.06 Aligned_cols=167 Identities=20% Similarity=0.261 Sum_probs=96.5
Q ss_pred eeeeccC-hHHHHHhcCCCCeEEeCCCccce----------eeeeCCCCc----hhHHHHHHHHHHHHhhccccCCCEEE
Q psy2956 2 QIFATRR-QHLTRQYFDNAPLMNVPGRTHPV----------EIFYTPEPE----RDYLEAAIRTVVQIHMCEEVEGDVLL 66 (251)
Q Consensus 2 ~~sAT~~-~~~~~~yf~~~pvi~i~g~~~pV----------~~~y~~~~~----~~~~~~~~~~v~~i~~~~~~~g~iLv 66 (251)
-+|||+. ...+.+|.+.-++ .+.-+|+ ..++..... ...-..+...+..-+. ..|.+||
T Consensus 185 gLSATlpN~~evA~wL~a~~~---~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~---~~~qvLv 258 (766)
T COG1204 185 GLSATLPNAEEVADWLNAKLV---ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA---EGGQVLV 258 (766)
T ss_pred EEeeecCCHHHHHHHhCCccc---ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh---cCCeEEE
Confidence 4799997 7888898875544 2222222 222211111 1122333444444442 3789999
Q ss_pred ecCCHHHHHHHHHHHHHhhhhcCCC---------CCCeE-------------------EEEccCCCChhhHHHhcccCCC
Q psy2956 67 FLTGQEEIEEACKRIKKEIDNLGPE---------AGELK-------------------CIPLYSTLPPNLQQRIFEAAPA 118 (251)
Q Consensus 67 FLpg~~ei~~~~~~L~~~~~~l~~~---------~~~l~-------------------vi~lsatl~~~~~~~~f~~~p~ 118 (251)
|.++..+-....+.|...+.....+ ..++. +-.-||.|+.+.++-+=...+.
T Consensus 259 Fv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~ 338 (766)
T COG1204 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK 338 (766)
T ss_pred EEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc
Confidence 9999999888888877422211100 00111 1123667776666544333344
Q ss_pred CCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 119 NKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 119 ~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
+ .-+++++|.-....+..|....+|- ....|++. .. ..++....-.|..|||||++
T Consensus 339 g------~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~---~g--~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 339 G------KIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPK---GG--IVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred C------CceEEEechHHhhhcCCcceEEEEe----eeEEEcCC---CC--eEECchhhHhhccCcCCCCC
Confidence 4 6789999987666677777666664 23345551 11 56677778899999999976
No 113
>KOG0337|consensus
Probab=96.81 E-value=0.0043 Score=56.43 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=79.8
Q ss_pred CeeeeccChH--HHHHhcCCCCe---EEeCCCc-cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQH--LTRQYFDNAPL---MNVPGRT-HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~--~~~~yf~~~pv---i~i~g~~-~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+... .|.+---..|+ +.|+.+. -..++.|......+...+....+-.... +..-+||.+....+
T Consensus 199 llfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~----~~~t~vf~~tk~hv 274 (529)
T KOG0337|consen 199 LLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK----DKQTIVFVATKHHV 274 (529)
T ss_pred EEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc----ccceeEEecccchH
Confidence 4799999876 44443222333 2344432 3334444433334443333322222111 33689999999988
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEe
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVID 150 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd 150 (251)
+.+.+.|... +.-.--.+++||.+.++.-+.+.... .-.+.+.||+|...+.||+.--|++
T Consensus 275 e~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~------k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 275 EYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGR------KTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred HHHHHHHHhc---------CCCccccccccChHhhhhccccccCC------ccceEEEehhhhccCCCcccccccc
Confidence 8877777642 34455578999998888555544433 3346789999999999988777776
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.81 E-value=0.024 Score=55.43 Aligned_cols=165 Identities=21% Similarity=0.255 Sum_probs=90.0
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCccceeeeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEA 77 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~ 77 (251)
|+.|.. ++.|.+.| +-+|+.||.-.--+..-+.+ ......+.+.++.+.+.|.. .--|||...+.++-+.+
T Consensus 368 MTGTa~t~~~Ef~~iY-~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~---GrPVLVgt~sI~~SE~l 443 (764)
T PRK12326 368 MTGTAVAAGEQLRQFY-DLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHET---GQPVLVGTHDVAESEEL 443 (764)
T ss_pred ecCCChhHHHHHHHHh-CCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHH
Confidence 344443 44555544 46788888752111121111 12345677788888888854 33599999999999988
Q ss_pred HHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee--cceEEEEeCCccc
Q psy2956 78 CKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI--DGVVFVIDPGFAK 155 (251)
Q Consensus 78 ~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI--~g~~lVfd~G~~~ 155 (251)
.+.|.+. .+..-+|.|.-...+ ..+-..+. . .-.|.+|||.|-+.-+| .|.. ..++
T Consensus 444 s~~L~~~---------gI~h~vLNAk~~~~E-A~IIa~AG------~-~gaVTIATNMAGRGTDIkLg~~~-----~~~~ 501 (764)
T PRK12326 444 AERLRAA---------GVPAVVLNAKNDAEE-ARIIAEAG------K-YGAVTVSTQMAGRGTDIRLGGSD-----EADR 501 (764)
T ss_pred HHHHHhC---------CCcceeeccCchHhH-HHHHHhcC------C-CCcEEEEecCCCCccCeecCCCc-----ccch
Confidence 8888753 455566666533222 22222221 1 23588999999877655 1100 0000
Q ss_pred ceeeCCccccccceEE--Ecc--cchHHHHhcccCCCC-CCccccccc
Q psy2956 156 QKVYNPRIRVESLLVS--PIS--KASAQQRAGRAGRTR-PGKCFRYIV 198 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~--pis--~~~a~qR~gragr~~-~G~c~Rl~~ 198 (251)
..+ .....|.+. -.| .--..|-.||+||.+ ||.+ |.++
T Consensus 502 ~~V----~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss-~f~l 544 (764)
T PRK12326 502 DRV----AELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSS-VFFV 544 (764)
T ss_pred HHH----HHcCCcEEEeccCCchHHHHHHHhcccccCCCCCce-eEEE
Confidence 000 012223322 122 234578889999988 5654 5443
No 115
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.67 E-value=0.0048 Score=61.90 Aligned_cols=103 Identities=24% Similarity=0.242 Sum_probs=74.9
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
..|||.-+...++.+.......+...+ ..--.++...++.+..++..++-.....+ .-+.+++||..|..+.|
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g------~~~~~~st~Alelgidi 380 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEG------ELLGVIATNALELGIDI 380 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcC------CccEEecchhhhhceee
Confidence 489999999988887654444333222 11234577888999999988776655555 45689999999999999
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
-++--|+..|+-.. +-.+..||+||+||..
T Consensus 381 G~ldavi~~g~P~~-----------------s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 381 GSLDAVIAYGYPGV-----------------SVLSFRQRAGRAGRRG 410 (851)
T ss_pred hhhhhHhhcCCCCc-----------------hHHHHHHhhhhccCCC
Confidence 88888888775210 3346679999999977
No 116
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.47 E-value=0.051 Score=54.10 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=83.1
Q ss_pred HHHhcCCCCeEEeCCCcccee-eeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhh
Q psy2956 12 TRQYFDNAPLMNVPGRTHPVE-IFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDN 87 (251)
Q Consensus 12 ~~~yf~~~pvi~i~g~~~pV~-~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~ 87 (251)
|.+.| +-+|+.||.-. |+. .-+.+ ......+.+.++.+...|.. .--|||...+.+.-+.+.+.|...
T Consensus 378 f~~iY-~l~Vv~IPTnk-P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~---gqPVLVgT~SIe~SE~ls~~L~~~--- 449 (925)
T PRK12903 378 FIDIY-NMRVNVVPTNK-PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK---GQPILIGTAQVEDSETLHELLLEA--- 449 (925)
T ss_pred HHHHh-CCCEEECCCCC-CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc---CCCEEEEeCcHHHHHHHHHHHHHC---
Confidence 44433 46788888742 222 21111 12345667777778778753 345999999999988888888753
Q ss_pred cCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec--------ceEEEEeCCcccceee
Q psy2956 88 LGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID--------GVVFVIDPGFAKQKVY 159 (251)
Q Consensus 88 l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~--------g~~lVfd~G~~~~~~~ 159 (251)
.+..-+|.|.-...+-. +...+. . .-.+.+|||.|-++-+|. |=-+||-+...
T Consensus 450 ------gi~h~vLNAk~~e~EA~-IIa~AG------~-~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerh----- 510 (925)
T PRK12903 450 ------NIPHTVLNAKQNAREAE-IIAKAG------Q-KGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKA----- 510 (925)
T ss_pred ------CCCceeecccchhhHHH-HHHhCC------C-CCeEEEecccccCCcCccCchhHHHcCCcEEEecccC-----
Confidence 34444455542222222 222221 1 224889999998887662 22344443221
Q ss_pred CCccccccceEEEcccchHHHHhcccCCCC-CCccccccc
Q psy2956 160 NPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYIV 198 (251)
Q Consensus 160 ~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~~ 198 (251)
-|.--..|-.||+||.+ ||.+ |.|+
T Consensus 511 -------------eSrRIDnQLrGRaGRQGDpGss-~f~l 536 (925)
T PRK12903 511 -------------ESRRIDNQLRGRSGRQGDVGES-RFFI 536 (925)
T ss_pred -------------chHHHHHHHhcccccCCCCCcc-eEEE
Confidence 12223568889999988 5654 4443
No 117
>PRK01172 ski2-like helicase; Provisional
Probab=96.44 E-value=0.0021 Score=63.05 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=35.9
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+++.+||++++.++.+|+..+||+. ...|+. ....|+|.++..||+
T Consensus 312 i~VLvaT~~la~Gvnipa~~VII~~----~~~~~~------~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 312 IKVIVATPTLAAGVNLPARLVIVRD----ITRYGN------GGIRYLSNMEIKQMI 357 (674)
T ss_pred CeEEEecchhhccCCCcceEEEEcC----ceEeCC------CCceeCCHHHHHHHh
Confidence 4799999999999999999998872 234432 234679999999984
No 118
>KOG0349|consensus
Probab=96.29 E-value=0.012 Score=53.89 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=62.7
Q ss_pred CCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceee
Q psy2956 62 GDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 62 g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetslt 141 (251)
...++|.-...+.+.+.+.+.+. .-..+..+.+|.+.-+++++.-.+....+ ..++.++||+|.+.++
T Consensus 506 dkaiifcrtk~dcDnLer~~~qk------gg~~~scvclhgDrkP~Erk~nle~Fkk~------dvkflictdvaargld 573 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQK------GGKHYSCVCLHGDRKPDERKANLESFKKF------DVKFLICTDVAARGLD 573 (725)
T ss_pred CceEEEEeccccchHHHHHHHHc------CCccceeEEEecCCChhHHHHHHHhhhhc------CeEEEEEehhhhcccc
Confidence 45778999998888877666542 22478899999999777766655555555 5689999999999999
Q ss_pred ecceEEEEeCCc
Q psy2956 142 IDGVVFVIDPGF 153 (251)
Q Consensus 142 I~g~~lVfd~G~ 153 (251)
|.|+.|+|+--+
T Consensus 574 i~g~p~~invtl 585 (725)
T KOG0349|consen 574 ITGLPFMINVTL 585 (725)
T ss_pred ccCCceEEEEec
Confidence 999999998644
No 119
>KOG0953|consensus
Probab=96.19 E-value=0.032 Score=52.62 Aligned_cols=104 Identities=25% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChh---hHHHhcccCCCCCCCCCccceEEEecCccc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPN---LQQRIFEAAPANKPNGGIGRKVVVSTNIAE 137 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~---~~~~~f~~~p~~~~~g~~~rkiivst~iae 137 (251)
+||.+|=+. ..+|-.+...+++. +..++-+.|++|+++ .|.+-|++... .-++.|+||...
T Consensus 357 ~GDCvV~FS-kk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~-------e~dvlVAsDAIG 420 (700)
T KOG0953|consen 357 PGDCVVAFS-KKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPSN-------ECDVLVASDAIG 420 (700)
T ss_pred CCCeEEEee-hhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCCC-------ccceEEeecccc
Confidence 678777654 56777777777653 466788999999986 46777886443 467999999877
Q ss_pred ceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 138 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 138 tsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
-++.+.=.+.||-+-. ....-.+.++..+++.|=+|||||.+.
T Consensus 421 MGLNL~IrRiiF~sl~----------Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 421 MGLNLNIRRIIFYSLI----------KYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred cccccceeEEEEeecc----------cCCcccceeccHHHHHHHhhccccccc
Confidence 7766644556665421 222445678888899999999999753
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.86 E-value=0.14 Score=51.63 Aligned_cols=137 Identities=9% Similarity=0.101 Sum_probs=77.6
Q ss_pred CeeeeccCh----HHHHHhcCC--CCeEEeCCCccce---eeeeCCC--------CchhHHHHHHHHHHHHhhccccCCC
Q psy2956 1 MQIFATRRQ----HLTRQYFDN--APLMNVPGRTHPV---EIFYTPE--------PERDYLEAAIRTVVQIHMCEEVEGD 63 (251)
Q Consensus 1 ~~~sAT~~~----~~~~~yf~~--~pvi~i~g~~~pV---~~~y~~~--------~~~~~~~~~~~~v~~i~~~~~~~g~ 63 (251)
+++|||+.. +-|.+.+|= .....+....|+- ...|.+. ...+|.+.+.+.+.++... .+|.
