RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2956
(251 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 340 bits (873), Expect = e-113
Identities = 130/185 (70%), Positives = 156/185 (84%), Gaps = 4/185 (2%)
Query: 13 RQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQE 72
++YF++APL+ VPGRT+PVE++YTPE +RDYL++AIRTV+QIH EE GD+LLFLTG++
Sbjct: 256 QRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEE-AGDILLFLTGED 314
Query: 73 EIEEACKRIKKEIDNLGPE--AGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVV 130
EIE+A ++I E D L E G L PLY +LPP+ QQRIFE AP + G GRKVV
Sbjct: 315 EIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN-GRPGRKVV 373
Query: 131 VSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 190
+STNIAETSLTIDG+V+V+DPGF+KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP
Sbjct: 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433
Query: 191 GKCFR 195
GKCFR
Sbjct: 434 GKCFR 438
Score = 126 bits (319), Expect = 2e-33
Identities = 49/54 (90%), Positives = 54/54 (100%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 251
VV+STNIAETSLTIDG+V+V+DPGF+KQKVYNPRIRVESLLVSPISKASAQQRA
Sbjct: 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 168 bits (428), Expect = 5e-50
Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 24/176 (13%)
Query: 25 PGRTHPVEIFYTP-EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
PG T P +P E + + + +G + F+ + + ++K
Sbjct: 152 PGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRK 210
Query: 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143
+ I L + VV+T+I+E
Sbjct: 211 SG---------KRVIQLSR----KTFDTEYPKTKLTD------WDFVVTTDISEMGANFR 251
Query: 144 GVVFVIDPGFAKQKV--YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197
VIDP + V + RV P++ ASA QR GR GR + +Y+
Sbjct: 252 -AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306
Score = 87.2 bits (216), Expect = 7e-20
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKV--YNPRIRVESLLVSPISKASAQQRA 251
VV+T+I+E VIDP + V + RV P++ ASA QR
Sbjct: 237 FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRR 291
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 166 bits (422), Expect = 5e-49
Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 25 PGRTHPVE-IFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
PG T P +D + + + E G + F+ + E +++
Sbjct: 154 PGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQR 212
Query: 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143
K I L + ++ NG V++T+I+E
Sbjct: 213 AG---------KKVIQLNR--------KSYDTEYPKCKNGD--WDFVITTDISEMGANFG 253
Query: 144 GVVFVIDPGFA-KQKVYN-PRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRY 196
VID + K + RV SPI+ ASA QR GR GR P +
Sbjct: 254 -ASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRN-PNQVGDE 306
Score = 83.0 bits (205), Expect = 2e-18
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFA-KQKVYN-PRIRVESLLVSPISKASAQQRA 251
V++T+I+E VID + K + RV SPI+ ASA QR
Sbjct: 239 FVITTDISEMGANFG-ASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRR 293
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 165 bits (420), Expect = 9e-48
Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 24/176 (13%)
Query: 25 PGRTHPVEIFYTP-EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
PG T P +P E + + + +G + F+ + + ++K
Sbjct: 319 PGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRK 377
Query: 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143
+ I L + VV+T+I+E
Sbjct: 378 SGKRV---------IQLSR----KTFDTEYPKTKLTD------WDFVVTTDISEMGANFR 418
Query: 144 GVVFVIDPGFAKQKV--YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197
VIDP + V + RV P++ ASA QR GR GR + +Y+
Sbjct: 419 -AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 473
Score = 88.1 bits (218), Expect = 4e-20
Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 13/164 (7%)
Query: 91 EAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVID 150
E GE I + +T P + +P I + + T V FV
Sbjct: 305 EMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFV-- 362
Query: 151 PGFAKQKVYNPRIRVESLLVSPISKASA-QQRAGRAGRTRPGKCFRYIVVVSTNIAETSL 209
P + + L + ++ + VV+T+I+E
Sbjct: 363 PSIKAGN------DIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWD-FVVTTDISEMGA 415
Query: 210 TIDGVVFVIDPGFAKQKV--YNPRIRVESLLVSPISKASAQQRA 251
VIDP + V + RV P++ ASA QR
Sbjct: 416 NFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRR 458
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 163 bits (414), Expect = 1e-46
Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 24/175 (13%)
Query: 25 PGRTHPV-EIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
PG + P + + + + + G + F+ + E + +++
Sbjct: 374 PGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWI-TDYAGKTVWFVASVKMSNEIAQCLQR 432
Query: 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143
+ I L + ++ NG V++T+I+E
Sbjct: 433 AG---------KRVIQLNR--------KSYDTEYPKCKNGD--WDFVITTDISEMGANFG 473
Query: 144 GVVFVIDPGFA-KQKVYNP-RIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRY 196
VID + K + + RV + S I+ ASA QR GR GR Y
Sbjct: 474 ASR-VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEY 527
Score = 81.1 bits (200), Expect = 9e-18
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 164 RVESLLVSPISKA----SAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVID 219
+ L + + + G V++T+I+E VID
Sbjct: 425 EIAQCLQRAGKRVIQLNRKSYDTEYP-KCKNGD--WD-FVITTDISEMGANFGASR-VID 479
Query: 220 PGFA-KQKVYNP-RIRVESLLVSPISKASAQQRA 251
+ K + + RV + S I+ ASA QR
Sbjct: 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRR 513
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 151 bits (382), Expect = 2e-43
Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 26/178 (14%)
Query: 25 PGRTHPVEIFYTPEP--ERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIK 82
PG + + D T + FL ++
Sbjct: 141 PGTSDEFPHSNGEIEDVQTDIPSEPWNTGH--DWILADKRPTAWFLPSIRAANVMAASLR 198
Query: 83 KEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142
K + L + FE +++T+IAE +
Sbjct: 199 KA---------GKSVVVLNR--------KTFEREYPTIKQKK--PDFILATDIAEMGANL 239
Query: 143 DGVVFVIDPGFA-KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVV 199
V V+D A K + + +V IS +SA QR GR GR P +
Sbjct: 240 C-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYYY 295
Score = 81.4 bits (201), Expect = 7e-18
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFA-KQKVYNPRIRVESLLVSPISKASAQQRA 251
+++T+IAE + V V+D A K + + +V IS +SA QR
Sbjct: 226 FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 147 bits (373), Expect = 4e-42
Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 27/176 (15%)
Query: 25 PGRTHPVEIFYTP--EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIK 82
PG T +P + E + A + + E +G + F+ ++ E ++
Sbjct: 135 PGTTEAFPPSNSPIIDEETRIPDKAWNSGYEWI--TEFDGRTVWFVHSIKQGAEIGTCLQ 192
Query: 83 KEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTI 142
K K + L + FE+ + V++T+I+E
Sbjct: 193 KA---------GKKVLYLNR--------KTFESEYPKCKSEK--WDFVITTDISEMGANF 233
Query: 143 DGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR--PGKCFRY 196
VIDP K RV I+ ASA QR GR GR G + Y
Sbjct: 234 K-ADRVIDPRK-TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287
Score = 77.6 bits (191), Expect = 1e-16
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 164 RVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFVIDPGFA 223
+ + L K R K ++ V++T+I+E VIDP
Sbjct: 186 EIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRK- 243
Query: 224 KQKVYNPRIRVESLLVSPISKASAQQRA 251
K RV I+ ASA QR
Sbjct: 244 TIKPILLDGRVSMQGPIAITPASAAQRR 271
