Query psy2958
Match_columns 129
No_of_seqs 144 out of 909
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 21:55:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 100.0 2.2E-37 4.7E-42 256.8 7.2 100 1-118 205-309 (356)
2 smart00097 WNT1 found in Wnt-1 100.0 3.3E-35 7.2E-40 240.8 7.5 102 1-123 156-262 (305)
3 PF00110 wnt: wnt family; Int 100.0 9E-34 2E-38 232.5 2.6 95 1-115 160-260 (310)
4 PF13085 Fer2_3: 2Fe-2S iron-s 38.4 13 0.00027 26.5 0.4 19 8-26 54-79 (110)
5 PF01712 dNK: Deoxynucleoside 31.7 6.1 0.00013 28.7 -2.2 25 87-111 69-93 (146)
6 KOG2052|consensus 25.0 41 0.00089 30.1 1.4 28 16-43 479-506 (513)
7 PF00537 Toxin_3: Scorpion tox 20.7 13 0.00028 23.2 -1.9 18 3-20 23-46 (54)
8 KOG4235|consensus 19.7 18 0.0004 29.1 -1.6 26 84-109 152-177 (244)
9 cd09243 BRO1_Brox_like Protein 18.3 91 0.002 26.4 2.1 16 85-100 322-337 (353)
10 COG5261 IQG1 Protein involved 17.3 75 0.0016 30.6 1.5 20 17-36 174-193 (1054)
No 1
>KOG3913|consensus
Probab=100.00 E-value=2.2e-37 Score=256.84 Aligned_cols=100 Identities=47% Similarity=0.898 Sum_probs=84.6
Q ss_pred CceeeeeccccCcccchhhcccCCChHHHHHHHHHhhcccceeeeecchhhccccccccceecccccccccccccccccc
Q psy2958 1 MQRVCKCHGMSGSCSVKVCWKRLPSFQQVGDILASRYEGAYFVKQVGDILASRYEGAYFVKVVNNQRKRNVKRLRSAVRD 80 (129)
Q Consensus 1 m~~~CKCHGvSGSC~~KTCW~~lp~Fr~IG~~Lk~kY~~A~~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~p~~~~ 80 (129)
|+++||||||||||++||||++||+|++||+.||+|||+|++|...+. ..+....+.+.+..
T Consensus 205 m~~~CKCHGvSGSC~~KTCW~~lp~Fr~vG~~Lk~KYd~A~~V~~~~~------------------~~~~~~~~~~~~~~ 266 (356)
T KOG3913|consen 205 MRRECKCHGVSGSCTVKTCWKQLPDFREVGDYLKEKYDGAIKVTVNNR------------------GRRSAPALRPEKPR 266 (356)
T ss_pred hhhcccccCccccchhhhHHhhCccHHHHHHHHHHHhhhheEEeeccC------------------Cccccccccccccc
Confidence 789999999999999999999999999999999999999999988531 11111225566677
Q ss_pred CCCCCCCCeEEecCCCCCcccCCC-----CCCcccCCCCCCCC
Q psy2958 81 AKQPNRTELVYMEESPDYCQRNET-----GRGRSDLFPEPSSS 118 (129)
Q Consensus 81 ~~~p~~~dLVYle~SPdYC~~n~~-----~~~~~~~~~~~~~~ 118 (129)
+++|...||||||+|||||++|+. +.||.|+.+.+.+.
T Consensus 267 ~~~~~~~dLVYle~SPdfC~~~~~~Gs~GT~GR~Cn~ts~g~d 309 (356)
T KOG3913|consen 267 FKPPTETDLVYLEDSPDYCERNKKTGSLGTQGRECNKTSRGSD 309 (356)
T ss_pred cCCCCCCceEEecCCChhhccCccCCCCCCCCcccCCCCCCCC
Confidence 788999999999999999999998 77999998776553
No 2
>smart00097 WNT1 found in Wnt-1.
Probab=100.00 E-value=3.3e-35 Score=240.75 Aligned_cols=102 Identities=40% Similarity=0.738 Sum_probs=82.0
Q ss_pred CceeeeeccccCcccchhhcccCCChHHHHHHHHHhhcccceeeeecchhhccccccccceecccccccccccccccccc
Q psy2958 1 MQRVCKCHGMSGSCSVKVCWKRLPSFQQVGDILASRYEGAYFVKQVGDILASRYEGAYFVKVVNNQRKRNVKRLRSAVRD 80 (129)
Q Consensus 1 m~~~CKCHGvSGSC~~KTCW~~lp~Fr~IG~~Lk~kY~~A~~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~p~~~~ 80 (129)
|+++||||||||||++||||++||+|++||+.||+||++|++|...+ .+....+.|.+..