T Consensus 599 il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~--~~g~ 676 (850)
T TIGR01407 599 IFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI--TSPK 676 (850)
T ss_pred EEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh--cCCC
Confidence 479999973 444454552 2223332223441 1122221 2245666666666666543 3789
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec
Q psy2956 64 VLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143 (251)
Q Consensus 64 iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~ 143 (251)
+|||+|+.+.++.+++.|..... ..+..++.-...-+.+...+-|.. + ...++++|+..--+++++
T Consensus 677 ~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~q~~~~~r~~ll~~F~~---~------~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 677 ILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLAQGINGSRAKIKKRFNN---G------EKAILLGTSSFWEGVDFP 742 (850)
T ss_pred EEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEecCCCccHHHHHHHHHh---C------CCeEEEEcceeecccccC
Confidence 99999999999999998864211 113333332212233333334443 2 456889998877788888
Q ss_pred ceE--EEEeCCc
Q psy2956 144 GVV--FVIDPGF 153 (251)
Q Consensus 144 g~~--lVfd~G~ 153 (251)
|+. .||-+|+
T Consensus 743 g~~l~~viI~~L 754 (850)
T TIGR01407 743 GNGLVCLVIPRL 754 (850)
T ss_pred CCceEEEEEeCC
Confidence 764 5555554
No 121
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=95.66 E-value=0.0071 Score=58.65 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.4
Q ss_pred ccceeccccccceeecCceEEEEeCCC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
..+++||++++..|.+|+|++||+.++
T Consensus 287 ~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 287 LQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred CCEEEEechhhccCCCCCcCEEEEeCC
Confidence 368999999999999999999998665
No 122
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.61 E-value=0.091 Score=54.42 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=69.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChh-hHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPN-LQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~-~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
+|..|||..+.+..+.+.+.|.+..+...+..+.-.+..+++..+.. ..-+-|.. +. ..++++++++..|+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~---~~-----~p~IlVsvdmL~TG 769 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKN---ER-----LPNIVVTVDLLTTG 769 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhC---CC-----CCeEEEEecccccC
Confidence 57899999999999888888876654432222233444566655422 11122332 11 23688999999999
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEc-ccchHHHHhcccCCCCC--Ccc
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRTRP--GKC 193 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pi-s~~~a~qR~gragr~~~--G~c 193 (251)
+++|.+..|+.- . |. |...-.|+.||+.|..| ||-
T Consensus 770 ~DvP~v~~vVf~--------r-----------pvkS~~lf~QmIGRgtR~~~~~~K~ 807 (1123)
T PRK11448 770 IDVPSICNLVFL--------R-----------RVRSRILYEQMLGRATRLCPEIGKT 807 (1123)
T ss_pred CCcccccEEEEe--------c-----------CCCCHHHHHHHHhhhccCCccCCCc
Confidence 999998877662 1 12 22233699999999988 563
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.57 E-value=0.2 Score=50.44 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=82.6
Q ss_pred HHHHhcCCCCeEEeCCCc------cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHh
Q psy2956 11 LTRQYFDNAPLMNVPGRT------HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKE 84 (251)
Q Consensus 11 ~~~~yf~~~pvi~i~g~~------~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~ 84 (251)
.|.+.| +.+|+.||... +|-.+ |. .....+.+.+..+.+.|... --|||--.+.+.-+.+...|...
T Consensus 519 Ef~~iY-~l~v~~iPt~kp~~r~d~~d~i-y~--t~~~k~~ai~~ei~~~~~~g---rPvLigt~si~~se~ls~~L~~~ 591 (970)
T PRK12899 519 EFKEIY-NLYVLQVPTFKPCLRIDHNDEF-YM--TEREKYHAIVAEIASIHRKG---NPILIGTESVEVSEKLSRILRQN 591 (970)
T ss_pred HHHHHh-CCCEEECCCCCCceeeeCCCcE-ec--CHHHHHHHHHHHHHHHHhCC---CCEEEEeCcHHHHHHHHHHHHHc
Confidence 344444 46788888642 22222 21 23466777888888888643 34999999887776666666542
Q ss_pred hhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec--------ceEEEEeCCcccc
Q psy2956 85 IDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID--------GVVFVIDPGFAKQ 156 (251)
Q Consensus 85 ~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~--------g~~lVfd~G~~~~ 156 (251)
.+..-+|.|.-...+-. +-..+. . .-.+.+|||.|-++-+|. |=-+||-+..
T Consensus 592 ---------gi~h~vLNak~~~~Ea~-iia~AG------~-~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer--- 651 (970)
T PRK12899 592 ---------RIEHTVLNAKNHAQEAE-IIAGAG------K-LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSR--- 651 (970)
T ss_pred ---------CCcceecccchhhhHHH-HHHhcC------C-CCcEEEeeccccCCcccccCchHHhcCCcEEEeecc---
Confidence 44445555542222222 222211 1 235889999998876661 3334444322
Q ss_pred eeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccccc
Q psy2956 157 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYIV 198 (251)
Q Consensus 157 ~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~~ 198 (251)
+-|.--..|-.||+||.+ ||.+ +.++
T Consensus 652 ---------------~es~Rid~Ql~GRagRQGdpGss-~f~l 678 (970)
T PRK12899 652 ---------------HQSRRIDRQLRGRCARLGDPGAA-KFFL 678 (970)
T ss_pred ---------------CchHHHHHHHhcccccCCCCCce-eEEE
Confidence 112234567889999988 5664 4444
No 124
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.99 E-value=0.16 Score=49.71 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=88.4
Q ss_pred CeeeeccC-hHHHHHhcCCCC------eEEeCCCccceee---eeCCC----Cc-hhHHHHHHHHHHHHhhccccCCCEE
Q psy2956 1 MQIFATRR-QHLTRQYFDNAP------LMNVPGRTHPVEI---FYTPE----PE-RDYLEAAIRTVVQIHMCEEVEGDVL 65 (251)
Q Consensus 1 ~~~sAT~~-~~~~~~yf~~~p------vi~i~g~~~pV~~---~y~~~----~~-~~~~~~~~~~v~~i~~~~~~~g~iL 65 (251)
+++||||. .+.|..+.+-.+ .+.++. .|+... .|.+. +. ..+.......+..+-.. .+|.+|
T Consensus 407 vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~s-pf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l 483 (654)
T COG1199 407 VLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPS-PFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKA--SPGGVL 483 (654)
T ss_pred EEeeeeccCCCcHHHHHHHcCCccccceeccCC-CCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhh--cCCCEE
Confidence 57999999 445554443211 233333 222221 22221 12 24556666666665543 378999
Q ss_pred EecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecce
Q psy2956 66 LFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGV 145 (251)
Q Consensus 66 vFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~ 145 (251)
||+|+.+.++.+.+.+..... .+.+.....+=..+..++|+.... . -+.+.+.-.--+++++|.
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~-------~~~v~~q~~~~~~~~l~~f~~~~~--------~-~~lv~~gsf~EGVD~~g~ 547 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERS-------TLPVLTQGEDEREELLEKFKASGE--------G-LILVGGGSFWEGVDFPGD 547 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCc-------cceeeecCCCcHHHHHHHHHHhcC--------C-eEEEeeccccCcccCCCC
Confidence 999999999999998875311 133333333333334555554322 1 366666544446677665
Q ss_pred --EEEEeCCccc----------ceeeCCccccccceEEEcccc--hHHHHhcccCCCCC
Q psy2956 146 --VFVIDPGFAK----------QKVYNPRIRVESLLVSPISKA--SAQQRAGRAGRTRP 190 (251)
Q Consensus 146 --~lVfd~G~~~----------~~~~~~~~~~~~l~~~pis~~--~a~qR~gragr~~~ 190 (251)
..|+-.|+-= +..+....+........+..+ ...|-.||.-|...
T Consensus 548 ~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~ 606 (654)
T COG1199 548 ALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSED 606 (654)
T ss_pred CeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCC
Confidence 5666655421 111222222222333334443 45777888777543
No 125
>KOG4150|consensus
Probab=94.84 E-value=0.27 Score=46.84 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=95.4
Q ss_pred HHHHHhcC--CCCeEEeCCCccc--eeeeeCCCC-------chhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHH
Q psy2956 10 HLTRQYFD--NAPLMNVPGRTHP--VEIFYTPEP-------ERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEAC 78 (251)
Q Consensus 10 ~~~~~yf~--~~pvi~i~g~~~p--V~~~y~~~~-------~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~ 78 (251)
..-++.|+ ....+++.|..-. .-+.|.|.. ..+++....+...+.-.. .--.+.|.|... +|
T Consensus 466 ~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~---~~R~IAFC~~R~----~C 538 (1034)
T KOG4150|consen 466 RLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH---GLRCIAFCPSRK----LC 538 (1034)
T ss_pred HHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc---CCcEEEeccHHH----HH
Confidence 34456665 3456888886433 335565532 123333333333332211 223678999754 55
Q ss_pred HHHHHhhhhcCCCC-CCeEEEEcc--CCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 79 KRIKKEIDNLGPEA-GELKCIPLY--STLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 79 ~~L~~~~~~l~~~~-~~l~vi~ls--atl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
|++..+..++..+. ++|.--+|| +.-.+++++++=...-.+ .-+-+++||..|..++|.+..-|+..|+
T Consensus 539 EL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G------~L~giIaTNALELGIDIG~LDAVl~~GF-- 610 (1034)
T KOG4150|consen 539 ELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG------KLCGIIATNALELGIDIGHLDAVLHLGF-- 610 (1034)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC------eeeEEEecchhhhccccccceeEEEccC--
Confidence 66554443332211 133222222 334455555542222222 3456899999999999999999999886
Q ss_pred ceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccccce-------------eecCceEEEEeC
Q psy2956 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETS-------------LTIDGVVFVIDP 220 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEts-------------iti~~v~~ViD~ 220 (251)
|.|-++--|+.|||||... .-++--|||++ .+.|+-.+++|+
T Consensus 611 ----------------P~S~aNl~QQ~GRAGRRNk-------~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 611 ----------------PGSIANLWQQAGRAGRRNK-------PSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred ----------------chhHHHHHHHhccccccCC-------CceEEEEEeccchhhHhhcCcHHHhCCCcceeEEec
Confidence 4555666789999999543 23444444443 466676677774
No 126
>KOG0347|consensus
Probab=94.79 E-value=0.1 Score=49.27 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=43.3
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCC
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPAN 119 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~ 119 (251)
=.|||-|..+-..+++..|.... ....+++..+-+.|...+|++..+.+|..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~-----~~t~i~v~si~GGLavqKQqRlL~~~p~I 316 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIA-----EKTQIRVASITGGLAVQKQQRLLNQRPDI 316 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhc-----cccCeEEEEeechhHHHHHHHHHhcCCCE
Confidence 37999999998888888876543 34689999999999999999999987754
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=94.73 E-value=0.32 Score=48.87 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=62.8
Q ss_pred HHHHHhcCCCCeEEeCCCc------cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHH
Q psy2956 10 HLTRQYFDNAPLMNVPGRT------HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83 (251)
Q Consensus 10 ~~~~~yf~~~pvi~i~g~~------~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~ 83 (251)
+.|.+.| +-+|+.||.-. +|-.+ |. .....+.+.++.+...|.. .--|||--.+.+.-+.+.+.|..
T Consensus 399 ~Ef~~iY-~l~Vv~IPTnkP~~R~D~~d~v-y~--t~~eK~~Ai~~ei~~~~~~---GrPVLVGT~SVe~SE~ls~~L~~ 471 (913)
T PRK13103 399 FEFRQIY-GLDVVVIPPNKPLARKDFNDLV-YL--TAEEKYAAIITDIKECMAL---GRPVLVGTATIETSEHMSNLLKK 471 (913)
T ss_pred HHHHHHh-CCCEEECCCCCCcccccCCCeE-Ec--CHHHHHHHHHHHHHHHHhC---CCCEEEEeCCHHHHHHHHHHHHH
Confidence 3344444 46788888642 22222 21 2345667778888888864 33599999999888888777764
Q ss_pred hhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 84 ~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
. .+..-+|.|.-...+-. +-..+ |. .-.|.+|||.|-++-+|
T Consensus 472 ~---------gi~h~VLNAk~~~~EA~-IIa~A------G~-~GaVTIATNMAGRGTDI 513 (913)
T PRK13103 472 E---------GIEHKVLNAKYHEKEAE-IIAQA------GR-PGALTIATNMAGRGTDI 513 (913)
T ss_pred c---------CCcHHHhccccchhHHH-HHHcC------CC-CCcEEEeccCCCCCCCE
Confidence 2 23333344432222211 22111 11 23488999999877665
No 128
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.66 E-value=0.072 Score=50.03 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.2
Q ss_pred ccceeccccccceeecCceEEEEeCCCc
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
+.++++||++|-.|.|++|.+||+.|+-
T Consensus 386 ~~vLvaT~~l~~GIDi~~v~~VI~~~~P 413 (475)
T PRK01297 386 IRVLVATDVAGRGIHIDGISHVINFTLP 413 (475)
T ss_pred CcEEEEccccccCCcccCCCEEEEeCCC
Confidence 4689999999999999999999997763
No 129
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.95 E-value=0.078 Score=48.95 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.5
Q ss_pred cceeccccccceeecCceEEEEeCCCc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
++.++||+++..|.||+|.+||+.++-
T Consensus 307 ~vLVaTdv~~rGiDip~v~~VI~~d~P 333 (423)
T PRK04837 307 DILVATDVAARGLHIPAVTHVFNYDLP 333 (423)
T ss_pred cEEEEechhhcCCCccccCEEEEeCCC
Confidence 689999999999999999999986654
No 130
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=93.88 E-value=0.61 Score=47.57 Aligned_cols=139 Identities=24% Similarity=0.361 Sum_probs=76.0
Q ss_pred CCCeEEeCCCccce------eeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCC
Q psy2956 18 NAPLMNVPGRTHPV------EIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPE 91 (251)
Q Consensus 18 ~~pvi~i~g~~~pV------~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~ 91 (251)
+-+|+.||.-. |+ +..|. .....+.+.+..+...|.. .--|||=-.+.+.=+.+.+.|...
