RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2960
(405 letters)
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 360 bits (927), Expect = e-123
Identities = 168/341 (49%), Positives = 219/341 (64%), Gaps = 9/341 (2%)
Query: 62 LDTSARGFSYLANK---LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADIN 118
L T F + + LVY HG P +VV ++N L +V+ +V VKML AP+NP+DIN
Sbjct: 13 LGTENLYFQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDIN 72
Query: 119 TIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDV 178
IQG Y + P LPAV G EGV +VV VGS+V+ L GD VIP LGTWR F+ +
Sbjct: 73 MIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEA 132
Query: 179 LMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG 238
L++VP DI L + + NPCTAYRML D+ L PGD VIQN +NS GQ VIQIA G
Sbjct: 133 LIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALG 192
Query: 239 LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI---PKPKLALNCVGGNS 295
L+TIN+VR+R DI KL LKSLGA++V TEEELR P+P+LALNCVGG S
Sbjct: 193 LRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKS 252
Query: 296 ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM 355
+T LLR L G MVTYGGM+++PV S IFKD+ LRG W+++W+K++ + K +
Sbjct: 253 STELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHS-PDQFKEL 311
Query: 356 MNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS--IQGK 394
+ L +++R G+L APA V L+++Q AL +M I K
Sbjct: 312 ILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSK 352
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 337 bits (865), Expect = e-114
Identities = 134/360 (37%), Positives = 193/360 (53%), Gaps = 38/360 (10%)
Query: 76 LVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL--- 130
++Y QHG P V+ ++ ++ ++ +EV+VK L +PVNP+DIN IQGVYP KP
Sbjct: 7 VLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTG 66
Query: 131 ------PAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKV-- 182
A G EG+ EV++VGS+VSSL GD VIP + GTWR + N D +K+
Sbjct: 67 FGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPN 126
Query: 183 ---------PKDIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQNVIQ 232
P + + + + I+ NP TAY ML Y L+PG D IQNG SA G+ Q
Sbjct: 127 PAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQ 186
Query: 233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI--------PKP 284
I + +I+++R+R ++D++ + LK LGA V TE++ + +I +
Sbjct: 187 IGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA 246
Query: 285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK 344
KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T G W+T K
Sbjct: 247 KLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLK 306
Query: 345 ENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL-----MNTMSIQGKSGVKY 399
NKE + S +N++ GKL + S GK + Y
Sbjct: 307 NNKE--LKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 364
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 242 bits (621), Expect = 9e-78
Identities = 83/326 (25%), Positives = 142/326 (43%), Gaps = 14/326 (4%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
+ +++ G P V+ VE + + ++ +EV V+MLV P+NP+D+ I G Y + LP +PG
Sbjct: 8 IQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPG 67
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
+EGVG V VG+ VS +G V+P GTW+ Y K + D ++ +P I + +
Sbjct: 68 YEGVGIVENVGAFVSRELIGKRVLPLRGE-GTWQEYVKTSADFVVPIPDSIDDFTAAQMY 126
Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
NP TA+ + +L DV++ N SA G Q+++ + I + RN +
Sbjct: 127 INPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE--- 183
Query: 256 SYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTY 312
L LGA YV + L + + A++ +GG L +L G +T
Sbjct: 184 -ELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTI 242
Query: 313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA 372
G +S V + + W E + + L ++ +L
Sbjct: 243 GLLSGIQVN-WAEIVTKAKVHANIFHLRHWNDEVSP-YKWQETFRHLIRLVENEQLRFMK 300
Query: 373 -HKFVTLKNFQEA---LMNTMSIQGK 394
H L + + A + + +GK
Sbjct: 301 VHSTYELADVKAAVDVVQSAEKTKGK 326
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 239 bits (613), Expect = 2e-76
Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 25/328 (7%)
Query: 76 LVYNQHGTPLRVVTVENETLNSV-----------QKHEVVVKMLVAPVNPADINTIQGVY 124
L+ G E + +V++K+ +A +NP+D+ I+G Y
Sbjct: 14 LLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQY 73
Query: 125 PIKPTLPAVPGFEGVGEVVEVGSDVSS-LAVGDHVIPDTQHL--GTWRNYGKFNHDVLMK 181
GFEGVG +V G + + VG V T G+W Y +
Sbjct: 74 GQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIP 133
Query: 182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT 241
+ + + + + NP TA M + S + +I +A+ G +
Sbjct: 134 LLDTVRDEDGAAMIVNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRP 192
Query: 242 INIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATN 298
I VR + I LK +GA +V + R+ + P++ L+ V G A+
Sbjct: 193 IVTVRRDEQIA----LLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPLASA 248
Query: 299 LLRTLVSKGVMVTYGGMSREPVQI-PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN 357
+ + + + YG + + I IF+ + G W++ W ++ KE R +
Sbjct: 249 IFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKE--RRGPAIL 306
Query: 358 ELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
E + G+ + V L +
Sbjct: 307 EAQKRFSDGRWSTDVTAVVPLAEAIAWV 334
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 158 bits (402), Expect = 5e-45
Identities = 61/355 (17%), Positives = 121/355 (34%), Gaps = 59/355 (16%)
Query: 78 YNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI----------- 126
+ L +++++ EV++++ +P+NP+D+ + G +
Sbjct: 11 RIKSSGEL-ELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAER 69
Query: 127 -----------------KPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWR 169
+ G EG G VVE GS ++ A+ + +
Sbjct: 70 PIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVA-AIGGAMYS 128
Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
Y D + +P+ + + NP TA M++ L ++ A S GQ
Sbjct: 129 QYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQM 187
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPK-PKL 286
+ QI G+K +NIVR ++ D LK+ GA +V +A + +
Sbjct: 188 LNQICLKDGIKLVNIVRKQEQADL----LKAQGAVHVCNAASPTFMQDLTEALVSTGATI 243
Query: 287 ALNCVGGNSATNLLRTLVSKGV-----------------MVTYGGMSREPVQIPTSAFIF 329
A + GG + T + + + YGG+ P + +
Sbjct: 244 AFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRN--FG 301
Query: 330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 384
+ G + + + K ER + + + A+ K ++L +
Sbjct: 302 MAWGMGGWLLFPFLQ--KIGRERANALKQRVVAELKTTFASHYSKEISLAEVLDL 354
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 138 bits (350), Expect = 1e-37
Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 16/295 (5%)
Query: 99 QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
+ H+V++K+ VNP + G Y KP LP PG + G + VG + S+ GD V
Sbjct: 56 KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115
Query: 159 IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVI 218
+ G + Y + K+P+ + + + I TAYR L + G+ V+
Sbjct: 116 FTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVL 175
Query: 219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNIS 276
+GA+ G QIAR +GLK + + K + GA VF E +
Sbjct: 176 VHGASGGVGLAACQIARAYGLKILGTAGTE---EGQK-IVLQNGAHEVFNHREVNYIDKI 231
Query: 277 RDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLR 335
+ K + + + + + L L G ++ G ++I + K+ ++
Sbjct: 232 KKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDTMAKESSII 289
Query: 336 G-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
G + ++E ++ A L M G L L+ EA N +
Sbjct: 290 GVTLFSSTKEEFQQYAA------ALQAGMEIGWLKPVIGSQYPLEKVAEAHENII 338
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 136 bits (345), Expect = 6e-37
Identities = 60/328 (18%), Positives = 115/328 (35%), Gaps = 26/328 (7%)
Query: 76 LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
+V G LR+ Q E+ +++ +N D+ QG P P V
Sbjct: 7 VVLAGFGGLNKLRLFRKAMPEP---QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLV 63
Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
PGFE G V +G V +GD V+ + W + + K+P D++ +E +
Sbjct: 64 PGFECSGIVEALGDSVKGYEIGDRVMAFVNY-NAWAEVVCTPVEFVYKIPDDMSFSEAAA 122
Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
N TAY ML + +L G V+ + A GQ V Q+ T+ + +
Sbjct: 123 FPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHE- 181
Query: 254 LKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
+K + + S + L+C+ G++ L L G + YG
Sbjct: 182 ---AIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYG 238
Query: 314 GMS----------------REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN 357
+ + ++ ++ + G + + + + ++
Sbjct: 239 SSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVE 298
Query: 358 ELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
+L + K+ L+ +EA+
Sbjct: 299 KLIGLYNQKKIKPVVDSLWALEEVKEAM 326
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 135 bits (341), Expect = 2e-36
Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 16/314 (5%)
Query: 76 LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
+ P L VE + VVV + A V D +G Y +K P V
Sbjct: 25 IQAQSLSGPEGLVYTDVETPGA---GPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFV 81
Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
PG E G V + S + GD V+ G + ++ P + E
Sbjct: 82 PGIETAGVVRSAP-EGSGIKPGDRVMAFNFI-GGYAERVAVAPSNILPTPPQLDDAEAVA 139
Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
+ +N T Y L G+ V+ GA G IQIA+ G K I +V
Sbjct: 140 LIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRT---AA 196
Query: 254 LKSYLKSLGADYVF-TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVT 311
+ ++KS+GAD V EE R+A+ + ++ +GG + + +RTL S+G ++
Sbjct: 197 TE-FVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLV 255
Query: 312 YGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 371
G + I + + ++ +L G + + + + L +++ G + P
Sbjct: 256 VGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYE--TQAGLEKLVAEG-MRPP 312
Query: 372 AHKFVTLKNFQEAL 385
+ L ++AL
Sbjct: 313 VSARIPLSEGRQAL 326
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 132 bits (334), Expect = 2e-35
Identities = 76/342 (22%), Positives = 126/342 (36%), Gaps = 51/342 (14%)
Query: 76 LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
+V G P L V + EV V++ A +N D+ +GV K LP V
Sbjct: 4 VVMRARGGPEVLEVADLPVPE---PGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHV 60
Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL--------------------------GT 167
