Query psy2958
Match_columns 129
No_of_seqs 144 out of 909
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:56:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 6.3E-37 2.2E-41 250.7 4.1 100 1-116 155-260 (316)
2 3tvj_I Protease inhibitor SGPI 49.7 4 0.00014 23.2 0.3 16 4-19 19-36 (38)
3 2lfw_B NEPR anti sigma factor; 36.6 11 0.00038 23.6 0.8 18 27-44 26-43 (62)
4 1gl0_I Protease inhibitor LCMI 28.4 14 0.00049 20.5 0.3 16 4-20 16-33 (35)
5 4a1x_C CP5-46-A peptide; hydro 25.3 33 0.0011 17.4 1.3 11 88-98 5-15 (26)
6 1hvw_A Omega-ACTX-HV1A, omega- 24.5 16 0.00056 18.9 0.1 10 10-19 15-24 (26)
7 3fgh_A Transcription factor A, 21.9 28 0.00094 20.7 0.8 23 19-41 36-63 (67)
8 3nm9_A HMG-D, high mobility gr 21.1 24 0.00083 21.3 0.4 24 18-41 40-66 (73)
9 3t0y_B NEPR; sigma factor, ant 19.6 32 0.0011 21.8 0.7 17 27-43 32-48 (68)
10 4a3n_A Transcription factor SO 19.0 39 0.0013 19.9 1.0 22 19-40 40-66 (71)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=6.3e-37 Score=250.74 Aligned_cols=100 Identities=33% Similarity=0.681 Sum_probs=77.5
Q ss_pred CceeeeeccccCcccchhhcccCCChHHHHHHHHHhhcccceeeeecchhhccccccccceecccccccc-ccccccccc
Q psy2958 1 MQRVCKCHGMSGSCSVKVCWKRLPSFQQVGDILASRYEGAYFVKQVGDILASRYEGAYFVKVVNNQRKRN-VKRLRSAVR 79 (129)
Q Consensus 1 m~~~CKCHGvSGSC~~KTCW~~lp~Fr~IG~~Lk~kY~~A~~V~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~p~~~ 79 (129)
|+++||||||||||++||||++||+|++||+.||+|||+|++|.+.+..+ ..++ ...+.+...
T Consensus 155 m~~~CKCHGvSGSCt~KTCW~~lp~Fr~VG~~LK~kyd~A~~V~~~~~~~----------------~~~~~~~~~~~~~~ 218 (316)
T 4f0a_B 155 MKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKRKM----------------RSGNSADNRGAIAD 218 (316)
T ss_dssp CEEEEEECSGGGCTTSEEEEEECCCHHHHHHHHHHHHHTCEECCC-----------------------------CHHHHH
T ss_pred CeeeeecCCccccccceehcccCCCHHHHHHHHHHHhhhheEeeeccccc----------------cccccccccccccc
Confidence 78999999999999999999999999999999999999999997743100 0011 011122223
Q ss_pred cCCCCCCCCeEEecCCCCCcccCCC-----CCCcccCCCCCC
Q psy2958 80 DAKQPNRTELVYMEESPDYCQRNET-----GRGRSDLFPEPS 116 (129)
Q Consensus 80 ~~~~p~~~dLVYle~SPdYC~~n~~-----~~~~~~~~~~~~ 116 (129)
.+++|+.+||||||+|||||++|++ +.||.|+.+...
T Consensus 219 ~~k~p~~~dLVYle~SPdfC~~n~~~Gs~GT~GR~Cn~tS~g 260 (316)
T 4f0a_B 219 AFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKN 260 (316)
T ss_dssp HHHTSCSSSCEECSCCCCTTSEETTTTEECSTTCEECCCCTT
T ss_pred ccCCCCCCCeEEeCCCCcccccCCCCCCCCCCCcccCCCCCC
Confidence 3467889999999999999999998 789999987653
No 2
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=49.70 E-value=4 Score=23.24 Aligned_cols=16 Identities=38% Similarity=1.026 Sum_probs=14.0
Q ss_pred eeeec--cccCcccchhh
Q psy2958 4 VCKCH--GMSGSCSVKVC 19 (129)
Q Consensus 4 ~CKCH--GvSGSC~~KTC 19 (129)
.|.|- |.+.+|+.|.|
T Consensus 19 tC~C~~dG~~a~CT~k~C 36 (38)
T 3tvj_I 19 TCRCGSDGKSAVCTKLWC 36 (38)
T ss_dssp EEEECTTSSCEEEECCEE
T ss_pred eeECCCCCceeEeecccC
Confidence 58886 99999999987
No 3
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=36.62 E-value=11 Score=23.57 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcccceee
Q psy2958 27 QQVGDILASRYEGAYFVK 44 (129)
Q Consensus 27 r~IG~~Lk~kY~~A~~V~ 44 (129)
.+||..|+..|+.++.=.