T Consensus 585 ~L~Vv~IPTnr-P~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~~---GrPVLVGT~SVe~SE~lS~~L~~~------- 651 (1112)
T PRK12901 585 KLDVVVIPTNR-PIARKDKEDLVYK--TKREKYNAVIEEITELSEA---GRPVLVGTTSVEISELLSRMLKMR------- 651 (1112)
T ss_pred CCCEEECCCCC-CcceecCCCeEec--CHHHHHHHHHHHHHHHHHC---CCCEEEEeCcHHHHHHHHHHHHHc-------
Confidence 46788888642 22 11221 2345567888888888854 334999888876555555555432
Q ss_pred CCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec--------ceEEEEeCCcccceeeCCcc
Q psy2956 92 AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID--------GVVFVIDPGFAKQKVYNPRI 163 (251)
Q Consensus 92 ~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~--------g~~lVfd~G~~~~~~~~~~~ 163 (251)
.+..-+|.|.....+-. +...+ |. .-.|.+|||.|-++-+|. |=-+||-+...
T Consensus 652 --gI~H~VLNAK~h~~EAe-IVA~A------G~-~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerh--------- 712 (1112)
T PRK12901 652 --KIPHNVLNAKLHQKEAE-IVAEA------GQ-PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERH--------- 712 (1112)
T ss_pred --CCcHHHhhccchhhHHH-HHHhc------CC-CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCC---------
Confidence 23222344432222221 22111 11 224889999998887662 33344443221
Q ss_pred ccccceEEEcccchHHHHhcccCCCC-CCccccccc
Q psy2956 164 RVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYIV 198 (251)
Q Consensus 164 ~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~~ 198 (251)
-|.--..|-.||+||.+ ||.+ |.++
T Consensus 713 ---------eSrRID~QLrGRaGRQGDPGsS-~f~l 738 (1112)
T PRK12901 713 ---------ESRRVDRQLRGRAGRQGDPGSS-QFYV 738 (1112)
T ss_pred ---------CcHHHHHHHhcccccCCCCCcc-eEEE
Confidence 12234567889999988 6764 4444
No 131
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.88 E-value=0.98 Score=44.68 Aligned_cols=134 Identities=10% Similarity=0.139 Sum_probs=74.8
Q ss_pred CeeeeccCh-HHHHHhc---C-----CCCeEEeCCCccce---eeeeCCC------CchhHHHHHHHHHHHHhhccccCC
Q psy2956 1 MQIFATRRQ-HLTRQYF---D-----NAPLMNVPGRTHPV---EIFYTPE------PERDYLEAAIRTVVQIHMCEEVEG 62 (251)
Q Consensus 1 ~~~sAT~~~-~~~~~yf---~-----~~pvi~i~g~~~pV---~~~y~~~------~~~~~~~~~~~~v~~i~~~~~~~g 62 (251)
+++|||+.. +.|..|. | ++..+.++.. |+. -..|.+. ...++.+.+.+.+..+.. .+|
T Consensus 460 IltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~Sp-F~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~---~~g 535 (697)
T PRK11747 460 VLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSP-FDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE---KHK 535 (697)
T ss_pred EEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCC-CCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh---cCC
Confidence 579999985 3554332 2 1234555443 443 2334432 234577777777777765 266
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhccc-CCCCCCCCCccceEEEecCcccceee
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEA-APANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~-~p~~~~~g~~~rkiivst~iaetslt 141 (251)
.+|||+|+...++.+++.|.... +..++. ....+.+..-+-|.. ...+ ...++++|.----+++
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~--------~~~ll~-Q~~~~~~~ll~~f~~~~~~~------~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDL--------RLMLLV-QGDQPRQRLLEKHKKRVDEG------EGSVLFGLQSFAEGLD 600 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhc--------CCcEEE-eCCchHHHHHHHHHHHhccC------CCeEEEEecccccccc
Confidence 69999999999999998886421 122332 233232222222221 1111 3457787754445677
Q ss_pred ecce--EEEEeCCc
Q psy2956 142 IDGV--VFVIDPGF 153 (251)
Q Consensus 142 I~g~--~lVfd~G~ 153 (251)
+||+ ..||-.|+
T Consensus 601 ~pGd~l~~vII~kL 614 (697)
T PRK11747 601 LPGDYLTQVIITKI 614 (697)
T ss_pred CCCCceEEEEEEcC
Confidence 8774 56776654
No 132
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.81 E-value=0.085 Score=50.87 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=25.0
Q ss_pred ccceeccccccceeecCceEEEEeCCCc
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
.++.++|+++|..|.||+|.+||+.++-
T Consensus 308 ~~VLVaTdv~arGIDip~V~~VInyd~P 335 (572)
T PRK04537 308 LEILVATDVAARGLHIDGVKYVYNYDLP 335 (572)
T ss_pred CeEEEEehhhhcCCCccCCCEEEEcCCC
Confidence 3689999999999999999999987653
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=93.70 E-value=1.1 Score=45.02 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHHhcCCCCeEEeCCCc------cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHH
Q psy2956 10 HLTRQYFDNAPLMNVPGRT------HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83 (251)
Q Consensus 10 ~~~~~yf~~~pvi~i~g~~------~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~ 83 (251)
+.|.+.| +.+|+.||... +|-.+|- ...+.+.+.+..+.+.|.. .--|||--.+.+.-+.+.+.|..
T Consensus 374 ~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~v~~---t~~~K~~AI~~ei~~~~~~---grPVLIgT~SIe~SE~ls~~L~~ 446 (870)
T CHL00122 374 LEFEKIY-NLEVVCIPTHRPMLRKDLPDLIYK---DELSKWRAIADECLQMHQT---GRPILIGTTTIEKSELLSQLLKE 446 (870)
T ss_pred HHHHHHh-CCCEEECCCCCCccceeCCCeEEe---CHHHHHHHHHHHHHHHHhc---CCCEEEeeCCHHHHHHHHHHHHH
Confidence 3444444 47788888643 2222221 2345667777788777754 33599999999888887777764
Q ss_pred hhhhcCCCCCCeEEEEccCCC-C-hhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 84 EIDNLGPEAGELKCIPLYSTL-P-PNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 84 ~~~~l~~~~~~l~vi~lsatl-~-~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
. .+..-+|.|.- . ..+-. +-..+ |. .-.+.+|||.|-++.+|
T Consensus 447 ~---------gi~h~vLNAk~~~~~~EA~-IIA~A------G~-~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 447 Y---------RLPHQLLNAKPENVRRESE-IVAQA------GR-KGSITIATNMAGRGTDI 490 (870)
T ss_pred c---------CCccceeeCCCccchhHHH-HHHhc------CC-CCcEEEeccccCCCcCe
Confidence 2 45555666642 1 22222 22221 11 22488999999887666
No 134
>PTZ00110 helicase; Provisional
Probab=93.57 E-value=0.083 Score=50.62 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=25.8
Q ss_pred cceeccccccceeecCceEEEEeCCCccc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFAKQ 225 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~k~ 225 (251)
.+.+||++|+..|.||+|.+||+.++-+.
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~~d~P~s 457 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVINFDFPNQ 457 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEEeCCCCC
Confidence 58999999999999999999999777543
No 135
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.83 E-value=2.4 Score=43.43 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEcc-CCCChhhHHHhcccCCCC
Q psy2956 41 RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLY-STLPPNLQQRIFEAAPAN 119 (251)
Q Consensus 41 ~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~ls-atl~~~~~~~~f~~~p~~ 119 (251)
.+|...+.+.+.++... .+|.+|||+|+.+.++.+++.|..... ..++.++.-. ..-+.....+-|...
T Consensus 734 ~~~~~~la~~i~~l~~~--~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~Qg~~~~~r~~l~~~F~~~--- 803 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA--TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLAQGVSSGSRARLTKQFQQF--- 803 (928)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEecCCCCCCHHHHHHHHHhc---
Confidence 46677777777776543 378999999999999999999875321 1123333321 112344444445432
Q ss_pred CCCCCccceEEEecCcccceeeecce--EEEEeCCc
Q psy2956 120 KPNGGIGRKVVVSTNIAETSLTIDGV--VFVIDPGF 153 (251)
Q Consensus 120 ~~~g~~~rkiivst~iaetsltI~g~--~lVfd~G~ 153 (251)
...+++.|.----++++||. ..||-+|+
T Consensus 804 ------~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 804 ------DKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred ------CCeEEEecCcccCccccCCCceEEEEEecC
Confidence 34577777544446777775 66766654
No 136
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.75 E-value=0.19 Score=49.00 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=24.0
Q ss_pred ccceeccccccceeecCceEEEEeCCC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
+.+.+||++++..|.||+|.+||+.++
T Consensus 296 ~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 296 LDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred CCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 468999999999999999999998544
No 137
>KOG0329|consensus
Probab=91.68 E-value=0.13 Score=44.32 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=31.0
Q ss_pred EEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 130 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 130 ivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
+++||.-.+.++|+-+-+||+- +...+..++ -+|.+||||.+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NY--------dmp~~~DtY----------lHrv~rAgrfGt 344 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNY--------DMPEDSDTY----------LHRVARAGRFGT 344 (387)
T ss_pred hHHhhhhccccCcccceeeecc--------CCCCCchHH----------HHHhhhhhcccc
Confidence 7889999999999999999984 333232222 258888888764
No 138
>KOG0331|consensus
Probab=91.52 E-value=1.5 Score=41.58 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=34.3
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcc
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFE 114 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~ 114 (251)
.+||..|..+-..++.+-..+..+. ..++..++++..+...|.+-..
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~-----~~~~~~cvyGG~~~~~Q~~~l~ 213 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKS-----LRLRSTCVYGGAPKGPQLRDLE 213 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCC-----CCccEEEEeCCCCccHHHHHHh
Confidence 3999999998887777666544322 3588899999988877766544
No 139
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.22 E-value=0.27 Score=46.12 Aligned_cols=29 Identities=31% Similarity=0.293 Sum_probs=26.2
Q ss_pred cceeccccccceeecCceEEEEeCCCccc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFAKQ 225 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~k~ 225 (251)
.+++||+.++..|.+|+|.+||..+.-+.
T Consensus 278 ~vLVaT~~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 278 QVVVATVAFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred cEEEEechhhccCCcccceEEEEeCCCCC
Confidence 68999999999999999999999877653
No 140
>KOG0352|consensus
Probab=91.20 E-value=0.37 Score=44.43 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=65.6
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhh----HHHhcccCCCCCCCCCccceEEEecCc
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL----QQRIFEAAPANKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~----~~~~f~~~p~~~~~g~~~rkiivst~i 135 (251)
..|.-+|+.-..++++++.-.|... .+-...-||.|-..+ |.+.++. ...+|.+|+-
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~----------~~PvI~AT~S 314 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNN----------EIPVIAATVS 314 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcC----------CCCEEEEEec
Confidence 3589999999999988876555432 444556778777544 4555543 3458888886
Q ss_pred ccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccccc
Q psy2956 136 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197 (251)
Q Consensus 136 aetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~ 197 (251)
-.-.++-|++.+|+. +++...+. .--|..|||||-+-...-|||
T Consensus 315 FGMGVDKp~VRFViH--------W~~~qn~A----------gYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 315 FGMGVDKPDVRFVIH--------WSPSQNLA----------GYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred cccccCCcceeEEEe--------cCchhhhH----------HHHHhccccccCCCccceeee
Confidence 666666788888887 33322222 224889999997643322554
No 141
>KOG0351|consensus
Probab=90.80 E-value=0.6 Score=47.45 Aligned_cols=97 Identities=23% Similarity=0.305 Sum_probs=71.0
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
+.+.++++.....|.+.+...|... .++.-..||.|+..+++.+-..--.+ .-++|++|=.---.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~------~~~VivATVAFGMG 548 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSD------KIRVIVATVAFGMG 548 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcC------CCeEEEEEeeccCC
Confidence 4678999999999999998888764 35667889999998877664332222 45688888665666
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
+.-+++++|+-.++-+. +.... |.+|||||-+
T Consensus 549 IdK~DVR~ViH~~lPks--------~E~YY----------QE~GRAGRDG 580 (941)
T KOG0351|consen 549 IDKPDVRFVIHYSLPKS--------FEGYY----------QEAGRAGRDG 580 (941)
T ss_pred CCCCceeEEEECCCchh--------HHHHH----------HhccccCcCC
Confidence 77799999999766432 22222 7888998865
No 142
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=90.72 E-value=1.4 Score=41.06 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|+|....+..+++.+.+.. +.. +-.+++..+.+++.........+ ..++++++.+...++
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~eR~~il~~fr~g------~~~~lv~~~vl~EGv 346 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEEREAILERFRTG------GIKVLVTVKVLDEGV 346 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHHHHHHHHHHHcC------CCCEEEEeeecccee
Confidence 45799999999999988777653 233 66788888999998888777665 567899999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c 193 (251)
++|++-.+|...=. -|...-.||.||.=|..+|+-
T Consensus 347 DiP~~~~~i~~~~t------------------~S~~~~~Q~lGR~LR~~~~k~ 381 (442)
T COG1061 347 DIPDADVLIILRPT------------------GSRRLFIQRLGRGLRPAEGKE 381 (442)
T ss_pred cCCCCcEEEEeCCC------------------CcHHHHHHHhhhhccCCCCCC
Confidence 99987766652100 122244699999988766654
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.57 E-value=1.2 Score=44.01 Aligned_cols=81 Identities=7% Similarity=0.079 Sum_probs=50.4
Q ss_pred CeeeeccC-hHHHHHhcCC-CCeEEeCCCccc-----------------eeeeeCCCCchhHHHHHHHHHHHHhhccccC
Q psy2956 1 MQIFATRR-QHLTRQYFDN-APLMNVPGRTHP-----------------VEIFYTPEPERDYLEAAIRTVVQIHMCEEVE 61 (251)
Q Consensus 1 ~~~sAT~~-~~~~~~yf~~-~pvi~i~g~~~p-----------------V~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~ 61 (251)
+++||||. .+.|.+.+|- .+.....+..+| .+.-|......+++....+.+.++... .+
T Consensus 445 il~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~--~p 522 (705)
T TIGR00604 445 ILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI--IP 522 (705)
T ss_pred EEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc--CC
Confidence 47899998 6667766663 222211111122 111222222345667666667666643 48
Q ss_pred CCEEEecCCHHHHHHHHHHHHH
Q psy2956 62 GDVLLFLTGQEEIEEACKRIKK 83 (251)
Q Consensus 62 g~iLvFLpg~~ei~~~~~~L~~ 83 (251)
|.+|||+|+...++++.+.+..