G +G G V VG V A GD V+ + GT
Sbjct: 61 LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT 120
Query: 168 WRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG 227
+ Y L PK+++ E + I TA++M+ D + PGD V+ A S
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVS 180
Query: 228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK-P 284
IQIA+ +G + I + DKL+ K+LGAD T + R + K
Sbjct: 181 VAAIQIAKLFGARVIATAGSE---DKLR-RAKALGADETVNYTHPDWPKEVRRLTGGKGA 236
Query: 285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM-TRWQ 343
++ G +++ + G + G S +P + ++ +++ G M ++
Sbjct: 237 DKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASK-- 294
Query: 344 KENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
S + + + GKL + + L+ E
Sbjct: 295 ----------SRLFPILRFVEEGKLKPVVGQVLPLEAAAEGH 326
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 132 bits (335), Expect = 2e-35
Identities = 63/328 (19%), Positives = 102/328 (31%), Gaps = 47/328 (14%)
Query: 85 LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
L++ +H+++V+ L +N D ++ + P VP + G V
Sbjct: 41 LKLAERPVPEA---GEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEA 97
Query: 145 VGSDVSSLAVGDHVI--PDTQHL---------------------GTWRNYGKFNHDVLMK 181
VG V+ GD VI L G Y +
Sbjct: 98 VGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVA 157
Query: 182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT 241
PK + E S + TA+ L + L GD V+ G +QIA+ G +
Sbjct: 158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGT-GGVALFGLQIAKATGAEV 216
Query: 242 INIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATN 298
I +R +KL +LGAD+ EE+ + + L GG
Sbjct: 217 IVTSSSR---EKLD-RAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQ 272
Query: 299 LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMN 357
L+ + G + G + V P + K ++G R +
Sbjct: 273 SLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHR------------RALE 320
Query: 358 ELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
+L + L EAL
Sbjct: 321 DLVGAVDRLGLKPVIDMRYKFTEVPEAL 348
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 131 bits (333), Expect = 2e-35
Identities = 65/353 (18%), Positives = 117/353 (33%), Gaps = 70/353 (19%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-------PIKPT 129
+ G PL + + + +V++K+ A V +D++ QG + +
Sbjct: 5 RLVEIGKPLSLQEIGVPKP---KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTW 168
LP G E G++ EVG +V + GD V + LG
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN 121
Query: 169 RN-----YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQN 220
+ Y H M + + E + +T C T YR ++ + L P ++
Sbjct: 122 FDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLT---CSGITTYRAVRKAS-LDPTKTLLVV 177
Query: 221 GANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNIS 276
GA G +QIA+ G I + + ++ K GADYV ++ L I
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVRE---EAVE-AAKRAGADYVINASMQDPLAEIR 233
Query: 277 RDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDIT 333
R ++ ++ ++K VMV G+ + +I
Sbjct: 234 RITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV---GLFGADLHYHAPLITLSEIQ 290
Query: 334 LRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
G + + + GK+ K + L+ EA+
Sbjct: 291 FVGSLVGNQSD------------FLGIMRLAEAGKVKPMITKTMKLEEANEAI 331
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 132 bits (334), Expect = 3e-35
Identities = 71/308 (23%), Positives = 119/308 (38%), Gaps = 40/308 (12%)
Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS-LAVGDHVIP 160
+++V+ VN +DIN G Y P GFEG+GEVV +G S+ VG V
Sbjct: 55 DLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA- 113
Query: 161 DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
G++ Y + VP E + + TAY LK+ LS G V+
Sbjct: 114 -YMAPGSFAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVT 170
Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRD 278
A GQ +Q+++ I + +K +LKSLG D E + + +
Sbjct: 171 AAAGGTGQFAMQLSKKAKCHVIGTCSSD---EKSA-FLKSLGCDRPINYKTEPVGTVLKQ 226
Query: 279 ASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF-------- 327
P+ + VGG + L +KG ++ G +S S
Sbjct: 227 EY---PEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAK 283
Query: 328 -IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL--------AAPAHKFVTL 378
+ K +++G ++ + + + M+ L EM +G L +P +F L
Sbjct: 284 LLKKSASVQGFFLNHYLSKYQA------AMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGL 337
Query: 379 KNFQEALM 386
++ A+
Sbjct: 338 ESIFRAVN 345
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 131 bits (332), Expect = 6e-35
Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 54/360 (15%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
L N H L + +V V++ +NP+D + T A G
Sbjct: 15 LTVNDHDEVTVWNAAPCPMLP---RDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLG 67
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI-------PDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
+ G VV VGSDV+ + VGD V P T G + Y V K+PK ++
Sbjct: 68 TDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSF 127
Query: 189 TEISGITSNPCTAYRMLKDYNSLSP------------GDVVIQNGANSACGQNVIQIARH 236
+ + + + TA +K P V+ G ++A +Q+ R
Sbjct: 128 EQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRL 187
Query: 237 WGLKTINIV--RNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVG 292
G I N D KS GA+ VF L R + + AL+C+
Sbjct: 188 SGYIPIATCSPHNFD-------LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240
Query: 293 GNSATNLLRTLVSK--GVMVTYGGMSREPVQIPTSAFIF--------KDITLRGHWMTRW 342
+T + + G V+ + + T +
Sbjct: 241 NVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPG 300
Query: 343 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFV--TLKNFQEALMNTMSIQGK-SGVKY 399
+E ++ E + +++ G+L + V + ++ + + +G+ SG K
Sbjct: 301 SEEERQFGED--LWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGM--ELVRKGELSGEKL 356
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 128 bits (325), Expect = 3e-34
Identities = 72/322 (22%), Positives = 128/322 (39%), Gaps = 33/322 (10%)
Query: 77 VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
++ G P L V E + VVV+ +N D G+YP P LP+
Sbjct: 6 QFSTVGGPEVLEYVDFE---PEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGL 61
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
G EG G V VG +V+ VGD V T LG + L+K+ ++ + + +
Sbjct: 62 GAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAAL 121
Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
T +L+ + PG++++ + A G Q A+ G K I V + +K
Sbjct: 122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP---EKA 178
Query: 255 KSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
+ K+LGA + + ++ P + + VG ++ L ++ +G+
Sbjct: 179 A-HAKALGAWETIDYSHEDVAKRVLELTDGKKCP---VVYDGVGQDTWLTSLDSVAPRGL 234
Query: 309 MVTYGGMSREPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEM 362
+V++G S + KD TL + ++M +EL +M
Sbjct: 235 VVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNA--------QNLQTMADELFDM 286
Query: 363 MRTGKLAAPAHKFVTLKNFQEA 384
+ +GKL + LK+ +A
Sbjct: 287 LASGKLKVDGIEQYALKDAAKA 308
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 126 bits (318), Expect = 2e-33
Identities = 71/334 (21%), Positives = 135/334 (40%), Gaps = 43/334 (12%)
Query: 76 LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY----PIKPT 129
+ ++Q G P L++V +K+++++K+ A +NP D T G +K
Sbjct: 10 IQFDQFGPPKVLKLVDTPTPE---YRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNN 66
Query: 130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHV---IPDTQHLGTWRNYGKFNHDVLMKVPKDI 186
LP+ G++ GEV+E+GSDV+++ +GD V H + Y + D +++ + +
Sbjct: 67 LPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKL 126
Query: 187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV- 245
+ + + + + TA + L + + GDVV+ + G IQ+A+ G I
Sbjct: 127 SFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS 185
Query: 246 -RNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRT 302
RN +LK+LGA+ + EE+ ++ VGG+ +
Sbjct: 186 KRNHA-------FLKALGAEQCINYHEEDFLLAIST----PVDAVIDLVGGDVGIQSIDC 234
Query: 303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM 362
L G +V+ + K G + E ++ L ++
Sbjct: 235 LKETGCIVSVPTI---TAGRVIEVAKQKHRRAFGLLKQF-------NIEE---LHYLGKL 281
Query: 363 MRTGKLAAPAHKFVTLKNFQEA--LMNTMSIQGK 394
+ KL + L A L+ T ++GK
Sbjct: 282 VSEDKLRIEISRIFQLSEAVTAHELLETGHVRGK 315
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 125 bits (317), Expect = 4e-33
Identities = 72/326 (22%), Positives = 121/326 (37%), Gaps = 47/326 (14%)
Query: 77 VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
+++HG P L+ V ++E+ V+ +N D G+YP P+LP+
Sbjct: 6 EFHKHGGPEVLQAVEFT---PADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGL 61
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
G E G V +VGS V + GD V+ LG + + D +P I+ + +
Sbjct: 62 GTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAAS 121
Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
T Y +L+ + P + + + A G Q A+ G K I V K
Sbjct: 122 FLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA---QKA 178
Query: 255 KSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
+ GA V E L+ I+ + + + VG ++ L L +G+
Sbjct: 179 Q-SALKAGAWQVINYREEDLVERLKEITGGKKVR---VVYDSVGRDTWERSLDCLQRRGL 234
Query: 309 MVTYGGMSREPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEM 362
MV++G S + K +L+G+ TR E NEL +
Sbjct: 235 MVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTR--------EELTEASNELFSL 286
Query: 363 MRTGKL--------------AAPAHK 374
+ +G + A AH+
Sbjct: 287 IASGVIKVDVAEQQKYPLKDAQRAHE 312
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 123 bits (311), Expect = 3e-32
Identities = 71/338 (21%), Positives = 118/338 (34%), Gaps = 37/338 (10%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP-IKPTLPAVP 134
V + P + + +V+V++ + NP D G P + LPA+
Sbjct: 11 AVVEEANGPFVLRKLARPQ---PAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAIL 67
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI----PDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
G + G VV VG +V S VGD V GT + + +L P + + +
Sbjct: 68 GMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQ 127
Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
S + TA+ L D + G V+ G G IQIA G + R D
Sbjct: 128 ASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSD- 186
Query: 251 IDKLKSYLKSLGADYVFTEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVM 309
Y++ LGA + E + + + + + L + +GG + G +
Sbjct: 187 ----LEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHV 242
Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL- 368
V+ G + + FK T G + N+ A M+ E +++TGKL
Sbjct: 243 VSCLGWGTHKL----APLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA 298
Query: 369 ------------AAPAHKFVTLKNFQEALMNTMSIQGK 394
A+ V + +GK
Sbjct: 299 PRLDPRTFSIAEIGSAYDAV------LGRNDVPRQRGK 330
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 122 bits (308), Expect = 7e-32
Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 29/320 (9%)
Query: 77 VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
+ ++ G ++ + S+ + E+++K VN + +G+YP + P V
Sbjct: 13 LIDEIGGYDVIKYEDYP---VPSISEEELLIKNKYTGVNYIESYFRKGIYPCE--KPYVL 67
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGK-FNHDVLMKVPKDIALTEISG 193
G E G VV G V++ VGD V T+ Y K + +MK+PK + E+
Sbjct: 68 GREASGTVVAKGKGVTNFEVGDQVA--YISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125
Query: 194 ITSNP---CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
+ TA + + GD V+ A G + Q+ + G TI +
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD-- 183
Query: 251 IDKLKSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLV 304
+KLK K GA+Y+ ++ + + + + VG ++ L L
Sbjct: 184 -EKLK-IAKEYGAEYLINASKEDILRQVLKFTNGKGVD---ASFDSVGKDTFEISLAALK 238
Query: 305 SKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR 364
KGV V++G S + K+ITL + + + E K +E ++
Sbjct: 239 RKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGY---IADPEEWKYYSDEFFGLVN 295
Query: 365 TGKLAAPAHKFVTLKNFQEA 384
+ KL +K L++++ A
Sbjct: 296 SKKLNIKIYKTYPLRDYRTA 315
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 121 bits (306), Expect = 2e-31
Identities = 68/323 (21%), Positives = 121/323 (37%), Gaps = 29/323 (8%)
Query: 77 VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKP--TLPA 132
V ++ G P V+ + S +V ++ VN D G+ P
Sbjct: 6 VIHKKGGPDNFVWEEVK---VGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62
Query: 133 VPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS 192
V GFE V EVG V+ VG+ V LG + + + L+KVPKD+ L +
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDL-DDV 121
Query: 193 GITSNP---CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
+ TA +L + + PGD V+ + A G ++ ARH G I V
Sbjct: 122 HLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE- 180
Query: 250 DIDKLKSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTL 303
+K + + LG + E +R I+ + + + +G ++ L L
Sbjct: 181 --EKAE-TARKLGCHHTINYSTQDFAEVVREITGGKGVD---VVYDSIGKDTLQKSLDCL 234
Query: 304 VSKGVMVTYGGMS--REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE 361
+G+ YG S +P+++ + + + + + +E L +
Sbjct: 235 RPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHY---MSNRSEIDEGSKCLFD 291
Query: 362 MMRTGKLAAPAHKFVTLKNFQEA 384
++ G L + K L+ A
Sbjct: 292 AVKAGVLHSSVAKTFPLREAAAA 314
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 122 bits (308), Expect = 4e-31
Identities = 62/392 (15%), Positives = 124/392 (31%), Gaps = 84/392 (21%)
Query: 75 KLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY---------- 124
+ + P + + +++ + + E +V ++ + VN ++T
Sbjct: 45 AGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY 104
Query: 125 ------PIKPTLP-AVPGFEGVGEVVEVGSDVSSLAVGDHVI------------------ 159
+ LP V G + G V+ G V++ GD V+
Sbjct: 105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTM 164
Query: 160 --PDTQHLGTWRNYG------KFNHDVLMKVPKDIALTEISGITSNPCTAYRML--KDYN 209
P+ + G N+G + LM P ++ E + TAYR L ++
Sbjct: 165 LDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGA 224
Query: 210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-- 267
+ GD V+ GA+ G Q A G I +V + K + +++GA+ +
Sbjct: 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP---QKAE-ICRAMGAEAIIDR 280
Query: 268 TEEELRNISRDASIPKPK------------------LALNCVGGNSATNLLRTLVSKGVM 309
E R + + + + G + + G +
Sbjct: 281 NAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTI 340
Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
T S + + G H+ + E ++ G++
Sbjct: 341 TTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYRE------------AWEANRLIAKGRI 388
Query: 369 AAPAHKFVTLKNFQEAL--MNTMSIQGKSGVK 398
K +L++ +A ++ QGK GV
Sbjct: 389 HPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVL 420
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 118 bits (298), Expect = 2e-30
Identities = 61/347 (17%), Positives = 118/347 (34%), Gaps = 64/347 (18%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-PIKPTLPAVPG 135
+ + PL + V EV++++ A V D+ +GV LP + G
Sbjct: 8 LLKKFSEPLSIEDVNIPEPQG---EEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRN---- 170
E G +VEVG +++ + GD+V+ + G N
Sbjct: 65 HENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFS 123
Query: 171 -YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLK---DYNSLSPGDVVIQNGAN 223
Y + ++ E + + T+ ++ + S VVI NG
Sbjct: 124 EYMLVKSSRWLVKLNSLSPVEAAPLA---DAGTTSMGAIRQALPFISKFAEPVVIVNGIG 180
Query: 224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIP 282
IQI + + +R + LGADYV ++ I++
Sbjct: 181 -GLAVYTIQILKALMKNITIVGISRSK-KHRD-FALELGADYVSEMKDAESLINKLTDGL 237
Query: 283 KPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDITLRG-HW 338
+A++ VG T L L+++ ++V GM + V + + L G ++
Sbjct: 238 GASIAIDLVGTEETTYNLGKLLAQEGAIILV---GMEGKRVSLEAFDTAVWNKKLLGSNY 294
Query: 339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
+ + ++ + +GK+ K L + +A
Sbjct: 295 GSLND------------LEDVVRLSESGKIKPYIIKV-PLDDINKAF 328
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 120 bits (302), Expect = 3e-30
Identities = 60/368 (16%), Positives = 103/368 (27%), Gaps = 82/368 (22%)
Query: 84 PLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-----------------PI 126
+ + + + + EV+V ++ + +N + +
Sbjct: 46 VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105
Query: 127 KPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL--------------------- 165
V G + G VV G V GDHVI H+
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWG 165
Query: 166 -----GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML--KDYNSLSPGDVVI 218
G YG L+ P + E + TAYRML + GD+V+
Sbjct: 166 FETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVL 225
Query: 219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF----------- 267
GA+ G IQ ++ G + +V + K +++LG D V
Sbjct: 226 IWGASGGLGSYAIQFVKNGGGIPVAVVSSA---QKEA-AVRALGCDLVINRAELGITDDI 281
Query: 268 ---------TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 318
T +L + + + +P + G + + G +VT G S
Sbjct: 282 ADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGY 341
Query: 319 PVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 377
K + G H + + +G +
Sbjct: 342 LHTFDNRYLWMKLKKIVGSHGANHEE------------QQATNRLFESGAVVPAMSAVYP 389
Query: 378 LKNFQEAL 385
L EA
Sbjct: 390 LAEAAEAC 397
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 117 bits (296), Expect = 3e-30
Identities = 53/320 (16%), Positives = 120/320 (37%), Gaps = 37/320 (11%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
+ T VT+ + + ++ +++V+ +NP D I+ PI + VPG
Sbjct: 6 QVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKA-NPINWSNGHVPGV 64
Query: 137 EGVGEVVEVGSDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
+G G +V+VG+ V S +G V + G++ + N D +M +P +++ + +
Sbjct: 65 DGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAAL 124
Query: 195 TSNPC---TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI 251
PC TA++ + L+ V+ G + + Q+ + G + +
Sbjct: 125 ---PCPLLTAWQAF-EKIPLTKQREVLIVGFGAV-NNLLTQMLNNAGYVVDLVSASLS-- 177
Query: 252 DKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM 309
++ G +++ + + A + V +A L+ +L + G +
Sbjct: 178 ---QALAAKRGVRHLYREPSQVTQKY--FA-------IFDAVNSQNAAALVPSLKANGHI 225
Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSM---MNELTEMMRT 365
+ + P + I+ H + + + + + + L ++
Sbjct: 226 ICIQD----RIPAPIDPAFTRTISY--HEIALGALHDFGDRQDWQILMQQGEALLTLIAQ 279
Query: 366 GKLAAPAHKFVTLKNFQEAL 385
GK+ A + EAL
Sbjct: 280 GKMEIAAPDIFRFEQMIEAL 299
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 117 bits (295), Expect = 7e-30
Identities = 72/325 (22%), Positives = 123/325 (37%), Gaps = 16/325 (4%)
Query: 77 VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
G P + + + EV+V+ VN DI QG YP +
Sbjct: 33 DLKSFGGPDVMVIGKRPLPVA---GEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
G E GE+V VG VS AVGD V G + Y ++ PK + + +
Sbjct: 90 GLELSGEIVGVGPGVSGYAVGDKVCGLANG-GAYAEYCLLPAGQILPFPKGYDAVKAAAL 148
Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
T + L L+ G+ V+ +G S G IQ+AR +G + + K
Sbjct: 149 PETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST---GKC 205
Query: 255 KSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
+ + LGA E+ + + + + L+ +G + +L G +
Sbjct: 206 E-ACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSII 264
Query: 313 GGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 371
+ ++ S + K +T+ G M E K A R +++E+ ++ G +A
Sbjct: 265 AFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEK-RAIRDDLLSEVWPLLEAGTVAPV 323
Query: 372 AHKFVTLKNFQEA--LMNTMSIQGK 394
HK ++ +A L+ S GK
Sbjct: 324 IHKVFAFEDVADAHRLLEEGSHVGK 348
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 116 bits (292), Expect = 2e-29
Identities = 74/347 (21%), Positives = 140/347 (40%), Gaps = 61/347 (17%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLPAVP 134
+++ PLR+ V+ L + +V+V++ A V D++ +QG++ ++P LP
Sbjct: 20 RLHEYNKPLRIEDVDYPRLEG--RFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTL 77
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRN--- 170
G E VG + EV V L GD VI + + G +
Sbjct: 78 GHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGF 137
Query: 171 --YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKD-YNSLSPGDVVIQNGANS 224
+ + +H ++K+PKDI+ ++ + TAYR +K +L PG V G
Sbjct: 138 AEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-G 196
Query: 225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIP 282
G +Q+ + T+ I + + +KLK + LGAD+V + ++ +
Sbjct: 197 GLGHIAVQLLKVMTPATV-IALDVKE-EKLK-LAERLGADHVVDARRDPVKQVMELTRGR 253
Query: 283 KPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDITLRGH-W 338
+A++ VG + + L+ + ++V YGG ++ PT I +++ G
Sbjct: 254 GVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG----ELRFPTIRVISSEVSFEGSLV 309
Query: 339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
+ ++EL + GK+ L + L
Sbjct: 310 GNYVE------------LHELVTLALQGKVRVEVDIH-KLDEINDVL 343
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 111 bits (279), Expect = 5e-28
