Query psy2956
Match_columns 251
No_of_seqs 261 out of 1926
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:54:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 3.1E-31 1.1E-35 258.6 16.3 192 1-199 244-442 (773)
2 2va8_A SSO2462, SKI2-type heli 99.8 1.7E-18 5.7E-23 167.6 10.8 181 1-198 179-406 (715)
3 2p6r_A Afuhel308 helicase; pro 99.7 5.2E-18 1.8E-22 163.9 10.9 177 1-198 176-386 (702)
4 2xau_A PRE-mRNA-splicing facto 99.7 1.7E-17 5.8E-22 161.9 5.4 157 92-251 238-425 (773)
5 2zj8_A DNA helicase, putative 99.6 1.7E-16 5.7E-21 153.8 6.9 178 1-198 173-385 (720)
6 2jlq_A Serine protease subunit 99.5 9.5E-15 3.2E-19 134.3 9.4 157 1-195 145-306 (451)
7 2z83_A Helicase/nucleoside tri 99.5 6.4E-15 2.2E-19 135.8 6.5 159 1-197 147-310 (459)
8 3eaq_A Heat resistant RNA depe 99.5 5.1E-14 1.7E-18 116.9 10.0 105 61-198 31-136 (212)
9 3i32_A Heat resistant RNA depe 99.5 3.3E-14 1.1E-18 124.2 9.0 130 31-198 3-133 (300)
10 3eiq_A Eukaryotic initiation f 99.4 6.4E-14 2.2E-18 125.9 4.9 160 1-198 218-385 (414)
11 3l9o_A ATP-dependent RNA helic 99.4 4.1E-13 1.4E-17 135.4 7.7 121 61-197 441-594 (1108)
12 1hv8_A Putative ATP-dependent 99.4 1.9E-12 6.4E-17 114.0 10.7 156 1-196 182-341 (367)
13 1yks_A Genome polyprotein [con 99.4 9.1E-13 3.1E-17 120.8 7.4 117 61-197 177-296 (440)
14 1s2m_A Putative ATP-dependent 99.3 9.8E-12 3.4E-16 111.2 12.9 159 1-197 198-362 (400)
15 2whx_A Serine protease/ntpase/ 99.3 1.7E-12 5.8E-17 123.7 7.9 117 61-197 355-475 (618)
16 3fht_A ATP-dependent RNA helic 99.3 1.1E-11 3.6E-16 111.1 12.1 164 1-196 204-375 (412)
17 2i4i_A ATP-dependent RNA helic 99.3 7.5E-12 2.6E-16 112.5 10.5 160 1-197 214-380 (417)
18 1xti_A Probable ATP-dependent 99.3 3.3E-11 1.1E-15 107.2 14.0 157 1-195 188-352 (391)
19 3pey_A ATP-dependent RNA helic 99.3 5.8E-12 2E-16 111.9 9.0 163 1-195 181-351 (395)
20 2db3_A ATP-dependent RNA helic 99.3 1.3E-11 4.3E-16 112.8 11.2 156 1-195 240-402 (434)
21 2wv9_A Flavivirin protease NS2 99.3 4.9E-12 1.7E-16 121.6 8.8 117 61-197 410-530 (673)
22 3o8b_A HCV NS3 protease/helica 99.3 4.3E-12 1.5E-16 121.2 8.2 114 60-198 395-512 (666)
23 2j0s_A ATP-dependent RNA helic 99.3 1.2E-11 4.2E-16 111.1 9.5 157 1-195 214-378 (410)
24 2v1x_A ATP-dependent DNA helic 99.3 2.4E-11 8.3E-16 115.2 11.8 160 1-197 204-371 (591)
25 4a4z_A Antiviral helicase SKI2 99.3 9.1E-12 3.1E-16 124.5 9.2 121 61-197 336-489 (997)
26 3rc3_A ATP-dependent RNA helic 99.2 5.1E-12 1.8E-16 121.4 6.6 116 61-198 321-443 (677)
27 2v6i_A RNA helicase; membrane, 99.2 1.1E-11 3.9E-16 113.2 6.6 109 61-190 171-279 (431)
28 3i5x_A ATP-dependent RNA helic 99.2 7.2E-11 2.5E-15 110.7 11.6 165 1-195 268-444 (563)
29 2hjv_A ATP-dependent RNA helic 99.2 1.3E-10 4.3E-15 92.1 10.3 129 29-195 8-137 (163)
30 1fuk_A Eukaryotic initiation f 99.2 4.6E-11 1.6E-15 94.8 7.4 127 31-195 4-132 (165)
31 3sqw_A ATP-dependent RNA helic 99.2 1.1E-10 3.7E-15 110.3 10.9 165 1-195 217-393 (579)
32 1fuu_A Yeast initiation factor 99.1 8.1E-12 2.8E-16 111.2 2.2 159 1-196 197-362 (394)
33 1oyw_A RECQ helicase, ATP-depe 99.1 1.4E-10 4.8E-15 108.4 10.7 157 1-196 178-339 (523)
34 2p6n_A ATP-dependent RNA helic 99.1 1E-10 3.5E-15 95.4 7.4 144 13-195 9-156 (191)
35 2xgj_A ATP-dependent RNA helic 99.1 1.4E-10 4.7E-15 116.1 9.6 121 61-197 343-496 (1010)
36 3fmp_B ATP-dependent RNA helic 99.1 1.4E-11 4.9E-16 113.4 1.7 164 1-195 271-441 (479)
37 2rb4_A ATP-dependent RNA helic 99.1 2.8E-10 9.5E-15 91.1 8.6 134 30-195 7-142 (175)
38 2z0m_A 337AA long hypothetical 99.1 1.6E-10 5.3E-15 100.6 6.9 150 2-195 165-318 (337)
39 2jgn_A DBX, DDX3, ATP-dependen 99.0 2.6E-10 8.7E-15 92.4 6.6 131 29-196 18-149 (185)
40 1t5i_A C_terminal domain of A 99.0 6.7E-10 2.3E-14 88.8 8.9 129 29-195 4-133 (172)
41 3fho_A ATP-dependent RNA helic 99.0 6.3E-11 2.1E-15 110.3 2.3 164 1-195 295-465 (508)
42 2ykg_A Probable ATP-dependent 98.9 9.4E-10 3.2E-14 105.6 7.4 109 60-198 397-514 (696)
43 2eyq_A TRCF, transcription-rep 98.9 3.9E-09 1.3E-13 107.0 10.4 159 1-196 755-918 (1151)
44 1c4o_A DNA nucleotide excision 98.9 1.3E-08 4.6E-13 97.6 13.0 107 61-195 439-545 (664)
45 2d7d_A Uvrabc system protein B 98.9 1E-08 3.5E-13 98.4 11.8 107 61-195 445-551 (661)
46 2yjt_D ATP-dependent RNA helic 98.3 3.1E-10 1.1E-14 90.4 0.0 102 61-195 30-132 (170)
47 1wp9_A ATP-dependent RNA helic 98.8 8.6E-09 2.9E-13 93.1 8.1 105 60-197 360-472 (494)
48 1gm5_A RECG; helicase, replica 98.8 4.1E-09 1.4E-13 102.7 5.4 166 1-197 520-694 (780)
49 3oiy_A Reverse gyrase helicase 98.8 8.9E-09 3E-13 92.7 7.0 97 61-194 252-359 (414)
50 4f92_B U5 small nuclear ribonu 98.8 4.8E-08 1.6E-12 102.3 13.2 180 1-194 1087-1302(1724)
51 4f92_B U5 small nuclear ribonu 98.7 6.4E-08 2.2E-12 101.4 11.5 175 1-189 248-459 (1724)
52 3tbk_A RIG-I helicase domain; 98.6 1.2E-07 3.9E-12 87.8 10.0 112 61-197 389-504 (555)
53 4a2p_A RIG-I, retinoic acid in 98.6 5.8E-08 2E-12 90.1 6.4 113 60-197 389-505 (556)
54 2va8_A SSO2462, SKI2-type heli 98.6 6.3E-09 2.1E-13 100.5 -0.4 70 170-251 315-387 (715)
55 3jux_A Protein translocase sub 98.5 3.3E-07 1.1E-11 87.8 10.9 151 2-193 414-580 (822)
56 1tf5_A Preprotein translocase 98.5 6.7E-07 2.3E-11 87.0 12.0 149 3-193 373-538 (844)
57 2z83_A Helicase/nucleoside tri 98.5 6.4E-09 2.2E-13 95.6 -2.0 101 143-251 190-293 (459)
58 1gku_B Reverse gyrase, TOP-RG; 98.5 8.2E-08 2.8E-12 96.6 5.1 124 1-154 219-352 (1054)
59 2jlq_A Serine protease subunit 98.4 1.9E-07 6.4E-12 85.6 5.6 141 93-251 140-291 (451)
60 4a2q_A RIG-I, retinoic acid in 98.4 3.2E-07 1.1E-11 89.7 7.4 113 60-197 630-746 (797)
61 4ddu_A Reverse gyrase; topoiso 98.4 2.5E-07 8.6E-12 93.4 6.8 74 61-155 309-388 (1104)
62 4a2w_A RIG-I, retinoic acid in 98.4 3.6E-07 1.2E-11 90.9 7.4 113 60-197 630-746 (936)
63 4gl2_A Interferon-induced heli 98.3 5.5E-07 1.9E-11 86.3 5.3 102 61-189 400-509 (699)
64 2fsf_A Preprotein translocase 98.3 7.6E-06 2.6E-10 79.6 13.2 118 3-144 382-507 (853)
65 2fwr_A DNA repair protein RAD2 98.1 8.4E-07 2.9E-11 81.2 2.9 105 61-203 349-454 (472)
66 2p6r_A Afuhel308 helicase; pro 98.1 7.7E-07 2.6E-11 85.7 2.3 45 196-251 323-367 (702)
67 1nkt_A Preprotein translocase 98.1 2.1E-05 7.2E-10 76.8 11.9 118 3-144 401-526 (922)
68 3rc3_A ATP-dependent RNA helic 98.0 5.3E-07 1.8E-11 86.6 -0.2 77 167-251 344-423 (677)
69 2whx_A Serine protease/ntpase/ 98.0 4.6E-06 1.6E-10 79.4 6.0 142 93-251 307-458 (618)
70 3o8b_A HCV NS3 protease/helica 98.0 9.8E-07 3.4E-11 84.3 0.1 98 143-251 396-497 (666)
71 2oca_A DAR protein, ATP-depend 98.0 5.4E-06 1.8E-10 76.5 4.9 99 61-192 347-446 (510)
72 1yks_A Genome polyprotein [con 97.9 1.1E-06 3.7E-11 80.3 -0.1 102 143-251 177-279 (440)
73 2v6i_A RNA helicase; membrane, 97.8 3.1E-06 1E-10 77.0 1.0 101 143-251 171-271 (431)
74 2wv9_A Flavivirin protease NS2 97.8 7.4E-06 2.5E-10 78.7 2.0 102 143-251 410-513 (673)
75 3h1t_A Type I site-specific re 97.7 0.00011 3.6E-09 69.2 9.7 111 60-193 438-550 (590)
76 2zj8_A DNA helicase, putative 97.7 6.2E-06 2.1E-10 79.6 1.0 46 196-251 321-366 (720)
77 3dmq_A RNA polymerase-associat 97.7 6.2E-05 2.1E-09 75.1 7.0 103 60-192 502-604 (968)
78 3eaq_A Heat resistant RNA depe 97.4 2.5E-05 8.6E-10 64.1 -0.3 75 143-222 31-108 (212)
79 1z5z_A Helicase of the SNF2/RA 97.3 0.00065 2.2E-08 57.9 8.4 97 61-190 112-211 (271)
80 3i32_A Heat resistant RNA depe 97.2 3.3E-05 1.1E-09 67.0 -1.5 76 143-223 28-106 (300)
81 1z3i_X Similar to RAD54-like; 97.1 0.003 1E-07 60.1 11.3 102 61-192 416-517 (644)
82 3eiq_A Eukaryotic initiation f 97.1 0.00013 4.6E-09 64.7 1.6 76 144-222 281-357 (414)
83 1z63_A Helicase of the SNF2/RA 96.9 0.0024 8.2E-08 58.5 8.4 102 61-192 341-442 (500)
84 3mwy_W Chromo domain-containin 96.4 0.017 5.9E-07 56.3 10.9 102 61-192 572-673 (800)
85 3fht_A ATP-dependent RNA helic 96.2 0.0022 7.6E-08 56.6 3.2 80 144-226 267-347 (412)
86 1hv8_A Putative ATP-dependent 95.9 0.0016 5.3E-08 56.5 0.6 26 197-222 290-315 (367)
87 3pey_A ATP-dependent RNA helic 95.5 0.0093 3.2E-07 52.0 3.9 26 197-222 295-320 (395)
88 3fmp_B ATP-dependent RNA helic 95.2 0.0099 3.4E-07 54.0 3.1 28 197-224 385-412 (479)
89 2i4i_A ATP-dependent RNA helic 94.8 0.019 6.5E-07 50.7 3.8 76 144-222 277-353 (417)
90 1s2m_A Putative ATP-dependent 94.7 0.027 9.2E-07 49.4 4.5 26 197-222 310-335 (400)
91 2v1x_A ATP-dependent DNA helic 94.5 0.046 1.6E-06 51.5 5.8 28 197-224 319-346 (591)
92 1oyw_A RECQ helicase, ATP-depe 94.4 0.015 5.2E-07 53.8 2.2 28 196-223 287-314 (523)
93 2w00_A HSDR, R.ECOR124I; ATP-b 94.2 0.34 1.1E-05 48.7 11.4 47 126-191 649-695 (1038)
94 2vl7_A XPD; helicase, unknown 94.0 0.08 2.7E-06 49.2 6.2 86 45-154 370-462 (540)
95 1fuu_A Yeast initiation factor 93.8 0.038 1.3E-06 48.2 3.5 26 197-222 311-336 (394)
96 2db3_A ATP-dependent RNA helic 93.5 0.069 2.4E-06 48.0 4.8 26 197-222 352-377 (434)
97 1xti_A Probable ATP-dependent 93.1 0.11 3.6E-06 45.3 5.2 26 197-222 302-327 (391)
98 1fuk_A Eukaryotic initiation f 92.4 0.025 8.5E-07 43.8 0.2 26 197-222 82-107 (165)
99 2ykg_A Probable ATP-dependent 92.3 0.02 6.7E-07 54.5 -0.8 26 197-222 463-488 (696)
100 2ipc_A Preprotein translocase 90.7 1.9 6.5E-05 42.6 11.2 73 3-82 384-464 (997)
101 2hjv_A ATP-dependent RNA helic 90.1 0.06 2.1E-06 41.5 0.2 26 197-222 87-112 (163)
102 3i5x_A ATP-dependent RNA helic 89.8 0.41 1.4E-05 44.1 5.7 27 197-223 394-420 (563)
103 3l9o_A ATP-dependent RNA helic 89.0 0.2 7E-06 50.6 3.1 46 196-251 531-576 (1108)
104 2j0s_A ATP-dependent RNA helic 88.9 0.094 3.2E-06 46.1 0.5 26 197-222 328-353 (410)
105 2yjt_D ATP-dependent RNA helic 88.3 0.085 2.9E-06 40.9 0.0 26 197-222 82-107 (170)
106 3sqw_A ATP-dependent RNA helic 88.0 0.59 2E-05 43.4 5.3 27 197-223 343-369 (579)
107 2rb4_A ATP-dependent RNA helic 87.9 0.17 5.6E-06 39.4 1.3 26 197-222 86-111 (175)
108 1gku_B Reverse gyrase, TOP-RG; 86.9 0.3 1E-05 49.1 2.8 72 143-223 275-352 (1054)
109 3fho_A ATP-dependent RNA helic 86.8 0.18 6E-06 46.3 1.0 27 197-223 409-435 (508)
110 3oiy_A Reverse gyrase helicase 86.0 0.86 2.9E-05 40.1 5.0 27 197-223 299-330 (414)
111 4a4z_A Antiviral helicase SKI2 84.4 0.32 1.1E-05 48.6 1.6 46 196-251 426-471 (997)
112 4ddu_A Reverse gyrase; topoiso 84.3 0.32 1.1E-05 49.1 1.6 74 143-224 309-388 (1104)
113 2z0m_A 337AA long hypothetical 84.1 0.24 8.1E-06 41.9 0.4 26 197-222 268-293 (337)
114 3crv_A XPD/RAD3 related DNA he 84.1 14 0.00049 33.9 12.6 88 42-153 376-471 (551)
115 2jgn_A DBX, DDX3, ATP-dependen 82.5 0.15 5.1E-06 40.3 -1.4 26 197-222 98-123 (185)
116 2p6n_A ATP-dependent RNA helic 79.9 0.17 6E-06 40.1 -1.9 26 197-222 106-131 (191)
117 2xgj_A ATP-dependent RNA helic 79.6 0.95 3.2E-05 45.3 2.9 46 196-251 433-478 (1010)
118 1t5i_A C_terminal domain of A 77.5 0.42 1.4E-05 37.1 -0.3 26 197-222 83-108 (172)
119 3llm_A ATP-dependent RNA helic 75.8 1 3.4E-05 36.6 1.6 27 92-118 206-232 (235)
120 2eyq_A TRCF, transcription-rep 75.1 2.3 7.8E-05 43.1 4.3 22 197-218 866-887 (1151)
121 4gl2_A Interferon-induced heli 70.6 0.7 2.4E-05 43.7 -0.7 25 197-221 466-490 (699)
122 4a2p_A RIG-I, retinoic acid in 67.3 2.2 7.6E-05 38.6 2.0 24 197-220 455-478 (556)
123 4a15_A XPD helicase, ATP-depen 66.9 7.5 0.00026 36.5 5.6 38 43-82 432-469 (620)
124 1c4o_A DNA nucleotide excision 66.4 1.7 6E-05 41.2 1.1 26 197-222 491-516 (664)
125 3tbk_A RIG-I helicase domain; 63.2 3.8 0.00013 36.9 2.7 25 197-221 454-478 (555)
126 4a2w_A RIG-I, retinoic acid in 59.1 3.5 0.00012 40.8 1.8 24 197-220 696-719 (936)
127 2d7d_A Uvrabc system protein B 57.5 2.3 7.7E-05 40.4 0.1 26 197-222 497-522 (661)
128 1gm5_A RECG; helicase, replica 43.6 9.8 0.00034 36.9 2.1 25 197-221 641-665 (780)
129 4a2q_A RIG-I, retinoic acid in 40.2 8 0.00028 37.3 0.9 25 197-221 696-720 (797)
130 1wp9_A ATP-dependent RNA helic 35.8 13 0.00044 32.3 1.5 26 197-222 421-446 (494)
131 3q7c_A Nucleoprotein; deddh ex 30.1 2.1E+02 0.0073 22.9 7.7 42 61-114 128-169 (243)
132 2fwr_A DNA repair protein RAD2 29.1 21 0.00071 31.6 1.7 25 197-221 396-420 (472)
133 2jv8_A Uncharacterized protein 20.8 19 0.00064 22.6 -0.2 33 206-238 18-53 (73)
134 3fe2_A Probable ATP-dependent 20.0 2.9E+02 0.0098 21.5 6.9 59 61-134 102-160 (242)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=3.1e-31 Score=258.62 Aligned_cols=192 Identities=67% Similarity=1.055 Sum_probs=175.0
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++||||+|.+.|++||+++|++.++|+.|||+++|.+.+..++++.++..+.+++..+ ..|++|||+++.++++.+++.
T Consensus 244 Il~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~g~iLVF~~~~~~i~~l~~~ 322 (773)
T 2xau_A 244 IIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATE-EAGDILLFLTGEDEIEDAVRK 322 (773)
T ss_dssp EEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHS-CSCEEEEECSCHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhc-CCCCEEEECCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999988999999898998888764 389999999999999999999
Q ss_pred HHHhhhhc--CCCCCCeEEEEccCCCChhhHHHhcccCC-----CCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 81 IKKEIDNL--GPEAGELKCIPLYSTLPPNLQQRIFEAAP-----ANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 81 L~~~~~~l--~~~~~~l~vi~lsatl~~~~~~~~f~~~p-----~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
|.+.+..+ ..+.+++.+.++|+.|+.+++.++|...+ .+ .++++++||++|++++||++.+|||+|+
T Consensus 323 L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g------~~kVlVAT~iae~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 323 ISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP------GRKVVISTNIAETSLTIDGIVYVVDPGF 396 (773)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC------CEEEEEECTHHHHTCCCTTEEEEEECSE
T ss_pred HHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC------ceEEEEeCcHHHhCcCcCCeEEEEeCCC
Confidence 98654433 12335899999999999999999999887 55 7999999999999999999999999999
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccce
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i 199 (251)
.+...|++..++..|.+.|+++++..||+|||||..+|+||++++.
