RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2956
(251 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 108 bits (272), Expect = 6e-29
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 26/176 (14%)
Query: 26 GRTHPVEIFYTP--EPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
G + + + D T + FL ++K
Sbjct: 1 GTSDEFPHSNGEIEDVQTDIPSEPWNTGHD--WILADKRPTAWFLPSIRAANVMAASLRK 58
Query: 84 EIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTID 143
+ L I + +++T+IAE +
Sbjct: 59 ---------AGKSVVVLNRKTFEREYPTIKQ----------KKPDFILATDIAEMGANLC 99
Query: 144 GVVFVIDPGFA-KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYIV 198
V V+D A K + + +V IS +SA QR GR GR P +
Sbjct: 100 -VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY 153
Score = 64.6 bits (157), Expect = 7e-13
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 192 KCFRYIVVVSTNIAETSLTIDGVVFVIDPGFA-KQKVYNPRIRVESLLVSPISKASAQQR 250
K + +++T+IAE + V V+D A K + + +V IS +SA QR
Sbjct: 79 KQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQR 137
Query: 251 A 251
Sbjct: 138 R 138
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 83.8 bits (206), Expect = 1e-19
Identities = 33/175 (18%), Positives = 55/175 (31%), Gaps = 22/175 (12%)
Query: 25 PGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKE 84
PG P P + + + +G + F+ + + ++K
Sbjct: 142 PGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKN 201
Query: 85 IDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVVSTNIAETSLTIDG 144
K I L + + VV+T+I+E
Sbjct: 202 ---------GKKVIQLSRKTFDSEYIKTRT----------NDWDFVVTTDISEMGANFK- 241
Query: 145 VVFVIDPGFAKQKV--YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRYI 197
VIDP + V + RV P++ +SA QR GR GR + +YI
Sbjct: 242 AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Score = 45.7 bits (107), Expect = 2e-06
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 192 KCFRYIVVVSTNIAETSLTIDGVVFVIDPGFAKQKV--YNPRIRVESLLVSPISKASAQQ 249
+ + VV+T+I+E VIDP + V + RV P++ +SA Q
Sbjct: 221 RTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQ 279
Query: 250 RA 251
R
Sbjct: 280 RR 281
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 39.5 bits (91), Expect = 2e-04
Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 12 TRQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQ 71
+++ F + + + P+ D L + +++ + + +++F +
Sbjct: 116 SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKL----KEIIREQLQRKQNSKIIVFTNYR 171
Query: 72 EEIEEACKRIKKEIDNLGPEAGELKCIPLYSTLPPNLQQRIFEAAPANKPNGGIGRKVVV 131
E ++ + K+ G+ L Q+ I + + N V+V
Sbjct: 172 ETAKKIVNELVKDGIKAKRFVGQASK-ENDRGLSQREQKLILDEFARGEFN------VLV 224
Query: 132 STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 191
+T++ E L + V V+ Y P S + QR GR GR PG
Sbjct: 225 ATSVGEEGLDVPEVDLVV--------FYEP----------VPSAIRSIQRRGRTGRHMPG 266
Query: 192 KCFRYI 197
+ +
Sbjct: 267 RVIILM 272
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 31.8 bits (72), Expect = 0.063
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 15/64 (23%)
Query: 128 KVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 187
V+ N T + + + P S QR GR GR
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPTFT-------IETTTL--------PQDAVSRTQRRGRTGR 142
Query: 188 TRPG 191
+PG
Sbjct: 143 GKPG 146
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Length = 394
Score = 30.2 bits (66), Expect = 0.22
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 67 FLTGQEEIEEACKRIKKEIDNL 88
I+E+ +R+ K + +L
Sbjct: 372 LAAPSSVIQESLERLNKALKDL 393
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 28.9 bits (64), Expect = 0.28
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 172 PISKASAQQRAGRAGRTRPGKC 193
P S QR GR GR +PG
Sbjct: 109 PQDAVSRTQRRGRTGRGKPGIY 130
>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage
T7 [TaxId: 10760]}
Length = 494
Score = 29.7 bits (65), Expect = 0.35
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 8/60 (13%)
Query: 41 RDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEIDNLGPEAGELKCIPL 100
+ + + +H D + EEI + +E + +C L
Sbjct: 429 KHGWDGDFAYMAWVH-------DEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRC-LL 480
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 28.7 bits (63), Expect = 0.52
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 147 FVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK-CFRYIVVVSTN 203
++ + + P V ++ S QR GR R GK ++S
Sbjct: 141 AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus
thermophilus [TaxId: 274]}
Length = 368
Score = 28.2 bits (61), Expect = 0.89
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 19/54 (35%)
Query: 30 PVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKK 83
P FY +P +D R F +EE+ A +R+ +
Sbjct: 332 PASAFYLEDPPKDL----FR---------------FAFCKTEEELHLALERLGR 366
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 28.2 bits (61), Expect = 1.1
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 67 FLTGQEEIEEACKRIKK 83
F + + A +R+++
Sbjct: 365 FAKKESTLLAAAERLRQ 381
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 27.9 bits (60), Expect = 1.4