Identities = 64/319 (20%), Positives = 106/319 (33%), Gaps = 45/319 (14%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
V + G PL +V + ++ EVV+++ +N AD G Y + P +PG
Sbjct: 4 WVLKRLGGPLELVDLPEPEA---EEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
E VG V G G L+ +P+ ++ E +
Sbjct: 61 MEVVGVV-----------EGRRYAALVPQ-GGLAERVAVPKGALLPLPEGLSPEEAAAFP 108
Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
+ TAY LK PG+ V+ A A G +Q+AR GL+ + +KL
Sbjct: 109 VSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP---EKLA 164
Query: 256 SYLKSLGADYV--FTEEELR-------NISRDASIPKPKLALNCVGGNSATNLLRTLVSK 306
+LGA+ + E R ++ + V G L L
Sbjct: 165 -LPLALGAEEAATYAEVPERAKAWGGLDLVLE------------VRGKEVEESLGLLAHG 211
Query: 307 GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 366
G +V G E IP + +++ + G W+ E + L +
Sbjct: 212 GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWL-TPLLREGALVEE--ALGFLLPRL-GR 267
Query: 367 KLAAPAHKFVTLKNFQEAL 385
+L + A
Sbjct: 268 ELRPVVGPVFPFAEAEAAF 286
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 108 bits (273), Expect = 7e-27
Identities = 71/294 (24%), Positives = 111/294 (37%), Gaps = 47/294 (15%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
V G PL + V + +V VK+ + V D++ G +P+KPTLP +PG
Sbjct: 7 VVRAFGAPLTIDEVP---VPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHLGTWRNYGKF- 174
EGVG V VGS VS + GD V +P + Q + G +
Sbjct: 64 EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYG 123
Query: 175 -----NHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
+ + + +P + EI+ I C T Y+ LK + PG V+ +G
Sbjct: 124 EYVVADPNYVGLLPDKVGFVEIAPIL---CAGVTVYKGLKVTD-TRPGQWVVISGIGGL- 178
Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKP 284
G +Q AR GL+ + D KL + LGA+ + + + I
Sbjct: 179 GHVAVQYARAMGLRVAAVDI---DDAKLN-LARRLGAEVAVNARDTDPAAWLQ-KEIGGA 233
Query: 285 KLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH 337
L A + + + G + G+ P + K IT+RG
Sbjct: 234 HGVLVTAVSPKAFSQAIGMVRRGGTIAL-NGLPPGDFGTPIFDVVLKGITIRGS 286
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 106 bits (267), Expect = 4e-26
Identities = 75/294 (25%), Positives = 118/294 (40%), Gaps = 47/294 (15%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
V Q PL++ VE ++ EV+V++ V D++ G +P+KP LP +PG
Sbjct: 5 VVEQFKEPLKIKEVE---KPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHLGTWRNYGKF- 174
EGVG V EVG V+ L VGD V IP + Q + G +
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYA 121
Query: 175 -----NHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
D ++K+P +++ E + I C T Y+ LK PG+ V G
Sbjct: 122 EYCRAAADYVVKIPDNLSFEEAAPIF---CAGVTTYKALKVTG-AKPGEWVAIYGI-GGL 176
Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKP 284
G +Q A+ GL + + +KL+ K LGAD V +E+ ++ +
Sbjct: 177 GHVAVQYAKAMGLNVVAVDIGD---EKLE-LAKELGADLVVNPLKEDAAKFMKEK-VGGV 231
Query: 285 KLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH 337
A+ A ++ G V G+ E + IP + I + G
Sbjct: 232 HAAVVTAVSKPAFQSAYNSIRRGGACVL-VGLPPEEMPIPIFDTVLNGIKIIGS 284
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 106 bits (266), Expect = 1e-25
Identities = 58/315 (18%), Positives = 98/315 (31%), Gaps = 37/315 (11%)
Query: 101 HEVVVKMLVAPVNPADINTIQGVYPI--------------KPTLPAVPGFEGVGEVVEVG 146
+EV+VK+ A VNP D+N G P G + G V+E G
Sbjct: 51 NEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECG 110
Query: 147 SDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM 204
DV GD V GT + + + + PK + T+ + + TA+
Sbjct: 111 LDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSA 170
Query: 205 LKDYNSL----SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS 260
+ L G V+ GA+ G IQ+ + W + ++
Sbjct: 171 INKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDA-----SELVRK 225
Query: 261 LGADYV--FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL--VSKGVMVTYGGMS 316
LGAD V + + + + L+ VGG++ T L S VT
Sbjct: 226 LGADDVIDYKSGSVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF 283
Query: 317 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM------MNELTEMMRTGKLAA 370
+ A + ++++ E++ GK+
Sbjct: 284 LLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRP 343
Query: 371 PAHKFVTLKNFQEAL 385
+ EA
Sbjct: 344 VIEQTFPFSKVPEAF 358
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 105 bits (264), Expect = 1e-25
Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 15/267 (5%)
Query: 77 VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
+++ G P L V V + + EV++K+ + +N AD+ QG Y P +
Sbjct: 27 HFDKPGGPENLYVKEVAKPSP---GEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83
Query: 135 GFEGVGEVVEVGSDVSS-LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
G E G V E+G +GD + G Y +LM +P+ + LT+ +
Sbjct: 84 GLEASGHVAELGPGCQGHWKIGDTAMALLPG-GGQAQYVTVPEGLLMPIPEGLTLTQAAA 142
Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
I TA+++L ++ GD V+ + S G IQ+ R G + ++ K
Sbjct: 143 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ---KK 199
Query: 254 LKSYLKSLGADYVF--TEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMV 310
L+ + LGA F +E+ + + L L+C+GG+ + L G V
Sbjct: 200 LQ-MAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWV 258
Query: 311 TYGGMSREPVQIPTSAFIF-KDITLRG 336
YG M + P + + K +L
Sbjct: 259 LYGLMGGGDINGPLFSKLLFKRGSLIT 285
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 104 bits (262), Expect = 2e-25
Identities = 68/355 (19%), Positives = 108/355 (30%), Gaps = 76/355 (21%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPT-LPAVPG 135
Y + G+ VV + T E+++K+ A + +DI + LP G
Sbjct: 5 QYTEIGSEPVVVDIPTPTPGP---GEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI-------------------------------PDTQH 164
EGVG V E+G V+ VGD V P
Sbjct: 62 HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGS 121
Query: 165 LGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNS-LSPGD-VVIQ 219
G+ Y + + D+ + +T T Y + L PG V+
Sbjct: 122 PGSMAEYMIVDSARHLVPIGDLDPVAAAPLT---DAGLTPYHAISRVLPLLGPGSTAVV- 177
Query: 220 NGANSACG---QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRN 274
G IQI R + I + DD D+L + +GAD
Sbjct: 178 ----IGVGGLGHVGIQILRAVSAARV-IAVDLDD-DRLA-LAREVGADAAVKSGAGAADA 230
Query: 275 ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKD 331
I + VG S + + +V+ +V G+ I
Sbjct: 231 IRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVV---GIHAGAHAKVGFFMIPFG 287
Query: 332 ITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
++ +W TR + + E+ + R G+L F TL A
Sbjct: 288 ASVVTPYWGTRSE------------LMEVVALARAGRLDIHTETF-TLDEGPAAY 329
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 102 bits (256), Expect = 2e-24
Identities = 56/294 (19%), Positives = 106/294 (36%), Gaps = 45/294 (15%)
Query: 77 VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
++ + L + + + +E+++ + + V D++ G +P+ LP V G
Sbjct: 10 IFYESHGKLEYKDIP---VPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGH 66
Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHLGTWRNYGKF- 174
EG G VV +G +V +GD+ I L + + G F
Sbjct: 67 EGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQ 126
Query: 175 -----NHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
+ +P+ L +++ I C T Y+ LK N L G V +GA
Sbjct: 127 QYATADAVQAAHIPQGTDLAQVAPIL---CAGITVYKALKSAN-LMAGHWVAISGAAGGL 182
Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPK 283
G +Q A+ G + + I K + +S+G + E+++ A+
Sbjct: 183 GSLAVQYAKAMGYRVLGIDGGE---GKEE-LFRSIGGEVFIDFTKEKDIVGAVLKATDGG 238
Query: 284 PKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
+N +A R + + G V G + + K I++ G
Sbjct: 239 AHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVG 292
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 97.0 bits (242), Expect = 1e-22
Identities = 59/311 (18%), Positives = 115/311 (36%), Gaps = 32/311 (10%)
Query: 76 LVYNQHG-----TPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
+ YN+ L + + H+++V++ VNP D + P T
Sbjct: 26 VGYNKPAPITDDASLLDIELPKPA---PAGHDILVEVKAVSVNPVDYKVRRSTPP-DGTD 81
Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
V G++ G V VG DV+ GD V GT + + ++ + PK +
Sbjct: 82 WKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDW 141
Query: 189 TEISGITSNPCTAYRMLKDYNSLSPGD------VVIQNGANSACGQNVIQIARHW-GLKT 241
E + + TA+ D ++ ++I GA G +QIAR L
Sbjct: 142 AEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGV-GSIAVQIARQRTDLTV 200
Query: 242 INIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKPKLALNCVGGNS-ATN 298
I + + ++KSLGA +V ++ ++ + P + + A
Sbjct: 201 IATASRPETQE----WVKSLGAHHVIDHSKPLAAEVAALG-LGAPAFVFSTTHTDKHAAE 255
Query: 299 LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSMMN 357
+ + +G P F K +++ M TR + +E+ ++N
Sbjct: 256 IADLIAPQGRFCLIDD----PSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLN 311
Query: 358 ELTEMMRTGKL 368
+++ ++ G+L
Sbjct: 312 DVSRLVDEGRL 322
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 96.5 bits (241), Expect = 2e-22
Identities = 60/285 (21%), Positives = 106/285 (37%), Gaps = 25/285 (8%)
Query: 97 SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGD 156
+ HE++VK+ VNP D P V GF+ +G V VG++V+ GD
Sbjct: 29 EPKVHEILVKIQSISVNPVDTKQRLMDVS---KAPRVLGFDAIGVVESVGNEVTMFNQGD 85
Query: 157 HVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD------Y 208
V G+ Y N ++ K PK+I+ + + TAY L D
Sbjct: 86 IVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRN 145
Query: 209 NSLSPGDVV-IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV- 266
+ + G + I NGA G QIA+ +GL+ I + I+ + K +GAD V
Sbjct: 146 RNENEGKTLLIINGA-GGVGSIATQIAKAYGLRVITTASRNETIE----WTKKMGADIVL 200
Query: 267 -FTEEELRNISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPT 324
E L + I + ++++ + +G + T
Sbjct: 201 NHKESLLNQF-KTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF---ENDQDL 256
Query: 325 SAFIFKDITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKL 368
+A K ++ +M R + + + + ++T +
Sbjct: 257 NALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIY 301
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 98.6 bits (246), Expect = 2e-22
Identities = 71/305 (23%), Positives = 114/305 (37%), Gaps = 40/305 (13%)
Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIP 160
EV + M A VN D G+YP A G EG G VVE G V+ LA GD V+
Sbjct: 239 GEVRIAMRAAGVNFRDALIALGMYP----GVASLGSEGAGVVVETGPGVTGLAPGDRVM- 293
Query: 161 DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
+ +H ++ ++P + + + TAY L D L PG+ ++ +
Sbjct: 294 -GMIPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVH 352
Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS 280
A G IQ+ARH G + DK ++ L +++ + SR
Sbjct: 353 SAAGGVGMAAIQLARHLGAEVYATASE----DKWQAV--ELSREHLAS-------SRTCD 399
Query: 281 IPKPKLA----------LNCVGGNSATNLLRTLVSKGVMVTYGGM-SREPVQIPTSAFIF 329
+ L LN + G A LR L G + G R+PV++ A
Sbjct: 400 FEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDPVEV---ADAH 456
Query: 330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
++ + + M++EL E+ L ++ EA + +
Sbjct: 457 PGVSYQAFDTVEAGPQ-----RIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEA-LRHL 510
Query: 390 SIQGK 394
S Q +
Sbjct: 511 S-QAR 514
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 90.8 bits (226), Expect = 2e-20
Identities = 68/384 (17%), Positives = 127/384 (33%), Gaps = 95/384 (24%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
+V + PL E ++ + + ++V++L A V +D++ +G P P LP + G
Sbjct: 21 MVLEKFNQPLVYKEFE---ISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVP-LPIILG 76
Query: 136 FEGVGEVVEVGSDVSS-----LAVGDHVIP----------------------DTQHLGTW 168
EG G VVEV + L GD ++ + + G
Sbjct: 77 HEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGIN 136
Query: 169 RNYGKFNH--------------DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPG 214
R ++ H ++KV + L ++ + TAY +Y G
Sbjct: 137 RGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAG 196
Query: 215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELR 273
V+ GA G + IAR G + + ++ + L + +GAD
Sbjct: 197 KTVVIQGA-GPLGLFGVVIARSLGAENVIVI----AGSPNRLKLAEEIGADLTL------ 245
Query: 274 NISRDASIPKPKL------------ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 321
N + + K L G + A L+ +G + G++
Sbjct: 246 NRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDP 305
Query: 322 IPTSAF---IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT- 377
+P + + K+ T +G W+ + + + K +T
Sbjct: 306 VPFKVYEWLVLKNATFKGIWV----SDTSH-------FVKTVSITSRNYQ--LLSKLITH 352
Query: 378 ---LKNFQEA--LMNTMSIQGKSG 396
LK +A LM ++
Sbjct: 353 RLPLKEANKALELME----SREAL 372
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 85.7 bits (213), Expect = 1e-18
Identities = 52/344 (15%), Positives = 106/344 (30%), Gaps = 74/344 (21%)
Query: 85 LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
+ V V +++VK+ + D + + G +P P P G E G VVE
Sbjct: 35 ISVRNVGIPEPG---PDDLLVKVEACGICGTDRHLLHGEFPSTP--PVTLGHEFCGIVVE 89
Query: 145 VGSDVSSLAVGDHVI---------------------PDTQHLGTWRN-----YGKFNHDV 178
GS V +A G + + + +G R+ Y
Sbjct: 90 AGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQ 149
Query: 179 LMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI 233
++P + A E + + + G V G G +Q+
Sbjct: 150 AFEIPLTLDPVHGAFCEPLACCLH---GVDLSG----IKAGSTVAILGG-GVIGLLTVQL 201
Query: 234 ARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF--TEEELRNISRDASIPKPK---LA 287
AR G T+ + K + +GA + ++ P +
Sbjct: 202 ARLAGATTVILS----TRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVV 257
Query: 288 LNCVGGNSATNL-LRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKE 345
+ C G R + G +V G + + V+I +F+++ + G ++
Sbjct: 258 IECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFI------ 311
Query: 346 NKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNFQEAL 385
+ +++ TG + + ++ L + +
Sbjct: 312 ------NPFVHRRAADLVATGAI--EIDRMISRRISLDEAPDVI 347
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 85.3 bits (212), Expect = 1e-18
Identities = 74/361 (20%), Positives = 127/361 (35%), Gaps = 67/361 (18%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL--PAV 133
++ + G +V V+ EV++K+L + D++ + + + P +
Sbjct: 8 IMKTKPGYGAELVEVDVPK---PGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQI 64
Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRN-- 170
G E GEVVE+G V + VGD+V +T+ G +
Sbjct: 65 MGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGV 124
Query: 171 ---YGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGA 222
Y + K PK I L E G + A + G V+ GA
Sbjct: 125 FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI--------SGKSVLITGA 176
Query: 223 NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDAS 280
G I +A+ G + + + D + K +GADYV EE++ D +
Sbjct: 177 -GPLGLLGIAVAKASGAYPVIVS---EPSDFRRELAKKVGADYVINPFEEDVVKEVMDIT 232
Query: 281 IPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI-FKDITLRGHW 338
+ L G A V+ V+ G+ V I + I FK +T+ G
Sbjct: 233 DGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGIT 292
Query: 339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPA---HKFVTLKNFQEALMNTMSIQGKS 395
+ + ++++GKL HK+ ++EA + GK+
Sbjct: 293 GRHLWETWYTVS----------RLLQSGKLNLDPIITHKYKGFDKYEEAF--ELMRAGKT 340
Query: 396 G 396
G
Sbjct: 341 G 341
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 82.6 bits (205), Expect = 1e-17
Identities = 64/345 (18%), Positives = 109/345 (31%), Gaps = 74/345 (21%)
Query: 100 KHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
+ EV VK+ + + +D+ I P G E G + VGS V L GD V
Sbjct: 25 QDEVRVKIASSGLCGSDLPRIFKNGAHYY--PITLGHEFSGYIDAVGSGVDDLHPGDAVA 82
Query: 160 ---------------------PDTQHLGT-----WRNYGKFNHDVLMKVPKDI-----AL 188
+G+ + Y + +P D+ A
Sbjct: 83 CVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAF 142
Query: 189 TEISGITSNPCT----AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINI 244
E P T A+ + + VI GA G IQ A G K++
Sbjct: 143 IE-------PITVGLHAFHLAQ----GCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTA 190
Query: 245 VRNRDDIDKLK-SYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLL 300
+ DI K + KS GA F +E + + +L L G L
Sbjct: 191 I----DISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELA 246
Query: 301 RTLVSKGVMVTYGGMSREPVQIPTSAF---IFKDITLRGHWMTRWQKENKESAERKSMMN 357
+ + G + + + ++ F + K++T+ G WM N S
Sbjct: 247 VEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWM------NYSSPWPGQEWE 300
Query: 358 ELTEMMRTGKLAAPAHKFVT----LKNFQEALMNTMSIQGKSGVK 398
+ ++ KL + ++F +A+ + + K
Sbjct: 301 TASRLLTERKL--SLEPLIAHRGSFESFAQAVRDIA--RNAMPGK 341
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 80.8 bits (200), Expect = 4e-17
Identities = 65/283 (22%), Positives = 106/283 (37%), Gaps = 42/283 (14%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
L ++ + V V+ + + K V++K+ + +N D + I P + G
Sbjct: 8 LQAEKNADDVSV-HVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILG 66
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
+ G VV S+ A GD VI + LG R+ Y D L+ +P++++L E
Sbjct: 67 IDAAGTVVS--SNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKE 124
Query: 191 ISGITSNPCTA---YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
+ TA L+ V+ GA G + + G + N
Sbjct: 125 AMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN 184
Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN---------CVGGNSATN 298
R+ D YLK LGA V ISR+ AL+ VGG +
Sbjct: 185 REAAD----YLKQLGASEV--------ISREDVYDGTLKALSKQQWQGAVDPVGGKQLAS 232
Query: 299 LLRTLVSKGVMVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
LL + G + G G ++P + FI + ++L G
Sbjct: 233 LLSKIQYGGSVAVSGLTGGG-----EVPATVYPFILRGVSLLG 270
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 83.0 bits (205), Expect = 4e-17
Identities = 48/310 (15%), Positives = 92/310 (29%), Gaps = 22/310 (7%)
Query: 85 LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
+R V + + + +N D+ G ++PG + +
Sbjct: 1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSP----DSIPGKWLTRDCML 1599
Query: 145 VGSDVSSLAVGDHV--IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAY 202
A G V + + L T +VP L E + + TAY
Sbjct: 1600 GMEFSGRDASGRRVMGMVPAEGLAT---SVLLLQHATWEVPSTWTLEEAASVPIVYTTAY 1656
Query: 203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 262
L + PG+ V+ + + GQ I IA G + V + + L++ L
Sbjct: 1657 YSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLD 1716
Query: 263 ADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS 316
E+ + + + L LN + +R L G + G
Sbjct: 1717 ETCFANSRDTSFEQHVLRHTAGKGV---DLVLNSLAEEKLQASVRCLAQHGRFLEIGKFD 1773
Query: 317 -REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKF 375
+ + F K++T H + + A + + L ++ G +
Sbjct: 1774 LSNNHALGMAVF-LKNVTF--HGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTV 1830
Query: 376 VTLKNFQEAL 385
+ A
Sbjct: 1831 FPRTKVEAAF 1840
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 75.7 bits (187), Expect = 3e-15
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 82 GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
G PL + +E + + HEV +K++ V D T+ G P + P + G G G
Sbjct: 16 GKPLSIEEIE---VAPPKAHEVRIKIIATAVCHTDAYTLSGADP-EGCFPVILGHLGAGI 71
Query: 142 VVEVGSDVSSLAVGDHVIP 160
V VG V+ L GD VIP
Sbjct: 72 VESVGEGVTKLKAGDTVIP 90
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 75.4 bits (186), Expect = 3e-15
Identities = 61/283 (21%), Positives = 106/283 (37%), Gaps = 42/283 (14%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
V N+ T V+ +++ + + +V+V++ + VN D I T P VPG
Sbjct: 7 FVVNKTETEFTA-GVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPG 65
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
+ G VV S GD VI +G Y + + + L+ +PK + L E
Sbjct: 66 IDLAGVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKE 123
Query: 191 ISGITSNPCTA---YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
I + TA L+++ V+ GA G + + G
Sbjct: 124 AMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK 183
Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN---------CVGGNSATN 298
+ D YL+ LGA V ++R+ + + L+ VGG +
Sbjct: 184 AAEHD----YLRVLGAKEV--------LAREDVMAERIRPLDKQRWAAAVDPVGGRTLAT 231
Query: 299 LLRTLVSKGVMVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
+L + G + G G ++PT+ FI + ++L G
Sbjct: 232 VLSRMRYGGAVAVSGLTGGA-----EVPTTVHPFILRGVSLLG 269
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 75.0 bits (185), Expect = 5e-15
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 82 GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
PL + T+ + + HEV +K+L + + +D + ++ + P K P + G E VG
Sbjct: 19 HKPLSLETIT---VAPPKAHEVRIKILASGICGSDSSVLKEIIPSK--FPVILGHEAVGV 73
Query: 142 VVEVGSDVSSLAVGDHVIP 160
V +G+ V+ + GD VIP
Sbjct: 74 VESIGAGVTCVKPGDKVIP 92
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 73.8 bits (182), Expect = 1e-14
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 82 GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
P + VE + + HEV +KM+ + +D + + G LP + G E G
Sbjct: 18 KKPFSIEEVE---VAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP--LPVIAGHEAAGI 72
Query: 142 VVEVGSDVSSLAVGDHVIP 160
V +G V+++ GD VIP