T Consensus 397 ~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~ 442 (773)
T 2xau_A 397 SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 442 (773)
T ss_dssp EEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCH
T ss_pred ccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecH
Confidence 9999999999999999999999999999999999999999998863
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.76 E-value=1.7e-18 Score=167.61 Aligned_cols=181 Identities=19% Similarity=0.171 Sum_probs=127.6
Q ss_pred CeeeeccC-hHHHHHhcCCCCeEEeCCCccceeeeeC--------------CCCchhH--HHHHHHHHHHHhhccccCCC
Q psy2956 1 MQIFATRR-QHLTRQYFDNAPLMNVPGRTHPVEIFYT--------------PEPERDY--LEAAIRTVVQIHMCEEVEGD 63 (251)
Q Consensus 1 ~~~sAT~~-~~~~~~yf~~~pvi~i~g~~~pV~~~y~--------------~~~~~~~--~~~~~~~v~~i~~~~~~~g~ 63 (251)
+.||||++ .+.|.+||+ ++++..+++.+|++.++. +.....+ .......+.+.+. ..|+
T Consensus 179 i~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 254 (715)
T 2va8_A 179 LALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS---KNGQ 254 (715)
T ss_dssp EEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT---TTCC
T ss_pred EEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh---cCCC
Confidence 47999996 899999996 788999999999875542 1111000 1233444444442 3689
Q ss_pred EEEecCCHHHHHHHHHHHHHhhhh-cC---------------CCCC-----------CeEEEEccCCCChhhHHHhcccC
Q psy2956 64 VLLFLTGQEEIEEACKRIKKEIDN-LG---------------PEAG-----------ELKCIPLYSTLPPNLQQRIFEAA 116 (251)
Q Consensus 64 iLvFLpg~~ei~~~~~~L~~~~~~-l~---------------~~~~-----------~l~vi~lsatl~~~~~~~~f~~~ 116 (251)
+|||+|+.++++.+++.|...+.. .. ...+ ...+.++|+.|+.+++..++...
T Consensus 255 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f 334 (715)
T 2va8_A 255 VLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGF 334 (715)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence 999999999999999998864321 00 0000 12488899999999999999877
Q ss_pred CCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC---CCcc
Q psy2956 117 PANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKC 193 (251)
Q Consensus 117 p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~---~G~c 193 (251)
+.+ .++++++|+++++++++|++.+||++ ...|+++.+.. ..|++.++..||+|||||.+ +|.|
T Consensus 335 ~~g------~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 401 (715)
T 2va8_A 335 RQR------KIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGES 401 (715)
T ss_dssp HTT------CSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEE
T ss_pred HcC------CCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 766 78999999999999999999999997 34566543322 67899999999999999988 8999
Q ss_pred ccccc
Q psy2956 194 FRYIV 198 (251)
Q Consensus 194 ~Rl~~ 198 (251)
|+++.
T Consensus 402 ~~l~~ 406 (715)
T 2va8_A 402 IVVVR 406 (715)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 88654
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.74 E-value=5.2e-18 Score=163.91 Aligned_cols=177 Identities=17% Similarity=0.146 Sum_probs=133.7
Q ss_pred CeeeeccC-hHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHH---------HHHHHHHHHhhccccCCCEEEecCC
Q psy2956 1 MQIFATRR-QHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLE---------AAIRTVVQIHMCEEVEGDVLLFLTG 70 (251)
Q Consensus 1 ~~~sAT~~-~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~---------~~~~~v~~i~~~~~~~g~iLvFLpg 70 (251)
+.||||++ .+.|.+||+ ++++..+++.+|++.++...+...+.+ .....+.+.+. ..|++|||+++
T Consensus 176 i~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s 251 (702)
T 2p6r_A 176 IGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA---ENGGVLVFEST 251 (702)
T ss_dssp EEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH---TTCCEEEECSS
T ss_pred EEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh---cCCCEEEEcCC
Confidence 46999998 899999996 888999999999987654322111100 02233333332 37899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCC---------------------CeEEEEccCCCChhhHHHhcccCCCCCCCCCccceE
Q psy2956 71 QEEIEEACKRIKKEIDNLGPEAG---------------------ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKV 129 (251)
Q Consensus 71 ~~ei~~~~~~L~~~~~~l~~~~~---------------------~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rki 129 (251)
.++++.+++.|...+........ ...+.++|+.|+.+++..++...+.+ .+++
T Consensus 252 ~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g------~~~v 325 (702)
T 2p6r_A 252 RRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG------NIKV 325 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT------SCCE
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC------CCeE
Confidence 99999999998865432111100 12477899999999999998877766 7889
Q ss_pred EEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC---CCccccccc
Q psy2956 130 VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRYIV 198 (251)
Q Consensus 130 ivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~---~G~c~Rl~~ 198 (251)
+++|+++++++++|++.+||++ ...|+. . ..|++.++..||+|||||.+ +|.||+++.
T Consensus 326 lvaT~~l~~Gidip~~~~VI~~----~~~yd~---~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 326 VVATPTLAAGVNLPARRVIVRS----LYRFDG---Y----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp EEECSTTTSSSCCCBSEEEECC----SEEESS---S----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred EEECcHHhccCCCCceEEEEcC----ceeeCC---C----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999997 345651 1 67899999999999999988 899988654
No 4
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.68 E-value=1.7e-17 Score=161.88 Aligned_cols=157 Identities=45% Similarity=0.517 Sum_probs=111.4
Q ss_pred CCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEec-----Ccc----cceee-----ecceEEEEeCCcccce
Q psy2956 92 AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST-----NIA----ETSLT-----IDGVVFVIDPGFAKQK 157 (251)
Q Consensus 92 ~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst-----~ia----etslt-----I~g~~lVfd~G~~~~~ 157 (251)
+++++++.||||++.+.+.++|+.++...++|+...--+... +.. +..+. -+|.++||.+|..+..
T Consensus 238 ~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 238 RPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp CTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred CCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 468999999999999999999987776555543211111111 111 11111 1689999999987654
Q ss_pred eeCCc-----------cccccceEEEcccc--hHHH-HhcccCCC---CCCccccccceeccccccceeecCceEEEEeC
Q psy2956 158 VYNPR-----------IRVESLLVSPISKA--SAQQ-RAGRAGRT---RPGKCFRYIVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 158 ~~~~~-----------~~~~~l~~~pis~~--~a~q-R~gragr~---~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
..... .....+.+.++|.. ..+| ++....+. ..|. +++++|||+||++|+||+|++|||+
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~---~kVlVAT~iae~GidIp~v~~VId~ 394 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG---RKVVISTNIAETSLTIDGIVYVVDP 394 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC---EEEEEECTHHHHTCCCTTEEEEEEC
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc---eEEEEeCcHHHhCcCcCCeEEEEeC
Confidence 32111 11245678888875 2222 23332221 1454 5899999999999999999999999
Q ss_pred CCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 221 GFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 221 g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
|+.|++.|||++|+++|.++|+|++++.||+
T Consensus 395 g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~ 425 (773)
T 2xau_A 395 GFSKQKVYNPRIRVESLLVSPISKASAQQRA 425 (773)
T ss_dssp SEEEEEEEETTTTEEEEEEEECCHHHHHHHH
T ss_pred CCccceeeccccCccccccccCCHHHHHhhc
Confidence 9999999999999999999999999999994
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.63 E-value=1.7e-16 Score=153.79 Aligned_cols=178 Identities=15% Similarity=0.094 Sum_probs=129.0
Q ss_pred Ceeeecc-ChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhH-------HHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATR-RQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDY-------LEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~-~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~-------~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
+.||||+ |.+.+.+||+ ++.+..+++.+|++.++...+..++ .......+.+.+. ..+++|||+++.+
T Consensus 173 i~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~sr~ 248 (720)
T 2zj8_A 173 IGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR---KKKGALIFVNMRR 248 (720)
T ss_dssp EEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH---TTCCEEEECSCHH
T ss_pred EEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh---CCCCEEEEecCHH
Confidence 4699999 5899999995 6678888898888765422111000 1112223333332 3689999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCC---------C---------------CeEEEEccCCCChhhHHHhcccCCCCCCCCCccce
Q psy2956 73 EIEEACKRIKKEIDNLGPEA---------G---------------ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRK 128 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~---------~---------------~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rk 128 (251)
+++.+++.|.+.+....... . ...+.++|+.|+.+++..++...+.+ .++
T Consensus 249 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g------~~~ 322 (720)
T 2zj8_A 249 KAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKG------IIK 322 (720)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT------SSC
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCC------CCe
Confidence 99999999876533211000 0 12388999999999999998887766 788
Q ss_pred EEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC---CCccccccc
Q psy2956 129 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRYIV 198 (251)
Q Consensus 129 iivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~---~G~c~Rl~~ 198 (251)
++++|++++.++++|++.+||+.+ ..|+ ..+ ..|++.++..||+|||||.+ +|+||+++.
T Consensus 323 vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 323 AVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp EEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred EEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999965 2354 111 36889999999999999987 788987543
No 6
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.55 E-value=9.5e-15 Score=134.33 Aligned_cols=157 Identities=21% Similarity=0.284 Sum_probs=118.0
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++||||++.+.+..++++++++.++ +.+|...+. .. .++ + . +..|.+|||+++.++++++++.
T Consensus 145 i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~~~-~~--~~~-------l---~---~~~~~~lVF~~s~~~a~~l~~~ 207 (451)
T 2jlq_A 145 IFMTATPPGSTDPFPQSNSPIEDIE-REIPERSWN-TG--FDW-------I---T---DYQGKTVWFVPSIKAGNDIANC 207 (451)
T ss_dssp EEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSCCS-SS--CHH-------H---H---HCCSCEEEECSSHHHHHHHHHH
T ss_pred EEEccCCCccchhhhcCCCceEecC-ccCCchhhH-HH--HHH-------H---H---hCCCCEEEEcCCHHHHHHHHHH
Confidence 4799999988877777788888775 445533221 10 111 1 1 1267899999999999999998
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
|... ++.+..+|+.+. .+.+.....+ ..+++++||+++.+++||+ .+||+.|..+...|+
T Consensus 208 L~~~---------g~~~~~lh~~~~----~~~~~~f~~g------~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d 267 (451)
T 2jlq_A 208 LRKS---------GKRVIQLSRKTF----DTEYPKTKLT------DWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL 267 (451)
T ss_dssp HHTT---------TCCEEEECTTTH----HHHGGGGGSS------CCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE
T ss_pred HHHc---------CCeEEECCHHHH----HHHHHhhccC------CceEEEECCHHHhCcCCCC-CEEEECCCccccccc
Confidence 8742 567888998755 3444444444 6789999999999999999 999999998888776
Q ss_pred CccccccceE---EEcccchHHHHhcccCCCC--CCcccc
Q psy2956 161 PRIRVESLLV---SPISKASAQQRAGRAGRTR--PGKCFR 195 (251)
Q Consensus 161 ~~~~~~~l~~---~pis~~~a~qR~gragr~~--~G~c~R 195 (251)
..+...+.. .|.+.++..||+||+||.+ +|.||.
T Consensus 268 -~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 268 -TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp -CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred -ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 335556665 8999999999999999988 677765
No 7
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.53 E-value=6.4e-15 Score=135.78 Aligned_cols=159 Identities=22% Similarity=0.251 Sum_probs=109.4
Q ss_pred CeeeeccChHHHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKR 80 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~ 80 (251)
++||||++.+...-...+.|++.++. .+|.+.+. ..++. + . +..|.+|||+++.++++++++.
T Consensus 147 il~SAT~~~~~~~~~~~~~pi~~~~~-~~~~~~~~------~~~~~----l---~---~~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 147 IFMTATPPGTTDPFPDSNAPIHDLQD-EIPDRAWS------SGYEW----I---T---EYAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EEECSSCTTCCCSSCCCSSCEEEEEC-CCCSSCCS------SCCHH----H---H---HCCSCEEEECSCHHHHHHHHHH
T ss_pred EEEEcCCCcchhhhccCCCCeEEecc-cCCcchhH------HHHHH----H---H---hcCCCEEEEeCChHHHHHHHHH
Confidence 47999998765433334567765542 22222111 00111 1 0 1267899999999999999998
Q ss_pred HHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeC
Q psy2956 81 IKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYN 160 (251)
Q Consensus 81 L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~ 160 (251)
|... ++++..+|+. ++.+.+.....+ ..+++++||+++.+++||+ .+||++|......++
T Consensus 210 L~~~---------g~~v~~lh~~----~R~~~~~~f~~g------~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~ 269 (459)
T 2z83_A 210 LQRA---------GKKVIQLNRK----SYDTEYPKCKNG------DWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL 269 (459)
T ss_dssp HHHT---------TCCEEEESTT----CCCCCGGGSSSC------CCSEEEESSCC---CCCSC-SEEEECCEECCEEEE
T ss_pred HHhc---------CCcEEecCHH----HHHHHHhhccCC------CceEEEECChHHhCeecCC-CEEEECCcccccccc
Confidence 8753 5778889984 455566665555 6789999999999999999 999999987766654
Q ss_pred CccccccceE---EEcccchHHHHhcccCCCC--CCcccccc
Q psy2956 161 PRIRVESLLV---SPISKASAQQRAGRAGRTR--PGKCFRYI 197 (251)
Q Consensus 161 ~~~~~~~l~~---~pis~~~a~qR~gragr~~--~G~c~Rl~ 197 (251)
. .+...+.. .|.+.++..||+||+||.+ +|.||.++
T Consensus 270 ~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~ 310 (459)
T 2z83_A 270 E-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYG 310 (459)
T ss_dssp C-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred c-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEE
Confidence 2 13334444 8999999999999999986 89887643
No 8
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.51 E-value=5.1e-14 Score=116.85 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=89.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||+++..+++.+.+.|... ++.+..+|+.++.+++.+.+.....+ ..+++++||++++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g------~~~vlvaT~~~~~Gi 95 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQG------EVRVLVATDVAARGL 95 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSS------SCCEEEECTTTTCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCC------CCeEEEecChhhcCC
Confidence 689999999999999999988753 67889999999999999988776665 678999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYIV 198 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~~ 198 (251)
+||++.+||+.|. |.+.....||+||+||.+ +|.|+.++.
T Consensus 96 di~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~ 136 (212)
T 3eaq_A 96 DIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYG 136 (212)
T ss_dssp SCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEEC
T ss_pred CCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEc
Confidence 9999999999654 345667789999999985 799977553
No 9
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.51 E-value=3.3e-14 Score=124.21 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=99.6
Q ss_pred eeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHH
Q psy2956 31 VEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQ 110 (251)
Q Consensus 31 V~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~ 110 (251)
++.+|...+..+.++...+.+ +.+ ..+.+|||+++.++++++++.|... ++.+..+|+.++.+++.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll-~~~----~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~ 68 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLL-YVA----SPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERE 68 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHH-HHH----CCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHH-Hhc----CCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHH
Confidence 455666666666666554332 222 2788999999999999999988642 67899999999999999
Q ss_pred HhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-
Q psy2956 111 RIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR- 189 (251)
Q Consensus 111 ~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~- 189 (251)
+.+.....+ ..+++++||+++++++||++.+||+.|. |.+..+..||+||+||.+
T Consensus 69 ~~~~~f~~g------~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 69 RVMGAFRQG------EVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp HHHHHHHHT------SCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC----
T ss_pred HHHHHhhcC------CceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCC
Confidence 998776665 6789999999999999999999999654 335567789999999985
Q ss_pred CCccccccc
Q psy2956 190 PGKCFRYIV 198 (251)
Q Consensus 190 ~G~c~Rl~~ 198 (251)
+|.|+.++.
T Consensus 125 ~G~~i~l~~ 133 (300)
T 3i32_A 125 GGRVVLLYG 133 (300)
T ss_dssp -CEEEEEEC
T ss_pred CceEEEEeC
Confidence 899987553
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.43 E-value=6.4e-14 Score=125.86 Aligned_cols=160 Identities=13% Similarity=0.293 Sum_probs=103.4
Q ss_pred CeeeeccChHHH---HHhcCCCCeEEeCCCccc---eeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQHLT---RQYFDNAPLMNVPGRTHP---VEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~~~~---~~yf~~~pvi~i~g~~~p---V~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+.||||+..+.. ..|+.++..+.+.....+ +..+|......+ .+.. +.++.... ..+.+|||+++.++
T Consensus 218 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-~~~~~lvf~~~~~~ 292 (414)
T 3eiq_A 218 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT----LCDLYETL-TITQAVIFINTRRK 292 (414)
T ss_dssp EEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHH----HHHHHHSS-CCSSCEEECSCHHH
T ss_pred EEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHH----HHHHHHhC-CCCcEEEEeCCHHH
Confidence 479999986554 567766666666554322 333443333222 2222 22333222 36789999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++.+++.|... ++.+..+|+.++.+++.+.+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 293 ~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g------~~~vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 293 VDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSG------SSRVLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp HHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC---------CEEECSSCC--CCGGGCSCEEESSC
T ss_pred HHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcC------CCcEEEECCccccCCCccCCCEEEEeCC
Confidence 99999988752 67789999999999999888777665 6789999999999999999999998543
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccccc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYIV 198 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~~ 198 (251)
|.+.....||+||+||.+ +|.|+.++.
T Consensus 358 ------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 358 ------------------PTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp ------------------CSSTHHHHHHSCCC-------CEEEEEC
T ss_pred ------------------CCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 335566789999999984 799977543
No 11
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.1e-13 Score=135.36 Aligned_cols=121 Identities=22% Similarity=0.136 Sum_probs=89.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcC---------------------CCCCC-------e--EEEEccCCCChhhHH
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLG---------------------PEAGE-------L--KCIPLYSTLPPNLQQ 110 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~---------------------~~~~~-------l--~vi~lsatl~~~~~~ 110 (251)
.+.+|||+++..+++.+++.|...--... ...+. + .+..+|+.|+...+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 56899999999999999888753210000 00000 1 178999999999999
Q ss_pred HhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-
Q psy2956 111 RIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR- 189 (251)
Q Consensus 111 ~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~- 189 (251)
.++.....+ ..+++++|++++.+++||++.+||+... .|+. -...|++.++..||+|||||.+
T Consensus 521 ~v~~~F~~G------~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~------~~~r~iS~~eyiQr~GRAGR~G~ 584 (1108)
T 3l9o_A 521 VIEILFQEG------FLKVLFATETFSIGLNMPAKTVVFTSVR----KWDG------QQFRWVSGGEYIQMSGRAGRRGL 584 (1108)
T ss_dssp HHHHHHHHT------CCCEEEEESCCCSCCCC--CEEEESCSE----EESS------SCEEECCHHHHHHHHHHSCCSSS
T ss_pred HHHHHHhCC------CCeEEEECcHHhcCCCCCCceEEEecCc----ccCc------cccccCCHHHHHHhhcccCCCCC
Confidence 888776666 6789999999999999999999998532 1222 2346889999999999999987
Q ss_pred --CCcccccc
Q psy2956 190 --PGKCFRYI 197 (251)
Q Consensus 190 --~G~c~Rl~ 197 (251)
+|.||.++
T Consensus 585 d~~G~~ill~ 594 (1108)
T 3l9o_A 585 DDRGIVIMMI 594 (1108)
T ss_dssp CSSEEEEEEE
T ss_pred CCceEEEEEe
Confidence 78887643
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.37 E-value=1.9e-12 Score=114.00 Aligned_cols=156 Identities=18% Similarity=0.297 Sum_probs=116.5
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEA 77 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~ 77 (251)
+.||||+..+ .+..|+++...+..... .+++..|......+.++...+.+ . ...+.+|||+++.++++++
T Consensus 182 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l----~--~~~~~~lvf~~~~~~~~~l 254 (367)
T 1hv8_A 182 LLFSATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNENERFEALCRLL----K--NKEFYGLVFCKTKRDTKEL 254 (367)
T ss_dssp EEECSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCGGGHHHHHHHHH----C--STTCCEEEECSSHHHHHHH
T ss_pred EEEeeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeChHHHHHHHHHHH----h--cCCCcEEEEECCHHHHHHH
Confidence 4689999965 44578877666555433 45666665555555555444322 1 2367899999999999999
Q ss_pred HHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccce
Q psy2956 78 CKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQK 157 (251)
Q Consensus 78 ~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~ 157 (251)
++.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 255 ~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~------~~~vlv~T~~~~~Gid~~~~~~Vi~~~~---- 315 (367)
T 1hv8_A 255 ASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQK------KIRILIATDVMSRGIDVNDLNCVINYHL---- 315 (367)
T ss_dssp HHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTT------SSSEEEECTTHHHHCCCSCCSEEEESSC----
T ss_pred HHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcC------CCeEEEECChhhcCCCcccCCEEEEecC----
Confidence 9988753 57789999999999888877665544 5679999999999999999999998543
Q ss_pred eeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 158 VYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 158 ~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
|.+.....||+||+||.+ +|.|+.+
T Consensus 316 --------------~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 316 --------------PQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp --------------CSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred --------------CCCHHHhhhcccccccCCCccEEEEE
Confidence 345667789999999985 7888653
No 13
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.35 E-value=9.1e-13 Score=120.78 Aligned_cols=117 Identities=24% Similarity=0.273 Sum_probs=89.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||+|+.++++++++.|... ++++..+|+. ++.+.+.....+ ..+++++|++++.++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg~----~R~~~~~~F~~g------~~~vLVaT~v~e~Gi 237 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNRK----TFEREYPTIKQK------KPDFILATDIAEMGA 237 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCSS----SCC--------C------CCSEEEESSSTTCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecch----hHHHHHhhhcCC------CceEEEECChhheee
Confidence 678999999999999999988753 5779999983 344444444444 567999999999999
Q ss_pred eecceEEEEeCCcccceee-CCccccccceEEEcccchHHHHhcccCCC--CCCcccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVY-NPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRYI 197 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~-~~~~~~~~l~~~pis~~~a~qR~gragr~--~~G~c~Rl~ 197 (251)
++| +.+||++|.....++ +...++......|.+.++..||+||+||. .+|.||.++
T Consensus 238 Dip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 238 NLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp TCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 999 999999999887766 33334444566788889999999999996 489997754
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.33 E-value=9.8e-12 Score=111.23 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=111.6
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCCc--cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGRT--HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~~--~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
+.||||+... .+..++.++..+.+.... ..+..+|......+.+..... ++..+ ..+.+|||+++.++++
T Consensus 198 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~~~~~----~~~~~lVf~~~~~~~~ 272 (400)
T 1s2m_A 198 LLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNT-LFSKL----QINQAIIFCNSTNRVE 272 (400)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHH-HHHHS----CCSEEEEECSSHHHHH
T ss_pred EEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHH-HHhhc----CCCcEEEEEecHHHHH
Confidence 4689999844 345666655444443322 334445544444444433322 22221 3578999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccc
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~ 155 (251)
.+++.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 273 ~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g------~~~vLv~T~~~~~Gidip~~~~Vi~~~~-- 335 (400)
T 1s2m_A 273 LLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQG------KVRTLVCSDLLTRGIDIQAVNVVINFDF-- 335 (400)
T ss_dssp HHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTT------SSSEEEESSCSSSSCCCTTEEEEEESSC--
T ss_pred HHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcC------CCcEEEEcCccccCCCccCCCEEEEeCC--
Confidence 999988753 56788999999999888887665544 5679999999999999999999998532
Q ss_pred ceeeCCccccccceEEEcccchHHHHhcccCCC-CCCcccccc
Q psy2956 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRYI 197 (251)
Q Consensus 156 ~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~-~~G~c~Rl~ 197 (251)
|.+...-.||+||+||. ++|.|+.++
T Consensus 336 ----------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 336 ----------------PKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp ----------------CSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred ----------------CCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 34555678999999998 478887644
No 15
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.33 E-value=1.7e-12 Score=123.73 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=91.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||+++.++++++++.|... .+++..+|+. ++.+.+.....+ ..+++++||++++++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g------~~~VLVaTdv~~rGi 415 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLT------DWDFVVTTDISEMGA 415 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHS------CCSEEEECGGGGTTC
T ss_pred CCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCC------CcEEEEECcHHHcCc
Confidence 678999999999999999998753 5678889974 444555554444 578999999999999
Q ss_pred eecceEEEEeCCcccceee--CCccccccceEEEcccchHHHHhcccCCCC--CCcccccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVY--NPRIRVESLLVSPISKASAQQRAGRAGRTR--PGKCFRYI 197 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~--~~~~~~~~l~~~pis~~~a~qR~gragr~~--~G~c~Rl~ 197 (251)
+|| +.+|||+|......+ +...++......|.+.++..||+||+||.+ +|.||.+.