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 143 bits (362), Expect = 2e-39
Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 33/176 (18%)
Query: 24 VPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
VP Y +A ++ G L+F +++ +E ++
Sbjct: 366 VPHPNIEEVALSNTGEIPFYGKAIPIEAIR-------GGRHLIFCHSKKKCDELAAKLSG 418
Query: 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143
+ + Y P G VVV+T+ T T D
Sbjct: 419 LG---------INAVAYYR-------GLDVSVIPTI------GDVVVVATDALMTGYTGD 456
Query: 144 GVVFVIDPGFAKQKVYNPRI---RVESLLVSPISKASAQQRAGRAGRTRPGKCFRY 196
VID + + + P S QR GR GR R G
Sbjct: 457 -FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFV 511
Score = 81.6 bits (201), Expect = 6e-18
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 198 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRI---RVESLLVSPISKASAQQRA 251
VVV+T+ T T D VID + + + P S QR
Sbjct: 442 VVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRR 497
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 37/265 (13%), Positives = 73/265 (27%), Gaps = 86/265 (32%)
Query: 6 TRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVL 65
+ + L + Y + P + + A EG+
Sbjct: 117 VKTKELIKNYITARIMAKRP---------FDKKSNSALFRAV------------GEGNAQ 155
Query: 66 LFLT--GQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNG 123
L GQ ++ + EL+ LY T + I +A
Sbjct: 156 LVAIFGGQGNTDDYFE--------------ELR--DLYQTYHVLVGDLIKFSAETLSE-- 197
Query: 124 GIGRKVVVSTNIAETSL---TIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPIS------ 174
++ T + + ++ + ++ +P K Y LL PIS
Sbjct: 198 ------LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPISCPLIGV 243
Query: 175 -KASAQQRAGRAGRTRPGKCFRYI---------VVVSTNIA---------ETSLTIDGVV 215
+ + + PG+ Y+ +V + IA + V+
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 216 FVIDPGFAKQKVYNPRIRVESLLVS 240
F I G + Y P + ++
Sbjct: 304 FFI--GVRCYEAY-PNTSLPPSILE 325
Score = 35.8 bits (82), Expect = 0.014
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 68/166 (40%)
Query: 75 EEACKRIKKEI--DNLGPEAGELKCIPLYST--------LPPNLQQRIFEAAPANKPNGG 124
A I K++ +N+ A +++ IP+Y T L ++ +RI +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDC--------- 482
Query: 125 IGRKVVVSTNIAETSLT--IDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA 182
I R V + T +D F PG S + + + +
Sbjct: 483 IIRLPVKWETTTQFKATHILD---F--GPG----------------GASGLGVLTHRNKD 521
Query: 183 GRAGRTRPGKCFRYIVVVST---NIAETSLTIDGVVFVIDPGFAKQ 225
G R ++V T N + D GF KQ
Sbjct: 522 GTGVR---------VIVAGTLDINPDD------------DYGF-KQ 545
Score = 34.3 bits (78), Expect = 0.036
Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 59/148 (39%)
Query: 44 LEAAIRTV----------VQIH--------MCEEVEGDVLLFLTGQEEIEEACKRIKKEI 85
+E+ + V V M G V QE ++ +R+ K
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF-SQEALQYVVERVGK-- 1835
Query: 86 DNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVS-TNIAETSLTIDG 144
G L ++ N N ++ V + A +D
Sbjct: 1836 -----RTGWL------------VE-------IVNY-NVE-NQQYVAAGDLRA-----LDT 1864
Query: 145 VVFVIDPGFAKQKVYNPRIRVESLLVSP 172
V V++ F K + +I + L S
Sbjct: 1865 VTNVLN--FIKLQ----KIDIIELQKSL 1886
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 36.4 bits (83), Expect = 0.006
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 96 KCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK 155
+ +Y +LPP ++ +A N PN V +L+I ++F +
Sbjct: 346 ESAVIYGSLPPGT--KLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSI 403
Query: 156 QKVYNPRIRVESLLVSPISKASAQQRAGRAGR 187
+ + PI+ + A Q AGRAGR
Sbjct: 404 NEKGERELE-------PITTSQALQIAGRAGR 428
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.028
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 16/37 (43%)
Query: 82 KKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPA 118
K+ + L +A LK LY+ ++APA