T Consensus 523 gg~lvfFpSy~~l~~v~~~~~~ 544 (705)
T TIGR00604 523 DGIVVFFPSYSYLENIVSTWKE 544 (705)
T ss_pred CcEEEEccCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 144
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=89.16 E-value=6.1 Score=37.72 Aligned_cols=104 Identities=24% Similarity=0.221 Sum_probs=77.7
Q ss_pred CCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceee
Q psy2956 62 GDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 62 g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetslt 141 (251)
.-+||-.-+....+.+.+.|.+. ++|+--||+.++.-++-.+..+-..| .-.++|-.|...-+++
T Consensus 447 eRvLVTtLTKkmAEdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G------~~DvLVGINLLREGLD 511 (663)
T COG0556 447 ERVLVTTLTKKMAEDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLG------EFDVLVGINLLREGLD 511 (663)
T ss_pred CeEEEEeehHHHHHHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcC------CccEEEeehhhhccCC
Confidence 45899888888888888888763 89999999999999999888887777 5668899999999999
Q ss_pred ecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcc
Q psy2956 142 IDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC 193 (251)
Q Consensus 142 I~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c 193 (251)
+|.+-+|.--.-.+.- | | =|..+-.|=.|||.|.-.|+.
T Consensus 512 iPEVsLVAIlDADKeG-F--------L----Rse~SLIQtIGRAARN~~Gkv 550 (663)
T COG0556 512 LPEVSLVAILDADKEG-F--------L----RSERSLIQTIGRAARNVNGKV 550 (663)
T ss_pred CcceeEEEEeecCccc-c--------c----cccchHHHHHHHHhhccCCeE
Confidence 9988777421111110 0 0 022344588899999888874
No 145
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.13 E-value=0.11 Score=48.46 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=47.1
Q ss_pred ceEEEEeCCcccceeeCCccccccceEEEcccc-hHHHH--hcccCCCCCCccccccceeccccccceeecCceEEEEeC
Q psy2956 144 GVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA-SAQQR--AGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 144 g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~-~a~qR--~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
+-++||-.................+.+.++|.. +..+| +-..++ .|. .++.+||+++|..|.||+|.+||+.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~--~g~---~~vLVaTdv~~rGiDi~~v~~VI~~ 317 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA--NRS---CSVLVATDVAARGLDIKALEAVINY 317 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH--cCC---CcEEEEecccccccchhcCCeEEEe
Confidence 445666655543322111111223455666653 22222 222222 243 3688999999999999999999998
Q ss_pred CCccc-eeeccC
Q psy2956 221 GFAKQ-KVYNPR 231 (251)
Q Consensus 221 g~~k~-~~~~~~ 231 (251)
++-.. ..|-.+
T Consensus 318 d~p~~~~~yiqR 329 (460)
T PRK11776 318 ELARDPEVHVHR 329 (460)
T ss_pred cCCCCHhHhhhh
Confidence 88653 234433
No 146
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=88.36 E-value=0.32 Score=32.96 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=23.3
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++.++.+.++++..||..+.
T Consensus 39 ~vli~t~~~~~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 39 KVLVATDVAERGLDLPGVDLVIIYDL 64 (82)
T ss_pred eEEEECChhhCCcChhcCCEEEEeCC
Confidence 57899999999999999999998766
No 147
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=87.28 E-value=8 Score=39.11 Aligned_cols=82 Identities=5% Similarity=0.132 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCC
Q psy2956 41 RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANK 120 (251)
Q Consensus 41 ~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~ 120 (251)
.+|.+.+.+.+..+. . .+|.+|||+|+.+.++.+.+.|... +..++.-..+.+.....+-|...
T Consensus 630 ~~~~~~~~~~i~~~~-~--~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~l~Qg~~~~~~~l~~~F~~~---- 693 (820)
T PRK07246 630 EVYAEEIAKRLEELK-Q--LQQPILVLFNSKKHLLAVSDLLDQW---------QVSHLAQEKNGTAYNIKKRFDRG---- 693 (820)
T ss_pred HHHHHHHHHHHHHHH-h--cCCCEEEEECcHHHHHHHHHHHhhc---------CCcEEEeCCCccHHHHHHHHHcC----
Confidence 467767777666655 2 3799999999999999988887531 12233322223333334445431
Q ss_pred CCCCccceEEEecCcccceeeec
Q psy2956 121 PNGGIGRKVVVSTNIAETSLTID 143 (251)
Q Consensus 121 ~~g~~~rkiivst~iaetsltI~ 143 (251)
...+++.|+----++++|
T Consensus 694 -----~~~vLlG~~sFwEGVD~p 711 (820)
T PRK07246 694 -----EQQILLGLGSFWEGVDFV 711 (820)
T ss_pred -----CCeEEEecchhhCCCCCC
Confidence 345888774333345564
No 148
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=85.29 E-value=0.79 Score=47.38 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.5
Q ss_pred ccceeccccccceeecCceEEEEeCCCccc
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQ 225 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~ 225 (251)
..+++||+.+...|-+|+|++||.-++-+.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlPkS 760 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLPKS 760 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCCCC
Confidence 368999999999999999999999877654
No 149
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.09 E-value=0.35 Score=44.76 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=35.0
Q ss_pred ceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCc
Q psy2956 168 LLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 168 l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
+...++|.. +..+|..-..+...|. ..+.+||++++..|.||+|.+||+.++-
T Consensus 270 ~~~~~l~g~~~~~~R~~~l~~f~~G~---~~vLVaTd~~~~GiDip~v~~VI~~d~p 323 (434)
T PRK11192 270 INCCYLEGEMVQAKRNEAIKRLTDGR---VNVLVATDVAARGIDIDDVSHVINFDMP 323 (434)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhCCC---CcEEEEccccccCccCCCCCEEEEECCC
Confidence 455666654 3333321111223454 3689999999999999999999987653
No 150
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=84.22 E-value=6.6 Score=40.63 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=47.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|||---...++.+.+.|.. .++....+++.++.+++........... .....++++|..+..++
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~---------~g~~y~rIdGsts~~eRq~~Id~Fn~~~---s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMY---------RGYQYCRIDGNTGGEDRDASIDAFNKPG---SEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHH---------cCCcEEEECCCCCHHHHHHHHHHhcccc---CCceEEEEeccccccCC
Confidence 34688885544444444443332 2567788899999887776543332110 00345678999998888
Q ss_pred eecceEEEEe
Q psy2956 141 TIDGVVFVID 150 (251)
Q Consensus 141 tI~g~~lVfd 150 (251)
.+.+.-.||.
T Consensus 555 NLt~Ad~VIi 564 (1033)
T PLN03142 555 NLATADIVIL 564 (1033)
T ss_pred chhhCCEEEE
Confidence 8866555554
No 151
>KOG0952|consensus
Probab=83.93 E-value=20 Score=37.00 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=87.2
Q ss_pred CeeeeccC-hHHHHHhcCC---CCeEEeCCCccc--eeeeeCCCCc------hhHH-HHHHHHHHHHhhccccCCCEEEe
Q psy2956 1 MQIFATRR-QHLTRQYFDN---APLMNVPGRTHP--VEIFYTPEPE------RDYL-EAAIRTVVQIHMCEEVEGDVLLF 67 (251)
Q Consensus 1 ~~~sAT~~-~~~~~~yf~~---~pvi~i~g~~~p--V~~~y~~~~~------~~~~-~~~~~~v~~i~~~~~~~g~iLvF 67 (251)
+-+|||+. -+..+.|++- ..++...++--| .+.++.-.+. .+.+ +.+.+.+.+.+.. ...+|||
T Consensus 279 vgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~---g~qVlvF 355 (1230)
T KOG0952|consen 279 VGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE---GHQVLVF 355 (1230)
T ss_pred EEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc---CCeEEEE
Confidence 35899997 5666777764 345666664333 3444332111 1122 2233444454432 4569999
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCC-----CC--C-------eEEEEccCCCChhh---HHHhcccCCCCCCCCCccceEE
Q psy2956 68 LTGQEEIEEACKRIKKEIDNLGPE-----AG--E-------LKCIPLYSTLPPNL---QQRIFEAAPANKPNGGIGRKVV 130 (251)
Q Consensus 68 Lpg~~ei~~~~~~L~~~~~~l~~~-----~~--~-------l~vi~lsatl~~~~---~~~~f~~~p~~~~~g~~~rkii 130 (251)
++...+-.+..+.|.+.....+.. .+ + .-+-+-||.|..++ .++.|... ..++.
T Consensus 356 vhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G---------~i~vL 426 (1230)
T KOG0952|consen 356 VHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG---------HIKVL 426 (1230)
T ss_pred EecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC---------CceEE
Confidence 999999888888887654432211 11 1 11234567776554 34556542 35677
Q ss_pred EecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 131 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 131 vst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
++|.-..=.+.+|.--.+|- | ...|++..+. .. -+.-..-.|--|||||++
T Consensus 427 ~cTaTLAwGVNLPA~aViIK-G---T~~ydsskg~--f~--dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 427 CCTATLAWGVNLPAYAVIIK-G---TQVYDSSKGS--FV--DLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred EecceeeeccCCcceEEEec-C---CcccccccCc--ee--eehHHHHHHHHhccCCCC
Confidence 77765444444444333332 1 1234443221 10 011123456668999976
No 152
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=83.67 E-value=2.1 Score=41.47 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=25.1
Q ss_pred cceeccccccceeecCceEEEEeCCCcc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFAK 224 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~k 224 (251)
.+++||+..+..|-+|+|++||+.++-+
T Consensus 276 ~vlVaT~a~~~GID~p~v~~VI~~~~p~ 303 (591)
T TIGR01389 276 KVMVATNAFGMGIDKPNVRFVIHYDMPG 303 (591)
T ss_pred cEEEEechhhccCcCCCCCEEEEcCCCC
Confidence 5899999999999999999999977644
No 153
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=83.13 E-value=1 Score=30.66 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.8
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++.+|.+|++..||..+.
T Consensus 35 ~vli~t~~~~~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 35 RVLIATDILGEGIDLPDASHVIFYDP 60 (78)
T ss_dssp SEEEESCGGTTSSTSTTESEEEESSS
T ss_pred eEEEeecccccccccccccccccccc
Confidence 57899999999999999999998766
No 154
>PTZ00424 helicase 45; Provisional
Probab=81.98 E-value=0.46 Score=43.24 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=24.7
Q ss_pred ccceeccccccceeecCceEEEEeCCCc
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
.++.++|++++-.|.||+|.+||+.++-
T Consensus 318 ~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 318 TRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCEEEEcccccCCcCcccCCEEEEECCC
Confidence 3689999999999999999999986653
No 155
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=80.77 E-value=0.54 Score=47.89 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=31.4
Q ss_pred cceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEE
Q psy2956 167 SLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVI 218 (251)
Q Consensus 167 ~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~Vi 218 (251)
...+..+|.. +..+|.-.--....|+ ..+.+||+|+|..|.||+|..||
T Consensus 686 ~~~v~~lHG~m~~~eRe~im~~F~~Gk---~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 686 EARIAIAHGQMTENELEEVMLEFYKGE---FQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcccccccCCEEE
Confidence 3456667654 2333321111122344 36899999999999999999988
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=80.09 E-value=32 Score=33.85 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCC-C-hhhHHHhcccCCCCC
Q psy2956 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTL-P-PNLQQRIFEAAPANK 120 (251)
Q Consensus 43 ~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl-~-~~~~~~~f~~~p~~~ 120 (251)
|.++..+.+..+... ..|..||.+++...++.+.+.|...+ ++.++.-. .. . .+..++|-.....+
T Consensus 454 ~~~~~~~~~~~~~~~--~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~l~qg-~~~~~~~l~~~f~~~~~~~- 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK--AQGGTLVLTTAFSHISAIGQLVELGI--------PAEIVIQS-EKNRLASAEQQFLALYANG- 521 (636)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEechHHHHHHHHHHHHhhc--------CCCEEEeC-CCccHHHHHHHHHHhhcCC-
Confidence 555566666666543 37899999999999999999886532 24444443 33 3 22233332221111
Q ss_pred CCCCccceEEEecCcccceeee
Q psy2956 121 PNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 121 ~~g~~~rkiivst~iaetsltI 142 (251)
...+++.|+-.=.++++
T Consensus 522 -----~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 522 -----IQPVLIAAGGAWTGIDL 538 (636)
T ss_pred -----CCcEEEeCCcccccccc
Confidence 35688888766667777
No 157
>KOG0330|consensus
Probab=79.79 E-value=5.1 Score=36.74 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=42.4
Q ss_pred cceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCcc
Q psy2956 167 SLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAK 224 (251)
Q Consensus 167 ~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k 224 (251)
.+.-.|+|.. +..+|.|+.-....|.| -+-++|++|-=.|-||.|..||+..+=.