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 67 FLTGQEEIEEACKRIKK 83
E EA +RIK
Sbjct: 389 TTRPVEVYREAVERIKA 405
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
{Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 27.8 bits (60), Expect = 1.5
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 67 FLTGQEEIEEACKRIKK 83
F E +++A + ++K
Sbjct: 397 FFKKDENLQKAAEILRK 413
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 27.7 bits (60), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 67 FLTGQEEIEEACKRIKKEIDN 87
F T E + EA RI+ +++
Sbjct: 355 FATSIERLTEALDRIEDFLNS 375
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 27.4 bits (60), Expect = 1.9
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 67 FLTGQEEIEEACKRIKKEIDNL 88
+ T + I+ +R++K + +
Sbjct: 366 YATDLDTIKRGMERLEKFLHGI 387
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I
{Human (Homo sapiens) [TaxId: 9606]}
Length = 418
Score = 27.0 bits (58), Expect = 2.5
Identities = 2/17 (11%), Positives = 10/17 (58%)
Query: 67 FLTGQEEIEEACKRIKK 83
F+ + ++ ++++K
Sbjct: 398 FVKDEATLQAMDEKLRK 414
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 27.0 bits (58), Expect = 2.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 72 EEIEEACKRIKKEIDNLGPE 91
E+I E KR+++ + G E
Sbjct: 397 EKIVEGIKRLREVVLEYGKE 416
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 26.7 bits (57), Expect = 3.1
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 67 FLTGQEEIEEACKRIKKEIDNL 88
+ ++E+ + I +
Sbjct: 339 AGCPRSKLEKGVAGLINAIRAV 360
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga
maritima [TaxId: 2336]}
Length = 209
Score = 25.9 bits (56), Expect = 4.4
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 140 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVS 171
L ++G V DP P + + + S
Sbjct: 14 LEMEGKTIVTDPFDESVGYPIPNVTADVVTES 45
Score = 25.9 bits (56), Expect = 4.4
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 209 LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVS 240
L ++G V DP P + + + S
Sbjct: 14 LEMEGKTIVTDPFDESVGYPIPNVTADVVTES 45
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 26.1 bits (57), Expect = 4.4
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 52 VQIHMCEEVEGDVLLFLTGQEEIEEACKRIKKEID 86
++I C E + L + ++EA +KEI+
Sbjct: 210 LEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEIN 244
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 26.0 bits (56), Expect = 4.6
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 71 QEEIEEACKRIKKEIDNLGPEAGELKCIP-------LYSTLPPNLQ-QR 111
+E E+ + I+ E++ EA E +P +++ P +L Q
Sbjct: 307 EEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQE 355
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 25.7 bits (55), Expect = 6.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 67 FLTGQEEIEEACKRIKK 83
FL E +EEA R +K
Sbjct: 374 FLPPIEILEEAMDRFEK 390
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 25.4 bits (55), Expect = 6.7
Identities = 3/34 (8%), Positives = 17/34 (50%)
Query: 135 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL 168
+ E + + G+ +++ +++ + + + +L
Sbjct: 145 LDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTL 178
Score = 25.4 bits (55), Expect = 6.7
Identities = 3/34 (8%), Positives = 17/34 (50%)
Query: 204 IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL 237
+ E + + G+ +++ +++ + + + +L
Sbjct: 145 LDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTL 178
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 25.5 bits (55), Expect = 7.4
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 27 RTHPVEIFYTPEPERDY-LEAAIRTVVQIHMCEEVEGDVL------------LFLTGQEE 73
R VEIF E +E + +I + + G+VL F+T +E+
Sbjct: 195 RGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFVTREEK 254
Query: 74 IEEACKRIKKEID 86
+ A + I++E++
Sbjct: 255 MRLAIQNIEQELE 267
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 25.3 bits (54), Expect = 7.4
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 63 DVLLFLTGQEEIEEACKRIKKEIDNLG 89
D + + ++ E ++ ++G
Sbjct: 167 DKVKIIPANRDVNEVYNDVENLFKSMG 193
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 25.1 bits (54), Expect = 9.1
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 67 FLTGQEEIEEACKRIKK 83
+ T +E + +A +R +
Sbjct: 364 YATSEENLRKALERFAR 380
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 25.2 bits (54), Expect = 9.4
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 71 QEEIEEACKRIKKEIDNLGPEAGELKCIP-------------LYSTLPPNLQ-QR 111
+EE + + + EA + + +Y +P +L+ QR
Sbjct: 350 EEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQR 404
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 25.2 bits (54), Expect = 9.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 67 FLTGQEEIEEACKRIKK 83
+ T E++EEA R+++
Sbjct: 364 YATAYEKLEEAMDRMER 380
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.391
Gapped
Lambda K H
0.267 0.0381 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 948,453
Number of extensions: 45865
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 37
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)