T Consensus 416 Di~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 416 NFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp CCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 997 999999998655443 222234456677999999999999999985 78886543
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.32 E-value=1.1e-11 Score=111.08 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=112.8
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCCc---cceeeeeCCCCch-hHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGRT---HPVEIFYTPEPER-DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~-~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+.||||+..+ ....++.++..+.+.... ..+..+|...... +.+..... +.... ..+.+|||+++.++
T Consensus 204 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~-~~~~~lvf~~~~~~ 278 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN----LYGAI-TIAQAMIFCHTRKT 278 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH----HHHHH-SSSEEEEECSSHHH
T ss_pred EEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH----HHhhc-CCCCEEEEeCCHHH
Confidence 4799999964 444777666666665432 3344444433332 23332222 22111 25689999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++.+++.|... +..+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 279 ~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g------~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 279 ASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREG------KEKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp HHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTT------SCSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred HHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCC------CCcEEEEcCccccCCCccCCCEEEEECC
Confidence 99999988753 56789999999999998887766655 5679999999999999999999998654
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
.....+ +.+...-.||+||+||.+ +|.|+.+
T Consensus 344 p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~ 375 (412)
T 3fht_A 344 PVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNM 375 (412)
T ss_dssp CBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCCCC------------CcchheeecccCcccCCCCCceEEEE
Confidence 221110 123456689999999965 4777553
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.30 E-value=7.5e-12 Score=112.50 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=108.4
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCC---ccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGR---THPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~---~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+.||||+..+ .+..|+++.-.+.+... ...+...|......+......+.+ ......+.+|||+++.+++
T Consensus 214 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~lVf~~~~~~~ 289 (417)
T 2i4i_A 214 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLL----NATGKDSLTLVFVETKKGA 289 (417)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHH----HTCCTTCEEEEECSSHHHH
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHH----HhcCCCCeEEEEECCHHHH
Confidence 4689999853 44566665444444322 123333343333344433333222 2122356799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+++++.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 290 ~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g------~~~vlvaT~~~~~Gidip~v~~Vi~~~~- 353 (417)
T 2i4i_A 290 DSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSG------KSPILVATAVAARGLDISNVKHVINFDL- 353 (417)
T ss_dssp HHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHT------SSCEEEECHHHHTTSCCCCEEEEEESSC-
T ss_pred HHHHHHHHHC---------CCCeeEecCCCCHHHHHHHHHHHHcC------CCCEEEECChhhcCCCcccCCEEEEEcC-
Confidence 9999988753 57789999999999888877655444 5679999999999999999999998543
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYI 197 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~ 197 (251)
|.+...-.||+||+||.+ +|.|+.++
T Consensus 354 -----------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 354 -----------------PSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp -----------------CSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred -----------------CCCHHHHHHhcCccccCCCCceEEEEE
Confidence 234556689999999985 58876544
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.30 E-value=3.3e-11 Score=107.24 Aligned_cols=157 Identities=16% Similarity=0.274 Sum_probs=112.9
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCc----cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRT----HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~----~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+.||||+.. +.+..|++++..+.+.... ..+..+|......+........+ ..+ ..+.+|||.++.++
T Consensus 188 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~----~~~~~lvf~~~~~~ 262 (391)
T 1xti_A 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL-DVL----EFNQVVIFVKSVQR 262 (391)
T ss_dssp EEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH-HHS----CCSEEEEECSCHHH
T ss_pred EEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHH-Hhc----CCCcEEEEeCcHHH
Confidence 468999984 4556777766666655432 33444555444444444333322 221 35789999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++.+++.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||..+.
T Consensus 263 ~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~------~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 263 CIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDF------QRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTT------CCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred HHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcC------CCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 99999988753 56788999999999888877665544 5679999999999999999999998543
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|.+...-.||+||+||.+ +|.|+.
T Consensus 328 ------------------p~s~~~~~Qr~GR~~R~g~~g~~~~ 352 (391)
T 1xti_A 328 ------------------PEDSDTYLHRVARAGRFGTKGLAIT 352 (391)
T ss_dssp ------------------CSSHHHHHHHHCBCSSSCCCCEEEE
T ss_pred ------------------CCCHHHHHHhcccccCCCCceEEEE
Confidence 234556789999999974 677754
No 19
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.29 E-value=5.8e-12 Score=111.92 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=111.9
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCcc---ceeeeeCCCCch-hHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRTH---PVEIFYTPEPER-DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~~---pV~~~y~~~~~~-~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+.||||+.. +....++.+...+.+..... .+...|...... +... .+..+.... ..+.+|||+++.++
T Consensus 181 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~-~~~~~lvf~~~~~~ 255 (395)
T 3pey_A 181 VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD----VLTELYGLM-TIGSSIIFVATKKT 255 (395)
T ss_dssp EEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH----HHHHHHTTT-TSSEEEEECSCHHH
T ss_pred EEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH----HHHHHHHhc-cCCCEEEEeCCHHH
Confidence 479999984 34446666666666655433 333344333222 2222 222222221 35789999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++.+++.|... +..+..+|+.++.+++.+.+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 256 ~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g------~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 256 ANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFREG------RSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp HHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTT------SCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred HHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCC------CCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 99999988753 56788999999999988887766555 5679999999999999999999998543
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCCC-Ccccc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP-GKCFR 195 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~-G~c~R 195 (251)
.. +...+.+...-.||+||+||.+. |.|+-
T Consensus 321 p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 321 PT------------LANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp CB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred CC------------CCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 21 11123456677899999999764 66643
No 20
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.29 E-value=1.3e-11 Score=112.76 Aligned_cols=156 Identities=14% Similarity=0.211 Sum_probs=110.2
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCC---CccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPG---RTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g---~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+..+ ....|+.+...+.+.. ....++..+......+......+.+.. . .+.+|||+++..++
T Consensus 240 l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~----~--~~~~lVF~~t~~~a 313 (434)
T 2db3_A 240 LMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSE----Q--ADGTIVFVETKRGA 313 (434)
T ss_dssp EEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHH----C--CTTEEEECSSHHHH
T ss_pred EEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHh----C--CCCEEEEEeCcHHH
Confidence 4799999844 4456776655555543 234555555444444444433332211 1 33499999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... ++.+..+|+.++.+++.+.+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 314 ~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g------~~~vLvaT~v~~rGlDi~~v~~VI~~d~- 377 (434)
T 2db3_A 314 DFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNG------SMKVLIATSVASRGLDIKNIKHVINYDM- 377 (434)
T ss_dssp HHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTS------SCSEEEECGGGTSSCCCTTCCEEEESSC-
T ss_pred HHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcC------CCcEEEEchhhhCCCCcccCCEEEEECC-
Confidence 9999988753 67789999999999988887766555 5679999999999999999999999432
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|.+...-.||.||+||.+ +|.|+-
T Consensus 378 -----------------p~~~~~y~qriGR~gR~g~~G~a~~ 402 (434)
T 2db3_A 378 -----------------PSKIDDYVHRIGRTGRVGNNGRATS 402 (434)
T ss_dssp -----------------CSSHHHHHHHHTTSSCTTCCEEEEE
T ss_pred -----------------CCCHHHHHHHhcccccCCCCCEEEE
Confidence 224445679999999974 576644
No 21
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.29 E-value=4.9e-12 Score=121.55 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=93.1
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||+++.++++++++.|... ++++..+|+. ++.+.+.....+ ..+++++|++++.++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg~----eR~~v~~~F~~g------~~~VLVaTdv~e~GI 470 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNRK----SYDTEYPKCKNG------DWDFVITTDISEMGA 470 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSS----SHHHHGGGGGTC------CCSEEEECGGGGTTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeChH----HHHHHHHHHHCC------CceEEEECchhhcce
Confidence 678999999999999999988742 6789999983 566666665555 678999999999999
Q ss_pred eecceEEEEeCCcccce--eeCCccccccceEEEcccchHHHHhcccCCC--CCCcccccc
Q psy2956 141 TIDGVVFVIDPGFAKQK--VYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRYI 197 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~--~~~~~~~~~~l~~~pis~~~a~qR~gragr~--~~G~c~Rl~ 197 (251)
++| +.+||+.|..... .|+...+...+...|.+.++..||+||+||. .+|.||.++
T Consensus 471 Dip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 471 NFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred eeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 999 9999999965443 3454434444556899999999999999998 478887653
No 22
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.29 E-value=4.3e-12 Score=121.20 Aligned_cols=114 Identities=26% Similarity=0.398 Sum_probs=93.7
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
..+.+|||+++.++++++.+.|.+. ++++..+|+.++.+++ +. + +++++++||+++.+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~er---~~----~------~~~VLVATdVaerG 452 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSVI---PT----I------GDVVVVATDALMTG 452 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGGS---CS----S------SCEEEEECTTHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHHH---Hh----C------CCcEEEECChHHcc
Confidence 3788999999999999999998752 6789999999998752 21 2 56999999999999
Q ss_pred eeecceEEEEeCCccccee----eCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 140 LTIDGVVFVIDPGFAKQKV----YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~----~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
++|| +.+||+.|+.+..+ |||..++.. ...|.+.++..||+||+||..+|+ |.++.
T Consensus 453 IDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt 512 (666)
T 3o8b_A 453 YTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVT 512 (666)
T ss_dssp CCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESC
T ss_pred CCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEe
Confidence 9997 99999999888665 455555433 468999999999999999988888 76554
No 23
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.26 E-value=1.2e-11 Score=111.08 Aligned_cols=157 Identities=14% Similarity=0.304 Sum_probs=108.7
Q ss_pred CeeeeccChHHH---HHhcCCCCeEEeCCCc---cceeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQHLT---RQYFDNAPLMNVPGRT---HPVEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~~~~---~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+.||||+..+.. ..|+.++..+.+.... ..+..+|......+ ......+ ++..+ ..+.+|||+++.++
T Consensus 214 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~~~~~----~~~~~lVf~~~~~~ 288 (410)
T 2j0s_A 214 VLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD-LYDTL----TITQAVIFCNTKRK 288 (410)
T ss_dssp EEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHH-HHHHH----TSSEEEEECSSHHH
T ss_pred EEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHH-HHHhc----CCCcEEEEEcCHHH
Confidence 479999986543 4666655445444322 33444444333233 2232222 22222 25679999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++.+.+.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 289 ~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g------~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 289 VDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG------ASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHT------SSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred HHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCC------CCCEEEECChhhCcCCcccCCEEEEECC
Confidence 99999988753 56789999999999888877655544 5679999999999999999999998542
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCC-CCCcccc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 195 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~-~~G~c~R 195 (251)
|.+...-.||.||+||. ++|.|+.
T Consensus 354 ------------------p~s~~~~~Qr~GR~gR~g~~g~~~~ 378 (410)
T 2j0s_A 354 ------------------PNNRELYIHRIGRSGRYGRKGVAIN 378 (410)
T ss_dssp ------------------CSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred ------------------CCCHHHHHHhcccccCCCCceEEEE
Confidence 23445667999999997 5687765
No 24
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.26 E-value=2.4e-11 Score=115.23 Aligned_cols=160 Identities=19% Similarity=0.279 Sum_probs=108.3
Q ss_pred CeeeeccChH---HHHHhcCCCCeEEeCCCccceeeeeC----CCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHH
Q psy2956 1 MQIFATRRQH---LTRQYFDNAPLMNVPGRTHPVEIFYT----PEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEE 73 (251)
Q Consensus 1 ~~~sAT~~~~---~~~~yf~~~pvi~i~g~~~pV~~~y~----~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~e 73 (251)
+.||||++.. .+..+++....+.+........++|. +....+.+.... +........+.+|||.++..+
T Consensus 204 i~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~----~~l~~~~~~~~~IVf~~sr~~ 279 (591)
T 2v1x_A 204 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIV----KLINGRYKGQSGIIYCFSQKD 279 (591)
T ss_dssp EEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHH----HHHTTTTTTCEEEEECSSHHH
T ss_pred EEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHH----HHHHHhccCCCeEEEeCcHHH
Confidence 4689999964 44566665433333322111222331 111223333332 322222235789999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCc
Q psy2956 74 IEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGF 153 (251)
Q Consensus 74 i~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~ 153 (251)
++++.+.|... ++.+..+|+.|+.+++.+.+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 280 ~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g------~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 280 SEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSAN------EIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTT------SSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred HHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcC------CCeEEEEechhhcCCCcccccEEEEeCC
Confidence 99999998753 67899999999999988887665555 5679999999999999999999998543
Q ss_pred ccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccccc
Q psy2956 154 AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYI 197 (251)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~ 197 (251)
. -+..+-.||+||+||.+ +|.|+-+|
T Consensus 345 p------------------~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 345 S------------------KSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp C------------------SSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred C------------------CCHHHHHHHhccCCcCCCCceEEEEE
Confidence 1 24445679999999975 67786544
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.26 E-value=9.1e-12 Score=124.47 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHh--------------hhhcCCCCC----------------CeEEEEccCCCChhhHH
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKE--------------IDNLGPEAG----------------ELKCIPLYSTLPPNLQQ 110 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~--------------~~~l~~~~~----------------~l~vi~lsatl~~~~~~ 110 (251)
.+.+|||+++..+++++.+.|... ++......+ ...+.++|+.|+...+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 578999999999999988877431 000000000 12478899999999999
Q ss_pred HhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-
Q psy2956 111 RIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR- 189 (251)
Q Consensus 111 ~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~- 189 (251)
.++.....+ ..+++++|++++.++++|++.+|| .+..+ |+.. ...|++..+..||+|||||.+
T Consensus 416 ~v~~~F~~G------~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 416 LIEILFSKG------FIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp HHHHHHHTT------CCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETT------EEEECCHHHHHHHHGGGCCTTT
T ss_pred HHHHHHHCC------CCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCc------cCCCCCHHHHhHHhcccccCCC
Confidence 988777666 678999999999999999955555 44322 3322 345899999999999999975
Q ss_pred --CCcccccc
Q psy2956 190 --PGKCFRYI 197 (251)
Q Consensus 190 --~G~c~Rl~ 197 (251)
+|.|+.++
T Consensus 480 ~~~G~vi~l~ 489 (997)
T 4a4z_A 480 DSTGTVIVMA 489 (997)
T ss_dssp CSSEEEEEEC
T ss_pred CcceEEEEec
Confidence 78776543
No 26
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.25 E-value=5.1e-12 Score=121.37 Aligned_cols=116 Identities=26% Similarity=0.398 Sum_probs=86.3
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhh---HHHhcccCCCCCCCCCccceEEEecCccc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL---QQRIFEAAPANKPNGGIGRKVVVSTNIAE 137 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~---~~~~f~~~p~~~~~g~~~rkiivst~iae 137 (251)
+|++++ +.+.++++++++.|... ++.+.++|+.|+.++ +.+.|.. +.+ .++++++||+++
T Consensus 321 ~g~iIf-~~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~-~~g------~~~VLVATdi~e 383 (677)
T 3rc3_A 321 PGDCIV-CFSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFND-PND------PCKILVATDAIG 383 (677)
T ss_dssp TTEEEE-CSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHC-TTS------SCCEEEECGGGG
T ss_pred CCCEEE-EcCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHc-cCC------CeEEEEeCcHHH
Confidence 567655 55588899999988752 578999999999984 4455654 223 678999999999
Q ss_pred ceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC----CCccccccc
Q psy2956 138 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR----PGKCFRYIV 198 (251)
Q Consensus 138 tsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~----~G~c~Rl~~ 198 (251)
++++| ++.+||+.|..+. .|++..+. ...|++.++..||+|||||.+ +|.||+++.
T Consensus 384 ~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 384 MGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp SSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred CCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 99999 9999999999877 67765322 366999999999999999988 578887653
No 27
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.21 E-value=1.1e-11 Score=113.16 Aligned_cols=109 Identities=24% Similarity=0.265 Sum_probs=87.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.|.+|||+|+.++++++++.|... ++++..+|+.. +.+.+.....+ ..+++++|+++|.++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~~----r~~~~~~f~~g------~~~vLVaT~v~e~Gi 231 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRKT----FESEYPKCKSE------KWDFVITTDISEMGA 231 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTT----HHHHTTHHHHS------CCSEEEECGGGGTSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCcc----HHHHHHhhcCC------CCeEEEECchHHcCc
Confidence 678999999999999999988753 57789999873 33344433333 567999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
++| +..||++|......++ ..++-.....|.+.++..||+||+||.++
T Consensus 232 Dip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 232 NFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp CCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCC
Confidence 999 9999999998887777 33444556678888999999999999874
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.20 E-value=7.2e-11 Score=110.73 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=109.8
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCC-------ccceeeeeCC-CCchhHHHHHHHHHHHHhhccccCCCEEEecC
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGR-------THPVEIFYTP-EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLT 69 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~-------~~pV~~~y~~-~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLp 69 (251)
+.||||+.. +....++++...+.+... ...+...+.. ....+.+......+..........+.+|||++
T Consensus 268 l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 347 (563)
T 3i5x_A 268 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 347 (563)
T ss_dssp EEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcC
Confidence 479999994 334455555444443211 1112222211 11223333334444333332234678999999
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEE
Q psy2956 70 GQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVI 149 (251)
Q Consensus 70 g~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVf 149 (251)
+..+++.+++.|..... .++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||
T Consensus 348 s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g------~~~vLvaT~~~~~GiDip~v~~VI 415 (563)
T 3i5x_A 348 TVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKD------ESGILVCTDVGARGMDFPNVHEVL 415 (563)
T ss_dssp CHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHC------SSEEEEECGGGTSSCCCTTCCEEE
T ss_pred cHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcC------CCCEEEEcchhhcCCCcccCCEEE
Confidence 99999999999886532 267899999999999988877655544 567999999999999999999999
Q ss_pred eCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 150 DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 150 d~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
..+. |.+...-.||+||+||.+ +|.|+-
T Consensus 416 ~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~ 444 (563)
T 3i5x_A 416 QIGV------------------PSELANYIHRIGRTARSGKEGSSVL 444 (563)
T ss_dssp EESC------------------CSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred EECC------------------CCchhhhhhhcCccccCCCCceEEE
Confidence 8542 224456679999999985 677743
No 29
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.18 E-value=1.3e-10 Score=92.12 Aligned_cols=129 Identities=16% Similarity=0.300 Sum_probs=98.4
Q ss_pred cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhh
Q psy2956 29 HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL 108 (251)
Q Consensus 29 ~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~ 108 (251)
-.++.+|...+..+.+....+.+.. . ..+.+|||.++.++++.+.+.|... ++.+..+|+.++..+
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~-~----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMT-E----NPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQED 73 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHH-H----CCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHH
T ss_pred ccceEEEEECChHHHHHHHHHHHHh-c----CCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHH
Confidence 4467777766666666655543322 1 2568999999999999999988753 577899999999998
Q ss_pred HHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCC
Q psy2956 109 QQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 188 (251)
Q Consensus 109 ~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~ 188 (251)
+...+.....+ ..+++++|++++.++++|++.+||+.+. |.+...-.||.||+||.