Sbjct: 73 VESIGEGVTTVRPGDKVIP 91
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 73.1 bits (180), Expect = 1e-14
Identities = 56/281 (19%), Positives = 98/281 (34%), Gaps = 40/281 (14%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
L+ Q +V++ + + +V V + + +N D I G I P +PG
Sbjct: 4 LILEQQDGKTLA-SVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPG 62
Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
+ G V S+ G V+ +G + D L+ +P ++
Sbjct: 63 IDFAGTVHA--SEDPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRN 120
Query: 191 ISGITSNPCTA---YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
I + TA L+D V+ GA+ G + + G + +
Sbjct: 121 AMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGR 180
Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL-------ALNCVGGNSATNLL 300
YLKSLGA+ + +SRD L A++ VG +L
Sbjct: 181 ESTHG----YLKSLGANRI--------LSRDEFAESRPLEKQLWAGAIDTVGDKVLAKVL 228
Query: 301 RTLVSKGVMVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
+ G + G G +PT+ FI +++ L+G
Sbjct: 229 AQMNYGGCVAACGLAGGF-----ALPTTVMPFILRNVRLQG 264
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 73.8 bits (182), Expect = 1e-14
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 82 GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
G+PL + +E ++ + EV ++++ V P DIN P V G E G
Sbjct: 18 GSPLCIEEIE---VSPPKACEVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGI 72
Query: 142 VVEVGSDVSSLAVGDHVIP 160
V VG V++ GD VIP
Sbjct: 73 VESVGPGVTNFKPGDKVIP 91
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 73.6 bits (181), Expect = 2e-14
Identities = 52/333 (15%), Positives = 94/333 (28%), Gaps = 78/333 (23%)
Query: 121 QGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS------LAVGDHVI--------------- 159
+YP P G E G VVE G + + +G+ V
Sbjct: 82 YILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAE 141
Query: 160 ------PDTQHLGTWRN-----YGKFNHDVLMKVPKDI------------ALTEISGITS 196
+ LG + Y K + + + +L E + +
Sbjct: 142 GFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAY 201
Query: 197 NPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS 256
N + PGD V+ G G + I +H G + + + +++
Sbjct: 202 NAVIVRGG-----GIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILS----EPSEVRR 251
Query: 257 YL-KSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNL-LRTLVSKG---- 307
L K LGAD+V T+E D + KL L G + ++ +
Sbjct: 252 NLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN 311
Query: 308 VMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
V + + + F + + G + +M +G
Sbjct: 312 ATVAIVARADAKIPLTGEVFQVRRAQIVGSQ----------GHSGHGTFPRVISLMASGM 361
Query: 368 LAAPA--HKFVTLKNFQEALMNTMSIQGKSGVK 398
+++ E + KS VK
Sbjct: 362 DMTKIISKTV-SMEEIPEYI--KRLQTDKSLVK 391
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 72.6 bits (179), Expect = 3e-14
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 82 GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
G + ++ + Q EV+VK++ + D+ YP+ LPAV G EG G
Sbjct: 16 GADFELQALK---IRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP--LPAVLGHEGSGI 70
Query: 142 VVEVGSDVSSLAVGDHVIP 160
+ +G +V+ L VGDHV+
Sbjct: 71 IEAIGPNVTELQVGDHVVL 89
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 71.8 bits (177), Expect = 4e-14
Identities = 68/356 (19%), Positives = 115/356 (32%), Gaps = 79/356 (22%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ----GVYPIKPTLP 131
L L +V E++V++ A + D++ + I+P P
Sbjct: 4 LAKLAPEEGLTLVDRPVPE---PGPGEILVRVEAASICGTDLHIWKWDAWARGRIRP--P 58
Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGT--- 167
V G E G V VG V VGDHV +TQ LG
Sbjct: 59 LVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRD 118
Query: 168 --WRNYGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
+ Y + PKD+ A+ E G + T Y S G V+
Sbjct: 119 GGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH--TVYAG-----SGVSGKSVLIT 171
Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYV-FTEEELRNISRD 278
GA G + R G I + D + + ++ + V EE+L + R
Sbjct: 172 GA-GPIGLMAAMVVRASGAGPILVS----DPNPYRLAFARPYADRLVNPLEEDLLEVVRR 226
Query: 279 ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP-TSAFIFKDITLRGH 337
+ ++ L G +A + + G G+ +P++ + + IT G
Sbjct: 227 VTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGI 286
Query: 338 WMTR----WQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNFQEAL 385
R W + T ++ +G++ +T L ++EA
Sbjct: 287 AGRRLWQTWMQ--------------GTALVYSGRV--DLSPLLTHRLPLSRYREAF 326
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 70.9 bits (174), Expect = 1e-13
Identities = 53/384 (13%), Positives = 115/384 (29%), Gaps = 78/384 (20%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI----KPTLP 131
++ ++V V+ + L+S ++ ++ + + AD + G + K
Sbjct: 4 IIVKPPNAGVQVKDVDEKKLDS--YGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVIPDT--------------QHL------------ 165
V G E +G V E + GD V+P
Sbjct: 62 LVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118
Query: 166 ---GTWRNYGKFNHDVLMKVPKDI----ALTEISGI-------TSNPCTAYRMLKDYNSL 211
G R + + L+K+PK I L + + +
Sbjct: 119 KMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGT 178
Query: 212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 271
V+ G G + R +GL+ R R+ + ++ ++ +Y +
Sbjct: 179 LNCRKVLVVGTGPI-GVLFTLLFRTYGLEVWMANR-REPTEVEQTVIEETKTNYYNSSNG 236
Query: 272 LRNISRDASIPKPKLALNCVGGNSAT--NLLRTLVSKGVMVTYG---GMSREPVQIPTSA 326
+ S+ K + ++ G + N++ L GV+ +G S
Sbjct: 237 YDKLK--DSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQE 294
Query: 327 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA-------HKFVTLK 379
+ + T+ G +K + + + K P ++
Sbjct: 295 IVHTNKTIIGLVNG-----------QKPHFQQAVVHLASWKTLYPKAAKMLITKTV-SIN 342
Query: 380 NFQEALMNTMSIQGKSGVKYYIDF 403
+ +E L + + +K I +
Sbjct: 343 DEKELL-KVLREKEHGEIKIRILW 365
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 70.7 bits (174), Expect = 1e-13
Identities = 59/317 (18%), Positives = 102/317 (32%), Gaps = 73/317 (23%)
Query: 125 PIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV-----IPD------------------ 161
P+ V G E GEV+ V V S+ VGD V +
Sbjct: 67 PMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVD 126
Query: 162 ---TQHL-GTWRNYGKFNHDVLMKVPKDIALTEISGI--TSNPCTAYRMLKDYNSLSPGD 215
T + G R Y K+ +++ + + S + + GD
Sbjct: 127 FLSTPPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEPLSVALAGLQRAG----VRLGD 181
Query: 216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF------- 267
V+ GA G + A+ G + I DID+ + + K + + V
Sbjct: 182 PVLICGA-GPIGLITMLCAKAAGACPLVIT----DIDEGRLKFAKEICPEVVTHKVERLS 236
Query: 268 TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 327
EE + I +P +AL C G S+ V G V G+ + +QIP
Sbjct: 237 AEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRA 296
Query: 328 IFKDITLRGHWMTRWQKENKESAERKSMMNE---LTEMMRTGKLAAPAHKFVT----LKN 380
+++ L+ + N ++ G + + VT L++
Sbjct: 297 SVREVDLQFQYR---------------YCNTWPRAIRLVENGLV--DLTRLVTHRFPLED 339
Query: 381 FQEALMNTMSIQGKSGV 397
+A + K+G
Sbjct: 340 ALKAF--ETASDPKTGA 354
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 68.8 bits (169), Expect = 4e-13
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 82 GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
PL + +E ++ +E+ +K++ V D+ + P V G EG G
Sbjct: 18 NKPLVIEEIE---VDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGI 73
Query: 142 VVEVGSDVSSLAVGDHVIP 160
V VG V+ G+ VIP
Sbjct: 74 VESVGPGVTEFQPGEKVIP 92
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 68.7 bits (169), Expect = 5e-13
Identities = 60/276 (21%), Positives = 97/276 (35%), Gaps = 53/276 (19%)
Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDI-------ALT 189
+ V VVE S S+ G V W + + L K+ +
Sbjct: 70 QQVARVVE--SKNSAFPAGSIV----LAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLAL 123
Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
G+ TAY L + + G+ V+ + A A G V QIA+ G K + + +
Sbjct: 124 GTIGMPGL--TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE 181
Query: 250 DIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALNC----------VGG--- 293
I YLK +G D F T L L VGG
Sbjct: 182 KIA----YLKQIGFDAAFNYKTVNSLEE----------ALKKASPDGYDCYFDNVGGEFL 227
Query: 294 NSATNLLRT---LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESA 350
N+ + ++ + G + Y M + P + I+K + + G + RWQ + +E A
Sbjct: 228 NTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKA 287
Query: 351 ERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 386
R +L + + GK+ H +N A +
Sbjct: 288 LR-----DLMKWVLEGKIQYHEHVTKGFENMPAAFI 318
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 68.4 bits (168), Expect = 6e-13
Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 52/253 (20%)
Query: 122 GVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV-----IPD--------------- 161
G + +K P V G E G V +VGS V L GD V P
Sbjct: 57 GNFIVKK--PMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSP 114
Query: 162 ------TQHL-GTWRNYGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYN 209
T G + K N K+P ++ AL E S A R
Sbjct: 115 SIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIE---PLSVGIHACRRGG--- 168
Query: 210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF- 267
++ G V+ GA G + +A+ G + + D+ + S K +GAD V
Sbjct: 169 -VTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVT----DLSATRLSKAKEIGADLVLQ 222
Query: 268 ----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 323
+ +E+ KP++ + C G ++ G + G+ E +P
Sbjct: 223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVP 282
Query: 324 TSAFIFKDITLRG 336
+++ ++G
Sbjct: 283 LLHAAIREVDIKG 295
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 66.5 bits (163), Expect = 2e-12
Identities = 55/295 (18%), Positives = 97/295 (32%), Gaps = 63/295 (21%)
Query: 88 VTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ--GVYPIKPTLPAVPGFEGVGEVVEV 145
+ +E + ++ EV+++M + +D++ + + P V G E G VV+V
Sbjct: 16 LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75
Query: 146 GSDVSSLAVGDHV-----IPD---------------------TQHL-GTWRNYGKFNHDV 178
G +V L GD V +P T G Y D
Sbjct: 76 GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADF 135
Query: 179 LMKVPKDI-----ALTEISGITSNPCT----AYRMLKDYNSLSPGDVVIQNGANSACGQN 229
K+P ++ AL E P + A R + G V+ GA G
Sbjct: 136 CHKLPDNVSLEEGALLE-------PLSVGVHACRRAG----VQLGTTVLVIGA-GPIGLV 183
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVFT-------EEELRNISRDASI 281
+ A+ +G + + K+ GAD E + R A
Sbjct: 184 SVLAAKAYGAFVV-CT----ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 238