T Consensus 26 ~~Ig~~LR~~Yd~vv~E~ 43 (62)
T 2lfw_B 26 RDMGAALRSAYQKTIEEQ 43 (62)
T ss_dssp TTHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 689999999999887543
No 4
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=28.44 E-value=14 Score=20.53 Aligned_cols=16 Identities=31% Similarity=0.964 Sum_probs=12.2
Q ss_pred eeee--ccccCcccchhhc
Q psy2958 4 VCKC--HGMSGSCSVKVCW 20 (129)
Q Consensus 4 ~CKC--HGvSGSC~~KTCW 20 (129)
.|.| +|+ ++|++|.|-
T Consensus 16 ~C~C~~~G~-~~CTlk~C~ 33 (35)
T 1gl0_I 16 TCTCTPTGV-WGCTLMGCQ 33 (35)
T ss_dssp EEEECTTSC-EEEECCCCC
T ss_pred ccCCCCCCe-EEEEeeccc
Confidence 4666 676 999999884
No 5
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=25.26 E-value=33 Score=17.41 Aligned_cols=11 Identities=45% Similarity=1.035 Sum_probs=9.7
Q ss_pred CeEEecCCCCC
Q psy2958 88 ELVYMEESPDY 98 (129)
Q Consensus 88 dLVYle~SPdY 98 (129)
.||||-+-|.|
T Consensus 5 rlvylldgpgy 15 (26)
T 4a1x_C 5 RLVYLLDGPGY 15 (26)
T ss_pred eEEEEecCCCC
Confidence 59999999987
No 6
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=24.54 E-value=16 Score=18.92 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=8.1
Q ss_pred ccCcccchhh
Q psy2958 10 MSGSCSVKVC 19 (129)
Q Consensus 10 vSGSC~~KTC 19 (129)
-||||+-+.|
T Consensus 15 CSGsCt~~~c 24 (26)
T 1hvw_A 15 CSQSCTGGRC 24 (26)
T ss_dssp SSCCEETTEE
T ss_pred cccccccccc
Confidence 4899998776
No 7
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=21.92 E-value=28 Score=20.65 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=16.9
Q ss_pred hcccCCC-----hHHHHHHHHHhhcccc
Q psy2958 19 CWKRLPS-----FQQVGDILASRYEGAY 41 (129)
Q Consensus 19 CW~~lp~-----Fr~IG~~Lk~kY~~A~ 41 (129)
-|+.|++ |.+.+..++++|+..+
T Consensus 36 ~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 36 NWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888875 7778888888887543
No 8
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=21.15 E-value=24 Score=21.34 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=16.6
Q ss_pred hhcccCCC---hHHHHHHHHHhhcccc
Q psy2958 18 VCWKRLPS---FQQVGDILASRYEGAY 41 (129)
Q Consensus 18 TCW~~lp~---Fr~IG~~Lk~kY~~A~ 41 (129)
.-|+.|++ |.+.+..++++|....
T Consensus 40 ~~Wk~ls~K~~y~~~A~~~k~~y~~~~ 66 (73)
T 3nm9_A 40 ELWRAMKDKSEWEAKAAKAKDDYDRAV 66 (73)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 35888874 6677777777777543
No 9
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=19.56 E-value=32 Score=21.79 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhccccee
Q psy2958 27 QQVGDILASRYEGAYFV 43 (129)
Q Consensus 27 r~IG~~Lk~kY~~A~~V 43 (129)
.+||..|+..|+..+.=
T Consensus 32 ~~IG~~LR~~Yd~vv~E 48 (68)
T 3t0y_B 32 QAIGVKLRQMFDEVVNE 48 (68)
T ss_dssp CHHHHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57999999999987653
No 10
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=19.02 E-value=39 Score=19.93 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=13.8
Q ss_pred hcccCCC-----hHHHHHHHHHhhccc
Q psy2958 19 CWKRLPS-----FQQVGDILASRYEGA 40 (129)
Q Consensus 19 CW~~lp~-----Fr~IG~~Lk~kY~~A 40 (129)
-|+.|++ |.+.+..++++|..+
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 66 (71)
T 4a3n_A 40 SWKALTLAEKRPFVEEAERLRVQHMQD 66 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4777764 666666666666543
Done!