T Consensus 74 r~~~~~~f~~g------~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 74 RFDVMNEFKRG------EYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRA 129 (163)
T ss_dssp HHHHHHHHHTT------SCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCT
T ss_pred HHHHHHHHHcC------CCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcC
Confidence 88877665544 4579999999999999999999998532 34555668999999998
Q ss_pred C-CCcccc
Q psy2956 189 R-PGKCFR 195 (251)
Q Consensus 189 ~-~G~c~R 195 (251)
+ +|.|+-
T Consensus 130 g~~g~~~~ 137 (163)
T 2hjv_A 130 GNKGKAIS 137 (163)
T ss_dssp TCCEEEEE
T ss_pred CCCceEEE
Confidence 4 677754
No 30
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.17 E-value=4.6e-11 Score=94.78 Aligned_cols=127 Identities=20% Similarity=0.404 Sum_probs=90.8
Q ss_pred eeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhH
Q psy2956 31 VEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQ 109 (251)
Q Consensus 31 V~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~ 109 (251)
|+.+|...+..+ .++...+. ++.+ ..+.+|||.++.++++.+++.|... ++.+..+|+.++..++
T Consensus 4 i~~~~~~~~~~~~K~~~l~~l-l~~~----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r 69 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDL-YDSI----SVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQER 69 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHH-HHHT----TCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred cEEEEEECCcchhHHHHHHHH-HHhC----CCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHH
Confidence 455565444444 44443332 2222 2578999999999999999988752 5778999999999998
Q ss_pred HHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 110 QRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 110 ~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
...+.....+ ..+++++|+.++.++++|++.+||+.+. |.+...-.||.||+||.+
T Consensus 70 ~~~~~~f~~g------~~~vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g 125 (165)
T 1fuk_A 70 DTIMKEFRSG------SSRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFG 125 (165)
T ss_dssp HHHHHHHHTT------SCSEEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC---
T ss_pred HHHHHHHHcC------CCEEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCC
Confidence 8887665554 5679999999999999999999998543 234445569999999974
Q ss_pred -CCcccc
Q psy2956 190 -PGKCFR 195 (251)
Q Consensus 190 -~G~c~R 195 (251)
+|.|+.
T Consensus 126 ~~g~~~~ 132 (165)
T 1fuk_A 126 RKGVAIN 132 (165)
T ss_dssp --CEEEE
T ss_pred CCceEEE
Confidence 688754
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=1.1e-10 Score=110.26 Aligned_cols=165 Identities=14% Similarity=0.193 Sum_probs=109.6
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCC-------ccceeeeeCCC-CchhHHHHHHHHHHHHhhccccCCCEEEecC
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGR-------THPVEIFYTPE-PERDYLEAAIRTVVQIHMCEEVEGDVLLFLT 69 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~-------~~pV~~~y~~~-~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLp 69 (251)
+.||||+.. +.+..++.+...+.+... ...+...+... ...+.....+..+..........+.+|||++
T Consensus 217 l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 296 (579)
T 3sqw_A 217 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 296 (579)
T ss_dssp EEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECC
Confidence 479999994 344466665544444321 12222222111 1122233333333333222234678999999
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEE
Q psy2956 70 GQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVI 149 (251)
Q Consensus 70 g~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVf 149 (251)
+..+++.+++.|...+. .++.+..+|+.++.+++.+.+.....+ ..+++++|++++.++++|++.+||
T Consensus 297 t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g------~~~vLVaT~~~~~GiDip~v~~VI 364 (579)
T 3sqw_A 297 TVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKD------ESGILVCTDVGARGMDFPNVHEVL 364 (579)
T ss_dssp SHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHC------SSEEEEECGGGTSSCCCTTCCEEE
T ss_pred cHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcC------CCeEEEEcchhhcCCCcccCCEEE
Confidence 99999999999886542 267899999999999888776654444 567999999999999999999999
Q ss_pred eCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 150 DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 150 d~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
..+. |.+...-.||+||+||.+ +|.|+-
T Consensus 365 ~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~ 393 (579)
T 3sqw_A 365 QIGV------------------PSELANYIHRIGRTARSGKEGSSVL 393 (579)
T ss_dssp EESC------------------CSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred EcCC------------------CCCHHHhhhhccccccCCCCceEEE
Confidence 8542 234556679999999976 577643
No 32
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.15 E-value=8.1e-12 Score=111.19 Aligned_cols=159 Identities=19% Similarity=0.391 Sum_probs=17.4
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCcc---ceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRTH---PVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~~---pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+.||||+.. +.+..|+.++..+.+..... .+..+|......++....+..+++. ...+.+|||+++.+++
T Consensus 197 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lVf~~~~~~~ 272 (394)
T 1fuu_A 197 VLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDS----ISVTQAVIFCNTRRKV 272 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------------------
T ss_pred EEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhc----CCCCcEEEEECCHHHH
Confidence 468999985 44557777665555554332 2233333322222221222222211 1256799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 273 ~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~------~~~vlv~T~~~~~Gldi~~~~~Vi~~~~- 336 (394)
T 1fuu_A 273 EELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSG------SSRILISTDLLARGIDVQQVSLVINYDL- 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCC------CCcEEEECChhhcCCCcccCCEEEEeCC-
Confidence 9988887642 67789999999999888887766555 5679999999999999999999998542
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCC-CCCccccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRY 196 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~-~~G~c~Rl 196 (251)
|.+...-.||.||+||. ++|.|+.+
T Consensus 337 -----------------p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 337 -----------------PANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp -------------------------------------------
T ss_pred -----------------CCCHHHHHHHcCcccCCCCCceEEEE
Confidence 33455567999999997 47888653
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.15 E-value=1.4e-10 Score=108.42 Aligned_cols=157 Identities=20% Similarity=0.336 Sum_probs=109.1
Q ss_pred CeeeeccChHHHH---HhcC-CCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTR---QYFD-NAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~---~yf~-~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
+.+|||.+..... ++++ +.|.+.+.+...| .++|.-....+.+....+.+.. + ..+.+|||.++.+++++
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~l~~~l~~-~----~~~~~IVf~~sr~~~e~ 251 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLDQLMRYVQE-Q----RGKSGIIYCNSRAKVED 251 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHHHHHHHHHH-T----TTCCEEEECSSHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHHHHHHHHHh-c----CCCcEEEEeCCHHHHHH
Confidence 4689999965443 4443 4566666654433 2223211122333333322211 1 35689999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccc
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQ 156 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~ 156 (251)
+++.|... ++.+...|+.++.+++.+.+.....+ ..+++++|+.++.++++|++.+||..+.
T Consensus 252 l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g------~~~vlVaT~a~~~GiD~p~v~~VI~~~~--- 313 (523)
T 1oyw_A 252 TAARLQSK---------GISAAAYHAGLENNVRADVQEKFQRD------DLQIVVATVAFGMGINKPNVRFVVHFDI--- 313 (523)
T ss_dssp HHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTT------SCSEEEECTTSCTTTCCTTCCEEEESSC---
T ss_pred HHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcC------CCeEEEEechhhCCCCccCccEEEEECC---
Confidence 99998753 57799999999999888877665544 5679999999999999999999998543
Q ss_pred eeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 157 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 157 ~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
|-+..+-.||+||+||.+ +|.|+-+
T Consensus 314 ---------------p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 314 ---------------PRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp ---------------CSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred ---------------CCCHHHHHHHhccccCCCCCceEEEE
Confidence 234556679999999976 6777543
No 34
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.12 E-value=1e-10 Score=95.38 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=92.8
Q ss_pred HHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcC
Q psy2956 13 RQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLG 89 (251)
Q Consensus 13 ~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~ 89 (251)
..|+.++-.|.+.... -.|+.+|...+..+.+..+.+.+ .. ..+.+|||.++..+++.+++.|...
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l----~~--~~~~~lVF~~~~~~~~~l~~~L~~~----- 77 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECL----QK--TPPPVLIFAEKKADVDAIHEYLLLK----- 77 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHH----TT--SCSCEEEECSCHHHHHHHHHHHHHH-----
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHH----Hh--CCCCEEEEECCHHHHHHHHHHHHHc-----
Confidence 3577776677775432 34566665555555555444322 11 2467999999999999999988753
Q ss_pred CCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccce
Q psy2956 90 PEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLL 169 (251)
Q Consensus 90 ~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~ 169 (251)
++.+..+|+.++.+++.+.+.....+ ..+++++|++++.++++|++.+||+.+ +
T Consensus 78 ----g~~~~~lhg~~~~~~R~~~l~~F~~g------~~~vLvaT~~~~~Gldi~~v~~VI~~d--------~-------- 131 (191)
T 2p6n_A 78 ----GVEAVAIHGGKDQEERTKAIEAFREG------KKDVLVATDVASKGLDFPAIQHVINYD--------M-------- 131 (191)
T ss_dssp ----TCCEEEECTTSCHHHHHHHHHHHHHT------SCSEEEECHHHHTTCCCCCCSEEEESS--------C--------
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcC------CCEEEEEcCchhcCCCcccCCEEEEeC--------C--------
Confidence 57789999999999888776655444 456999999999999999999999843 2
Q ss_pred EEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 170 VSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 170 ~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|.+...-.||.||+||.+ +|.|+-
T Consensus 132 --p~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 132 --PEEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp --CSSHHHHHHHHTTSCC---CCEEEE
T ss_pred --CCCHHHHHHHhCccccCCCCcEEEE
Confidence 234445679999999975 677644
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.4e-10 Score=116.08 Aligned_cols=121 Identities=21% Similarity=0.145 Sum_probs=88.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhh------------------hhcCCCCC------------CeEEEEccCCCChhhHH
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEI------------------DNLGPEAG------------ELKCIPLYSTLPPNLQQ 110 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~------------------~~l~~~~~------------~l~vi~lsatl~~~~~~ 110 (251)
.+.+|||.++..+++.+.+.|...- ..+..... ...+...|+.|+...+.
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 4579999999999999888765310 00000000 11278899999999998
Q ss_pred HhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-
Q psy2956 111 RIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR- 189 (251)
Q Consensus 111 ~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~- 189 (251)
.++.....+ ..+++++|++++.++++|++.+||+. ...|+.. ...|++...-.||+|||||.+
T Consensus 423 ~ve~~F~~G------~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~------~~rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 423 VIEILFQEG------FLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQ------QFRWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp HHHHHHHTT------CCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSS------CEEECCHHHHHHHHTTBCCTTT
T ss_pred HHHHHHhcC------CCcEEEEehHhhccCCCCCceEEEeC----CcccCCc------CCccCCHHHHhHhhhhcccCCC
Confidence 887665555 67899999999999999999999984 2234432 146888899999999999987
Q ss_pred --CCcccccc
Q psy2956 190 --PGKCFRYI 197 (251)
Q Consensus 190 --~G~c~Rl~ 197 (251)
+|.|+.++
T Consensus 487 d~~G~vi~l~ 496 (1010)
T 2xgj_A 487 DDRGIVIMMI 496 (1010)
T ss_dssp CSSEEEEEEE
T ss_pred CCceEEEEEE
Confidence 48776543
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.10 E-value=1.4e-11 Score=113.36 Aligned_cols=164 Identities=15% Similarity=0.228 Sum_probs=17.9
Q ss_pred CeeeeccChHH---HHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQHL---TRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~~~---~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
++||||+..+. ...++.++..+.+.... ..+..+|......+.. ...+..+.... ..+.+|||+++..++
T Consensus 271 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~-~~~~~lvF~~s~~~~ 346 (479)
T 3fmp_B 271 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK---FQALCNLYGAI-TIAQAMIFCHTRKTA 346 (479)
T ss_dssp EEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH---HHHHHHHHhhc-cCCceEEEeCcHHHH
Confidence 47999999653 34677777677776543 2233333332222111 11222222211 256799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+++.|... ...+..+|+.++...+...+.....+ ..+++++|++++.++++|++.+||+.+.-
T Consensus 347 ~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g------~~~iLv~T~~~~~GlDip~v~~VI~~d~p 411 (479)
T 3fmp_B 347 SWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREG------KEKVLVTTNVCARGIDVEQVSVVINFDLP 411 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcC------CCcEEEEccccccCCccccCCEEEEecCC
Confidence 9888887642 57789999999999999888777666 67799999999999999999999985432
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
.... .+.+...-.||+||+||.+ +|.|+.
T Consensus 412 ~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 412 VDKD------------GNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ------------------------------------------
T ss_pred CCCc------------cCCCHHHHHHHhcccccCCCCceEEE
Confidence 1110 0122334569999999965 588755
No 37
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=2.8e-10 Score=91.11 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=91.5
Q ss_pred ceeeeeCCCCchh-HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhh
Q psy2956 30 PVEIFYTPEPERD-YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL 108 (251)
Q Consensus 30 pV~~~y~~~~~~~-~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~ 108 (251)
.++.+|...+..+ .+..... +.... ..+.+|||.++...++.+.+.|... ++.+..+|+.++..+
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~----ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCN----IYGSI-TIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQ 72 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHH----HHTTS-CCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHH
T ss_pred CceEEEEEcCChHhHHHHHHH----HHHhC-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHH
Confidence 4666776655443 4443332 22221 3578999999999999999888742 677999999999999
Q ss_pred HHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCC
Q psy2956 109 QQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 188 (251)
Q Consensus 109 ~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~ 188 (251)
+...+.....+ ..+++++|++++.++++|++.+||+.+... ++. ...+...-.||+||+||.
T Consensus 73 R~~~~~~f~~g------~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~----~~~--------~~~~~~~~~qr~GR~gR~ 134 (175)
T 2rb4_A 73 RASIIQRFRDG------KEKVLITTNVCARGIDVKQVTIVVNFDLPV----KQG--------EEPDYETYLHRIGRTGRF 134 (175)
T ss_dssp HHHHHHHHHTT------SCSEEEECCSCCTTTCCTTEEEEEESSCCC------C--------CSCCHHHHHHHHCBC---
T ss_pred HHHHHHHHHcC------CCeEEEEecchhcCCCcccCCEEEEeCCCC----Ccc--------ccCCHHHHHHHhcccccC
Confidence 88877655544 567999999999999999999999854210 000 013444567999999997
Q ss_pred C-CCcccc
Q psy2956 189 R-PGKCFR 195 (251)
Q Consensus 189 ~-~G~c~R 195 (251)
+ +|.|+.
T Consensus 135 g~~g~~~~ 142 (175)
T 2rb4_A 135 GKKGLAFN 142 (175)
T ss_dssp -CCEEEEE
T ss_pred CCCceEEE
Confidence 4 677754
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.07 E-value=1.6e-10 Score=100.57 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=104.1
Q ss_pred eeeeccChH---HHHHhcCCCCeEEeCCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHH
Q psy2956 2 QIFATRRQH---LTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEAC 78 (251)
Q Consensus 2 ~~sAT~~~~---~~~~yf~~~pvi~i~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~ 78 (251)
.||||+..+ .+..|+++...+........++..|........ ... +... ....+.+|||.++.++++++.
T Consensus 165 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~-~~~~~~~lvf~~~~~~~~~l~ 237 (337)
T 2z0m_A 165 LFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR--SKV----QALR-ENKDKGVIVFVRTRNRVAKLV 237 (337)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH--HHH----HHHH-TCCCSSEEEECSCHHHHHHHH
T ss_pred EEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH--HHH----HHHH-hCCCCcEEEEEcCHHHHHHHH
Confidence 589999854 567888777666554444455544443222211 111 1111 123678999999999988876
Q ss_pred HHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCccccee
Q psy2956 79 KRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV 158 (251)
Q Consensus 79 ~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~ 158 (251)
+.|. ++..+|+.++.+++.+.+.....+ ..+++++|++++.++++|++.+||+.+.
T Consensus 238 ~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~------~~~vlv~T~~~~~Gid~~~~~~Vi~~~~----- 293 (337)
T 2z0m_A 238 RLFD-------------NAIELRGDLPQSVRNRNIDAFREG------EYDMLITTDVASRGLDIPLVEKVINFDA----- 293 (337)
T ss_dssp TTCT-------------TEEEECTTSCHHHHHHHHHHHHTT------SCSEEEECHHHHTTCCCCCBSEEEESSC-----
T ss_pred HHhh-------------hhhhhcCCCCHHHHHHHHHHHHcC------CCcEEEEcCccccCCCccCCCEEEEecC-----
Confidence 6543 367899999999988887665554 5679999999999999999999998532
Q ss_pred eCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 159 YNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 159 ~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
|.+...-.||+||+||.+ +|.|+-
T Consensus 294 -------------~~s~~~~~Q~~GR~gR~g~~g~~~~ 318 (337)
T 2z0m_A 294 -------------PQDLRTYIHRIGRTGRMGRKGEAIT 318 (337)
T ss_dssp -------------CSSHHHHHHHHTTBCGGGCCEEEEE
T ss_pred -------------CCCHHHhhHhcCccccCCCCceEEE
Confidence 234456689999999974 677754
No 39
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=92.45 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=82.9
Q ss_pred cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhh
Q psy2956 29 HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL 108 (251)
Q Consensus 29 ~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~ 108 (251)
-.++.+|...+..+.+..+.+.+... ...+.+|||.++...++.+.+.|... ++.+..+|+.++..+
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~~ll~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLLDLLNAT----GKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRD 84 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHHC-----CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC-------
T ss_pred CCceEEEEEeCcHHHHHHHHHHHHhc----CCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHH
Confidence 34666666555566666555443321 13577999999999999999888752 578999999999888
Q ss_pred HHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCC
Q psy2956 109 QQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 188 (251)
Q Consensus 109 ~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~ 188 (251)
+...+.....+ ..+++++|++++.++++|++.+||+.+ + |.+...-.||.||+||.
T Consensus 85 r~~~~~~f~~g------~~~vLvaT~~~~~Gldi~~~~~VI~~d--------~----------p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 85 REEALHQFRSG------KSPILVATAVAARGLDISNVKHVINFD--------L----------PSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp -CHHHHHHHHT------SSSEEEEEC------CCCSBSEEEESS--------C----------CSSHHHHHHHHTTBCCT
T ss_pred HHHHHHHHHcC------CCeEEEEcChhhcCCCcccCCEEEEeC--------C----------CCCHHHHHHHccccCCC
Confidence 77776554444 456999999999999999999999842 2 23455667999999997
Q ss_pred C-CCccccc
Q psy2956 189 R-PGKCFRY 196 (251)
Q Consensus 189 ~-~G~c~Rl 196 (251)
+ +|.|+.+
T Consensus 141 g~~g~~~~~ 149 (185)
T 2jgn_A 141 GNLGLATSF 149 (185)
T ss_dssp TSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 5 6777543
No 40
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.04 E-value=6.7e-10 Score=88.83 Aligned_cols=129 Identities=15% Similarity=0.245 Sum_probs=96.4
Q ss_pred cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhh
Q psy2956 29 HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL 108 (251)
Q Consensus 29 ~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~ 108 (251)
..++.+|...+..+.+....+.+.. + ..+.+|||.+...+++.+.+.|... ++.+..+|+.++..+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~-~----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDV-L----EFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEE 69 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHH-S----CCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHH
T ss_pred CCeEEEEEECChHHHHHHHHHHHHh-C----CCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHH
Confidence 3466777766666666655443322 1 2567999999999999999988753 577899999999998
Q ss_pred HHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCC
Q psy2956 109 QQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 188 (251)
Q Consensus 109 ~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~ 188 (251)
+...+.....+ ..+++++|++++.++++|++.+||+.+ + |.+...-.||.||+||.
T Consensus 70 r~~~~~~f~~g------~~~vLvaT~~~~~Gldi~~~~~Vi~~d--------~----------p~~~~~~~qr~GR~~R~ 125 (172)
T 1t5i_A 70 RLSRYQQFKDF------QRRILVATNLFGRGMDIERVNIAFNYD--------M----------PEDSDTYLHRVARAGRF 125 (172)
T ss_dssp HHHHHHHHHTT------SCSEEEESSCCSTTCCGGGCSEEEESS--------C----------CSSHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHCC------CCcEEEECCchhcCcchhhCCEEEEEC--------C----------CCCHHHHHHHhcccccC
Confidence 88877665544 557999999999999999999999843 2 23455667999999997
Q ss_pred C-CCcccc
Q psy2956 189 R-PGKCFR 195 (251)
Q Consensus 189 ~-~G~c~R 195 (251)
+ +|.|+-
T Consensus 126 g~~g~~~~ 133 (172)
T 1t5i_A 126 GTKGLAIT 133 (172)
T ss_dssp GCCCEEEE
T ss_pred CCCcEEEE
Confidence 5 577643
No 41
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.02 E-value=6.3e-11 Score=110.30 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=90.6
Q ss_pred CeeeeccCh---HHHHHhcCCCCeEEeCCCcccee---eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 1 MQIFATRRQ---HLTRQYFDNAPLMNVPGRTHPVE---IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 1 ~~~sAT~~~---~~~~~yf~~~pvi~i~g~~~pV~---~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
+.||||+.. +....|+++...+.+....++.. ..+......+.. ...+..+... ...+.+|||+++.+++
T Consensus 295 i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~ll~~-~~~~~~LVF~~s~~~a 370 (508)
T 3fho_A 295 VLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHK---YNVLVELYGL-LTIGQSIIFCKKKDTA 370 (508)
T ss_dssp EEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHH---HHHHHHHHC----CCCEEEBCSSTTTT
T ss_pred EEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHH---HHHHHHHHHh-cCCCcEEEEECCHHHH
Confidence 479999983 33446666666676666554432 233222221111 1122222222 1367899999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 154 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~ 154 (251)
+.+.+.|.. .+..+..+|+.++.+++...+.....+ ..+++++|++++.++++|++.+||+.+..