T Consensus 324 g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r---~iLv~TDVaSRGLDip~Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 324 GFQAIPLHGQMSQSKRLGALNKFKAGAR---SILVCTDVASRGLDIPHVDVVVNYDIPT 379 (476)
T ss_pred CcceecccchhhHHHHHHHHHHHhccCC---cEEEecchhcccCCCCCceEEEecCCCC
Confidence 3456677754 67788887666667764 5778999999999999999999966543
No 158
>PRK10689 transcription-repair coupling factor; Provisional
Probab=78.27 E-value=0.52 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=21.0
Q ss_pred cceeccccccceeecCceEEEE
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVI 218 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~Vi 218 (251)
.+.+||+|+|..|.||+|.+||
T Consensus 863 ~VLVaTdIierGIDIP~v~~VI 884 (1147)
T PRK10689 863 NVLVCTTIIETGIDIPTANTII 884 (1147)
T ss_pred CEEEECchhhcccccccCCEEE
Confidence 5889999999999999999998
No 159
>PRK02362 ski2-like helicase; Provisional
Probab=78.15 E-value=1.9 Score=42.85 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=39.2
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+++.+||+.++..+.+|.+.+||+. .+.||+..|. .|+|.++-.||+
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~ 376 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMA 376 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHh
Confidence 5799999999999999999999974 4678887654 588888888874
No 160
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=75.29 E-value=8.2 Score=34.47 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=37.1
Q ss_pred cceEEEEeCCcccceeeCCcc--ccccceEEEcccc-hHHHHhcc----cCCCCCCccccccceeccccccceeecCceE
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRI--RVESLLVSPISKA-SAQQRAGR----AGRTRPGKCFRYIVVVSTNIAETSLTIDGVV 215 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~--~~~~l~~~pis~~-~a~qR~gr----agr~~~G~c~Rl~~i~aTniaEtsiti~~v~ 215 (251)
++-++||-............. ......+.++|.. ...+|... ..+...|+ .++.+||+++|.+|.|+ +.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~---~~ilvaT~~~~~GiDi~-~~ 297 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE---KFVIVATQVIEASLDIS-AD 297 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC---CeEEEECcchhceeccC-CC
Confidence 467788887765432211100 1111245666654 22222110 00112243 36899999999999997 44
Q ss_pred EEE
Q psy2956 216 FVI 218 (251)
Q Consensus 216 ~Vi 218 (251)
+||
T Consensus 298 ~vi 300 (358)
T TIGR01587 298 VMI 300 (358)
T ss_pred EEE
Confidence 444
No 161
>KOG0387|consensus
Probab=75.25 E-value=34 Score=34.30 Aligned_cols=108 Identities=20% Similarity=0.364 Sum_probs=70.6
Q ss_pred CCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceee
Q psy2956 62 GDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 62 g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetslt 141 (251)
.-+|+|=.....++-+...|.. .+++..+-|-++.+...+...-....... ...-++++|-+.--.+.
T Consensus 547 ~rvllFsqs~~mLdilE~fL~~--------~~~ysylRmDGtT~~~~R~~lVd~Fne~~----s~~VFLLTTrvGGLGlN 614 (923)
T KOG0387|consen 547 DRVLLFSQSRQMLDILESFLRR--------AKGYSYLRMDGTTPAALRQKLVDRFNEDE----SIFVFLLTTRVGGLGLN 614 (923)
T ss_pred CEEEEehhHHHHHHHHHHHHHh--------cCCceEEEecCCCccchhhHHHHhhcCCC----ceEEEEEEecccccccc
Confidence 3588887776666654444432 25888999999988887776633322211 03445678888766655
Q ss_pred e--cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 142 I--DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 142 I--~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
+ .+-+.+|||-| ||..+ .+|..|+-|.|....-..|||-+
T Consensus 615 LTgAnRVIIfDPdW------NPStD-----------~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 615 LTGANRVIIFDPDW------NPSTD-----------NQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cccCceEEEECCCC------CCccc-----------hHHHHHHHhhcCccceEEEEEec
Confidence 5 45678888853 44433 45677888888887777888754
No 162
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=73.76 E-value=7.3 Score=31.08 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=42.1
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecC--ccc
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN--IAE 137 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~--iae 137 (251)
.+|.+|||+|+.+.++.+.+.+..... ..+..++.-. .-+.+..-+-|.. . ..-+++++. -.-
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~-----~~~~~v~~q~-~~~~~~~l~~~~~---~------~~~il~~v~~g~~~ 72 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE-----EKGIPVFVQG-SKSRDELLEEFKR---G------EGAILLAVAGGSFS 72 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEEST-CCHHHHHHHHHCC---S------SSEEEEEETTSCCG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc-----cccceeeecC-cchHHHHHHHHHh---c------cCeEEEEEecccEE
Confidence 479999999999999998887764321 1133444432 2222222222332 2 345777774 223
Q ss_pred ceeeecc--eEEEEeCCc
Q psy2956 138 TSLTIDG--VVFVIDPGF 153 (251)
Q Consensus 138 tsltI~g--~~lVfd~G~ 153 (251)
-+++++| ...||..|+
T Consensus 73 EGiD~~~~~~r~vii~gl 90 (167)
T PF13307_consen 73 EGIDFPGDLLRAVIIVGL 90 (167)
T ss_dssp SSS--ECESEEEEEEES-
T ss_pred EeecCCCchhheeeecCC
Confidence 3566665 557777775
No 163
>KOG0390|consensus
Probab=71.29 E-value=22 Score=35.60 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=30.5
Q ss_pred CeEEEEccCCCChhhHHHh---cccCCCCCCCCCccceEEEecCcccceeeecc
Q psy2956 94 ELKCIPLYSTLPPNLQQRI---FEAAPANKPNGGIGRKVVVSTNIAETSLTIDG 144 (251)
Q Consensus 94 ~l~vi~lsatl~~~~~~~~---f~~~p~~~~~g~~~rkiivst~iaetsltI~g 144 (251)
+..++.|+++++..++++. |+.++.. ..-+.+++....-+|.+=|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~------~~vfLlSsKAgg~GinLiG 666 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESP------SFVFLLSSKAGGEGLNLIG 666 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCC------ceEEEEecccccCceeecc
Confidence 8899999999999999887 5544332 3444556665555555533
No 164
>KOG0392|consensus
Probab=71.27 E-value=22 Score=37.43 Aligned_cols=107 Identities=23% Similarity=0.377 Sum_probs=74.2
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHh---cccCCCCCCCCCccceEEEecCcccce
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRI---FEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~---f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
-+|+|.-=...++-+.+-|.+ +..|.....-|-+++++.++.++ |+..|.. ...+++|.+..-+
T Consensus 1342 RiLIFcQlK~mlDlVekDL~k------~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptI-------DvLlLTThVGGLG 1408 (1549)
T KOG0392|consen 1342 RILIFCQLKSMLDLVEKDLFK------KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTI-------DVLLLTTHVGGLG 1408 (1549)
T ss_pred eeEEeeeHHHHHHHHHHHHhh------hhcCceeEEEecCCCCcHHHHHHHHHhcCCCce-------eEEEEeeeccccc
Confidence 499999877777776665553 23356777788999999888776 6666643 3457899998888
Q ss_pred eeecc-eEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 140 LTIDG-VVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 140 ltI~g-~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
+..-| ++.||. ..-+||-.+ -+|..|+-|.|..+--..||+-+
T Consensus 1409 LNLTGADTVVFv-----EHDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlIt 1452 (1549)
T KOG0392|consen 1409 LNLTGADTVVFV-----EHDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLIT 1452 (1549)
T ss_pred cccCCCceEEEE-----ecCCCchhh-----------HHHHHHHHhhcCceeeeeeeehh
Confidence 88876 445554 112444333 35677888988887777899754
No 165
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=68.34 E-value=1.5 Score=40.99 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.1
Q ss_pred ccceeccccccceeecCceEEEEeCCCccc
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQ 225 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~ 225 (251)
..+.+||++++-.|.||+|.+||+.++-+.
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~ 325 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNV 325 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCC
Confidence 368999999999999999999999776543
No 166
>KOG0948|consensus
Probab=68.29 E-value=18 Score=36.20 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=36.1
Q ss_pred cceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 126 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 126 ~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
--|+.++|.--.-++.+|--+.||-.-. ....-...|||+..-.|.+|||||.+
T Consensus 472 LvKvLFATETFsiGLNMPAkTVvFT~~r----------KfDG~~fRwissGEYIQMSGRAGRRG 525 (1041)
T KOG0948|consen 472 LVKVLFATETFSIGLNMPAKTVVFTAVR----------KFDGKKFRWISSGEYIQMSGRAGRRG 525 (1041)
T ss_pred HHHHHHhhhhhhhccCCcceeEEEeecc----------ccCCcceeeecccceEEecccccccC
Confidence 3556667765555566676666765311 22334567999998899999999965
No 167
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=64.23 E-value=3.4 Score=39.34 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=24.2
Q ss_pred cceeccccccceeecCceEEEEeCCCc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
.+.+||++++-.|.||+|.+||..++-
T Consensus 420 ~ILVaTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 420 PVIVATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred CEEEEecHhhccCCcccCCEEEEeCCC
Confidence 689999999999999999999986653
No 168
>KOG0950|consensus
Probab=64.15 E-value=25 Score=35.82 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.1
Q ss_pred CEEEecCCHHHHHHHHHHH
Q psy2956 63 DVLLFLTGQEEIEEACKRI 81 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L 81 (251)
..|||.|+....+.+...+
T Consensus 462 ~~lvfc~sk~~ce~~a~~~ 480 (1008)
T KOG0950|consen 462 SVLVFCPSKKNCENVASLI 480 (1008)
T ss_pred eEEEEcCcccchHHHHHHH
Confidence 3999999988776665544
No 169
>KOG1123|consensus
Probab=63.65 E-value=16 Score=34.88 Aligned_cols=149 Identities=19% Similarity=0.296 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCcc
Q psy2956 47 AIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIG 126 (251)
Q Consensus 47 ~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~ 126 (251)
+++-+++.|... ...|+||-...--+. +.-. .+++ . -+++..+..++-+++.+..... .
T Consensus 531 aCqfLI~~HE~R--gDKiIVFsDnvfALk---~YAi----kl~K---p----fIYG~Tsq~ERm~ILqnFq~n~-----~ 589 (776)
T KOG1123|consen 531 ACQFLIKFHERR--GDKIIVFSDNVFALK---EYAI----KLGK---P----FIYGPTSQNERMKILQNFQTNP-----K 589 (776)
T ss_pred HHHHHHHHHHhc--CCeEEEEeccHHHHH---HHHH----HcCC---c----eEECCCchhHHHHHHHhcccCC-----c
Confidence 455666667432 345888854432222 1111 1111 1 2456666666666654433221 2
Q ss_pred ceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc-----cccccceec
Q psy2956 127 RKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK-----CFRYIVVVS 201 (251)
Q Consensus 127 rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~-----c~Rl~~i~a 201 (251)
..-|+-..+++||+++|.....|.-.- . -=|.-+..||.||.-|...+. .| .|+-++
T Consensus 590 vNTIFlSKVgDtSiDLPEAnvLIQISS----------H-------~GSRRQEAQRLGRILRAKk~~de~fnaf-FYSLVS 651 (776)
T KOG1123|consen 590 VNTIFLSKVGDTSIDLPEANVLIQISS----------H-------GGSRRQEAQRLGRILRAKKRNDEEFNAF-FYSLVS 651 (776)
T ss_pred cceEEEeeccCccccCCcccEEEEEcc----------c-------ccchHHHHHHHHHHHHHhhcCcccccee-eeeeee
Confidence 334666788999999887666554210 0 012335678888765543222 22 267788
Q ss_pred cccccceeecCceEEEEeCCCccceeeccCCCcc
Q psy2956 202 TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE 235 (251)
Q Consensus 202 TniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~ 235 (251)
++--|..-.-..=.|.||.|+.= ++-..--||+
T Consensus 652 ~DTqEM~YStKRQ~FLidQGYsf-kVit~L~gme 684 (776)
T KOG1123|consen 652 KDTQEMYYSTKRQQFLIDQGYSF-KVITNLPGME 684 (776)
T ss_pred cchHHHHhhhhhhhhhhhcCceE-EEeecCCCcC
Confidence 88778776667778888888764 3334444555
No 170
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.57 E-value=22 Score=35.41 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=46.3
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChh--hHHHhcccCCCCCCCCCccceEEEecCcccceee
Q psy2956 64 VLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPN--LQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT 141 (251)
Q Consensus 64 iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~--~~~~~f~~~p~~~~~g~~~rkiivst~iaetslt 141 (251)
+--|-+|.+.|++-.+++ .|+.+++-+.++.... ..+..+.....+ .-.|++-|-+...+..
T Consensus 486 L~~~G~GterieeeL~~~----------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g------e~dILiGTQmiaKG~~ 549 (730)
T COG1198 486 LRAVGPGTERIEEELKRL----------FPGARIIRIDSDTTRRKGALEDLLDQFANG------EADILIGTQMIAKGHD 549 (730)
T ss_pred eEEecccHHHHHHHHHHH----------CCCCcEEEEccccccchhhHHHHHHHHhCC------CCCeeecchhhhcCCC
Confidence 445566876665533322 2688899888776543 345555555555 4568888887777888
Q ss_pred ecceEEEEe
Q psy2956 142 IDGVVFVID 150 (251)
Q Consensus 142 I~g~~lVfd 150 (251)
.|++.+|..
T Consensus 550 fp~vtLVgv 558 (730)
T COG1198 550 FPNVTLVGV 558 (730)
T ss_pred cccceEEEE
Confidence 899888753
No 171
>KOG0335|consensus
Probab=60.47 E-value=4 Score=38.29 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=21.9
Q ss_pred cceeccccccceeecCceEEEEeC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
-+.+|||||.-.|-||+|+.||+-
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEe
Confidence 368999999999999999999974
No 172
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=59.48 E-value=1.2e+02 Score=31.24 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=61.7
Q ss_pred HHHhcCCCCeEEeCCCccceeeeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhc
Q psy2956 12 TRQYFDNAPLMNVPGRTHPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNL 88 (251)
Q Consensus 12 ~~~yf~~~pvi~i~g~~~pV~~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l 88 (251)
|.+.| +.+|+.||...--...-+.+ ......+.+.++.+...|.. .--|||-..+.+.-+.+.+.|...