Query: 282 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
P + ++C G + + G + GM + V +P ++I ++
Sbjct: 239 DLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKS 293
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 66.0 bits (162), Expect = 4e-12
Identities = 62/343 (18%), Positives = 110/343 (32%), Gaps = 67/343 (19%)
Query: 81 HGTP----LRVVTVENETLNSVQKHEVVVKMLVAPVNPA------DINTIQGVY--PIKP 128
G P T E + V+VK L +P + P
Sbjct: 15 SGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTP 74
Query: 129 TLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
P + G+ GV ++E S GD + + W Y
Sbjct: 75 GQP-IQGY-GVSRIIE--SGHPDYKKGDLL----WGIVAWEEYSVITPMTHAHFKIQHTD 126
Query: 189 TEIS------GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTI 242
+S G+ TAY + S G+ V + A+ A GQ V Q+A+ G +
Sbjct: 127 VPLSYYTGLLGMPGM--TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVV 184
Query: 243 NIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALNC--------- 290
+++ +D LK G D F E +L L
Sbjct: 185 GSAGSKEKVDLLK---TKFGFDDAFNYKEESDLTA----------ALKRCFPNGIDIYFE 231
Query: 291 -VGG---NSATNLLRT---LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQ 343
VGG ++ + + G++ Y ++E V ++ I+K ++G ++ +
Sbjct: 232 NVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSN-IIYKRNRIQGFVVSDFY 290
Query: 344 KENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 386
+ + + + +R GK+ L+ EAL+
Sbjct: 291 DKYSK------FLEFVLPHIREGKITYVEDVADGLEKAPEALV 327
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 61.4 bits (150), Expect = 1e-10
Identities = 67/290 (23%), Positives = 105/290 (36%), Gaps = 81/290 (27%)
Query: 101 HEVVVKMLVAPVNPADINTIQG-----VYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVG 155
+V K+L V +D+++I+ +YP+ VPG E VGEV EVGS V + VG
Sbjct: 42 EDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL------VPGHEIVGEVTEVGSKVKKVNVG 95
Query: 156 DHV-----------------------------IPDTQHLGTWRNYGKF------NHDVLM 180
D V H GT YG + N ++
Sbjct: 96 DKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTI-TYGGYSNHMVANERYII 154
Query: 181 KVPKDIALTEIS-----GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQNVIQ 232
+ P ++ L + GI T Y LK + PG +V G G ++
Sbjct: 155 RFPDNMPLDGGAPLLCAGI-----TVYSPLKYFGLDEPGKHIGIVGLGG----LGHVAVK 205
Query: 233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK-----LA 287
A+ +G K I + K + LK+ GAD +SRD +
Sbjct: 206 FAKAFGSKVTVISTSP---SKKEEALKNFGADSFL-------VSRDQEQMQAAAGTLDGI 255
Query: 288 LNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
++ V L L S G ++ G +P+++P + I + G
Sbjct: 256 IDTVSAVHPLLPLFGLLKSHGKLILV-GAPEKPLELPAFSLIAGRKIVAG 304
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 61.1 bits (149), Expect = 1e-10
Identities = 61/292 (20%), Positives = 101/292 (34%), Gaps = 71/292 (24%)
Query: 94 TLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA 153
TL +V ++++ + D++ + P VPG E VGEVVEVGSDVS
Sbjct: 28 TLRETGPEDVNIRIICCGICHTDLHQTKNDLG-MSNYPMVPGHEVVGEVVEVGSDVSKFT 86
Query: 154 VGDHV-----------------------------IPDTQHLGTWRNYGKF------NHDV 178
VGD V D G G F +
Sbjct: 87 VGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQP-TQGGFAKATVVHQKF 145
Query: 179 LMKVPKDIALTEIS-----GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQNV 230
++K+P+ +A+ + + G+ T Y L + PG ++ G G
Sbjct: 146 VVKIPEGMAVEQAAPLLCAGV-----TVYSPLSHFGLKQPGLRGGILGLGGV----GHMG 196
Query: 231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK----- 285
++IA+ G I + K + L+ LGAD I D +
Sbjct: 197 VKIAKAMGHHVTVISSSN---KKREEALQDLGADDYV-------IGSDQAKMSELADSLD 246
Query: 286 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
++ V + + L L G ++ G ++ P+Q T + + G
Sbjct: 247 YVIDTVPVHHALEPYLSLLKLDGKLILMGVIN-NPLQFLTPLLMLGRKVITG 297
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 60.7 bits (148), Expect = 2e-10
Identities = 51/283 (18%), Positives = 104/283 (36%), Gaps = 54/283 (19%)
Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS---- 192
G+G + E S ++L GD V + + W+ + + L KV + +S
Sbjct: 83 GGIGIIEE--SKHTNLTKGDFVT--SFYWP-WQTKVILDGNSLEKVDPQLVDGHLSYFLG 137
Query: 193 --GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQNVIQIARHWGL-KTINIVR 246
G+ T+ +++ ++ G +V+ +GA ACG QI G + + I
Sbjct: 138 AIGMPGL--TSLIGIQEKGHITAGSNKTMVV-SGAAGACGSVAGQIGHFLGCSRVVGICG 194
Query: 247 NRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC----------VGGNSA 296
+ L LG D N + ++ + +L +C VGGN +
Sbjct: 195 THEKCILLT---SELGFDAAI------NY-KKDNVAE-QLRESCPAGVDVYFDNVGGNIS 243
Query: 297 TNLLRTLVSKGVMVTYGGMSR----EPVQIPT-----SAFIFKDITLRGHWMTRWQKENK 347
++ + ++ G +S+ P P + ++IT + ++ + +
Sbjct: 244 DTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFE 303
Query: 348 ESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
+L++ + GKL L+N A + M+
Sbjct: 304 PGIL------QLSQWFKEGKLKIKETVINGLENMGAAFQSMMT 340
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 58.5 bits (142), Expect = 1e-09
Identities = 63/367 (17%), Positives = 105/367 (28%), Gaps = 73/367 (19%)
Query: 85 LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL--PAVPGFEGVGEV 142
V+ + E +V+ L V D I G + P V G E VG V
Sbjct: 13 PVVIEKPRPEP---ESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV 69
Query: 143 VEVGSDVSSLAVGDHVI-----------------------PDTQHL--------GTWRNY 171
V+ + L GD V+ PD + G +
Sbjct: 70 VDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEF 127
Query: 172 GKFNHDVLMKVPKDI----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG 227
L+++P+ L E IT + P + G + G
Sbjct: 128 FTSPEKYLVRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVL-GN-GSLG 185
Query: 228 QNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK 285
+ + + G + + + RD D ++ L A YV + + D +
Sbjct: 186 LLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVY-EQMD 244
Query: 286 LALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPTSAF----IFKDITLRGHWMT 340
G ++ L GV G S ++ AF + + L G
Sbjct: 245 FIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSV-- 302
Query: 341 RWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNFQEALMNTMSIQGKSG 396
E+ E+A + K VT L F+ A + +
Sbjct: 303 NSHVEHFEAA--------TVTFTKLPKW--FLEDLVTGVHPLSEFEAAFDD-----DDTT 347
Query: 397 VKYYIDF 403
+K I+F
Sbjct: 348 IKTAIEF 354
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 55.3 bits (134), Expect = 3e-09
Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 26/211 (12%)
Query: 177 DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARH 236
D+++ +P +A E + TA+ L + LSPG+ V+ + A G + IA+
Sbjct: 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61
Query: 237 WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA--------- 287
G + + K + L LG +YV SR L
Sbjct: 62 IGARIYTTAGSD---AK-REMLSRLGVEYVGD-------SRSVDFADEILELTDGYGVDV 110
Query: 288 -LNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKE 345
LN + G + ++ L G + G + +A K + + K
Sbjct: 111 VLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALA-KSASFSVVDLDLNLKL 169
Query: 346 NKESAERKSMMNELTEMMRTGKLAA-PAHKF 375
+ ++ + + + GKL P F
Sbjct: 170 QPARYRQ--LLQHILQHVADGKLEVLPVTAF 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 5e-09
Identities = 65/442 (14%), Positives = 125/442 (28%), Gaps = 136/442 (30%)
Query: 15 YQAGSLRFISSKKLVFHEFGEPAKV---VNVVEEELLKVMSTELCTYI------------ 59
++ G ++ K ++ F + V++ ++S E +I
Sbjct: 9 FETGEHQY-QYKDILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 60 ---SLLDTSARG------------FSYLANKLVYNQHGTPLRVVTVE---NETLNSVQKH 101
+LL + +L + + Q + + N Q
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-- 124
Query: 102 EVVVKMLVAPVNPADINTIQ-GVYPIKPTLP-AVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
V K V ++ + ++P + G G G+ S V +
Sbjct: 125 -VFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-M 180
Query: 160 PDTQHLGTWRNYGKFN--HDVLMKVPK-----DIALTEISGITSNP-------CTAYRML 205
W N N VL + K D T S +SN R L
Sbjct: 181 DFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 206 ---KDY-NSLSPGDVVIQNGANSACGQNVIQIARHW-----GLKTINIVRNRDDIDKLKS 256
K Y N L +V+ N +Q A+ W K + R + D L +
Sbjct: 238 LKSKPYENCL----LVLLN----------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 257 ----YLKSLGADYVFTEEELRNI------SRDASIPK------PKLALNCVGG------- 293
++ T +E++++ R +P+ P L+ +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLA 342
Query: 294 ------NSATNLLRTLVSKGVMV--------TYGGMS--REPVQIPTSAFIFKDITLRGH 337
+ + L T++ + V + +S IPT L
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-------LLSLI 395
Query: 338 WMTRWQKENKESAERKSMMNEL 359
W + ++ ++N+L
Sbjct: 396 W------FDVIKSDVMVVVNKL 411
Score = 52.5 bits (125), Expect = 2e-07
Identities = 61/404 (15%), Positives = 120/404 (29%), Gaps = 109/404 (26%)
Query: 44 EEELLKVMSTELCT-----YISLLDTSARGF-------SYLANKLVYNQHGTPLRVVTVE 91
E +L+++ L + S D S+ + L L + L V
Sbjct: 195 PETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249
Query: 92 NETLNSVQKHEVV------VKMLVAPVNPADINTIQGVYPIKPTL-PAVPGFEGVGEVVE 144
L +VQ + K+L+ + + +L EV
Sbjct: 250 ---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKS 305
Query: 145 -----VGSDVSSL---AVGDH-----VIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALT 189
+ L + + +I ++ L TW N+ N D LT
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---------KLT 356
Query: 190 EISGITSNPCTAYRMLKDYNSLS--PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
I + N K ++ LS P I ++ + W + V
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--------TILLSLI--WFDVIKSDV-- 404
Query: 248 RDDIDKL--KSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
++KL S ++ + + + +I + + L R++V
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEY----------ALHRSIVD 451
Query: 306 KGVMVTYGGM----SREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE 361
Y S + + + + I GH + +N E ER ++ +
Sbjct: 452 H-----YNIPKTFDSDDLIPPYLDQYFYSHI---GHHL-----KNIEHPERMTLFRMVFL 498
Query: 362 MMR--TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF 403
R K+ + T N +++NT+ +K+Y +
Sbjct: 499 DFRFLEQKIRHDS----TAWNASGSILNTL-----QQLKFYKPY 533
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 55.3 bits (134), Expect = 1e-08
Identities = 59/366 (16%), Positives = 102/366 (27%), Gaps = 93/366 (25%)
Query: 76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG-VYPIKPTLPAVP 134
G + + E + +V+ L +DI+T+ + +
Sbjct: 4 FAMLSIGK-VGWIEKEKPAPGP---FDAIVRPLAVAPCTSDIHTVFEGAIGERH--NMIL 57
Query: 135 GFEGVGEVVEVGSDVSSLAVGDHV-----IPD--------------TQHLGTWRNYGKFN 175
G E VGEVVEVGS+V GD V PD L W+ +