T Consensus 371 ~~l~~~L~~---------~~~~v~~~hg~~~~~~R~~il~~f~~g------~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 371 EEIARRMTA---------DGHTVACLTGNLEGAQRDAIMDSFRVG------TSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp THHHHHHTT---------TTCCCCEEC-----CTTGGGTHHHHSS------SCCCCEECC-----CCCTTCCEEEC----
T ss_pred HHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHHCC------CCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 998887754 256788899999988888777665555 56799999999999999999999975421
Q ss_pred cceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 155 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 155 ~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
.. .....+...-.||+||+||.+ +|.|+-
T Consensus 436 ~~------------~~~~~s~~~~~Qr~GRagR~g~~g~~i~ 465 (508)
T 3fho_A 436 LD------------QAGRPDPQTYLHRIGRTGRFGRVGVSIN 465 (508)
T ss_dssp CC-----------------CTHHHHHTTSCCC-----CEEEE
T ss_pred Cc------------ccCCCCHHHHHHHhhhcCCCCCCcEEEE
Confidence 10 001123445679999999976 677754
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.95 E-value=9.4e-10 Score=105.57 Aligned_cols=109 Identities=25% Similarity=0.319 Sum_probs=57.4
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEc--------cCCCChhhHHHhcccCCC-CCCCCCccceEE
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPL--------YSTLPPNLQQRIFEAAPA-NKPNGGIGRKVV 130 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~l--------satl~~~~~~~~f~~~p~-~~~~g~~~rkii 130 (251)
..+.+|||+++.++++.+.+.|... ...+.+++..+ |+.|+.+++.+.+..... + ..+++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g------~~~vL 465 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGN-----PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG------DHNIL 465 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHC-----TTCCSCCEEC-----------------------------------CCSCS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC------CccEE
Confidence 3678999999999999999988753 11123667777 669999999999888775 5 56799
Q ss_pred EecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccc
Q psy2956 131 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198 (251)
Q Consensus 131 vst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~ 198 (251)
++|++++.+++||++.+||+ |++... ..+..||+|| ||..+|.|+.++.
T Consensus 466 VaT~v~~~GiDip~v~~VI~--------~d~p~s----------~~~~~Qr~GR-GR~~~g~~~~l~~ 514 (696)
T 2ykg_A 466 IATSVADEGIDIAQCNLVIL--------YEYVGN----------VIKMIQTRGR-GRARGSKCFLLTS 514 (696)
T ss_dssp EEEESSCCC---CCCSEEEE--------ESCC------------CCCC----------CCCEEEEEES
T ss_pred EEechhhcCCcCccCCEEEE--------eCCCCC----------HHHHHHhhcc-CcCCCceEEEEec
Confidence 99999999999999999998 444322 2233599999 9999999987654
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.90 E-value=3.9e-09 Score=107.00 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=108.9
Q ss_pred CeeeeccChHHHHHhcCCCC---eEEeC-CCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTRQYFDNAP---LMNVP-GRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~~yf~~~p---vi~i~-g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
+.||||.....+...+.+.. ++..+ ....++..++.+.......+.. ..... ..|.++||.+..+++++
T Consensus 755 l~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~i----l~~l~---~g~qvlvf~~~v~~~~~ 827 (1151)
T 2eyq_A 755 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI----LREIL---RGGQVYYLYNDVENIQK 827 (1151)
T ss_dssp EEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHH----HHHHT---TTCEEEEECCCSSCHHH
T ss_pred EEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHH----HHHHh---cCCeEEEEECCHHHHHH
Confidence 46999988777665554433 22222 2346777666544332222222 22221 26789999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCCcccc
Q psy2956 77 ACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQ 156 (251)
Q Consensus 77 ~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G~~~~ 156 (251)
+++.|...+ ++.++..+|+.++.+++.+.+.....+ ..+++++|++++.+++||++.+||.-+..
T Consensus 828 l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g------~~~VLVaT~v~e~GiDip~v~~VIi~~~~-- 892 (1151)
T 2eyq_A 828 AAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQ------RFNVLVCTTIIETGIDIPTANTIIIERAD-- 892 (1151)
T ss_dssp HHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTT------SCCEEEESSTTGGGSCCTTEEEEEETTTT--
T ss_pred HHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcC------CCcEEEECCcceeeecccCCcEEEEeCCC--
Confidence 999887642 467899999999999988887665554 56799999999999999999988852110
Q ss_pred eeeCCccccccceEEEcccchHHHHhcccCCCC-CCccccc
Q psy2956 157 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRY 196 (251)
Q Consensus 157 ~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl 196 (251)
.. +.++-.||.||+||.+ +|.||-+
T Consensus 893 -----~~----------~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 893 -----HF----------GLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp -----SS----------CHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred -----CC----------CHHHHHHHHhccCcCCCceEEEEE
Confidence 00 1134569999999965 6888653
No 44
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.88 E-value=1.3e-08 Score=97.63 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||.++....+.+.+.|.+. ++++..+|+.++..++...+.....+ ..+++++||+++.++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g------~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLG------HYDCLVGINLLREGL 503 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTT------SCSEEEESCCCCTTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcC------CceEEEccChhhcCc
Confidence 567999999999999999988753 56788899999999998886655544 456999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 195 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~R 195 (251)
++|++.+||..+.+... .|-+..+-.||+||+||..+|+|+-
T Consensus 504 Dip~v~lVI~~d~d~~G-------------~p~s~~~~iQr~GRagR~~~G~~i~ 545 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEG-------------FLRSERSLIQTIGRAARNARGEVWL 545 (664)
T ss_dssp CCTTEEEEEETTTTSCS-------------GGGSHHHHHHHHGGGTTSTTCEEEE
T ss_pred cCCCCCEEEEeCCcccC-------------CCCCHHHHHHHHCccCcCCCCEEEE
Confidence 99999999997643211 1335556789999999999998854
No 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.88 E-value=1e-08 Score=98.39 Aligned_cols=107 Identities=22% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||.++....+.+.+.|.+. ++++..+|+.++..++.+.+.....+ ..+++++||+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g------~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLG------KYDVLVGINLLREGL 509 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHT------SCSEEEESCCCSTTC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcC------CeEEEEecchhhCCc
Confidence 567999999999999999888753 57788899999999988886554444 456999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 195 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~R 195 (251)
++|++.+||..+.+.. + .|-+..+-.||+||+||..+|+|+-
T Consensus 510 Dip~v~lVi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~ 551 (661)
T 2d7d_A 510 DIPEVSLVAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIM 551 (661)
T ss_dssp CCTTEEEEEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEE
T ss_pred ccCCCCEEEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEE
Confidence 9999999999765321 1 1334556789999999999999854
No 46
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.35 E-value=3.1e-10 Score=90.42 Aligned_cols=102 Identities=18% Similarity=0.301 Sum_probs=82.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||.++..+++.+.+.|... ++.+..+|+.++.+++...+.....+ ..+++++|++++.++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g------~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEG------RVNVLVATDVAARGI 94 (170)
Confidence 567999999999999988887642 67788999999999888887766655 567999999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFR 195 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~R 195 (251)
++|++.+||+.+. |.+...-.||.||+||.+ +|.|+-
T Consensus 95 d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 95 DIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999998432 234445569999999975 677754
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.80 E-value=8.6e-09 Score=93.13 Aligned_cols=105 Identities=22% Similarity=0.315 Sum_probs=81.3
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccC--------CCChhhHHHhcccCCCCCCCCCccceEEE
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYS--------TLPPNLQQRIFEAAPANKPNGGIGRKVVV 131 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsa--------tl~~~~~~~~f~~~p~~~~~g~~~rkiiv 131 (251)
..+.+|||.++.+.++.+.+.|... ++.+..+|+ .++.++++..+.....+ ..++++
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~------~~~vLv 424 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARG------EFNVLV 424 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHT------SCSEEE
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcC------CceEEE
Confidence 3678999999999999999888753 567888998 88888887776554444 456999
Q ss_pred ecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccccc
Q psy2956 132 STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197 (251)
Q Consensus 132 st~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~ 197 (251)
+|++++.++++|++.+||..+. |.+.....||.||+||.++|+||++.
T Consensus 425 ~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr~GR~~R~g~g~~~~l~ 472 (494)
T 1wp9_A 425 ATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQRRGRTGRHMPGRVIILM 472 (494)
T ss_dssp ECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHHHTTSCSCCCSEEEEEE
T ss_pred ECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHHHhhccCCCCceEEEEE
Confidence 9999999999999999997432 12444568999999999999988743
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.78 E-value=4.1e-09 Score=102.74 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=102.7
Q ss_pred CeeeeccChHHHH-HhcCCCCeEEe---CCCccceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHH
Q psy2956 1 MQIFATRRQHLTR-QYFDNAPLMNV---PGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEE 76 (251)
Q Consensus 1 ~~~sAT~~~~~~~-~yf~~~pvi~i---~g~~~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~ 76 (251)
+.||||.....+. .+|++..+..+ +....|+..++.+....+.+ ...+.+.. ...+.++||+|..++.+.
T Consensus 520 L~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l---~~~i~~~l---~~g~qvlVf~~~ie~se~ 593 (780)
T 1gm5_A 520 LVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEV---YEFVRQEV---MRGGQAFIVYPLIEESDK 593 (780)
T ss_dssp EEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHH---HHHHHHHT---TTSCCBCCBCCCC-----
T ss_pred EEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHH---HHHHHHHH---hcCCcEEEEecchhhhhh
Confidence 4799998766665 55665444333 33346888777665433322 22222221 125679999997665432
Q ss_pred H----HHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecceEEEEeCC
Q psy2956 77 A----CKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPG 152 (251)
Q Consensus 77 ~----~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g~~lVfd~G 152 (251)
+ .+.+.+.++.. ..+++++..+|+.|+.+++.+.+.....+ ..+++++|++++.++++|++.+||.-+
T Consensus 594 l~~~~a~~l~~~L~~~--~~~~~~v~~lHG~m~~~eR~~v~~~F~~G------~~~ILVaT~vie~GIDiP~v~~VIi~d 665 (780)
T 1gm5_A 594 LNVKSAVEMYEYLSKE--VFPEFKLGLMHGRLSQEEKDRVMLEFAEG------RYDILVSTTVIEVGIDVPRANVMVIEN 665 (780)
T ss_dssp ---CHHHHHHHSGGGS--CC---CBCCCCSSSCCSCSHHHHHHHTTT------SSSBCCCSSCCCSCSCCTTCCEEEBCS
T ss_pred hhHHHHHHHHHHHHhh--hcCCCcEEEEeCCCCHHHHHHHHHHHHCC------CCeEEEECCCCCccccCCCCCEEEEeC
Confidence 1 22222222220 22467899999999998888887776665 567999999999999999999998632
Q ss_pred cccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcccccc
Q psy2956 153 FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRYI 197 (251)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c~Rl~ 197 (251)
+.. .+.+.-.||+||+||.+ +|.|+-++
T Consensus 666 --------~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 666 --------PER---------FGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp --------CSS---------SCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred --------CCC---------CCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 211 12345569999999954 78887544
No 49
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.77 E-value=8.9e-09 Score=92.73 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=70.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEE-EccCCCChhhHHHhcccCCCCCCCCCccceEEEe----cCc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCI-PLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS----TNI 135 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi-~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivs----t~i 135 (251)
++.+|||+++..+++.+++.|... ++++. .+|+. ..+ +.....+ ..+++++ |++
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~--~r~----~~~f~~g------~~~vLvat~s~T~~ 310 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF--EKN----FEDFKVG------KINILIGVQAYYGK 310 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH--HHH----HHHHHTT------SCSEEEEECCTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc--chH----HHHHhCC------CCeEEEEecCcCch
Confidence 467999999999999999988753 56676 78874 111 3222233 4679999 999
Q ss_pred ccceeeecc-eEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-----CCccc
Q psy2956 136 AETSLTIDG-VVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-----PGKCF 194 (251)
Q Consensus 136 aetsltI~g-~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-----~G~c~ 194 (251)
++.++++|+ +.+||+.|..+ + .+...-.||+||+||.+ +|.|+
T Consensus 311 ~~~GiDip~~v~~VI~~~~p~--------~--------~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 311 LTRGVDLPERIKYVIFWGTPS--------G--------PDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp CCCCCCCTTTCCEEEEESCCT--------T--------TCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred hhccCccccccCEEEEECCCC--------C--------CCHHHHHHHhCccccCCCCCCcceEEE
Confidence 999999999 99999854321 0 33445579999999975 46554
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.76 E-value=4.8e-08 Score=102.28 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=115.3
Q ss_pred Ceeeecc-ChHHHHHhcCC--CCeEEeCCC--ccceeeeeCC---CCchhHHHHHHHHHHHHhhccccCCCEEEecCCHH
Q psy2956 1 MQIFATR-RQHLTRQYFDN--APLMNVPGR--THPVEIFYTP---EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72 (251)
Q Consensus 1 ~~~sAT~-~~~~~~~yf~~--~pvi~i~g~--~~pV~~~y~~---~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ 72 (251)
+.||||+ |++.|++|++. .++..+... .-|.+.+... ......+....+.+..........+.+|||+++..
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred EEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHH
Confidence 4699999 68999999974 345555543 3444444321 11122222222222222222234678999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCC-----------------C--------CeEEEEccCCCChhhHHHhcccCCCCCCCCCccc
Q psy2956 73 EIEEACKRIKKEIDNLGPEA-----------------G--------ELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGR 127 (251)
Q Consensus 73 ei~~~~~~L~~~~~~l~~~~-----------------~--------~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~r 127 (251)
+.+.+...|...+..-.... . ...+-..||.|+.+++..+......+ ..
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G------~i 1240 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSG------AI 1240 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHT------SB
T ss_pred HHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCC------CC
Confidence 99888777654332211100 0 12367789999999998886665555 67
Q ss_pred eEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC---CCccc
Q psy2956 128 KVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCF 194 (251)
Q Consensus 128 kiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~---~G~c~ 194 (251)
++++||+.++.++.+|...+||..- ..|+.. .....|++...-.|++|||||.+ .|.|+
T Consensus 1241 ~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~----~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~av 1302 (1724)
T 4f92_B 1241 QVVVASRSLCWGMNVAAHLVIIMDT----QYYNGK----IHAYVDYPIYDVLQMVGHANRPLQDDEGRCV 1302 (1724)
T ss_dssp CEEEEEGGGSSSCCCCBSEEEEECS----EEEETT----TTEEEECCHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred eEEEEChHHHcCCCCCccEEEEecC----ccccCc----ccccCCCCHHHHHHhhccccCCCCCCceEEE
Confidence 8999999999999999999998742 234332 23345777778889999999976 57664
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.69 E-value=6.4e-08 Score=101.36 Aligned_cols=175 Identities=18% Similarity=0.192 Sum_probs=113.5
Q ss_pred Ceeeecc-ChHHHHHhcCCCC---eEEeCC--CccceeeeeCCCCch---hHHHHHHHHHHHHhhccccCCCEEEecCCH
Q psy2956 1 MQIFATR-RQHLTRQYFDNAP---LMNVPG--RTHPVEIFYTPEPER---DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71 (251)
Q Consensus 1 ~~~sAT~-~~~~~~~yf~~~p---vi~i~g--~~~pV~~~y~~~~~~---~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~ 71 (251)
+.+|||+ |.+.+++|++..+ +..+.+ |.-|.+.+|...... .........+..........+.+|||.++.
T Consensus 248 I~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR 327 (1724)
T 4f92_B 248 IGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSR 327 (1724)
T ss_dssp EEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSST
T ss_pred EEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCH
Confidence 4689999 5888999997532 334444 334455555432221 122222222223222222357899999999
Q ss_pred HHHHHHHHHHHHhhhhcCC------C----------------CC------CeEEEEccCCCChhhHHHhcccCCCCCCCC
Q psy2956 72 EEIEEACKRIKKEIDNLGP------E----------------AG------ELKCIPLYSTLPPNLQQRIFEAAPANKPNG 123 (251)
Q Consensus 72 ~ei~~~~~~L~~~~~~l~~------~----------------~~------~l~vi~lsatl~~~~~~~~f~~~p~~~~~g 123 (251)
.+.+.+.+.|.+....... . .. ..-+-..||.|+.+++..+......+
T Consensus 328 ~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G---- 403 (1724)
T 4f92_B 328 KETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK---- 403 (1724)
T ss_dssp TTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC----
Confidence 9988888887654321100 0 00 11256779999999988876655555
Q ss_pred CccceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 124 GIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 124 ~~~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
..++++||+.++.++.+|...+||.. ...|++..+ ...|++.+.-.||+|||||.+
T Consensus 404 --~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~----~~~~ls~~~~~Qm~GRAGR~g 459 (1724)
T 4f92_B 404 --HIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKG----RWTELGALDILQMLGRAGRPQ 459 (1724)
T ss_dssp --CCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTT----EEEECCHHHHHHHHTTBSCTT
T ss_pred --CCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCC----CcccCCHHHHHHhhhhccCCC
Confidence 56899999999999999999988863 234655432 346888889999999999976
No 52
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.62 E-value=1.2e-07 Score=87.84 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCC---CCCCeEEEEccCCCChhhHHHhcccCCC-CCCCCCccceEEEecCcc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGP---EAGELKCIPLYSTLPPNLQQRIFEAAPA-NKPNGGIGRKVVVSTNIA 136 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~---~~~~l~vi~lsatl~~~~~~~~f~~~p~-~~~~g~~~rkiivst~ia 136 (251)
.+.+|||.+..+.++.+.+.|...-....- .........+|+.++.+++.+.+..... + ..+++++|+++
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g------~~~vLvaT~~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG------DNNILIATSVA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------------CCSEEEECCCT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC------CeeEEEEcchh
Confidence 678999999999999999998753110000 0001122344668999999988877765 4 55799999999
Q ss_pred cceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccccc
Q psy2956 137 ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197 (251)
Q Consensus 137 etsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~ 197 (251)
+.++++|++.+||. |++......+. ||+|| ||..+|.||.+.
T Consensus 463 ~~GlDlp~v~~VI~--------~d~p~s~~~~~----------Qr~GR-gR~~~g~~~~l~ 504 (555)
T 3tbk_A 463 DEGIDIAECNLVIL--------YEYVGNVIKMI----------QTRGR-GRARDSKCFLLT 504 (555)
T ss_dssp TCCEETTSCSEEEE--------ESCCSSCCCEE----------CSSCC-CTTTSCEEEEEE
T ss_pred hcCCccccCCEEEE--------eCCCCCHHHHH----------HhcCc-CcCCCceEEEEE
Confidence 99999999999998 44433333333 89999 999999997753
No 53
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.57 E-value=5.8e-08 Score=90.09 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=46.2
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCC---CCCeEEEEccCCCChhhHHHhcccCCC-CCCCCCccceEEEecCc
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPE---AGELKCIPLYSTLPPNLQQRIFEAAPA-NKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~---~~~l~vi~lsatl~~~~~~~~f~~~p~-~~~~g~~~rkiivst~i 135 (251)
..+.+|||.+..+.++.+.+.|......-.-+ ........+|+.++.+++.+.+..... + ..+++++|++
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g------~~~vLvaT~~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK------DNRLLIATSV 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------------CCEEEEEC-
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC------ceEEEEEcCc
Confidence 36789999999999999998886431000000 001223345778999999988877765 4 5679999999
Q ss_pred ccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccccc
Q psy2956 136 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197 (251)
Q Consensus 136 aetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~ 197 (251)
++.++++|++.+||. |++ |-+...-.||+|| ||..+|+||.+.
T Consensus 463 ~~~GiDip~v~~VI~--------~d~----------p~s~~~~~Qr~GR-gR~~~g~~~~l~ 505 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVT 505 (556)
T ss_dssp ----------CEEEE--------ETC----------CSCHHHHHHC---------CCEEEEE
T ss_pred hhcCCCchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCceEEEEE
Confidence 999999999999997 443 2344566799999 999999998753
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.57 E-value=6.3e-09 Score=100.47 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=41.5
Q ss_pred EEEcccc-hHHHH--hcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhh
Q psy2956 170 VSPISKA-SAQQR--AGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKAS 246 (251)
Q Consensus 170 ~~pis~~-~a~qR--~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~ 246 (251)
+.++|.. +..+| +... ...|+ +++++|||++|++|+||++.+|||+ .+.|||+++.. ..|+|+++
T Consensus 315 v~~~h~~l~~~~r~~v~~~--f~~g~---~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~ 382 (715)
T 2va8_A 315 VAYHHAGLSKALRDLIEEG--FRQRK---IKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIME 382 (715)
T ss_dssp EEEECTTSCHHHHHHHHHH--HHTTC---SCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHH
T ss_pred EEEECCCCCHHHHHHHHHH--HHcCC---CeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHH
Confidence 6677754 22333 2222 22354 4799999999999999999999997 67899887665 78999999
Q ss_pred HhhhC
Q psy2956 247 AQQRA 251 (251)
Q Consensus 247 a~qR~ 251 (251)
+.||+
T Consensus 383 ~~Qr~ 387 (715)
T 2va8_A 383 YKQMS 387 (715)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99984
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.55 E-value=3.3e-07 Score=87.83 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=100.9
Q ss_pred eeeeccC--hHHHHHhcCCCCeEEeCCCcccee-----eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 2 QIFATRR--QHLTRQYFDNAPLMNVPGRTHPVE-----IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 2 ~~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~-----~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
-|++|+. ++.|.+.| +..++.||...-... ..|. ...+...+.+..+...|.. ...+|||..+.+..