T Consensus 391 f~~iY-~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~---GrPVLIgT~SVe~SE~ls~~L~~~---- 462 (939)
T PRK12902 391 FEKTY-KLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQ---GRPVLVGTTSVEKSELLSALLQEQ---- 462 (939)
T ss_pred HHHHh-CCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhC---CCCEEEeeCCHHHHHHHHHHHHHc----
Confidence 44443 46788888642111111111 12345667777888888854 335999999988888777777642
Q ss_pred CCCCCCeEEEEccCC-CChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 89 GPEAGELKCIPLYST-LPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 89 ~~~~~~l~vi~lsat-l~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
.+..-++.|. ...+.=..+-..+. . .-.+.+|||.|-++-+|
T Consensus 463 -----gi~h~vLNAk~~~~~~EA~IIa~AG------~-~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 463 -----GIPHNLLNAKPENVEREAEIVAQAG------R-KGAVTIATNMAGRGTDI 505 (939)
T ss_pred -----CCchheeeCCCcchHhHHHHHHhcC------C-CCcEEEeccCCCCCcCE
Confidence 3333445554 22111112222211 1 23488999999877555
No 173
>KOG0353|consensus
Probab=58.91 E-value=30 Score=31.76 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=61.9
Q ss_pred CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCC
Q psy2956 38 EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAP 117 (251)
Q Consensus 38 ~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p 117 (251)
..+.+.++...+++..-.. ...-+++.-++.+.+.+...|..+ .++.-.-||.|.+++..-.-..--
T Consensus 298 ~n~dd~~edi~k~i~~~f~----gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~ 364 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFA----GQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWI 364 (695)
T ss_pred CChHHHHHHHHHHhccccC----CCcceEEEeccccHHHHHHHHHhc---------CccccccccccCcccccccccccc
Confidence 3445666665554422221 122445555788888877777643 455566788888877654433222
Q ss_pred CCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 118 ANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 118 ~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
.+ ..+++|+|-.-...++-|++.+||.-.+.+
T Consensus 365 a~------eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 365 AG------EIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred cc------ceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 22 567888887666677779999999987764
No 174
>PRK13767 ATP-dependent helicase; Provisional
Probab=58.04 E-value=6.2 Score=40.20 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.1
Q ss_pred ccceeccccccceeecCceEEEEeCC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
+++++||+.+|-.|-||+|.+||.-|
T Consensus 341 i~vLVaTs~Le~GIDip~Vd~VI~~~ 366 (876)
T PRK13767 341 LKVVVSSTSLELGIDIGYIDLVVLLG 366 (876)
T ss_pred CeEEEECChHHhcCCCCCCcEEEEeC
Confidence 47999999999999999999999644
No 175
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=55.26 E-value=52 Score=33.29 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHH
Q psy2956 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83 (251)
Q Consensus 43 ~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~ 83 (251)
.+.+.++.+...|.. ++-+||--.+.+.-+.+.+.|.+
T Consensus 414 K~~Aiv~~I~~~~~~---gqPvLvgT~sie~SE~ls~~L~~ 451 (822)
T COG0653 414 KFKAIVEDIKERHEK---GQPVLVGTVSIEKSELLSKLLRK 451 (822)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEcCcceecchhHHHHHHh
Confidence 456666777777753 55699998888877777777764
No 176
>PRK14873 primosome assembly protein PriA; Provisional
Probab=54.88 E-value=29 Score=34.31 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=46.6
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ 134 (251)
.+.+||.+|......++.++|...+ ++-.+..+||.++..++.+.|.....+ ..+|++-|-
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f-------~~~~v~~lhS~l~~~~R~~~w~~~~~G------~~~IViGtR 248 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALL-------GAGDVAVLSAGLGPADRYRRWLAVLRG------QARVVVGTR 248 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHc-------CCCcEEEECCCCCHHHHHHHHHHHhCC------CCcEEEEcc
Confidence 5689999999999999999998643 224588899999998888777766555 445776543
No 177
>KOG0326|consensus
Probab=54.20 E-value=6.9 Score=35.05 Aligned_cols=59 Identities=32% Similarity=0.410 Sum_probs=43.6
Q ss_pred EcccchHHHHhcccCC-CCCCccccccceeccccccceeecCceEEEEeCCCccce-eeccCCC
Q psy2956 172 PISKASAQQRAGRAGR-TRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQK-VYNPRIR 233 (251)
Q Consensus 172 pis~~~a~qR~gragr-~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~-~~~~~~~ 233 (251)
.+|...+|+...|++. .+.|+| +.-++|++---.|-|+.|.+||+..|-|.. .|-++.|
T Consensus 351 yiHakM~Q~hRNrVFHdFr~G~c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIG 411 (459)
T KOG0326|consen 351 YIHAKMAQEHRNRVFHDFRNGKC---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG 411 (459)
T ss_pred HHHHHHHHhhhhhhhhhhhcccc---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHcc
Confidence 3455556665556544 457898 567899999999999999999999998865 4555543
No 178
>KOG0333|consensus
Probab=54.02 E-value=12 Score=35.84 Aligned_cols=61 Identities=30% Similarity=0.387 Sum_probs=42.9
Q ss_pred ceEEEcccc-hHHHHhc--ccCCCCCCccccccceeccccccceeecCceEEEEeCCCccce-eeccCCC
Q psy2956 168 LLVSPISKA-SAQQRAG--RAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQK-VYNPRIR 233 (251)
Q Consensus 168 l~~~pis~~-~a~qR~g--ragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~-~~~~~~~ 233 (251)
+..+-+|.+ +.+||.. -.+|...| -+-+|||+|=-.|-||+|.+||+-.+.|.. -|-+++|
T Consensus 542 ~~~~tlHg~k~qeQRe~aL~~fr~~t~-----dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIG 606 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQRENALADFREGTG-----DILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIG 606 (673)
T ss_pred ceEEEeeCCccHHHHHHHHHHHHhcCC-----CEEEEecccccCCCCCccceeeecchhhhHHHHHHHhc
Confidence 567778876 5566642 12333223 267899999999999999999998888865 4555543
No 179
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=52.95 E-value=7 Score=39.04 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=24.7
Q ss_pred ccceeccccccceeecCceEEEEeCCC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
+++++|||++|-.|-|++|.+||..|+
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~ 356 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGF 356 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCC
Confidence 468999999999999999999998775
No 180
>KOG0338|consensus
Probab=52.44 E-value=14 Score=35.12 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=37.6
Q ss_pred ccccceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCcc
Q psy2956 164 RVESLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAK 224 (251)
Q Consensus 164 ~~~~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k 224 (251)
+...+.+--+|.+ +.+||.--..+...+.| -+-+||++|--.|-|+||..||+--+=+
T Consensus 447 GLlgl~agElHGsLtQ~QRlesL~kFk~~ei---dvLiaTDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 447 GLLGLKAGELHGSLTQEQRLESLEKFKKEEI---DVLIATDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred HHhhchhhhhcccccHHHHHHHHHHHHhccC---CEEEEechhhccCCccceeEEEeccCch
Confidence 3445556667766 45666422112223333 3568999999999999999999865443
No 181
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=50.75 E-value=8.8 Score=41.26 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.7
Q ss_pred ccceeccccccceeecCceEEEEeCC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
+++++||+.+|-.|-|++|.+||..|
T Consensus 328 LrvLVATssLELGIDIg~VDlVIq~g 353 (1490)
T PRK09751 328 LRCVVATSSLELGIDMGAVDLVIQVA 353 (1490)
T ss_pred ceEEEeCcHHHccCCcccCCEEEEeC
Confidence 57999999999999999999999855
No 182
>KOG0384|consensus
Probab=50.32 E-value=66 Score=33.96 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=63.2
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
-+|+|=--...++-+.+.|.. ..+..=-+-+++..+.++...+.... ++...--+.+||-...-+|.+
T Consensus 701 rVLIFSQMVRmLDIL~eYL~~---------r~ypfQRLDGsvrgelRq~AIDhFna---p~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 701 RVLIFSQMVRMLDILAEYLSL---------RGYPFQRLDGSVRGELRQQAIDHFNA---PDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred eEEEhHHHHHHHHHHHHHHHH---------cCCcceeccCCcchHHHHHHHHhccC---CCCCceEEEEecccCcccccc
Confidence 488884444444444444432 13334446677888877765433221 112245567888665555443
Q ss_pred --cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 143 --DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 143 --~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
.+-+.+||+- +||..+. +||.|+-|.|....-+.|||-+
T Consensus 769 atADTVIIFDSD------WNPQNDL-----------QAqARaHRIGQkk~VnVYRLVT 809 (1373)
T KOG0384|consen 769 ATADTVIIFDSD------WNPQNDL-----------QAQARAHRIGQKKHVNVYRLVT 809 (1373)
T ss_pred cccceEEEeCCC------CCcchHH-----------HHHHHHHhhcccceEEEEEEec
Confidence 4566788975 4554332 5777888999888878899654
No 183
>KOG1015|consensus
Probab=49.11 E-value=90 Score=32.44 Aligned_cols=77 Identities=19% Similarity=0.365 Sum_probs=46.7
Q ss_pred EEccCCCChhhHHHh---cccCCCCCCCCCccceEEEecCcccceeee--cceEEEEeCCcccceeeCCccccccceEEE
Q psy2956 98 IPLYSTLPPNLQQRI---FEAAPANKPNGGIGRKVVVSTNIAETSLTI--DGVVFVIDPGFAKQKVYNPRIRVESLLVSP 172 (251)
Q Consensus 98 i~lsatl~~~~~~~~---f~~~p~~~~~g~~~rkiivst~iaetsltI--~g~~lVfd~G~~~~~~~~~~~~~~~l~~~p 172 (251)
.-+-+......+.+. |+++.... .|-++++|-..-.++.+ .+-+.+||..| ||.-+.
T Consensus 1192 yriDGst~s~~R~k~~~~FNdp~NlR-----aRl~LISTRAGsLGiNLvAANRVIIfDasW------NPSyDt------- 1253 (1567)
T KOG1015|consen 1192 YRLDGSTTSQSRKKWAEEFNDPTNLR-----ARLFLISTRAGSLGINLVAANRVIIFDASW------NPSYDT------- 1253 (1567)
T ss_pred EEecCcccHHHHHHHHHHhcCcccce-----eEEEEEeeccCccccceeecceEEEEeccc------CCccch-------
Confidence 344555555555444 66654432 56677888765544433 57788899754 443333
Q ss_pred cccchHHHHhcccCCCCCCccccc
Q psy2956 173 ISKASAQQRAGRAGRTRPGKCFRY 196 (251)
Q Consensus 173 is~~~a~qR~gragr~~~G~c~Rl 196 (251)
++.=|+-|+|.+.|-..||+
T Consensus 1254 ----QSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1254 ----QSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred ----HHHHHHHhhcCcCceeehhh
Confidence 33337888888888777884
No 184
>KOG0391|consensus
Probab=48.45 E-value=1.7e+02 Score=31.31 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
..-+|+|---...+|-+...|.. ..+..+-+-++...+.++..+....... .---+|++|--...++
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLny---------HgylY~RLDg~t~vEqRQaLmerFNaD~----RIfcfILSTrSggvGi 1342 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNY---------HGYLYVRLDGNTSVEQRQALMERFNADR----RIFCFILSTRSGGVGI 1342 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhh---------cceEEEEecCCccHHHHHHHHHHhcCCC----ceEEEEEeccCCcccc
Confidence 34588885444444443333332 3666777778877777776644333210 0123467887766666
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
.+-|..-|| .||... .|.--++||.|..|.|+++.-+.|||-+
T Consensus 1343 NLtgADTVv--------FYDsDw-------NPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1343 NLTGADTVV--------FYDSDW-------NPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred ccccCceEE--------EecCCC-------CchhhhHHHHHHHhhcCccceEEEEeec
Confidence 665533332 243321 2344578899999999999989999644
No 185
>KOG0947|consensus
Probab=44.41 E-value=25 Score=36.08 Aligned_cols=54 Identities=22% Similarity=0.168 Sum_probs=38.5
Q ss_pred cceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 126 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 126 ~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
-.|+++||.--..++.+|--..||++=. | ++ .-...-+.+..-.|.+|||||.+
T Consensus 656 lVKVLFATETFAMGVNMPARtvVF~Sl~-K---hD------G~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 656 LVKVLFATETFAMGVNMPARTVVFSSLR-K---HD------GNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred ceEEEeehhhhhhhcCCCceeEEeeehh-h---cc------CcceeecCChhHHhhhccccccc
Confidence 5789999988778888999999999622 1 11 11223455666679999999965
No 186
>PRK05580 primosome assembly protein PriA; Validated
Probab=43.14 E-value=55 Score=32.42 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAA 116 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~ 116 (251)
.+.+|+.+|..+.+.+..+++.+.+ +.++..+|+.++..++.+.|...