T Consensus 156 ~~~~CkCHGvSGSC~~kTCw~~l~~Fr~Ig~~Lk~kY~~A~~V~~~~--------------------~~~~~~l~~~~~~ 215 (305)
T smart00097 156 MKRECKCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKYDGASEVEVDK--------------------RGTNKAPVPKNST 215 (305)
T ss_pred HHHhccccCccCCccccchHhhCCCHHHHHHHHHHHhccceEeeecc--------------------cccccccccCCcc
Confidence 67899999999999999999999999999999999999999997642 1211224455555
Q ss_pred CCCCCCCCeEEecCCCCCcccCCCC-----CCcccCCCCCCCCCCCCc
Q psy2958 81 AKQPNRTELVYMEESPDYCQRNETG-----RGRSDLFPEPSSSNRPPN 123 (129)
Q Consensus 81 ~~~p~~~dLVYle~SPdYC~~n~~~-----~~~~~~~~~~~~~~~~~~ 123 (129)
.++|+.+||||||+|||||++|+.. .||+|+.+.+. .+.|-.
T Consensus 216 ~~~~~~~dLVYle~SPdyC~~n~~~G~~GT~GR~Cn~~s~~-~~~C~~ 262 (305)
T smart00097 216 FKPPTETDLVYLESSPDFCEKNPKTGSLGTQGRQCNKTSKG-LDGCDL 262 (305)
T ss_pred CCCCCCCCeEEeCCCCcccccCCCcCCCCCCCCccCCCCCC-CCChhh
Confidence 5778999999999999999999884 69999866432 344443
No 3
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.98 E-value=9e-34 Score=232.50 Aligned_cols=95 Identities=42% Similarity=0.863 Sum_probs=55.0
Q ss_pred CceeeeeccccCcccchhhcccCCChHHHHHHHHHhhcccceeeeecchhhccccccccceecccccccccccccc-ccc
Q psy2958 1 MQRVCKCHGMSGSCSVKVCWKRLPSFQQVGDILASRYEGAYFVKQVGDILASRYEGAYFVKVVNNQRKRNVKRLRS-AVR 79 (129)
Q Consensus 1 m~~~CKCHGvSGSC~~KTCW~~lp~Fr~IG~~Lk~kY~~A~~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~p-~~~ 79 (129)
|+++||||||||||++||||++||+|++||+.||+||++|++|...+. +......+ ...
T Consensus 160 ~~~~CkCHGvSGSC~~ktCw~~l~~f~~Ig~~Lk~kY~~A~~v~~~~~--------------------~~~~~~~~~~~~ 219 (310)
T PF00110_consen 160 MKKKCKCHGVSGSCTVKTCWRSLPPFREIGDYLKEKYDSAVKVKPNNN--------------------GNRSKPSPRKNK 219 (310)
T ss_dssp -EEEEEE-SGGG-TTSEEEEEE---HHHHHHHHHHHHHT-EE-------------------------------------H
T ss_pred ccceEccccccCCCcceEEEEcCCcHHHHHHHHHHHhhcccccccccc--------------------cccccccccccc
Confidence 689999999999999999999999999999999999999999987531 11111111 122
Q ss_pred cCCCCCCCCeEEecCCCCCcccCCC-----CCCcccCCCCC
Q psy2958 80 DAKQPNRTELVYMEESPDYCQRNET-----GRGRSDLFPEP 115 (129)
Q Consensus 80 ~~~~p~~~dLVYle~SPdYC~~n~~-----~~~~~~~~~~~ 115 (129)
..+++..+||||+|+|||||++|+. +.||.|..+.+
T Consensus 220 ~~~~~~~~~LvY~~~SPdyC~~d~~~G~~GT~GR~C~~~~~ 260 (310)
T PF00110_consen 220 RFKPPTSTDLVYLEKSPDYCEPDPSTGSLGTRGRECNKTSS 260 (310)
T ss_dssp HHHTS-SSS-EE-S----TTSEETTTTEE-STT-EE----T
T ss_pred ccCCCCCceEEEECCCCcceeeccccccCcccccccCCCCC
Confidence 3457889999999999999999987 67999987754
No 4
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=38.44 E-value=13 Score=26.52 Aligned_cols=19 Identities=26% Similarity=0.894 Sum_probs=14.7
Q ss_pred ccccCcccchh-------hcccCCCh
Q psy2958 8 HGMSGSCSVKV-------CWKRLPSF 26 (129)
Q Consensus 8 HGvSGSC~~KT-------CW~~lp~F 26 (129)
||+-|||+|+. |...+.++
T Consensus 54 ~giCGsCam~ING~~~LAC~t~v~~~ 79 (110)
T PF13085_consen 54 SGICGSCAMRINGRPRLACKTQVDDL 79 (110)
T ss_dssp SSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred CCCCCCCEEEECCceecceeeEchhc
Confidence 89999999985 77666553
No 5
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=31.66 E-value=6.1 Score=28.66 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=19.8
Q ss_pred CCeEEecCCCCCcccCCCCCCcccC
Q psy2958 87 TELVYMEESPDYCQRNETGRGRSDL 111 (129)
Q Consensus 87 ~dLVYle~SPdYC~~n~~~~~~~~~ 111 (129)
+=+|||+-||+-|......|||..-
T Consensus 69 dl~IYL~~~~e~~~~RI~kRgR~~E 93 (146)