T Consensus 414 GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~~---gqpVLVFt~S~e~s 487 (822)
T 3jux_A 414 GMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYKK---GQPVLVGTTSIEKS 487 (822)
T ss_dssp EEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHHHH---TCCEEEEESSHHHH
T ss_pred EECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEe--cHHHHHHHHHHHHHHHhhC---CCCEEEEECCHHHH
Confidence 3788887 55666666 578999986421111 2332 3456667777766666532 34599999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec--------ceE
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID--------GVV 146 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~--------g~~ 146 (251)
+.+.+.|... ++..-.+|+.....+...+-..... + .+.+|||+|..+++|+ |..
T Consensus 488 E~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~-------g-~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 488 ELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQK-------G-MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp HHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHST-------T-CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred HHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCC-------C-eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 9988888742 6777889998544333222111111 2 4999999999999997 777
Q ss_pred EEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 147 FVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 147 lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
+||.+.+ |-+...-.||.||+||.+ ||.+
T Consensus 551 hVInte~------------------Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 551 CIIGTER------------------HESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp EEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEE
T ss_pred EEEecCC------------------CCCHHHHHHhhCccccCCCCeeE
Confidence 8888633 223334569999999976 6764
No 56
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.51 E-value=6.7e-07 Score=86.98 Aligned_cols=149 Identities=26% Similarity=0.299 Sum_probs=100.7
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCcccee------eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVE------IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~------~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|++|.. ++.|.+.| +..++.||.. .|+. ..|. ...+...+.++.+...|.. ...+|||..+.+..
T Consensus 373 mTGTa~te~~e~~~iY-~l~vv~IPtn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~~~---~~pvLVft~s~~~s 445 (844)
T 1tf5_A 373 MTGTAKTEEEEFRNIY-NMQVVTIPTN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRYMT---GQPVLVGTVAVETS 445 (844)
T ss_dssp EESCCGGGHHHHHHHH-CCCEEECCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHHHH---TCCEEEEESCHHHH
T ss_pred CCcccchhHHHHHHHh-CCceEEecCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHHhc---CCcEEEEECCHHHH
Confidence 456665 45555655 4678888753 3331 3333 3455666666666555532 34599999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeec--------ceE
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID--------GVV 146 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~--------g~~ 146 (251)
+.+.+.|... ++....+|+.+...+...+...... + .+.+|||+|.++++|+ |..
T Consensus 446 e~Ls~~L~~~---------gi~~~vLhg~~~~rEr~ii~~ag~~-------g-~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 446 ELISKLLKNK---------GIPHQVLNAKNHEREAQIIEEAGQK-------G-AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp HHHHHHHHTT---------TCCCEEECSSCHHHHHHHHTTTTST-------T-CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred HHHHHHHHHC---------CCCEEEeeCCccHHHHHHHHHcCCC-------C-eEEEeCCccccCcCccccchhhhcCCc
Confidence 9998888752 6778889999866655433322111 3 5899999999999998 889
Q ss_pred EEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC-CCcc
Q psy2956 147 FVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKC 193 (251)
Q Consensus 147 lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~-~G~c 193 (251)
+||.+.+ |-+...-.||.||+||.+ ||.+
T Consensus 509 ~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 509 AVVGTER------------------HESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EEEEecC------------------CCCHHHHHhhcCccccCCCCCeE
Confidence 9999643 223334569999999975 6764
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.51 E-value=6.4e-09 Score=95.62 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=66.0
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+-++||-++.................+..+|.. +|.-...+...|+ .++.+|||++|.+|+||+ .+|||+|+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~---~R~~~~~~f~~g~---~~iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK---SYDTEYPKCKNGD---WDFVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT---CCCCCGGGSSSCC---CSEEEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH---HHHHHHhhccCCC---ceEEEECChHHhCeecCC-CEEEECCc
Confidence 5778999988765432211111123445566653 2221111233454 478999999999999999 99999999
Q ss_pred ccceeeccCCCcceeee---eccchhhHhhhC
Q psy2956 223 AKQKVYNPRIRVESLLV---SPISKASAQQRA 251 (251)
Q Consensus 223 ~k~~~~~~~~~~~~l~~---~~is~~~a~qR~ 251 (251)
.+.+.|+ ..+.+.+.. .|.|+++..||+
T Consensus 263 ~~~~~~~-~~~~~~~~~~~d~p~s~~~~~QR~ 293 (459)
T 2z83_A 263 SVKPTIL-EEGEGRVILGNPSPITSASAAQRR 293 (459)
T ss_dssp ECCEEEE-CSSSCEEEECSCEECCHHHHHHHH
T ss_pred ccccccc-cccccccccccCCCCCHHHHHHhc
Confidence 9999987 456666655 999999999984
No 58
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.48 E-value=8.2e-08 Score=96.61 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=74.4
Q ss_pred CeeeeccChH--HHHHhcCCCCeEEeCCCc---cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHHH
Q psy2956 1 MQIFATRRQH--LTRQYFDNAPLMNVPGRT---HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIE 75 (251)
Q Consensus 1 ~~~sAT~~~~--~~~~yf~~~pvi~i~g~~---~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~ 75 (251)
++||||+... ....++++...+.+.+.. ..+..+|.+....+.+...+ . ...+.+|||+++..+++
T Consensus 219 ~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll-------~--~~~~~~LVF~~t~~~a~ 289 (1054)
T 1gku_B 219 CLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSIL-------E--KLGTGGIIYARTGEEAE 289 (1054)
T ss_dssp EEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTHHHH-------T--TSCSCEEEEESSHHHHH
T ss_pred EEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHHHHH-------h--hcCCCEEEEEcCHHHHH
Confidence 3689998753 112333333334444433 33555555433333322221 1 12567999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEe----cCcccceeeecc-eEEEEe
Q psy2956 76 EACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS----TNIAETSLTIDG-VVFVID 150 (251)
Q Consensus 76 ~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivs----t~iaetsltI~g-~~lVfd 150 (251)
++++.|.. . +++..+|+.+.. ..++ |.. + ..+++++ ||+++.++++|+ +.+||+
T Consensus 290 ~l~~~L~~--------~--~~v~~lhg~~~~-~l~~-F~~---G------~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 290 EIYESLKN--------K--FRIGIVTATKKG-DYEK-FVE---G------EIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp HHHHTTTT--------S--SCEEECTTSSSH-HHHH-HHH---T------SCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred HHHHHHhh--------c--cCeeEEeccHHH-HHHH-HHc---C------CCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 88776653 1 778999999853 3333 332 2 4579999 999999999999 499999
Q ss_pred CCcc
Q psy2956 151 PGFA 154 (251)
Q Consensus 151 ~G~~ 154 (251)
.|..
T Consensus 349 ~~~P 352 (1054)
T 1gku_B 349 VGCP 352 (1054)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 8887
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.42 E-value=1.9e-07 Score=85.59 Aligned_cols=141 Identities=21% Similarity=0.190 Sum_probs=90.7
Q ss_pred CCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcc--------cceeeecceEEEEeCCcccceeeCCccc
Q psy2956 93 GELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIA--------ETSLTIDGVVFVIDPGFAKQKVYNPRIR 164 (251)
Q Consensus 93 ~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ia--------etsltI~g~~lVfd~G~~~~~~~~~~~~ 164 (251)
++.+++.||||++.+.+..++...+. +.+...+. +....-.+-++||-++............
T Consensus 140 ~~~~~i~~SAT~~~~~~~~~~~~~~~----------~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~ 209 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPFPQSNSPI----------EDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLR 209 (451)
T ss_dssp TSCEEEEECSSCTTCCCSSCCCSSCE----------EEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCccchhhhcCCCce----------EecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHH
Confidence 57899999999987654433322211 11100110 0001125678999888754432111111
Q ss_pred cccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeee---ec
Q psy2956 165 VESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV---SP 241 (251)
Q Consensus 165 ~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~---~~ 241 (251)
.....+.++|.... ++....+ ..|+ .++.+|||++|.+|.||+ .+|||.|+.+...|| ..+++.+.. .|
T Consensus 210 ~~g~~~~~lh~~~~-~~~~~~f--~~g~---~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p 281 (451)
T 2jlq_A 210 KSGKRVIQLSRKTF-DTEYPKT--KLTD---WDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIP 281 (451)
T ss_dssp TTTCCEEEECTTTH-HHHGGGG--GSSC---CSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEE
T ss_pred HcCCeEEECCHHHH-HHHHHhh--ccCC---ceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeeccccc
Confidence 11344556776433 2333322 2444 368999999999999999 999999999999999 778888887 99
Q ss_pred cchhhHhhhC
Q psy2956 242 ISKASAQQRA 251 (251)
Q Consensus 242 is~~~a~qR~ 251 (251)
.|.++..||+
T Consensus 282 ~s~~~y~Qr~ 291 (451)
T 2jlq_A 282 VTPASAAQRR 291 (451)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHhc
Confidence 9999999984
No 60
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.42 E-value=3.2e-07 Score=89.67 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=51.5
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCC---CCCeEEEEccCCCChhhHHHhcccCCC-CCCCCCccceEEEecCc
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPE---AGELKCIPLYSTLPPNLQQRIFEAAPA-NKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~---~~~l~vi~lsatl~~~~~~~~f~~~p~-~~~~g~~~rkiivst~i 135 (251)
..+.+|||.+....++.+.+.|......-.-+ ........+|+.++.+++.+.+..... + ..+++++|++
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g------~~~vLVaT~~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK------DNRLLIATSV 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------------CCSEEEEECC
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC------CceEEEEcCc
Confidence 36789999999999999998887521000000 001223345778999999888877665 4 4569999999
Q ss_pred ccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccccc
Q psy2956 136 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197 (251)
Q Consensus 136 aetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~ 197 (251)
++.++++|++.+||. |++ |-+...-.||+|| ||..+|+||++.
T Consensus 704 ~~~GIDlp~v~~VI~--------yd~----------p~s~~~~iQr~GR-GR~~~g~~i~l~ 746 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVT 746 (797)
T ss_dssp -------CCCSEEEE--------ESC----------CSCHHHHHTC--------CCCEEEEE
T ss_pred hhcCCCchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCceEEEEE
Confidence 999999999999997 443 2344566799999 999999998753
No 61
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.42 E-value=2.5e-07 Score=93.39 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEE-EccCCCChhhHHHhcccCCCCCCCCCccceEEEe----cCc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCI-PLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS----TNI 135 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi-~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivs----t~i 135 (251)
++.+|||+++.++++++.+.|... ++++. .+|+. +++ +.....+ ..+++++ ||+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F~~G------~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVG------KINILIGVQAYYGK 367 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHHHHT------SCSEEEEETTTHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHHHCC------CCCEEEEecCCCCe
Confidence 478999999999999999988753 56777 88883 222 3333333 5679999 999
Q ss_pred ccceeeecc-eEEEEeCCccc
Q psy2956 136 AETSLTIDG-VVFVIDPGFAK 155 (251)
Q Consensus 136 aetsltI~g-~~lVfd~G~~~ 155 (251)
++.+++||+ +.+||+.|.-+
T Consensus 368 larGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCE
T ss_pred eEecCcCCCCCCEEEEECCCC
Confidence 999999999 99999988776
No 62
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.40 E-value=3.6e-07 Score=90.90 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=53.0
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCC---CCCeEEEEccCCCChhhHHHhcccCCC-CCCCCCccceEEEecCc
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPE---AGELKCIPLYSTLPPNLQQRIFEAAPA-NKPNGGIGRKVVVSTNI 135 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~---~~~l~vi~lsatl~~~~~~~~f~~~p~-~~~~g~~~rkiivst~i 135 (251)
..+.+|||.+....++.+.+.|......-.-+ ..+.....+|+.++..++.+.+..... + ..+++++|++
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g------~~~VLVaT~~ 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK------DNRLLIATSV 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------------CCSEEEEECC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC------CeeEEEEeCc
Confidence 36789999999999999999887531000000 001223345788999999988877665 4 4579999999
Q ss_pred ccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCcccccc
Q psy2956 136 AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197 (251)
Q Consensus 136 aetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~ 197 (251)
++.++++|++.+||. |++ |-+...-.||+|| ||..+|+||++.
T Consensus 704 ~~eGIDlp~v~~VI~--------yD~----------p~s~~~~iQr~GR-GR~~~g~vi~Li 746 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVT 746 (936)
T ss_dssp ------CCCCSEEEE--------ESC----------CSCSHHHHCC--------CCCEEEEE
T ss_pred hhcCCcchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCCEEEEEE
Confidence 999999999999997 443 3345566799999 999999998753
No 63
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.28 E-value=5.5e-07 Score=86.30 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=76.2
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCC--------CChhhHHHhcccCCCCCCCCCccceEEEe
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYST--------LPPNLQQRIFEAAPANKPNGGIGRKVVVS 132 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsat--------l~~~~~~~~f~~~p~~~~~g~~~rkiivs 132 (251)
.+.+|||.++...++.+.+.|.... .+ ...++++..+|+. |+.+++.+.+.....+ ..+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~-~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g------~~~VLVa 470 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE-KF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG------KINLLIA 470 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC-SC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---------CCSEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc-cc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC------CCcEEEE
Confidence 6789999999999999999887530 01 1125888999999 9999999988777766 5679999
Q ss_pred cCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCC
Q psy2956 133 TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 189 (251)
Q Consensus 133 t~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~ 189 (251)
|++++.++++|++.+||. |++ |.+...-.||+|||||.+
T Consensus 471 T~~~~~GIDip~v~~VI~--------~d~----------p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 471 TTVAEEGLDIKECNIVIR--------YGL----------VTNEIAMVQARGRARADE 509 (699)
T ss_dssp ECSCCTTSCCCSCCCCEE--------ESC----------CCCHHHHHHHHTTSCSSS
T ss_pred ccccccCCccccCCEEEE--------eCC----------CCCHHHHHHHcCCCCCCC
Confidence 999999999999999996 443 234456679999987643
No 64
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.28 E-value=7.6e-06 Score=79.57 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=80.0
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCcccee------eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVE------IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~------~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|++|.. ++.|.+.|+ ..|+.||.. .|+. ..|. ...+.+.+.++.+...|.. ...+|||..+.+..
T Consensus 382 mTGTa~te~~ef~~iY~-l~vv~IPtn-~p~~R~d~~d~v~~--~~~~K~~al~~~i~~~~~~---gqpvLVft~sie~s 454 (853)
T 2fsf_A 382 MTGTADTEAFEFSSIYK-LDTVVVPTN-RPMIRKDLPDLVYM--TEAEKIQAIIEDIKERTAK---GQPVLVGTISIEKS 454 (853)
T ss_dssp EECTTCCCHHHHHHHHC-CEEEECCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHHTT---TCCEEEEESSHHHH
T ss_pred CCCCchhHHHHHHHHhC-CcEEEcCCC-CCceeecCCcEEEe--CHHHHHHHHHHHHHHHhcC---CCCEEEEECcHHHH
Confidence 566665 566777764 778999853 4442 2332 3455666666666555522 33599999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDG 144 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g 144 (251)
+.+.+.|... ++..-.+||.....+...+-..... + .+.+|||+|.++++|+.
T Consensus 455 e~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~-------G-~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 455 ELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYP-------A-AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp HHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTST-------T-CEEEEESCCSSCSCCCT
T ss_pred HHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCC-------C-eEEEecccccCCcCccC
Confidence 9999888753 6778889999765554433332221 3 59999999999999975
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.13 E-value=8.4e-07 Score=81.15 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=77.7
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
.+.+|||.+..+.++.+.+.|. +..+|+.++..++++.+.....+ ..+++++|++++.++
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g------~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTG------RFRAIVSSQVLDEGI 408 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHS------SCSBCBCSSCCCSSS
T ss_pred CCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCC------CCCEEEEcCchhcCc
Confidence 6789999999999888777652 34578889888887776554434 457899999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCC-ccccccceeccc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG-KCFRYIVVVSTN 203 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G-~c~Rl~~i~aTn 203 (251)
++|++.+||.. ++ |.+...-.||.||+||.++| +...+|..++.+
T Consensus 409 dlp~~~~Vi~~--------~~----------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 409 DVPDANVGVIM--------SG----------SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSCCBSEEEEE--------CC----------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ccccCcEEEEE--------CC----------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999888873 22 22445667999999999988 443344444433
No 66
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.11 E-value=7.7e-07 Score=85.71 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=39.9
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+++++|||++|++|+||++.+|||+ ...|| +. ..|+|.++..||+
T Consensus 323 ~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~ 367 (702)
T 2p6r_A 323 IKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMA 367 (702)
T ss_dssp CCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHH
T ss_pred CeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHh
Confidence 4799999999999999999999997 67888 22 6899999999984
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.09 E-value=2.1e-05 Score=76.83 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=78.2
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCcccee------eeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRTHPVE------IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~~pV~------~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|+.|.. ++.|.+.| +..++.||.. .|+. ..|. ...+...+.+..+...|.. ...+|||..+.+..
T Consensus 401 MTGTa~te~~Ef~~iY-~l~vv~IPtn-~p~~R~d~~d~v~~--t~~~K~~al~~~i~~~~~~---gqpvLVft~Sie~s 473 (922)
T 1nkt_A 401 MTGTAQTEAAELHEIY-KLGVVSIPTN-MPMIREDQSDLIYK--TEEAKYIAVVDDVAERYAK---GQPVLIGTTSVERS 473 (922)
T ss_dssp EESCCGGGHHHHHHHH-CCEEEECCCS-SCCCCEECCCEEES--CHHHHHHHHHHHHHHHHHT---TCCEEEEESCHHHH
T ss_pred cccCchhHHHHHHHHh-CCCeEEeCCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHHhc---CCcEEEEECCHHHH
Confidence 455555 44566666 4778899874 3432 2332 3455666666666555532 23599999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccceeeecc
Q psy2956 75 EEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDG 144 (251)
Q Consensus 75 ~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsltI~g 144 (251)
+.+.+.|... ++..-.+||.....+...+-..... + .+.+|||+|.++++|+.
T Consensus 474 E~Ls~~L~~~---------Gi~~~vLnak~~~rEa~iia~agr~-------G-~VtIATnmAgRGtDI~l 526 (922)
T 1nkt_A 474 EYLSRQFTKR---------RIPHNVLNAKYHEQEATIIAVAGRR-------G-GVTVATNMAGRGTDIVL 526 (922)
T ss_dssp HHHHHHHHHT---------TCCCEEECSSCHHHHHHHHHTTTST-------T-CEEEEETTCSTTCCCCT
T ss_pred HHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCC-------C-eEEEecchhhcCccccC
Confidence 9999888763 6778889999754444333222221 3 58999999999999974
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.05 E-value=5.3e-07 Score=86.58 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=48.9
Q ss_pred cceEEEcccc-hHHHH--hcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccc
Q psy2956 167 SLLVSPISKA-SAQQR--AGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPIS 243 (251)
Q Consensus 167 ~l~~~pis~~-~a~qR--~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is 243 (251)
...+.++|.. +.++| .-+.++.++|. .++.+|||++|++|+| +|.+|||.|+.|. .|||+.+.+ ..|+|
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~---~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~~---~~p~s 415 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDP---CKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGERE---LEPIT 415 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSS---CCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCC
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCC---eEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCccc---cccCC
Confidence 3456777754 22211 11223334465 3799999999999999 9999999999998 999985442 68999
Q ss_pred hhhHhhhC
Q psy2956 244 KASAQQRA 251 (251)
Q Consensus 244 ~~~a~qR~ 251 (251)
.+++.||+
T Consensus 416 ~~~~~QR~ 423 (677)
T 3rc3_A 416 TSQALQIA 423 (677)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999994
No 69
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.03 E-value=4.6e-06 Score=79.35 Aligned_cols=142 Identities=22% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccc--------ceeeecceEEEEeCCcccceeeCCccc
Q psy2956 93 GELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAE--------TSLTIDGVVFVIDPGFAKQKVYNPRIR 164 (251)
Q Consensus 93 ~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iae--------tsltI~g~~lVfd~G~~~~~~~~~~~~ 164 (251)
++.+++.||||++.... .++... .+.+.+...+.+ ....-++-++||-+.............