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~ 237 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKA 237 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHH
Confidence 4579999999999999998887542 34688899999887766665443
No 187
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=42.25 E-value=88 Score=32.71 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=19.1
Q ss_pred cceEEEecCcccceeeecceEEEEeC
Q psy2956 126 GRKVVVSTNIAETSLTIDGVVFVIDP 151 (251)
Q Consensus 126 ~rkiivst~iaetsltI~g~~lVfd~ 151 (251)
...++++|.+.|.+++++=+..+.++
T Consensus 838 ~~~i~v~Tqv~E~g~D~dfd~~~~~~ 863 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHDYDWAIADP 863 (1110)
T ss_pred CCeEEEEeeeEEEEecccCCeeeecc
Confidence 34678999999999988655555553
No 188
>PRK09401 reverse gyrase; Reviewed
Probab=42.01 E-value=42 Score=35.51 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=34.3
Q ss_pred ceEEEcccchHHHHhcccCCCCCCccccccceec----cccccceeecCc-eEEEEeCCCcc
Q psy2956 168 LLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVS----TNIAETSLTIDG-VVFVIDPGFAK 224 (251)
Q Consensus 168 l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~a----TniaEtsiti~~-v~~ViD~g~~k 224 (251)
+.+..+|... +|... +...|++ .+.++ ||+|-=.|-||+ |+|||..|.=|
T Consensus 356 i~v~~~hg~l--~~~l~--~F~~G~~---~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 356 INAELAISGF--ERKFE--KFEEGEV---DVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CcEEEEeCcH--HHHHH--HHHCCCC---CEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 4455566554 22211 2334553 46677 799999999999 89999999877
No 189
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=41.53 E-value=13 Score=36.27 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.7
Q ss_pred ccceeccccccceeecCceEEEEe
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVID 219 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD 219 (251)
..+.+||+++|..|.+|++.+||-
T Consensus 509 ~~ILVaT~vie~GvDiP~v~~VIi 532 (630)
T TIGR00643 509 VDILVATTVIEVGVDVPNATVMVI 532 (630)
T ss_pred CCEEEECceeecCcccCCCcEEEE
Confidence 368999999999999999999884
No 190
>KOG0340|consensus
Probab=41.47 E-value=11 Score=34.14 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=38.2
Q ss_pred ceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCcc
Q psy2956 168 LLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAK 224 (251)
Q Consensus 168 l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k 224 (251)
+.+..+|+. ..++|..--+|.+.+. .++.+||++|--.|-||.|-+||+-.+=+
T Consensus 279 ~r~~~lHs~m~Q~eR~~aLsrFrs~~---~~iliaTDVAsRGLDIP~V~LVvN~diPr 333 (442)
T KOG0340|consen 279 VRVVSLHSQMPQKERLAALSRFRSNA---ARILIATDVASRGLDIPTVELVVNHDIPR 333 (442)
T ss_pred eeeeehhhcchHHHHHHHHHHHhhcC---ccEEEEechhhcCCCCCceeEEEecCCCC
Confidence 345556554 4556654445555555 46899999999999999999999865533
No 191
>PRK00254 ski2-like helicase; Provisional
Probab=40.60 E-value=25 Score=34.97 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.9
Q ss_pred ccceeccccccceeecCceEEEEeC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
+++.+||+.++..+.+|++.+||..
T Consensus 322 i~VLvaT~tLa~Gvnipa~~vVI~~ 346 (720)
T PRK00254 322 IKVITATPTLSAGINLPAFRVIIRD 346 (720)
T ss_pred CeEEEeCcHHhhhcCCCceEEEECC
Confidence 5799999999999999999999953
No 192
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.47 E-value=73 Score=30.35 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=36.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAA 116 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~ 116 (251)
.+.+|+.+|...-+.+..+++.+.+ +.++..+|+.++..++.+.+...
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHH
Confidence 4579999999999999988887643 23567889999887766555443
No 193
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=35.78 E-value=39 Score=19.62 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=17.6
Q ss_pred EecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEE
Q psy2956 66 LFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIP 99 (251)
Q Consensus 66 vFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~ 99 (251)
||-|+.+|...-.+-+.. +...+.+.+=.||+|
T Consensus 2 vf~Pt~eEF~dp~~yi~~-i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 2 VFYPTMEEFKDPIKYISS-IEPEGEKYGICKIVP 34 (34)
T ss_dssp EE---HHHHS-HHHHHHH-HHHTTGGGSEEEE--
T ss_pred cccCCHHHHhCHHHHHHH-HHHHHHHCCEEEecC
Confidence 688888888877776664 444555555566654
No 194
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.18 E-value=21 Score=27.09 Aligned_cols=30 Identities=37% Similarity=0.706 Sum_probs=24.4
Q ss_pred ceeccccccceeecCceEEEEeCCCccceeeccCCCc
Q psy2956 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV 234 (251)
Q Consensus 198 ~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~ 234 (251)
-+++|+|-|.--. .|+++|.| -.+||+..+
T Consensus 38 dv~atDI~~~~a~-~g~~~v~D------DitnP~~~i 67 (129)
T COG1255 38 DVLATDINEKTAP-EGLRFVVD------DITNPNISI 67 (129)
T ss_pred cEEEEecccccCc-ccceEEEc------cCCCccHHH
Confidence 4789999998555 79999999 788888754
No 195
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=33.83 E-value=1.5e+02 Score=30.16 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=65.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEc-cCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPL-YSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~l-satl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
.|--|||.-..+..+.+.+.+..+... ..+++-.++. .+.-.+....+|+..-+ -.+|.++.+...|+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype---~~~~~a~~IT~d~~~~q~~Id~f~~ke~--------~P~IaitvdlL~TG 494 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE---YNGRYAMKITGDAEQAQALIDNFIDKEK--------YPRIAITVDLLTTG 494 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc---ccCceEEEEeccchhhHHHHHHHHhcCC--------CCceEEehhhhhcC
Confidence 356899999999999888888765433 2334444444 44444455555555222 34688999999999
Q ss_pred eeecceE-EEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 140 LTIDGVV-FVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 140 ltI~g~~-lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
+.+|.+. +||+--. -|+.-=.|..||.-|..|
T Consensus 495 iDvpev~nlVF~r~V-------------------rSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 495 VDVPEVVNLVFDRKV-------------------RSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred CCchheeeeeehhhh-------------------hhHHHHHHHhcCccccCc
Confidence 9999877 5666211 133334588888877665
No 196
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=33.32 E-value=78 Score=18.66 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.2
Q ss_pred eEEeCCCccceeeeeCCCCchhHH
Q psy2956 21 LMNVPGRTHPVEIFYTPEPERDYL 44 (251)
Q Consensus 21 vi~i~g~~~pV~~~y~~~~~~~~~ 44 (251)
...|.+.+|.|.+||.+......-
T Consensus 4 ~~kIG~Tty~V~~~F~~~s~et~~ 27 (37)
T PF14202_consen 4 EKKIGKTTYVVEVHFSETSKETMQ 27 (37)
T ss_pred EEEECCEEEEEEEEECCCccccHH
Confidence 356788899999999887655433
No 197
>KOG0949|consensus
Probab=33.04 E-value=49 Score=34.26 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=28.7
Q ss_pred ceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 127 RKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 127 rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
-.++++|.-..-++.+|=-+.||.- .+|+..|+ .-.|.+|||||.+
T Consensus 989 L~VlfaT~TLsLGiNMPCrTVvF~g--------------DsLQL~pl---ny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 989 LQVLFATETLSLGINMPCRTVVFAG--------------DSLQLDPL---NYKQMAGRAGRRG 1034 (1330)
T ss_pred eEEEEEeeehhcccCCCceeEEEec--------------cccccCch---hHHhhhccccccc
Confidence 3466777776666777766666652 23444444 2347888888854
No 198
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=31.73 E-value=1.1e+02 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.3
Q ss_pred hHHHHHhcCCCCeEEeCCC
Q psy2956 9 QHLTRQYFDNAPLMNVPGR 27 (251)
Q Consensus 9 ~~~~~~yf~~~pvi~i~g~ 27 (251)
+..+++|-.++|++-+-..
T Consensus 30 a~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 30 ARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHT-TSSEEEEEESS
T ss_pred HHHHHhhCCCCeEEEEcCc
Confidence 6778899889999877764
No 199
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=31.28 E-value=34 Score=30.84 Aligned_cols=23 Identities=4% Similarity=0.186 Sum_probs=18.9
Q ss_pred cceeccccccceeecCceEEEEe
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVID 219 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD 219 (251)
.+.+||++||-+|.||++..|.+
T Consensus 320 ~iLVaTdv~~rGiDi~~~~vi~~ 342 (357)
T TIGR03158 320 DILLGTSTVDVGVDFKRDWLIFS 342 (357)
T ss_pred CEEEEecHHhcccCCCCceEEEC
Confidence 57899999999999999854443
No 200
>PF13871 Helicase_C_4: Helicase_C-like
Probab=30.69 E-value=1.6e+02 Score=25.74 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=38.0
Q ss_pred eEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccc
Q psy2956 128 KVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIA 205 (251)
Q Consensus 128 kiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTnia 205 (251)
.+.+-++.+.|.++.+-+.=+ -|.+.+...+...|.+...+.|.-||+=|+..-.. -+|..+.||++
T Consensus 63 ~v~iis~AgstGiSlHAd~~~----------~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~-P~y~~l~t~~~ 129 (278)
T PF13871_consen 63 DVAIISDAGSTGISLHADRRV----------KNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA-PEYRFLVTDLP 129 (278)
T ss_pred eEEEEecccccccchhccccC----------CCCCceEEEEeeCCCCHHHHHHHhccccccccccC-CEEEEeecCCH
Confidence 455556777766665433222 22233445556677788888888888766432111 12557777765
No 201
>KOG1016|consensus
Probab=30.52 E-value=1.4e+02 Score=30.32 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=66.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHh---hhh------cCCCCCCeEEEEccCCCChhhHHHhcc---cCCCCCCCCCccce
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKE---IDN------LGPEAGELKCIPLYSTLPPNLQQRIFE---AAPANKPNGGIGRK 128 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~---~~~------l~~~~~~l~vi~lsatl~~~~~~~~f~---~~p~~~~~g~~~rk 128 (251)
...||+|-...-.++.+.+-|.+. ++. .++......-+-++++.++..+++..+ ..+.. ..-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~l------sWl 792 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGL------SWL 792 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCc------eee
Confidence 345888876666665544433321 110 011112334456788888888887754 33322 344
Q ss_pred EEEecCcccceeee--cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceecccccc
Q psy2956 129 VVVSTNIAETSLTI--DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAE 206 (251)
Q Consensus 129 iivst~iaetsltI--~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaE 206 (251)
+.++|-..-..+.+ .+-..|||+.| .|.+-+.|--|+-|.|...|--.|| .++-|-.|
T Consensus 793 fllstrag~lGinLIsanr~~ifda~w-----------------npchdaqavcRvyrYGQ~KpcfvYR---lVmD~~lE 852 (1387)
T KOG1016|consen 793 FLLSTRAGSLGINLISANRCIIFDACW-----------------NPCHDAQAVCRVYRYGQQKPCFVYR---LVMDNSLE 852 (1387)
T ss_pred eeehhccccccceeeccceEEEEEeec-----------------CccccchhhhhhhhhcCcCceeEEe---ehhhhhhH
Confidence 55666544444332 34556777644 2345555556888888888766667 44555445
Q ss_pred ce
Q psy2956 207 TS 208 (251)
Q Consensus 207 ts 208 (251)
-+
T Consensus 853 kk 854 (1387)
T KOG1016|consen 853 KK 854 (1387)
T ss_pred HH
Confidence 43
No 202
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.06 E-value=1.4e+02 Score=29.96 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPAN 119 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~ 119 (251)
...+|+.+|......++.+++.... +.++..|||.|+..++.+.+.....+
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rF--------g~~v~vlHS~Ls~~er~~~W~~~~~G 295 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARF--------GAKVAVLHSGLSPGERYRVWRRARRG 295 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHh--------CCChhhhcccCChHHHHHHHHHHhcC
Confidence 4589999999999999999988654 46789999999999888888776665
No 203
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=28.99 E-value=23 Score=14.33 Aligned_cols=7 Identities=43% Similarity=1.103 Sum_probs=4.5
Q ss_pred hcCCCCe
Q psy2956 15 YFDNAPL 21 (251)
Q Consensus 15 yf~~~pv 21 (251)
|+.|||+
T Consensus 2 ~i~nCP~ 8 (9)
T PF00220_consen 2 YIRNCPI 8 (9)
T ss_pred ccccCCC
Confidence 5667774
No 204
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=28.76 E-value=5.8e+02 Score=26.95 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=49.0
Q ss_pred CCCEEEecCC---HHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEE--Eec--
Q psy2956 61 EGDVLLFLTG---QEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVV--VST-- 133 (251)
Q Consensus 61 ~g~iLvFLpg---~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkii--vst-- 133 (251)
....|||+|. .+..+++.+.|+.+ ++++-..|+.- .+.++....| .-.+. +++
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~~a~~-----~~~le~F~~G------eidvLVGvAsyY 394 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSH---------GINAELIHAEK-----EEALEDFEEG------EVDVLVGVASYY 394 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEeeccc-----hhhhhhhccC------ceeEEEEecccc
Confidence 4468999997 88888888887753 67777777642 2333333444 22333 344
Q ss_pred Ccccceeeecc-eEEEEeCCcccce
Q psy2956 134 NIAETSLTIDG-VVFVIDPGFAKQK 157 (251)
Q Consensus 134 ~iaetsltI~g-~~lVfd~G~~~~~ 157 (251)
+..-..++.|- +.|+|--|.-+..
T Consensus 395 G~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 395 GVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred cceeecCCchhheeEEEEecCCcee
Confidence 33556777775 6799888876543
No 205
>KOG0346|consensus
Probab=28.70 E-value=1.9e+02 Score=27.34 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHhhc--cccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCC
Q psy2956 42 DYLEAAIRTVVQIHMC--EEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPAN 119 (251)
Q Consensus 42 ~~~~~~~~~v~~i~~~--~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~ 119 (251)
.|+--.++.++.-... .+..-..++..|+.+-+.+++..+.+...-+. .+++++-++++++.+..+....+.|
T Consensus 72 AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~---k~lr~~nl~s~~sdsv~~~~L~d~p-- 146 (569)
T KOG0346|consen 72 AYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS---KDLRAINLASSMSDSVNSVALMDLP-- 146 (569)
T ss_pred HHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH---HhhhhhhhhcccchHHHHHHHccCC--
Confidence 3555555555544332 22233578889999999998888776554443 2789999999999888887776655
Q ss_pred CCCCCccceEEEecCc-----ccc-------e---eeecceEEEEeCCccc
Q psy2956 120 KPNGGIGRKVVVSTNI-----AET-------S---LTIDGVVFVIDPGFAK 155 (251)
Q Consensus 120 ~~~g~~~rkiivst~i-----aet-------s---ltI~g~~lVfd~G~~~ 155 (251)
.++|+|.- .++ + +-++...+++--|+++
T Consensus 147 --------dIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYee 189 (569)
T KOG0346|consen 147 --------DIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEE 189 (569)
T ss_pred --------CeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHH
Confidence 36676641 111 1 2235556666678775
No 206
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=27.45 E-value=2.9e+02 Score=29.06 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=48.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ 134 (251)
.+..++-+|+..-+.+++++|.+.....+ ..+.+++ -|+.|+..+.+.+.+.-..+ .-+++++|+
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~g------dfdIlitTs 189 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESG------DFDILITTS 189 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcC------CccEEEEeH
Confidence 45688888999999999999998765544 2344455 89999998888887766655 456777664
No 207
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=26.49 E-value=80 Score=19.21 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=25.8
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEc
Q psy2956 64 VLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPL 100 (251)
Q Consensus 64 iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~l 100 (251)
+-||-|+.+|...-.+-+.. +...+.+.+-+||++=
T Consensus 2 iPvf~Pt~eEF~Dp~~yi~~-i~~~~~~yGi~KIvPP 37 (42)
T smart00545 2 IPVFYPTMEEFKDPLAYISK-IRPQAEKYGICKVVPP 37 (42)
T ss_pred CCeEcCCHHHHHCHHHHHHH-HHHHHhhCCEEEEECC
Confidence 45899999998887776664 3445666677787763
No 208
>KOG0090|consensus
Probab=26.26 E-value=30 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=16.5
Q ss_pred CCccccccceeccccccceeecCceEEEEeC
Q psy2956 190 PGKCFRYIVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 190 ~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
||+ +|++-.+.++.-- +=...+|+||+|+
T Consensus 90 PGH-~rlR~kl~e~~~~-~~~akaiVFVVDS 118 (238)
T KOG0090|consen 90 PGH-SRLRRKLLEYLKH-NYSAKAIVFVVDS 118 (238)
T ss_pred CCc-HHHHHHHHHHccc-cccceeEEEEEec
Confidence 555 3444444443221 1357789999997
No 209
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=26.13 E-value=2.7e+02 Score=26.71 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=46.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecC------
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN------ 134 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~------ 134 (251)
+|-+|..-|+..-+.+=.+.+.+.. .-|+-.+..+.+..+++++...+. ..+++++|.
