BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2958
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 1 MQRVCKCHGMSGSCSVKVCWKRLPSFQQVGDILASRYEGAYFVKQVGDILASRYEGAYFX 60
M+R CKCHG+SGSCS++ CW +L F+ +G+ L +++ A ++ + S
Sbjct: 155 MKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKRKMRS-------- 206
Query: 61 XXXXXXXXXXXXXLRSAVRDA-KQPNRTELVYMEESPDYCQRN 102
R A+ DA +EL+++E+SPDYC +N
Sbjct: 207 --------GNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKN 241
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 ILASRYEGAYFVKQVGDILASRYEGA 57
++ R E Y ++++GD+L +R++GA
Sbjct: 129 LMKRRQESGYLIEEIGDVLLARFDGA 154
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 ILASRYEGAYFVKQVGDILASRYEGA 57
++ R E Y ++++GD+L +R++GA
Sbjct: 87 LMKRRQESGYLIEEIGDVLLARFDGA 112
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 ILASRYEGAYFVKQVGDILASRYEGA 57
++ R E Y ++++GD+L +R++GA
Sbjct: 242 LMKRRQESGYLIEEIGDVLLARFDGA 267
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 32 ILASRYEGAYFVKQVGDILASRYEGA 57
++ R E Y ++++GD+L +R++GA
Sbjct: 89 LMKRRQESGYLIEEIGDVLLARFDGA 114
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 95 SPDYCQRNETGRGRSDLFPEPSSSNRPPNFLL 126
+P +CQ E RSD P P + R P +++
Sbjct: 34 TPSWCQSTEASPKRSDGTPFPWNKIRLPEYVI 65
>pdb|2R9I|A Chain A, Crystal Structure Of Putative Phage Capsid Protein Domain
From Corynebacterium Diphtheriae
Length = 141
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 31 DILASRYEGAYFVKQVGDILASRYEGAYF 59
D ASR G +FVK GD L ++ GA+
Sbjct: 83 DSAASRSLGEHFVKAAGDRLKNQAAGAHI 111
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 16 VKVCWKRLPSFQQVGDILASRYEGAYFV 43
VK W +L +Q GDI RYEG Y +
Sbjct: 110 VKELWTKL---EQKGDIYLGRYEGWYSI 134
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 16 VKVCWKRLPSFQQVGDILASRYEGAYFV 43
VK W +L +Q GDI RYEG Y +
Sbjct: 110 VKELWTKL---EQKGDIYLGRYEGWYSI 134
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 16 VKVCWKRLPSFQQVGDILASRYEGAYFV 43
VK W +L +Q GDI RYEG Y +
Sbjct: 110 VKELWTKL---EQKGDIYLGRYEGWYSI 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,461,375
Number of Sequences: 62578
Number of extensions: 106661
Number of successful extensions: 193
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 18
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)