Sbjct: 19 KQALKKL--QA-SLK---LYA---D-------DSAPA 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.19
Identities = 31/262 (11%), Positives = 70/262 (26%), Gaps = 85/262 (32%)
Query: 8 RQHLTRQYFDNAPLMNVPGR---------------THPVEIFYTPEPERDY--LEAAIRT 50
+ L+++ D+ ++ V+ F +Y L + I+T
Sbjct: 43 KSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 51 VVQ---------IHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLY 101
+ I + + D +F + ++++ + L P + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN----VLID 156
Query: 102 STLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLT--IDGVVFVIDPGFAKQKVY 159
G G+ V + +D +F ++
Sbjct: 157 GV-------------------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK----NCN 193
Query: 160 NPRIRVESL--LVSPISKASAQQRAGRAGRTRPGKCFRYIVVVSTNIAETSLTIDGVVFV 217
+P +E L L+ I + R+ + + + + + L
Sbjct: 194 SPETVLEMLQKLLYQIDP-NWTSRSDHSSNIK----------LRIHSIQAELRR------ 236
Query: 218 IDPGFAKQKVYNPRIRVESLLV 239
K K Y LLV
Sbjct: 237 ----LLKSKPYE-----NCLLV 249
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 31.7 bits (72), Expect = 0.20
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 68 LTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNL-------QQRIFEAAPANK 120
+G++ ++EA K + + + + L Q+ + A
Sbjct: 351 ASGRQTVDEALKDAQTNSSSNNNNNNNNNNLGIEGRSSEELLKIALQEAQKTLQQAQELA 410
Query: 121 PNGGIGRKVVVSTNIAETSL 140
GG ++ + A+ +L
Sbjct: 411 KKGGGEEQLKRALKRADRNL 430
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 29.7 bits (67), Expect = 0.81
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 22 MNVPGRTHPVEIFYTPEPERDYLEAAIR 49
++ G P+ I Y P+ R+++E A+R
Sbjct: 81 RSMSGIIQPLTI-YGPQGIREFVETALR 107
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 29.8 bits (66), Expect = 1.0
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 128 KVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 187
V+V+T++ E L + V V+ Y P S + QR GR GR
Sbjct: 421 NVLVATSVGEEGLDVPEVDLVV--------FYEP----------VPSAIRSIQRRGRTGR 462
Query: 188 TRPGKCFRYIVVVSTNIAETSL 209
PG+ I++ E
Sbjct: 463 HMPGRV--IILMAKGTRDEAYY 482
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 28.5 bits (64), Expect = 1.9
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 22 MNVPGRTHPVEIFYTPEPERDYLEAAIR 49
+ G + + Y P+ + ++E ++
Sbjct: 79 RSFQGGEDELTV-YGPKGIKAFIETSLA 105
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 28.6 bits (64), Expect = 2.0
Identities = 3/85 (3%), Positives = 20/85 (23%), Gaps = 4/85 (4%)
Query: 4 FATRRQHLTRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGD 63
+ ++ + + + + + V + +
Sbjct: 348 NPSNENVNVKELSEKSSEATTKILGQAITQVKNAKAVVPTVSDVWGGDVHTAIINALTE- 406
Query: 64 VLLFLTGQEEIEEACKRIKKEIDNL 88
++++ K + + +L
Sbjct: 407 ---SAAENVDVDQKVKSTQDVLKSL 428
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 27.9 bits (63), Expect = 3.2
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 69 TGQEEIEEACKRIKKEIDNL 88
T + I+ +R++K + +
Sbjct: 368 TDLDTIKRGMERLEKFLHGI 387
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 27.7 bits (61), Expect = 3.3
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 16 FDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEG------DVLL--F 67
P N PG + R+Y + V+ M E++ +V+ F
Sbjct: 203 LVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHF 262
Query: 68 LTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYST 103
+ EI C+ +I + + + ++
Sbjct: 263 YLKRVEIMAQCEEWIADIQQYSSDKRVGRTMSHHAA 298
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 28.2 bits (62), Expect = 3.3
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 66 LFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPN 107
+F+ ++ + D+ A + +P + +
Sbjct: 15 VFIVPPXILQAVVSILTTRXDDXDSSAASIPMVPGWVLKQVS 56
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 27.8 bits (63), Expect = 3.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 69 TGQEEIEEACKRIKKEIDNL 88