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~-----~ip~~~i~~ltGev~p~~R~~~w~-----------~~kVfvaTPQvveND 121 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVT-----GIPEDEIAALTGEVRPEEREELWA-----------KKKVFVATPQVVEND 121 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHh-----CCChhheeeecCCCChHHHHHHHh-----------hCCEEEeccHHHHhH
Confidence 5556666677766666444444322 124567788888888888887776 456888874
Q ss_pred cccceeeecceE-EEEe
Q psy2956 135 IAETSLTIDGVV-FVID 150 (251)
Q Consensus 135 iaetsltI~g~~-lVfd 150 (251)
+.+--+++++++ +|||
T Consensus 122 l~~Grid~~dv~~lifD 138 (542)
T COG1111 122 LKAGRIDLDDVSLLIFD 138 (542)
T ss_pred HhcCccChHHceEEEec
Confidence 444445666654 6677
No 210
>KOG0389|consensus
Probab=25.45 E-value=7.3e+02 Score=25.46 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=54.2
Q ss_pred CeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee--cceEEEEeCCcccceeeCCccccccceEE
Q psy2956 94 ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI--DGVVFVIDPGFAKQKVYNPRIRVESLLVS 171 (251)
Q Consensus 94 ~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI--~g~~lVfd~G~~~~~~~~~~~~~~~l~~~ 171 (251)
+++.+-|-+....+.++...+...... .-.-++++|....-+|.+ .+.+.++|.. |||-.
T Consensus 801 ~~~ylRLDGsTqV~~RQ~lId~Fn~d~----difVFLLSTKAGG~GINLt~An~VIihD~d------FNP~d-------- 862 (941)
T KOG0389|consen 801 GYKYLRLDGSTQVNDRQDLIDEFNTDK----DIFVFLLSTKAGGFGINLTCANTVIIHDID------FNPYD-------- 862 (941)
T ss_pred CceEEeecCCccchHHHHHHHhhccCC----ceEEEEEeeccCcceecccccceEEEeecC------CCCcc--------
Confidence 677778888877777776644332210 023456788776666544 4556666642 44432
Q ss_pred EcccchHHHHhcccCCCCCCccccccc
Q psy2956 172 PISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 172 pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
--+|+.|+-|.|.+.|-..|||-+
T Consensus 863 ---D~QAEDRcHRvGQtkpVtV~rLIt 886 (941)
T KOG0389|consen 863 ---DKQAEDRCHRVGQTKPVTVYRLIT 886 (941)
T ss_pred ---cchhHHHHHhhCCcceeEEEEEEe
Confidence 236888999999999999999654
No 211
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=25.09 E-value=76 Score=20.99 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.6
Q ss_pred hHHHHHhcCCCCeEEeCCCccceeeee
Q psy2956 9 QHLTRQYFDNAPLMNVPGRTHPVEIFY 35 (251)
Q Consensus 9 ~~~~~~yf~~~pvi~i~g~~~pV~~~y 35 (251)
+..|++-|++-.+++..|..+||.+.-
T Consensus 9 ~~r~~e~Fp~~slvef~g~~~PvtI~C 35 (60)
T PF05265_consen 9 ASRFEEKFPHYSLVEFSGVATPVTIRC 35 (60)
T ss_pred HHHHHHHCCCceEEEEeCCCCceEEEC
Confidence 667888899988999999999999875
No 212
>KOG0385|consensus
Probab=24.99 E-value=4.4e+02 Score=26.90 Aligned_cols=101 Identities=25% Similarity=0.428 Sum_probs=55.9
Q ss_pred CeEEEEccCCCChhhHHHh---cccCCCCCCCCCccceE--EEecCcccceeee--cceEEEEeCCcccceeeCCccccc
Q psy2956 94 ELKCIPLYSTLPPNLQQRI---FEAAPANKPNGGIGRKV--VVSTNIAETSLTI--DGVVFVIDPGFAKQKVYNPRIRVE 166 (251)
Q Consensus 94 ~l~vi~lsatl~~~~~~~~---f~~~p~~~~~g~~~rki--ivst~iaetsltI--~g~~lVfd~G~~~~~~~~~~~~~~ 166 (251)
++...-+-++.+.+++.+. |+..+ ..++ .++|-...-++.+ .+.+..+|+. +||..
T Consensus 511 ~y~ycRiDGSt~~eeR~~aI~~fn~~~--------s~~FiFlLSTRAGGLGINL~aADtVIlyDSD------WNPQ~--- 573 (971)
T KOG0385|consen 511 GYEYCRLDGSTSHEEREDAIEAFNAPP--------SEKFIFLLSTRAGGLGINLTAADTVILYDSD------WNPQV--- 573 (971)
T ss_pred CceeEeecCCCCcHHHHHHHHhcCCCC--------cceEEEEEeccccccccccccccEEEEecCC------CCchh---
Confidence 3444445555555555543 33322 2344 4577666555544 3445556653 33332
Q ss_pred cceEEEcccchHHHHhcccCCCCCCccccccceecc-----ccccceeecCceEEEEeCC
Q psy2956 167 SLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVST-----NIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 167 ~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aT-----niaEtsiti~~v~~ViD~g 221 (251)
--+|++|+-|.|...|-+.|||-+.-+- .=|+.-+.++.+ ||--|
T Consensus 574 --------DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~--VIq~g 623 (971)
T KOG0385|consen 574 --------DLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKL--VIQQG 623 (971)
T ss_pred --------hhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhh--hhccC
Confidence 2368889999999999999995442110 123444556653 46666
No 213
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=24.69 E-value=1.7e+02 Score=26.78 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCCEEEecCCH--HHHHHHHHHHHHhhhhcCCCCCCeEEEEccC
Q psy2956 61 EGDVLLFLTGQ--EEIEEACKRIKKEIDNLGPEAGELKCIPLYS 102 (251)
Q Consensus 61 ~g~iLvFLpg~--~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsa 102 (251)
.+.++.+|||. .||..+.-.+.+..+.+..+.++++.++-.+
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a 226 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVA 226 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 56799999995 5788777777666666667778888775443
No 214
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=24.29 E-value=4.5e+02 Score=25.05 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=38.0
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhccc
Q psy2956 64 VLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEA 115 (251)
Q Consensus 64 iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~ 115 (251)
.||+.|+.+-..++.+.+....+.. +.++++.+++..+...|..-+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~----~~~~~~~i~GG~~~~~q~~~l~~ 149 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL----GGLRVAVVYGGVSIRKQIEALKR 149 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc----CCccEEEEECCCCHHHHHHHHhc
Confidence 8999999998888888877654332 26889999999998888877665
No 215
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=23.97 E-value=3.1e+02 Score=27.33 Aligned_cols=106 Identities=25% Similarity=0.376 Sum_probs=65.0
Q ss_pred CEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeee
Q psy2956 63 DVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142 (251)
Q Consensus 63 ~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI 142 (251)
.+|+|.+-...++-+...+... +...+-+.++++...+........... ...-+++++..+.+.+..
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~----~~~v~lls~kagg~glnL 779 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADE----EEKVFLLSLKAGGLGLNL 779 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCC----CCceEEEEecccccceee
Confidence 4999999888887766666532 266788888887666655543322210 034456777777777766
Q ss_pred cceEEE--EeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 143 DGVVFV--IDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 143 ~g~~lV--fd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
.+...| +|+ .+|| .-..+|+.|+.|.|+..+=..||+.+
T Consensus 780 t~a~~vi~~d~------~wnp-----------~~~~Qa~dRa~RigQ~~~v~v~r~i~ 820 (866)
T COG0553 780 TGADTVILFDP------WWNP-----------AVELQAIDRAHRIGQKRPVKVYRLIT 820 (866)
T ss_pred cccceEEEecc------ccCh-----------HHHHHHHHHHHHhcCcceeEEEEeec
Confidence 444333 333 1121 11236677888888888877777443
No 216
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=2.2e+02 Score=24.61 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=33.6
Q ss_pred ceeeeeCCCCc-hhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHh
Q psy2956 30 PVEIFYTPEPE-RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKE 84 (251)
Q Consensus 30 pV~~~y~~~~~-~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~ 84 (251)
+++..+++-|. .++++.+.+.+ .+.|-+.+|+|..+.+++.++.|++.
T Consensus 163 ~vDav~LDmp~PW~~le~~~~~L-------kpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 163 DVDAVFLDLPDPWNVLEHVSDAL-------KPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ccCEEEEcCCChHHHHHHHHHHh-------CCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 66666776654 34554443221 34688999999999999999998864
No 217
>KOG0339|consensus
Probab=22.97 E-value=2e+02 Score=27.80 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCCEEEe-cCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecC
Q psy2956 61 EGDVLLF-LTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134 (251)
Q Consensus 61 ~g~iLvF-Lpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ 134 (251)
.|-|+|. .|+.+-..+++. ++|.+++- -+|+++.+|...+..+|.+-+.. +-.+||+|.
T Consensus 295 ~gPi~vilvPTrela~Qi~~----eaKkf~K~-ygl~~v~~ygGgsk~eQ~k~Lk~----------g~EivVaTP 354 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFS----EAKKFGKA-YGLRVVAVYGGGSKWEQSKELKE----------GAEIVVATP 354 (731)
T ss_pred CCCeEEEEeccHHHHHHHHH----HHHHhhhh-ccceEEEeecCCcHHHHHHhhhc----------CCeEEEech
Confidence 3556555 466554444333 33333322 37999999999999999887763 456888774
No 218
>KOG1133|consensus
Probab=22.35 E-value=3.8e+02 Score=26.92 Aligned_cols=53 Identities=15% Similarity=0.342 Sum_probs=33.1
Q ss_pred cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHH
Q psy2956 29 HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83 (251)
Q Consensus 29 ~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~ 83 (251)
-|.+.-|........+...-..+.++. .-.+|.|.+|+|+.+-+..+++.+.+
T Consensus 599 ~p~eftf~~R~s~~~l~~l~~~~~nL~--~~VPgGvV~FfPSy~yL~~v~k~w~~ 651 (821)
T KOG1133|consen 599 QPLEFTFETRESPEMIKDLGSSISNLS--NAVPGGVVCFFPSYAYLGQVRKRWEQ 651 (821)
T ss_pred CceEEEeeccCChHHHHHHHHHHHHHH--hhCCCcEEEEeccHHHHHHHHHHHHh
Confidence 344444444434444443333333333 23589999999999999999998763
No 219
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.37 E-value=2.6e+02 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=35.1
Q ss_pred cCCCEEEecCCH--HHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCC
Q psy2956 60 VEGDVLLFLTGQ--EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLP 105 (251)
Q Consensus 60 ~~g~iLvFLpg~--~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~ 105 (251)
..+.+|.+|||. .||..+..-+.+....+..+.++++++.-.+.-.
T Consensus 186 ~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~ 233 (381)
T COG0763 186 ADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK 233 (381)
T ss_pred CCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH
Confidence 467799999995 5788888877777777777788998877655543
No 220
>KOG0071|consensus
Probab=20.89 E-value=1.7e+02 Score=23.25 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=7.6
Q ss_pred CchhHHHHHHHHHHHH
Q psy2956 39 PERDYLEAAIRTVVQI 54 (251)
Q Consensus 39 ~~~~~~~~~~~~v~~i 54 (251)
..+|.+++|...+..+
T Consensus 95 a~~dr~eeAr~ELh~i 110 (180)
T KOG0071|consen 95 ADRDRIEEARNELHRI 110 (180)
T ss_pred cchhhHHHHHHHHHHH
Confidence 3445555555444443
No 221
>PF05729 NACHT: NACHT domain
Probab=20.55 E-value=1.6e+02 Score=22.28 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=33.8
Q ss_pred CCCEEEecCCHHHHHHHHHH-----HHHhhhhcCCC--CCCeEEEEccCCCChhhHHHhcc
Q psy2956 61 EGDVLLFLTGQEEIEEACKR-----IKKEIDNLGPE--AGELKCIPLYSTLPPNLQQRIFE 114 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~-----L~~~~~~l~~~--~~~l~vi~lsatl~~~~~~~~f~ 114 (251)
.+.+|+++-|.+|+.+-... +...+..+... .++.++++.+.+-......+.+.
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 67899999999998874332 33333333333 46788888776655544444443
Done!