T Consensus 307 ~~~q~il~SAT~~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~ 376 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTD-PFPQSN---------SPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLR 376 (618)
T ss_dssp TSCEEEEECSSCTTCCC-SSCCCS---------SCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCchhhh-hhhccC---------CceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHH
Confidence 47899999999986632 233211 122222221111 001125778899887654432211111
Q ss_pred cccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCCccceee--ccCCCcceeeeecc
Q psy2956 165 VESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVY--NPRIRVESLLVSPI 242 (251)
Q Consensus 165 ~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~--~~~~~~~~l~~~~i 242 (251)
.....+..+|... .++.... ...|+ .++.+|||+||.+|.|| |.+|||+|+.+...+ +.+.++..+...|+
T Consensus 377 ~~g~~v~~lhg~~-R~~~l~~--F~~g~---~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 377 KSGKRVIQLSRKT-FDTEYPK--TKLTD---WDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp HTTCCEEEECTTT-HHHHTTH--HHHSC---CSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred HcCCcEEEEChHH-HHHHHHh--hcCCC---cEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 1234466677532 1222211 12233 46899999999999997 999999999888776 55667888999999
Q ss_pred chhhHhhhC
Q psy2956 243 SKASAQQRA 251 (251)
Q Consensus 243 s~~~a~qR~ 251 (251)
|.++..||+
T Consensus 450 s~~~yiQR~ 458 (618)
T 2whx_A 450 TPASAAQRR 458 (618)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHhc
Confidence 999999984
No 70
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.97 E-value=9.8e-07 Score=84.34 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=68.6
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
++-++||-+...+............+.+.++|....+.. |...|. ++.+|||+||.+|+|| |.+|||+|+
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-----r~~~~~----~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-----IPTIGD----VVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-----SCSSSC----EEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-----HHhCCC----cEEEECChHHccCCCC-CcEEEecCc
Confidence 467888888766543322111122355667775432221 122221 6899999999999998 999999999
Q ss_pred cccee----eccCCCcceeeeeccchhhHhhhC
Q psy2956 223 AKQKV----YNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 223 ~k~~~----~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
.+..+ |||+.+++.+ ..|+|.++..||+
T Consensus 466 ~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRi 497 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRR 497 (666)
T ss_dssp EEEEEEECCCSSSCEEEEE-EEECBHHHHHHHH
T ss_pred ccccccccccccccccccc-cCcCCHHHHHHHh
Confidence 99887 6787888775 6899999999994
No 71
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.97 E-value=5.4e-06 Score=76.50 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=71.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEec-Ccccce
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVST-NIAETS 139 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst-~iaets 139 (251)
.|..++++...++++++.+.|.+. ..++..+|+.++.+++++.+.....+ ..+++++| ++++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g------~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENG------KGIIIVASYGVFSTG 411 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHC------CSCEEEEEHHHHHHS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCC------CCCEEEEEcChhhcc
Confidence 344544445577777766666532 12788999999988887766554433 44699999 999999
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
+++|++.+||.-+. . .+.+.-.||.||+||.++|+
T Consensus 412 iDip~v~~vi~~~~--------~----------~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 412 ISVKNLHHVVLAHG--------V----------KSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp CCCCSEEEEEESSC--------C----------CSCCHHHHHHHHHHTTTCCC
T ss_pred cccccCcEEEEeCC--------C----------CCHHHHHHHHhcccccCCCC
Confidence 99999999997432 1 23456679999999998875
No 72
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.95 E-value=1.1e-06 Score=80.30 Aligned_cols=102 Identities=21% Similarity=0.115 Sum_probs=68.6
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+-++||-+..................+..+|.. +|.-...+...|+ ..+.+||+++|.+|.|| |.+|||+|+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~---~R~~~~~~F~~g~---~~vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK---TFEREYPTIKQKK---PDFILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS---SCC--------CC---CSEEEESSSTTCCTTCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch---hHHHHHhhhcCCC---ceEEEECChhheeeccC-ceEEEeCCc
Confidence 5678888887654332111111113456667752 1211111123344 36899999999999999 999999999
Q ss_pred ccceee-ccCCCcceeeeeccchhhHhhhC
Q psy2956 223 AKQKVY-NPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 223 ~k~~~~-~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
.+.++| ++..++..+...|.|.++..||+
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred cceeeecccccceeeccccccCHHHHHHhc
Confidence 999988 66667888889999999999984
No 73
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.85 E-value=3.1e-06 Score=77.05 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=70.7
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.|-++||-+..................+.++|... .++.-..+ ..|+ ..+.+||+++|.+|.|| +..|||+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~-r~~~~~~f--~~g~---~~vLVaT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT-FESEYPKC--KSEK---WDFVITTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT-HHHHTTHH--HHSC---CSEEEECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc-HHHHHHhh--cCCC---CeEEEECchHHcCcccC-CcEEEecCc
Confidence 56788888876543321111111134566777542 12221111 1233 36899999999999999 999999999
Q ss_pred ccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 223 AKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 223 ~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
.+.++|| +.++......|.|.++..||+
T Consensus 244 ~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~ 271 (431)
T 2v6i_A 244 TIKPILL-DGRVSMQGPIAITPASAAQRR 271 (431)
T ss_dssp EEEEEEE-TTEEEEEEEEECCHHHHHHHH
T ss_pred cccceec-ccceeecccccCCHHHHHHhh
Confidence 9999999 788888999999999999984
No 74
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.75 E-value=7.4e-06 Score=78.69 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=70.2
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+-++||-+...+............+.+..+|... .++....+ ..|+ ..+.+||+++|.+|.|| |.+|||+|.
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~e-R~~v~~~F--~~g~---~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKS-YDTEYPKC--KNGD---WDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSS-HHHHGGGG--GTCC---CSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHH-HHHHHHHH--HCCC---ceEEEECchhhcceeeC-CcEEEECCC
Confidence 56788888876544322111111234566677642 22222222 2343 36899999999999999 999999998
Q ss_pred cccee--eccCCCcceeeeeccchhhHhhhC
Q psy2956 223 AKQKV--YNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 223 ~k~~~--~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
..... ||+..++..+...|.|.++..||+
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~ 513 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRR 513 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHH
T ss_pred cccceeeecccccceecccCCCCHHHHHHHh
Confidence 77654 788888888889999999999984
No 75
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.74 E-value=0.00011 Score=69.22 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=72.5
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
..+.+|||.+..+.++.+.+.|...........++ .+..+|+.++. .+++.......+... .+.++++|++++++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~~i~g~~~~-~r~~~l~~F~~~~~~---~~~ilvtt~~l~~G 512 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPD-YVARVTSEEGK-IGKGHLSRFQELETS---TPVILTTSQLLTTG 512 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTT-SEEECSSTTHH-HHHHHHHHHHCTTCC---CCCEEEESSTTTTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCC-eEEEEeCCChH-HHHHHHHHHhCCCCC---CCEEEEECChhhcC
Confidence 35789999999999999999987654332222222 35677887653 233333222211100 34478899999999
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC--Ccc
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP--GKC 193 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~--G~c 193 (251)
+++|++.+||. +++. -+...-.||.||+||..+ |+.
T Consensus 513 iDip~v~~Vi~--------~~~~----------~s~~~~~Q~iGR~~R~~~~~~k~ 550 (590)
T 3h1t_A 513 VDAPTCKNVVL--------ARVV----------NSMSEFKQIVGRGTRLREDYGKL 550 (590)
T ss_dssp CCCTTEEEEEE--------ESCC----------CCHHHHHHHHTTSCCCBGGGTBS
T ss_pred ccchheeEEEE--------EecC----------CChHHHHHHHhhhcccCccCCCC
Confidence 99999998886 2221 123345699999999887 653
No 76
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.72 E-value=6.2e-06 Score=79.62 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=38.7
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+++++|||++|++|+||++.+|||.+ ..|| ..| ..|+|.++..||+
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQML 366 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHH
T ss_pred CeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHH
Confidence 47999999999999999999999965 6677 333 2789999999984
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.65 E-value=6.2e-05 Score=75.14 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=78.7
Q ss_pred cCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCcccce
Q psy2956 60 VEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETS 139 (251)
Q Consensus 60 ~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaets 139 (251)
..+.++||.+....++.+.+.|... .++++..+|+.++..++.+.+.....+. ...+++++|++++.+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~----~~~~vLvaT~v~~~G 569 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEED----TGAQVLLCSEIGSEG 569 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTT----SSCEEEECSCCTTCS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCC----CcccEEEecchhhcC
Confidence 3678999999999999988888642 2678999999999988877765444331 026799999999999
Q ss_pred eeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 140 ltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
+++|++.+||. |++ |.+...-.||.||+||.+..+
T Consensus 570 lDl~~~~~VI~--------~d~----------p~~~~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 570 RNFQFASHMVM--------FDL----------PFNPDLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp SCCTTCCEEEC--------SSC----------CSSHHHHHHHHHTTSCSSSCS
T ss_pred CCcccCcEEEE--------ecC----------CCCHHHHHHHhhccccCCCCc
Confidence 99999999987 332 223445579999999976543
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.35 E-value=2.5e-05 Score=64.07 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=43.7
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccc-hHHH--HhcccCCCCCCccccccceeccccccceeecCceEEEEe
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA-SAQQ--RAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVID 219 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~-~a~q--R~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD 219 (251)
++-++||-++.................+.++|.. +..+ +....++ .|. .++.+|||+|+.+|+||+|.+||+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~--~g~---~~vlvaT~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR--QGE---VRVLVATDVAARGLDIPQVDLVVH 105 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHH--SSS---CCEEEECTTTTCSSSCCCBSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH--CCC---CeEEEecChhhcCCCCccCcEEEE
Confidence 3456666666543322111111123456667654 2222 2222222 343 368999999999999999999999
Q ss_pred CCC
Q psy2956 220 PGF 222 (251)
Q Consensus 220 ~g~ 222 (251)
.|+
T Consensus 106 ~~~ 108 (212)
T 3eaq_A 106 YRL 108 (212)
T ss_dssp SSC
T ss_pred CCC
Confidence 776
No 79
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.34 E-value=0.00065 Score=57.87 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=60.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHh---cccCCCCCCCCCccceEEEecCccc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRI---FEAAPANKPNGGIGRKVVVSTNIAE 137 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~---f~~~p~~~~~g~~~rkiivst~iae 137 (251)
...+|||......++.+.+.|.... ++.+..+++.++.+++.+. |+..+. .+-++++|+.+.
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~-------~~v~L~st~~~g 176 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPS-------VKFIVLSVKAGG 176 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTT-------CCEEEEECCTTC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCC-------CCEEEEehhhhc
Confidence 4579999999999888888876421 3556778999998877765 444322 234788999999
Q ss_pred ceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCC
Q psy2956 138 TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190 (251)
Q Consensus 138 tsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~ 190 (251)
.+++++++..||. |++. .+.+...||.||++|.+.
T Consensus 177 ~Glnl~~a~~VI~--------~d~~----------wnp~~~~Q~~gR~~R~Gq 211 (271)
T 1z5z_A 177 FGINLTSANRVIH--------FDRW----------WNPAVEDQATDRVYRIGQ 211 (271)
T ss_dssp CCCCCTTCSEEEE--------CSCC----------SCTTTC------------
T ss_pred CCcCcccCCEEEE--------ECCC----------CChhHHHHHHHhccccCC
Confidence 9999998888887 3332 223333478887777654
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.18 E-value=3.3e-05 Score=67.03 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=45.6
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccc--h-HHHHhcccCCCCCCccccccceeccccccceeecCceEEEEe
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA--S-AQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVID 219 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~--~-a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD 219 (251)
++-++||-++...............+.+.++|.. . .++++...++ .|. .++.+|||+|+++|+||+|.+||+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~--~g~---~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR--QGE---VRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHH--HTS---CCEEEECSTTTCSTTCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh--cCC---ceEEEEechhhcCccccceeEEEE
Confidence 4566777776654332111111123456677754 2 2222222222 233 368999999999999999999999
Q ss_pred CCCc
Q psy2956 220 PGFA 223 (251)
Q Consensus 220 ~g~~ 223 (251)
.|+-
T Consensus 103 ~d~p 106 (300)
T 3i32_A 103 YRMP 106 (300)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8763
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.12 E-value=0.003 Score=60.14 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=74.6
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|||-.....++.+.+.|... ++.+..+++.++.+++.+.......+... ...++++|+.+..++
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~---~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSP---EFIFMLSSKAGGCGL 483 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCC---CCEEEEEGGGSCTTC
T ss_pred CCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCC---cEEEEEecccccCCc
Confidence 456999999999888877777642 56788899999988877764333222100 235788999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
+++++..||. |++ |.+.+...|+.||++|.++.+
T Consensus 484 nl~~a~~Vi~--------~d~----------~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 484 NLIGANRLVM--------FDP----------DWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp CCTTEEEEEE--------CSC----------CSSHHHHHHHHTTSSSTTCCS
T ss_pred ccccCCEEEE--------ECC----------CCCccHHHHHHHhhhhcCCCC
Confidence 9999988887 333 234566789999998877644
No 82
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.10 E-value=0.00013 Score=64.69 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=39.4
Q ss_pred ceEEEEeCCcccceeeCCccccccceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 144 GVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 144 g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
+-++||-...................+.++|.. +..+|.-...+...|. .++.++|+++|.+|.+|+|.+||+.+.
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS---SRVLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSSCC--CCGGGCSCEEESSC
T ss_pred CcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC---CcEEEECCccccCCCccCCCEEEEeCC
Confidence 456777766554332211111223455667654 3333321111123344 368999999999999999999998665
No 83
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.92 E-value=0.0024 Score=58.46 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
...+|||.......+.+.+.|.... +..+..+|+.++.+++.+.......+. ..+.++++|+.+..++
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~----~~~vil~st~~~~~Gl 408 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNP----SVKFIVLSVKAGGFGI 408 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCT----TCCCCEEECCCC-CCC
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCC----CCCEEEEecccccCCC
Confidence 5679999999998888888776532 345677899999887776643322110 0234788999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
+++++..||.- ++. .+.+...||.||++|.++.+
T Consensus 409 nl~~~~~vi~~--------d~~----------~~~~~~~Q~~gR~~R~Gq~~ 442 (500)
T 1z63_A 409 NLTSANRVIHF--------DRW----------WNPAVEDQATDRVYRIGQTR 442 (500)
T ss_dssp CCTTCSEEEES--------SCC----------SCC---CHHHHTTTTTTTTS
T ss_pred chhhCCEEEEe--------CCC----------CCcchHHHHHHHHHHcCCCC
Confidence 99988777763 222 23334458999998877644
No 84
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.017 Score=56.29 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=73.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecCccccee
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSL 140 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~iaetsl 140 (251)
..-+|||-.-...++.+.+.|... ++.+..+++.++..++++.+.....+... ...++++|..+..++
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~---~~v~LlSt~agg~Gl 639 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSN---DFVFLLSTRAGGLGI 639 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCS---CCCEEEEHHHHTTTC
T ss_pred CCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCC---ceEEEEecccccCCC
Confidence 457999999998888887777642 56778899999999888776554432111 346889999999999
Q ss_pred eecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCCc
Q psy2956 141 TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 192 (251)
Q Consensus 141 tI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G~ 192 (251)
.+++.-.||. |++ |-+.+...||.||+.|.++.+
T Consensus 640 NL~~a~~VI~--------~D~----------~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 640 NLMTADTVVI--------FDS----------DWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp CCTTCCEEEE--------SSC----------CSCSHHHHHHHTTTSCSSCCS
T ss_pred CccccceEEE--------ecC----------CCChhhHHHHHHHHHhcCCCc
Confidence 9988777766 222 234456678888888865543
No 85
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.24 E-value=0.0022 Score=56.57 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=44.6
Q ss_pred ceEEEEeCCcccceeeCCccccccceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 144 GVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 144 g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
+-++||-...................+..+|.. +..+|.-...+...|+ .++.++|+++|.+|.+|++.+||+.++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gidip~~~~Vi~~~~ 343 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK---EKVLVTTNVCARGIDVEQVSVVINFDL 343 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS---CSEEEECGGGTSSCCCTTEEEEEESSC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC---CcEEEEcCccccCCCccCCCEEEEECC
Confidence 567777776543322111111112345556543 2222221111112344 268999999999999999999999776
Q ss_pred ccce
Q psy2956 223 AKQK 226 (251)
Q Consensus 223 ~k~~ 226 (251)
-...
T Consensus 344 p~~~ 347 (412)
T 3fht_A 344 PVDK 347 (412)
T ss_dssp CBCS
T ss_pred CCCC
Confidence 5443
No 86
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.94 E-value=0.0016 Score=56.48 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=23.9
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++.++.+|++.+||+.+.
T Consensus 290 ~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 290 RILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred eEEEECChhhcCCCcccCCEEEEecC
Confidence 68999999999999999999998765
No 87
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.50 E-value=0.0093 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.7
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|+++|.++.+|++.+||+.+.
T Consensus 295 ~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 295 KVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred CEEEECChhhcCCCcccCCEEEEcCC
Confidence 58999999999999999999998654
No 88
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.18 E-value=0.0099 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=0.0
Q ss_pred cceeccccccceeecCceEEEEeCCCcc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFAK 224 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~k 224 (251)
.+.++|++++..|.+|+|.+||+.++-.
T Consensus 385 ~iLv~T~~~~~GlDip~v~~VI~~d~p~ 412 (479)
T 3fmp_B 385 KVLVTTNVCARGIDVEQVSVVINFDLPV 412 (479)
T ss_dssp ----------------------------
T ss_pred cEEEEccccccCCccccCCEEEEecCCC
Confidence 6899999999999999999999877543
No 89
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.78 E-value=0.019 Score=50.69 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=42.2
Q ss_pred ceEEEEeCCcccceeeCCccccccceEEEcccc-hHHHHhcccCCCCCCccccccceeccccccceeecCceEEEEeCCC
Q psy2956 144 GVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 144 g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
+-++||-...................+..+|.. +..+|....-+...|. ..+.++|+++|.+|.+|+|.+||+.+.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlvaT~~~~~Gidip~v~~Vi~~~~ 353 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK---SPILVATAVAARGLDISNVKHVINFDL 353 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS---SCEEEECHHHHTTSCCCCEEEEEESSC
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEEcC
Confidence 456777766543322111111122345566643 2222221100111233 258999999999999999999998665
No 90
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.67 E-value=0.027 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.7
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
++.++|++++.++.+|++.+||+.+.
T Consensus 310 ~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 310 RTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cEEEEcCccccCCCccCCCEEEEeCC
Confidence 68999999999999999999998654
No 91
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.49 E-value=0.046 Score=51.45 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=25.5
Q ss_pred cceeccccccceeecCceEEEEeCCCcc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFAK 224 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~k 224 (251)
.+++||++++..|.+|+|.+||+.++-+
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~ 346 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSK 346 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCS
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCC
Confidence 6899999999999999999999987654
No 92
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.38 E-value=0.015 Score=53.84 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.9
Q ss_pred ccceeccccccceeecCceEEEEeCCCc
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
..+++||++++..|.+|+|.+||+.+.-
T Consensus 287 ~~vlVaT~a~~~GiD~p~v~~VI~~~~p 314 (523)
T 1oyw_A 287 LQIVVATVAFGMGINKPNVRFVVHFDIP 314 (523)
T ss_dssp CSEEEECTTSCTTTCCTTCCEEEESSCC
T ss_pred CeEEEEechhhCCCCccCccEEEEECCC
Confidence 3689999999999999999999987653
No 93
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.16 E-value=0.34 Score=48.66 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=34.2
Q ss_pred cceEEEecCcccceeeecceEEEEeCCcccceeeCCccccccceEEEcccchHHHHhcccCCCCCC
Q psy2956 126 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 191 (251)
Q Consensus 126 ~rkiivst~iaetsltI~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~~a~qR~gragr~~~G 191 (251)
.-+++++||.+.+++++|.+-.++. + .|++.....||.||++|..++
T Consensus 649 ~i~ILIvvd~lltGfDiP~l~tlyl---------D----------kpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 649 DIDLLIVVGMFLTGFDAPTLNTLFV---------D----------KNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp SSSEEEESSTTSSSCCCTTEEEEEE---------E----------SCCCHHHHHHHHHTTCCCCCT
T ss_pred CCeEEEEcchHHhCcCcccccEEEE---------c----------cCCCccceeehhhccCcCCCC
Confidence 3579999999999999998743332 1 123334557999999998876
No 94
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.97 E-value=0.08 Score=49.16 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCC-CChhhHHHhcccCCCCCCCC
Q psy2956 45 EAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYST-LPPNLQQRIFEAAPANKPNG 123 (251)
Q Consensus 45 ~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsat-l~~~~~~~~f~~~p~~~~~g 123 (251)
....+.+.++... .+|.+|||+|+...++++.+.|.. ..++ ..+. -+.+...+-|..
T Consensus 370 ~~~~~~l~~~~~~--~~g~~lvff~S~~~~~~v~~~l~~-----------~~~~-~q~~~~~~~~~l~~f~~-------- 427 (540)
T 2vl7_A 370 PIYSILLKRIYEN--SSKSVLVFFPSYEMLESVRIHLSG-----------IPVI-EENKKTRHEEVLELMKT-------- 427 (540)
T ss_dssp HHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHTTCTT-----------SCEE-ESTTTCCHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHhcc-----------CceE-ecCCCCcHHHHHHHHhc--------
Confidence 4444445454432 478999999999999988776531 2222 2322 233344444533
Q ss_pred CccceEEE--ecCcccceeeecc----eEEEEeCCcc
Q psy2956 124 GIGRKVVV--STNIAETSLTIDG----VVFVIDPGFA 154 (251)
Q Consensus 124 ~~~rkiiv--st~iaetsltI~g----~~lVfd~G~~ 154 (251)
+..+.+ +|+..--+++++| ..+||..|+-
T Consensus 428 --~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lP 462 (540)
T 2vl7_A 428 --GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLP 462 (540)
T ss_dssp --SCCEEEEEC---------------CEEEEEEESCC
T ss_pred --CCeEEEEEecCceecceecCCCcccccEEEEECCC
Confidence 123555 7788888899998 5788888763
No 95
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.79 E-value=0.038 Score=48.20 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=0.0
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
++.++|++++..+.+|++.+||+.+.
T Consensus 311 ~vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 311 RILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------
T ss_pred cEEEECChhhcCCCcccCCEEEEeCC
Confidence 68899999999999999999998664
No 96
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.52 E-value=0.069 Score=47.96 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.9
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.+||++|+..|.||+|.+||+.++
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~ 377 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDM 377 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSC
T ss_pred cEEEEchhhhCCCCcccCCEEEEECC
Confidence 68999999999999999999998665
No 97
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.09 E-value=0.11 Score=45.30 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.7
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||..+.
