RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2958
         (129 letters)



>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA,
           N-terminal domain {Bacteria (Listeria monocytogenes)
           [TaxId: 1639]}
          Length = 131

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 22  RLPSFQQVGDILASRYEGAYFVKQVGDILASRYEGAYFVKVVNNQRKRNVKRLRSAVRDA 81
           +L S  + G I+  +Y    FV   G I      G Y ++V++ Q    V ++ + +++ 
Sbjct: 41  KLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKI-NELKEL 99

Query: 82  KQPNRTELVYM 92
              N T   Y+
Sbjct: 100 LSKNLTHFFYV 110


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 279

 Score = 25.2 bits (55), Expect = 2.7
 Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 6/35 (17%)

Query: 7  CHGMSGSCSVKVCWKRLPSFQQVGDILASRYEGAY 41
           HGM  SC   +    +         +  +  G +
Sbjct: 11 WHGMGDSCCNPLSMGAIKKM------VEKKIPGIH 39


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
            10891]}
          Length = 1264

 Score = 24.5 bits (53), Expect = 4.6
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 77   AVRDAKQPNRTELVYMEESPDYCQRNET 104
              ++A    R EL  M+E+    +R+  
Sbjct: 1018 GAQEAAIATREELAEMDETLMRARRHSY 1045


>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 429

 Score = 23.9 bits (51), Expect = 7.2
 Identities = 2/16 (12%), Positives = 7/16 (43%)

Query: 4   VCKCHGMSGSCSVKVC 19
           + K   +S    +++ 
Sbjct: 333 LTKLDVLSDLNEIQLG 348


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,079
Number of extensions: 19382
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 4
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)