T E++EEA R+++ +
Sbjct: 367 TAYEKLEEAMDRMERVLKER 386
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 27.9 bits (63), Expect = 3.4
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 19/64 (29%)
Query: 30 PVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLG 89
P FY +P +D R F +EE+ A +R+ + +++
Sbjct: 332 PASAFYLEDPPKDL----FR------FA---------FCKTEEELHLALERLGRVVNSPR 372
Query: 90 PEAG 93
G
Sbjct: 373 EAEG 376
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 27.9 bits (63), Expect = 3.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 67 FLTGQEEIEEACKRIKK 83
FL E +EEA R +K
Sbjct: 382 FLPPIEILEEAMDRFEK 398
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 28.0 bits (63), Expect = 3.6
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 67 FLTGQEEIEEACKRIKK 83
E EA +RIK
Sbjct: 392 TTRPVEVYREAVERIKA 408
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 28.0 bits (63), Expect = 3.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 67 FLTGQEEIEEACKRIKK 83
+ + EAC RI++
Sbjct: 403 ITVPEVMMLEACSRIQE 419
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 27.5 bits (61), Expect = 4.8
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 23 NVPGRTHPVEIFYTPEPERDYLEAAIRT 50
P+EI Y P RD++ +
Sbjct: 81 GSMVSKQPIEI-YGPVGLRDFIWRTMEL 107
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG;
1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Length = 330
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 103 TLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAET----SLTIDGVVFVIDP 151
P I EA R + + + + I+G F I
Sbjct: 226 VGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISS 278
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 27.4 bits (61), Expect = 5.8
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEA 77
+EAA+R + ++ + + G + I+EA
Sbjct: 302 VMEAALRFAYEAVTGKKPDSWDFKAVRGLDGIKEA 336
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 27.2 bits (61), Expect = 6.1
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 69 TGQEEIEEACKRIKKEIDNL 88
E A +RI ++
Sbjct: 386 QDHEAAVAAARRIVTLVERY 405
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 27.1 bits (61), Expect = 6.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 69 TGQEEIEEACKRIKKEIDN 87
T E + EA RI+ +++
Sbjct: 370 TSIERLTEALDRIEDFLNS 388
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 27.0 bits (60), Expect = 7.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 43 YLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEA 77
+EAA+R+ E+E + G I+EA
Sbjct: 423 VMEAALRSAKDFAENAELEDIEYKQVRGLNGIKEA 457
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 26.7 bits (60), Expect = 7.0
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 69 TGQEEIEEACKRIKK 83
T +E + +A +R +
Sbjct: 366 TSEENLRKALERFAR 380
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A
{Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B*
2eho_A*
Length = 223
Score = 26.6 bits (58), Expect = 7.1
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 2 QIFATRRQHLTRQYFDNAPLMNVPGRTHPVEIF-YTPEPERDYLEAAIRTVVQIHMCEEV 60
FA T Y N L ++P V++F P+P+ D + V + + E
Sbjct: 127 LAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLD-------SYVFLRVRERQ 179
Query: 61 EGDVL 65
E ++
Sbjct: 180 ENILV 184
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 26.4 bits (58), Expect = 9.2
Identities = 2/17 (11%), Positives = 8/17 (47%)
Query: 67 FLTGQEEIEEACKRIKK 83
+ Q++ ++ +K
Sbjct: 404 LIKTQDDFDQLMYYLKD 420
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.391
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,948,993
Number of extensions: 248443
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 61
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)