T Consensus 302 ~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 302 RILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp SEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred cEEEECChhhcCCCcccCCEEEEeCC
Confidence 58899999999999999999998664
No 98
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.44 E-value=0.025 Score=43.77 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=23.9
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||+.+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCC
Confidence 58899999999999999999999765
No 99
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=92.25 E-value=0.02 Score=54.50 Aligned_cols=26 Identities=19% Similarity=0.361 Sum_probs=20.4
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
++.+||++||++|.||+|.+||+.+.
T Consensus 463 ~vLVaT~v~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 463 NILIATSVADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCSEEEESSCCC---CCCSEEEEESC
T ss_pred cEEEEechhhcCCcCccCCEEEEeCC
Confidence 68999999999999999999998444
No 100
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=90.71 E-value=1.9 Score=42.59 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=49.0
Q ss_pred eeeccC--hHHHHHhcCCCCeEEeCCCc------cceeeeeCCCCchhHHHHHHHHHHHHhhccccCCCEEEecCCHHHH
Q psy2956 3 IFATRR--QHLTRQYFDNAPLMNVPGRT------HPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEI 74 (251)
Q Consensus 3 ~sAT~~--~~~~~~yf~~~pvi~i~g~~------~pV~~~y~~~~~~~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei 74 (251)
|+.|.. ++.|.+.| +..|+.||.-. +|- ..| ......+.+.++.+.+.|.. .--+||+..+.++-
T Consensus 384 MTGTA~tE~~Ef~~iY-~l~Vv~IPTn~p~~R~D~~d-~vy--~t~~~K~~AIv~eI~~~~~~---GqPVLVgT~SIe~S 456 (997)
T 2ipc_A 384 MTGTAKTEEKEFQEIY-GMDVVVVPTNRPVIRKDFPD-VVY--RTEKGKFYAVVEEIAEKYER---GQPVLVGTISIEKS 456 (997)
T ss_dssp EESSCGGGHHHHHHHH-CCCEEECCCSSCCCCEEEEE-EEE--SSHHHHHHHHHHHHHHHHHH---TCCEEEECSSHHHH
T ss_pred cCCCchHHHHHHHHHh-CCCEEEcCCCCCcccccCCC-eEE--cCHHHHHHHHHHHHHHHHHC---CCCEEEEeCCHHHH
Confidence 455555 45566655 47788888732 222 233 23456677778888887754 33599999999998
Q ss_pred HHHHHHHH
Q psy2956 75 EEACKRIK 82 (251)
Q Consensus 75 ~~~~~~L~ 82 (251)
+.+.+.|.
T Consensus 457 E~LS~~L~ 464 (997)
T 2ipc_A 457 ERLSQMLK 464 (997)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888877
No 101
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.11 E-value=0.06 Score=41.48 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.6
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||+.+.
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDL 112 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCC
Confidence 58899999999999999999998664
No 102
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.80 E-value=0.41 Score=44.08 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.2
Q ss_pred cceeccccccceeecCceEEEEeCCCc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
.+.+||++++..|.||+|.+||..+.-
T Consensus 394 ~vLvaT~~~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 394 GILVCTDVGARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred CEEEEcchhhcCCCcccCCEEEEECCC
Confidence 689999999999999999999987643
No 103
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=88.99 E-value=0.2 Score=50.58 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=35.1
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+++.+||++++.+|.||++.+||+. ...||+. ...|+|.++..||+
T Consensus 531 ikVLVAT~vla~GIDiP~v~~VI~~----~~~~d~~------~~r~iS~~eyiQr~ 576 (1108)
T 3l9o_A 531 LKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQ------QFRWVSGGEYIQMS 576 (1108)
T ss_dssp CCEEEEESCCCSCCCC--CEEEESC----SEEESSS------CEEECCHHHHHHHH
T ss_pred CeEEEECcHHhcCCCCCCceEEEec----CcccCcc------ccccCCHHHHHHhh
Confidence 3789999999999999999999974 2355554 24688999999984
No 104
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.92 E-value=0.094 Score=46.14 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.8
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++.+|.+|++.+||+.+.
T Consensus 328 ~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 328 RVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred CEEEECChhhCcCCcccCCEEEEECC
Confidence 58899999999999999999998664
No 105
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.26 E-value=0.085 Score=40.91 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||+.+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~ 107 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDM 107 (170)
Confidence 58899999999999999999998654
No 106
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.96 E-value=0.59 Score=43.43 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.1
Q ss_pred cceeccccccceeecCceEEEEeCCCc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
.+.+||++++..|.||+|.+||..+.-
T Consensus 343 ~vLVaT~~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 343 GILVCTDVGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred eEEEEcchhhcCCCcccCCEEEEcCCC
Confidence 588999999999999999999986643
No 107
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.93 E-value=0.17 Score=39.38 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=23.6
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||+.+.
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDL 111 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSC
T ss_pred eEEEEecchhcCCCcccCCEEEEeCC
Confidence 58899999999999999999998654
No 108
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=86.93 E-value=0.3 Score=49.08 Aligned_cols=72 Identities=6% Similarity=0.009 Sum_probs=38.4
Q ss_pred cceEEEEeCCcccceeeCCccccccceEEEcccc-hHHHHhcccCCCCCCccccccceec----cccccceeecCce-EE
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKA-SAQQRAGRAGRTRPGKCFRYIVVVS----TNIAETSLTIDGV-VF 216 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~pis~~-~a~qR~gragr~~~G~c~Rl~~i~a----TniaEtsiti~~v-~~ 216 (251)
++-++||-.+.............. +.+.++|.. ....+.++.| . ..+.+| ||+++.+|.||+| .+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~l~~F~~G-----~---~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGDYEKFVEG-----E---IDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHHHHHHHHT-----S---CSEEEEECC------CCSCCTTTCCE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHHHHHHHcC-----C---CcEEEEecCCCCeeEeccccCCcccE
Confidence 345666666554322211111111 456666654 2333334433 2 257889 9999999999995 99
Q ss_pred EEeCCCc
Q psy2956 217 VIDPGFA 223 (251)
Q Consensus 217 ViD~g~~ 223 (251)
||+.|.-
T Consensus 346 VI~~~~P 352 (1054)
T 1gku_B 346 AVFVGCP 352 (1054)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 9999988
No 109
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=86.79 E-value=0.18 Score=46.32 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=16.9
Q ss_pred cceeccccccceeecCceEEEEeCCCc
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGFA 223 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~~ 223 (251)
++.++|+++++++.+|+|.+||+.+.-
T Consensus 409 ~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 409 KVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp CCCEECC-----CCCTTCCEEEC----
T ss_pred eEEEeCChhhcCCCccCCCEEEEECCC
Confidence 589999999999999999999976543
No 110
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=85.96 E-value=0.86 Score=40.09 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=24.6
Q ss_pred cceec----cccccceeecCc-eEEEEeCCCc
Q psy2956 197 IVVVS----TNIAETSLTIDG-VVFVIDPGFA 223 (251)
Q Consensus 197 ~~i~a----TniaEtsiti~~-v~~ViD~g~~ 223 (251)
.+.+| |++++..|.||+ |.+||+.|+-
T Consensus 299 ~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p 330 (414)
T 3oiy_A 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 330 (414)
T ss_dssp SEEEEECCTTCCCCCCCCCTTTCCEEEEESCC
T ss_pred eEEEEecCcCchhhccCccccccCEEEEECCC
Confidence 68899 999999999999 9999987765
No 111
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=84.35 E-value=0.32 Score=48.59 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=35.8
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
.++.+|||+++.+|++|+ +.||..+..| ||+. ...|+|.++..||+
T Consensus 426 ~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMA 471 (997)
T ss_dssp CSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHH
T ss_pred CcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHh
Confidence 379999999999999999 6666666554 6655 23589999999973
No 112
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=84.33 E-value=0.32 Score=49.14 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=45.2
Q ss_pred cceEEEEeCCcccceeeCCccccccceEE-EcccchHHHHhcccCCCCCCccccccceec----cccccceeecCc-eEE
Q psy2956 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVS-PISKASAQQRAGRAGRTRPGKCFRYIVVVS----TNIAETSLTIDG-VVF 216 (251)
Q Consensus 143 ~g~~lVfd~G~~~~~~~~~~~~~~~l~~~-pis~~~a~qR~gragr~~~G~c~Rl~~i~a----TniaEtsiti~~-v~~ 216 (251)
++-++||-+.................... .+|....+...++. |. ..+.++ |++++..|.||+ |.+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~l~~F~~-----G~---~~VLVatas~TdvlarGIDip~~V~~ 380 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKV-----GK---INILIGVQAYYGKLTRGVDLPERIKY 380 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHHHHHHHH-----TS---CSEEEEETTTHHHHCCSCCCTTTCCE
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHHHHHHHC-----CC---CCEEEEecCCCCeeEecCcCCCCCCE
Confidence 46678887765433221111111123344 56653111223332 33 368899 999999999999 999
Q ss_pred EEeCCCcc
Q psy2956 217 VIDPGFAK 224 (251)
Q Consensus 217 ViD~g~~k 224 (251)
||+.|+-+
T Consensus 381 VI~~d~P~ 388 (1104)
T 4ddu_A 381 VIFWGTPS 388 (1104)
T ss_dssp EEEESCCE
T ss_pred EEEECCCC
Confidence 99999888
No 113
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=84.09 E-value=0.24 Score=41.94 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.7
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++.++.+|++.+||+.+.
T Consensus 268 ~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 268 DMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp SEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred cEEEEcCccccCCCccCCCEEEEecC
Confidence 68999999999999999999998654
No 114
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=84.06 E-value=14 Score=33.88 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCC
Q psy2956 42 DYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKP 121 (251)
Q Consensus 42 ~~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~ 121 (251)
++.....+.+.++... .+|.+|||+|+...++++.+. .+..++.=...++.+...+.|...
T Consensus 376 ~~~~~l~~~i~~l~~~--~~g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~~~----- 436 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ--AKANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAISAN----- 436 (551)
T ss_dssp HHHHHHHHHHHHHHHH--CSSEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTTSS-----
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHHhc-----
Confidence 3455566666665533 488999999999999888751 134455444445666677777521
Q ss_pred CCCccceEEEec---Ccccceeeec---c--eEEEEeCCc
Q psy2956 122 NGGIGRKVVVST---NIAETSLTID---G--VVFVIDPGF 153 (251)
Q Consensus 122 ~g~~~rkiivst---~iaetsltI~---g--~~lVfd~G~ 153 (251)
+.-+++++ ...| +++++ | ...||-.|+
T Consensus 437 ----~~~vl~~v~gg~~~E-GiD~~d~~g~~l~~viI~~l 471 (551)
T 3crv_A 437 ----NKVLIGSVGKGKLAE-GIELRNNDRSLISDVVIVGI 471 (551)
T ss_dssp ----SSCEEEEESSCCSCC-SSCCEETTEESEEEEEEESC
T ss_pred ----CCeEEEEEecceecc-cccccccCCcceeEEEEEcC
Confidence 23577776 4444 56666 5 467776664
No 115
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.54 E-value=0.15 Score=40.28 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=17.3
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||+.+.
T Consensus 98 ~vLvaT~~~~~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 98 PILVATAVAARGLDISNVKHVINFDL 123 (185)
T ss_dssp SEEEEEC------CCCSBSEEEESSC
T ss_pred eEEEEcChhhcCCCcccCCEEEEeCC
Confidence 57899999999999999999998554
No 116
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=79.89 E-value=0.17 Score=40.14 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.5
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||+.+.
T Consensus 106 ~vLvaT~~~~~Gldi~~v~~VI~~d~ 131 (191)
T 2p6n_A 106 DVLVATDVASKGLDFPAIQHVINYDM 131 (191)
T ss_dssp SEEEECHHHHTTCCCCCCSEEEESSC
T ss_pred EEEEEcCchhcCCCcccCCEEEEeCC
Confidence 57899999999999999999998654
No 117
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=79.55 E-value=0.95 Score=45.29 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=37.4
Q ss_pred ccceeccccccceeecCceEEEEeCCCccceeeccCCCcceeeeeccchhhHhhhC
Q psy2956 196 YIVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251 (251)
Q Consensus 196 l~~i~aTniaEtsiti~~v~~ViD~g~~k~~~~~~~~~~~~l~~~~is~~~a~qR~ 251 (251)
+++.+||++++.+|.+|++.+||+. ...||... ..|+|.++..||+
T Consensus 433 ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~ 478 (1010)
T 2xgj_A 433 LKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMS 478 (1010)
T ss_dssp CSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHH
T ss_pred CcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhh
Confidence 4799999999999999999999984 45576543 4688888888873
No 118
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.54 E-value=0.42 Score=37.07 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++..+.+|++.+||..+.
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSC
T ss_pred cEEEECCchhcCcchhhCCEEEEECC
Confidence 57899999999999999999998654
No 119
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=75.78 E-value=1 Score=36.59 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCeEEEEccCCCChhhHHHhcccCCC
Q psy2956 92 AGELKCIPLYSTLPPNLQQRIFEAAPA 118 (251)
Q Consensus 92 ~~~l~vi~lsatl~~~~~~~~f~~~p~ 118 (251)
.++.+++.+|||++.+.+.+||..+|.
T Consensus 206 ~~~~~~il~SAT~~~~~~~~~~~~~pv 232 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSMFCEYFFNCPI 232 (235)
T ss_dssp CTTSEEEEEECSSCCHHHHHHTTSCCC
T ss_pred CCCCeEEEEecCCCHHHHHHHcCCCCE
Confidence 357899999999999999999988764
No 120
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=75.07 E-value=2.3 Score=43.14 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.9
Q ss_pred cceeccccccceeecCceEEEE
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVI 218 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~Vi 218 (251)
.+.+||+++|++|.||++.+||
T Consensus 866 ~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 866 NVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp CEEEESSTTGGGSCCTTEEEEE
T ss_pred cEEEECCcceeeecccCCcEEE
Confidence 5899999999999999999988
No 121
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=70.64 E-value=0.7 Score=43.70 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred cceeccccccceeecCceEEEEeCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
.+.+||++++..|.||+|.+||.-+
T Consensus 466 ~VLVaT~~~~~GIDip~v~~VI~~d 490 (699)
T 4gl2_A 466 NLLIATTVAEEGLDIKECNIVIRYG 490 (699)
T ss_dssp CCSEEECSCCTTSCCCSCCCCEEES
T ss_pred cEEEEccccccCCccccCCEEEEeC
Confidence 5889999999999999999999533
No 122
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=67.32 E-value=2.2 Score=38.61 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=11.2
Q ss_pred cceeccccccceeecCceEEEEeC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
.+.+||++++..|.||+|.+||..
T Consensus 455 ~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 455 RLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp CEEEEEC-----------CEEEEE
T ss_pred EEEEEcCchhcCCCchhCCEEEEe
Confidence 588999999999999999999963
No 123
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=66.90 E-value=7.5 Score=36.54 Aligned_cols=38 Identities=11% Similarity=0.270 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhccccCCCEEEecCCHHHHHHHHHHHH
Q psy2956 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIK 82 (251)
Q Consensus 43 ~~~~~~~~v~~i~~~~~~~g~iLvFLpg~~ei~~~~~~L~ 82 (251)
+.....+.+.++... .+|.+|||+|+...++++.+.|.
T Consensus 432 ~~~~~~~~i~~l~~~--~~g~~lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 432 ELDRMATVIEDIILK--VKKNTIVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp HHHHHHHHHHHHHHH--HCSCEEEEESCHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHHH
Confidence 344445555555432 37889999999999988877654
No 124
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=66.35 E-value=1.7 Score=41.23 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=24.0
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++||+++..+.+|+|.+||.++.
T Consensus 491 ~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 491 DCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp SEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred eEEEccChhhcCccCCCCCEEEEeCC
Confidence 58899999999999999999998875
No 125
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=63.19 E-value=3.8 Score=36.92 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.6
Q ss_pred cceeccccccceeecCceEEEEeCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
.+.+||++++..|.+|+|.+||..+
T Consensus 454 ~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 454 NILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp SEEEECCCTTCCEETTSCSEEEEES
T ss_pred eEEEEcchhhcCCccccCCEEEEeC
Confidence 5889999999999999999999744
No 126
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.09 E-value=3.5 Score=40.78 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=16.1
Q ss_pred cceeccccccceeecCceEEEEeC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDP 220 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~ 220 (251)
.+.+||++++..|.||+|.+||.-
T Consensus 696 ~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 696 RLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SEEEEECC------CCCCSEEEEE
T ss_pred eEEEEeCchhcCCcchhCCEEEEe
Confidence 588999999999999999999963
No 127
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=57.48 E-value=2.3 Score=40.43 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=23.9
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++||+++..+.+|+|.+||..+.
T Consensus 497 ~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 497 DVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp SEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred EEEEecchhhCCcccCCCCEEEEeCc
Confidence 58899999999999999999998875
No 128
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=43.61 E-value=9.8 Score=36.86 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.3
Q ss_pred cceeccccccceeecCceEEEEeCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
.+.+||+++|..|.||++.+||.-+
T Consensus 641 ~ILVaT~vie~GIDiP~v~~VIi~d 665 (780)
T 1gm5_A 641 DILVSTTVIEVGIDVPRANVMVIEN 665 (780)
T ss_dssp SBCCCSSCCCSCSCCTTCCEEEBCS
T ss_pred eEEEECCCCCccccCCCCCEEEEeC
Confidence 5889999999999999999999643
No 129
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=40.19 E-value=8 Score=37.26 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=15.5
Q ss_pred cceeccccccceeecCceEEEEeCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
.+.+||++++..|.||+|.+||..+
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp SEEEEECC-------CCCSEEEEES
T ss_pred eEEEEcCchhcCCCchhCCEEEEeC
Confidence 5889999999999999999999743
No 130
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=35.81 E-value=13 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.0
Q ss_pred cceeccccccceeecCceEEEEeCCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPGF 222 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g~ 222 (251)
.+.++|++++.+|++|++.+||..+.
T Consensus 421 ~vLv~T~~~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 421 NVLVATSVGEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp SEEEECGGGGGGGGSTTCCEEEESSC
T ss_pred eEEEECCccccCCCchhCCEEEEeCC
Confidence 57899999999999999999997543
No 131
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=30.13 E-value=2.1e+02 Score=22.92 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=28.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcc
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFE 114 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~ 114 (251)
+.++.+-.-|.++|..+.+. ..|.++|+|=+.-+ .++++.|+
T Consensus 128 P~nMVlT~QGsDDIrkLld~---------hGRrDiKlIDV~lt---~eqaR~FE 169 (243)
T 3q7c_A 128 PRNMVITCQGSDDIRKLLES---------QGRKDIKLIDIALS---KTDSRKYE 169 (243)
T ss_dssp CTTCEEEESSHHHHHHHHHH---------TTCTTSEEEECCCC---HHHHTTTH
T ss_pred CcCcEEEeeChHHHHHHHHh---------cCCccceEEEeecC---HHHHHHHH
Confidence 56777888999999875432 24579999876532 34555554
No 132
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=29.10 E-value=21 Score=31.64 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=22.2
Q ss_pred cceeccccccceeecCceEEEEeCC
Q psy2956 197 IVVVSTNIAETSLTIDGVVFVIDPG 221 (251)
Q Consensus 197 ~~i~aTniaEtsiti~~v~~ViD~g 221 (251)
.+.++|++++..+.+|++.+||..+
T Consensus 396 ~vLv~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 396 RAIVSSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEEC
T ss_pred CEEEEcCchhcCcccccCcEEEEEC
Confidence 5789999999999999999999743
No 133
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=20.80 E-value=19 Score=22.59 Aligned_cols=33 Identities=42% Similarity=0.557 Sum_probs=24.2
Q ss_pred cceeecCc--eEEEEeCCCccc-eeeccCCCcceee
Q psy2956 206 ETSLTIDG--VVFVIDPGFAKQ-KVYNPRIRVESLL 238 (251)
Q Consensus 206 Etsiti~~--v~~ViD~g~~k~-~~~~~~~~~~~l~ 238 (251)
.||+||.| |.||-|.-..|- .+|-|-+..++|+
T Consensus 18 dtsltingkeisyvhdavknkwssrylpytqydsll 53 (73)
T 2jv8_A 18 DTSLTINGKEISYVHDAVKNKWSSRYLPYTQYDSLL 53 (73)
T ss_dssp TEEEEETTEECCCCCCSSSCCCCCTTSTTCCCSCHH
T ss_pred CceeEECCEEeehHHHHHhcccccccCCchhhHHHH
Confidence 58999986 677888655443 3788888888775
No 134
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=20.02 E-value=2.9e+02 Score=21.46 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHhhhhcCCCCCCeEEEEccCCCChhhHHHhcccCCCCCCCCCccceEEEecC
Q psy2956 61 EGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTN 134 (251)
Q Consensus 61 ~g~iLvFLpg~~ei~~~~~~L~~~~~~l~~~~~~l~vi~lsatl~~~~~~~~f~~~p~~~~~g~~~rkiivst~ 134 (251)
.+.+|+..|..+-+.+..+.+....+.. ++++..+++..+...+..-+.. +..++++|.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~----------~~~I~v~Tp 160 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRAC-----RLKSTCIYGGAPKGPQIRDLER----------GVEICIATP 160 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHH----------CCSEEEECH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhc-----CceEEEEECCCChHHHHHHhcC----------CCCEEEECH
Confidence 4568999999999888888877654432 5677888888877766555443 234777773
Done!