T PF01712_consen 69 DLIIYLDASPETCLERIKKRGREEE 93 (146)
T ss_dssp SEEEEEE--HHHHHHHHHHCTTGGG
T ss_pred CeEEEEeCCHHHHHHHHHHhCCchh
Confidence 3469999999999999999999864
No 6
>KOG2052|consensus
Probab=24.95 E-value=41 Score=30.05 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.9
Q ss_pred chhhcccCCChHHHHHHHHHhhccccee
Q psy2958 16 VKVCWKRLPSFQQVGDILASRYEGAYFV 43 (129)
Q Consensus 16 ~KTCW~~lp~Fr~IG~~Lk~kY~~A~~V 43 (129)
||+||.+-|.+|-.+-.+|+....-.++
T Consensus 479 MkeCW~~Np~aRltALriKKtl~~l~~~ 506 (513)
T KOG2052|consen 479 MKECWYANPAARLTALRIKKTLAKLSNS 506 (513)
T ss_pred HHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence 7899999999999988888877765543
No 7
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission. The complete covalent structure of the toxins has been deduced: it comprises around 66 amino acid residues and is cross- linked by 4 disulphide bridges [, ]. An anti-epilepsy peptide isolated from scorpion venom [] shows similarity to both scorpion neurotoxins and anti-insect toxins. This family also contains a group of proteinase inhibitors from Arabidopsis thaliana and Brassica spp., which belong to MEROPS inhibitor family I18, clan I-. The Brassica napus (Oil seed rape) and Sinapis alba (White mustard) inhibitors [, ], inhibit the catalytic activity of bovine beta-trypsin and bovine alpha-chymotrypsin, which belong to MEROPS peptidase family S1 (IPR001254 from INTERPRO) [].; GO: 0008200 ion channel inhibitor activity, 0005576 extracellular region; PDB: 2LI7_A 2LJM_A 2B3C_A 1B3C_A 1WWN_A 1JZA_B 1JZB_A 4AEI_A 1AHO_A 1PTX_A ....
Probab=20.72 E-value=13 Score=23.19 Aligned_cols=18 Identities=44% Similarity=0.962 Sum_probs=14.4
Q ss_pred eeeeeccc-cCcccchh-----hc
Q psy2958 3 RVCKCHGM-SGSCSVKV-----CW 20 (129)
Q Consensus 3 ~~CKCHGv-SGSC~~KT-----CW 20 (129)
..||=||+ ||.|-... ||
T Consensus 23 ~~Ck~~ga~~GyC~~~~~~g~aCw 46 (54)
T PF00537_consen 23 KECKKKGAKSGYCYWWGPYGLACW 46 (54)
T ss_dssp HHHHHTTSSEEEEECTETTEEEEE
T ss_pred HHHHhcCCCccEeeCCCCCCCeEE
Confidence 35777887 78999988 88
No 8
>KOG4235|consensus
Probab=19.67 E-value=18 Score=29.09 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCCCCeEEecCCCCCcccCCCCCCcc
Q psy2958 84 PNRTELVYMEESPDYCQRNETGRGRS 109 (129)
Q Consensus 84 p~~~dLVYle~SPdYC~~n~~~~~~~ 109 (129)
...+-+|||..||+-|.+-...|+|+
T Consensus 152 v~~dgiIYLrasPetc~~Ri~~R~R~ 177 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRIYLRARE 177 (244)
T ss_pred cccceEEEeecChHHHHHHHHHHhhh
Confidence 34566799999999998877777765
No 9
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=18.30 E-value=91 Score=26.39 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=12.8
Q ss_pred CCCCeEEecCCCCCcc
Q psy2958 85 NRTELVYMEESPDYCQ 100 (129)
Q Consensus 85 ~~~dLVYle~SPdYC~ 100 (129)
.++|+||+|.-|+--.
T Consensus 322 KDNdfIYh~~VP~e~p 337 (353)
T cd09243 322 RENGFIYHQKVPDEVP 337 (353)
T ss_pred hhhceeccccCCCCCC
Confidence 4789999999996443
No 10
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=17.26 E-value=75 Score=30.61 Aligned_cols=20 Identities=30% Similarity=0.815 Sum_probs=18.0
Q ss_pred hhhcccCCChHHHHHHHHHh
Q psy2958 17 KVCWKRLPSFQQVGDILASR 36 (129)
Q Consensus 17 KTCW~~lp~Fr~IG~~Lk~k 36 (129)
+.=|.+||+|+.+|..++.+
T Consensus 174 ~~~~~~ip~Fk~lg~~~~~~ 193 (1054)
T COG5261 174 KKAWPRIPDFKSLGTNINTA 193 (1054)
T ss_pred HHhhhcCCChhhHhHHHhhc
Confidence 45699999999999999988
Done!