Sbjct: 58 GHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD 117
Query: 176 H-----------DV-LMKVPKDI----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQ 219
D+ L +PK+I A+ I + + T + + ++ GD V
Sbjct: 118 GVFGEFFHVNDADMNLAHLPKEIPLEAAVM-IPDMMT---TGF-HGAELANIKLGDTVCV 172
Query: 220 NGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL---KSLGADYVFTEEELRNIS 276
G G + A H G I + K GA + + +
Sbjct: 173 IGI-GPVGLMSVAGANHLGAGRI-FA-----VGSRKHCCDIALEYGATDIINYKNGDIVE 225
Query: 277 R----------DASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT----YGGMSREPVQI 322
+ D + G ++ G + G +
Sbjct: 226 QILKATDGKGVDK-------VVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPR 278
Query: 323 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA----HKFVTL 378
+ G R M L +++ ++ P+ H F
Sbjct: 279 SEWGVGMGHKHIHGGLC---------PGGRLR-MERLIDLVFYKRV-DPSKLVTHVFRGF 327
Query: 379 KNFQEA 384
N ++A
Sbjct: 328 DNIEKA 333
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 53.0 bits (128), Expect = 6e-08
Identities = 51/299 (17%), Positives = 82/299 (27%), Gaps = 92/299 (30%)
Query: 98 VQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDH 157
++V +++ V +D++ ++ + P VPG E VG VV VG V A GD
Sbjct: 45 PGPNDVKIEIAYCGVCHSDLHQVRSEWA-GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDL 103
Query: 158 V-----------------------------IPDTQHLGTWRNYGKF------NHDVLMKV 182
V G + + ++++
Sbjct: 104 VGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRI 163
Query: 183 PKDIALTEIS------GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI----- 231
GI T Y L+ + PG V V+
Sbjct: 164 RHPQEQLAAVAPLLCAGI-----TTYSPLRHWQ-AGPGKKV-----------GVVGIGGL 206
Query: 232 -----QIARHWGLKTINIVRN---RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK 283
++A G + + R+ K+LGAD V SR+A
Sbjct: 207 GHMGIKLAHAMGAHVVAFTTSEAKREAA-------KALGADEVV-------NSRNADEMA 252
Query: 284 PK-----LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
LN V + + L G M G + I K + G
Sbjct: 253 AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG 311
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 51.4 bits (124), Expect = 2e-07
Identities = 49/295 (16%), Positives = 96/295 (32%), Gaps = 79/295 (26%)
Query: 94 TLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA 153
+ ++V +V++ +L A + +DI++ + + P +PG E G + EVG V
Sbjct: 23 SRHAVGPRDVLIDILYAGICHSDIHSAYSEWK-EGIYPMIPGHEIAGIIKEVGKGVKKFK 81
Query: 154 VGDHV-------------------------------IPDTQHLGTWRNYGKF------NH 176
+GD V D+ H + G + +
Sbjct: 82 IGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNE-PHMGGYSNNIVVDE 140
Query: 177 DVLMKVPKDIALTEIS-----GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQ 228
+ ++ V K+ L +++ GI T Y LK ++ G V G G
Sbjct: 141 NYVISVDKNAPLEKVAPLLCAGI-----TTYSPLKFSK-VTKGTKVGVAGFGG----LGS 190
Query: 229 NVIQIARHWGLKTINIVRN---RDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKP 284
++ A G + RN + D S+G + ++ + D
Sbjct: 191 MAVKYAVAMGAEVSVFARNEHKKQDA-------LSMGVKHFYTDPKQCKE-ELD------ 236
Query: 285 KLALNCVGGNSATN-LLRTLVSKGVMVTYG--GMSREPVQIPTSAFIFKDITLRG 336
++ + + L+ L G + G + PV + + G
Sbjct: 237 -FIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYG 290
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 51.1 bits (123), Expect = 3e-07
Identities = 70/380 (18%), Positives = 119/380 (31%), Gaps = 118/380 (31%)
Query: 86 RVVTVENETL---NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEV 142
RV TV L N +H V++K++ + +D + +G + + V G E GEV
Sbjct: 15 RVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GHVLGHEITGEV 72
Query: 143 VEVGSDVSSLAVGDHV-IP-------------------DTQHLGTWRNYGKFNHDV---- 178
VE GSDV + +GD V +P + + + G F D+
Sbjct: 73 VEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWS 132
Query: 179 ---------------LMKVPKDIA-------LTEISGITSNPCTAYRMLKDYNSLSPGDV 216
L+K LT IS I T + + PG
Sbjct: 133 GGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDIL---PTGF-HGCVSAGVKPGSH 188
Query: 217 VIQNGANSACGQ------------NVI---------QIARHWGLKTINIVRNRDDIDKLK 255
V GA G+ VI ++ G +TI++ + D++
Sbjct: 189 VYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQID 247
Query: 256 SYLKSLGADYVFTE---EELRNISRDASIPKPKLALNCVGGNSATNLLR---TLVSKGVM 309
L D + E + +A+ P AL NS +++R + G+
Sbjct: 248 QILGKPEVDCGV-DAVGFEAHGLGDEANTETPNGAL-----NSLFDVVRAGGAIGIPGI- 300
Query: 310 VTYGGMSREP---------VQIPTSAFIFKDITLRG---HWMTRWQKENKESAERKSMMN 357
Y G +P + + K I + +T +
Sbjct: 301 --YVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP-VTNY-------------NR 344
Query: 358 ELTEMMRTGKLAAPAHKFVT 377
LTE + ++ +
Sbjct: 345 HLTEAILWDQMPYLSKVMNI 364
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 47.7 bits (114), Expect = 4e-06
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 76 LVYNQHGT-PLRVVTVEN----ETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
+VY G+ + V ++ + +H V++K++ + +D + ++G +
Sbjct: 6 VVY--LGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV-- 61
Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
V G E GEV+E G DV +L +GD V
Sbjct: 62 GLVLGHEITGEVIEKGRDVENLQIGDLVS 90
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 44.1 bits (105), Expect = 4e-05
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 116 DINTIQG-----VYPIKPTLPAVPGFEGVGEVVEVGSDVSS-LAVGDHV 158
DI+ G P+ V G E VG+VV++G +S L VG V
Sbjct: 49 DIHCAAGHWGNMKMPL------VVGHEIVGKVVKLGPKSNSGLKVGQRV 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.002
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 23/50 (46%)
Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSAT 297
+ + KL++ LK L AD D++ P LA+ AT
Sbjct: 19 KQALKKLQASLK-LYAD-------------DSA---PALAIK------AT 45
Score = 32.6 bits (73), Expect = 0.094
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 96 NSVQKHEVVVKMLVAPVN-PA-DIN-TIQ 121
+++K + +K L A + PA I T++
Sbjct: 20 QALKKLQASLK-LYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 42/284 (14%), Positives = 86/284 (30%), Gaps = 89/284 (31%)
Query: 18 GSLR--FISSKKLVFH------EF----GEPAKVVNVVEE-----ELL---------KVM 51
GSL + F +F EP + +E EL+ V
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 52 STELCTYISLLDTSARGF--SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVK--- 106
+++ + +L+ F YL + H + E ++ K + ++K
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGN---DIHAL---AAKLLQENDTTLVKTKELIKNYI 127
Query: 107 ----MLVAPVNP--------------ADINTI---QG-----------VYPIKPTLPAVP 134
M P + A + I QG +Y L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL---- 183
Query: 135 GFEGVGEVVEVGSD-----VSSLAVGDHVIPDTQHLGTW-RNYGKF-NHDVLMKVPKDIA 187
VG++++ ++ + + + V ++ W N + D L+ +P I+
Sbjct: 184 ----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--IS 237
Query: 188 LTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI 231
I G+ Y + +PG++ + Q ++
Sbjct: 238 CPLI-GVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Score = 34.6 bits (79), Expect = 0.074
Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 59/152 (38%)
Query: 17 AGSLRFISSKKLVFH------------EFGE---------PAKVVNVVEEELLKVMSTEL 55
A + S ++VF+ E G P +V +E L+ +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ----YV 1829
Query: 56 CTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENE------TLNSVQKHEVVVKMLV 109
+ + N YN VEN+ L ++ + V +L
Sbjct: 1830 VERVG---KRTGWLVEIVN---YN----------VENQQYVAAGDLRAL---DTVTNVL- 1869
Query: 110 APVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
+ +Q + I+ L E V
Sbjct: 1870 ------NFIKLQKIDIIE--LQKSLSLEEVEG 1893
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 33.4 bits (77), Expect = 0.10
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 40/141 (28%)
Query: 251 IDKLKSYLKSLGADYVF-----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
I++ ++Y++ GA+ +F R + ++ P LA G + L S
Sbjct: 170 IERAQAYVE-AGAEMLFPEAITELAMYRQFAD--AVQVPILANITEFGATPLFTTDELRS 226
Query: 306 KGV-MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR 364
V M Y P SAF A ++ + + +
Sbjct: 227 AHVAMALY----------PLSAF---------------------RAMNRAAEHVYNVLRQ 255
Query: 365 TGKLAAPAHKFVTLKNFQEAL 385
G + T E++
Sbjct: 256 EGTQKSVIDTMQTRNELYESI 276
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold,
reduction of to arsenite, oxidoreductase; 2.20A
{Corynebacterium glutamicum}
Length = 213
Score = 32.8 bits (75), Expect = 0.13
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
Query: 215 DVVIQNGANSAC----GQNVIQIARHWGL-----KTINIVRN-RDDID-KLKSYLKSL 261
D VI G C G++ + W L + + ++ ++ID +++ KS+
Sbjct: 155 DYVITMGCGDVCPMYPGKHYL----DWELADPSDEGEDKIQEIIEEIDGRIRELWKSI 208
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 32.0 bits (73), Expect = 0.35
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 232 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASI 281
+ +G+ ++ K+ + L+ LG + + T + D +I
Sbjct: 113 ALGDAFGMPVGSVT-----TGKMLAALQKLGFAHCWDT-----EFTADVTI 153
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 31.5 bits (71), Expect = 0.58
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASI 281
+ IA GL +L L+ LG D VF T D +I
Sbjct: 54 AVRVAIAETLGLAPGATT-----PKQLAEGLRRLGFDEVFDT-----LFGADLTI 98
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base
excision, methylation, ALK hydrolase; 1.80A {Escherichia
coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A*
3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A*
3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Length = 282
Score = 30.5 bits (69), Expect = 0.78
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 187 ALTEISGITSNPCTA--YRM--LKDYNSLSPGDVVIQNGANSACGQNVIQIARHW 237
L GI TA + + + + P D +I+ + + A W
Sbjct: 208 TLQTFPGI--GRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERW 260
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.3 bits (66), Expect = 1.6
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 230 VIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 271
++ + + I D ++ L G D F
Sbjct: 122 ALEQLQRRNYKGQIAAIAEYPDQLEGLLE----SGVDAAFNIYS 161
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 28.1 bits (63), Expect = 6.2
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF 267
I + + V K+ + L+ LG D +F
Sbjct: 232 SVRASIGELFNMGFGVDV-----TGKIYTALRQLGFDKIF 266
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,049,434
Number of extensions: 367143
Number of successful extensions: 1300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1174
Number of HSP's successfully gapped: 102
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)