BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2961
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 131/191 (68%), Gaps = 8/191 (4%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
ML D+ L PGD VIQN +NS GQ VIQIA GL+TIN+VR+R DI KL LKSLGA
Sbjct: 145 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 204
Query: 61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
++V TEEELR N +D +P+P+LALNCVGG S+T LLR L G MVTYGGM+++
Sbjct: 205 EHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ 262
Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
PV S IFKD+ LRG W+++W+K++ + K ++ L +++R G+L APA V L
Sbjct: 263 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSQVPL 321
Query: 176 KNFQEALMNTM 186
+++Q AL +M
Sbjct: 322 QDYQSALEASM 332
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 131/191 (68%), Gaps = 8/191 (4%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
ML D+ L PGD VIQN +NS GQ VIQIA GL+TIN+VR+R DI KL LKSLGA
Sbjct: 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 217
Query: 61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
++V TEEELR N +D +P+P+LALNCVGG S+T LLR L G MVTYGGM+++
Sbjct: 218 EHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ 275
Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
PV S IFKD+ LRG W+++W+K++ + K ++ L +++R G+L APA V L
Sbjct: 276 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSQVPL 334
Query: 176 KNFQEALMNTM 186
+++Q AL +M
Sbjct: 335 QDYQSALEASM 345
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 105/176 (59%), Gaps = 15/176 (8%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 179 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 238
Query: 60 ADYVFTEEELRNISRD----------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 109
A V TE++ N SR+ S + KLALNCVGG S+T + R L + G+M+TY
Sbjct: 239 ATQVITEDQ--NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTY 296
Query: 110 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
GGMS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GKL
Sbjct: 297 GGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 350
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 105/176 (59%), Gaps = 15/176 (8%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60 ADYVFTEEELRNISRD----------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 109
A V TE++ N SR+ S + KLALNCVGG S+T + R L + G+M+TY
Sbjct: 217 ATQVITEDQ--NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTY 274
Query: 110 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
GGMS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GKL
Sbjct: 275 GGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 328
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 105/176 (59%), Gaps = 15/176 (8%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60 ADYVFTEEELRNISRD----------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 109
A V TE++ N SR+ S + KLALNCVGG S+T + R L + G+M+TY
Sbjct: 217 ATQVITEDQ--NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTY 274
Query: 110 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
GGMS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GKL
Sbjct: 275 GGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 328
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60 ADYVFTEEELRNISRDASIPK--------PKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
A V TE++ + +I + KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 217 ATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 276
Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
MS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GKL
Sbjct: 277 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 328
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 179 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 238
Query: 60 ADYVFTEEELRNISRDASIPK--------PKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
A V TE++ + +I + KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 239 ATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 298
Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
MS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GKL
Sbjct: 299 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 350
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 34/193 (17%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT----- 65
G+ V+ + A A G V QIA+ G K + + + I +YLK +G D F
Sbjct: 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI----AYLKQIGFDAAFNYKTVN 201
Query: 66 --EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSK----------GVMVTYGGMS 113
EE L+ S D +C N L T++S+ G + Y M
Sbjct: 202 SLEEALKKASPDG--------YDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMD 253
Query: 114 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFV 173
+ P + I+K + + G + RWQ + +E A R +L + + GK+ H
Sbjct: 254 QLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALR-----DLMKWVLEGKIQYHEHVTK 308
Query: 174 TLKNFQEALMNTM 186
+N A + +
Sbjct: 309 GFENMPAAFIEML 321
>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase
(Mll3093) From Mesorhizobium Loti At 1.71 A Resolution
Length = 349
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 25/144 (17%)
Query: 14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----- 68
V GA+ C + +I +A+ G + I VR + I + LK +GA +V E+
Sbjct: 169 VXTAGASQLC-KLIIGLAKEEGFRPIVTVRRDEQI----ALLKDIGAAHVLNEKAPDFEA 223
Query: 69 -LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPT 121
LR + + +P++ L+ V G A+ + + + YG + REP Q+
Sbjct: 224 TLREVXKAE---QPRIFLDAVTGPLASAIFNAXPKRARWIIYGRLDPDATVIREPGQL-- 278
Query: 122 SAFIFKDITLRGHWMTRWQKENKE 145
IF+ + G W++ W ++ KE
Sbjct: 279 ---IFQHKHIEGFWLSEWXRQFKE 299
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE 67
G+ V+ N A A G V QIA+ G K + V + + + +YL+ LG D VF T E
Sbjct: 141 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKV----AYLQKLGFDVVFNYKTVE 196
Query: 68 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPT 121
L + AS + VGG + ++ + G + G +S P P
Sbjct: 197 SLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPP 256
Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
I++++ + + RWQ + ++ A + +L + + GK+ + +N A
Sbjct: 257 EIVIYQELRMEAFVVYRWQGDARQKA-----LKDLLKWVLEGKIQYKEYIIEGFENMPAA 311
Query: 182 LMNTM 186
M +
Sbjct: 312 FMGML 316
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE 67
G+ V+ N A A G V QIA+ G K + V + + + +YL+ LG D VF T E
Sbjct: 162 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKV----AYLQKLGFDVVFNYKTVE 217
Query: 68 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPT 121
L + AS + VGG + ++ + G + G +S P P
Sbjct: 218 SLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPP 277
Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
I++++ + + RWQ + ++ A + +L + + GK+ + +N A
Sbjct: 278 EIVIYQELRMEAFVVYRWQGDARQKA-----LKDLLKWVLEGKIQYKEYIIEGFENMPAA 332
Query: 182 LMNTM 186
M +
Sbjct: 333 FMGML 337
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 29 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-----LRNISRDASIPKPKL 83
QIA+ G K I +V NR ++KS+GAD V EE +R + A + +
Sbjct: 178 QIAKGMGAKVIAVV-NRT---AATEFVKSVGADIVLPLEEGWAKAVREATGGAGV---DM 230
Query: 84 ALNCVGGNSATNLLRTLVSKGVMVTYG 110
++ +GG + + +RTL S+G ++ G
Sbjct: 231 VVDPIGGPAFDDAVRTLASEGRLLVVG 257
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 10/185 (5%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR 70
G++V+ GA+ G + + G + + V R+ + YLKSLGA V +E
Sbjct: 169 GEIVV-TGASGGVGSTAVALLHKLGYQVVA-VSGRESTHE---YLKSLGASRVLPRDEFA 223
Query: 71 NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDIT 130
SR A++ VG +L + G + G + FI +++
Sbjct: 224 E-SRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVR 282
Query: 131 LRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQG 190
L+G E + A ++ ++ +L E T AA NF EA++N IQG
Sbjct: 283 LQGVDSVMTPPERRAQAWQR-LVADLPESFYT--QAAKEISLSEAPNFAEAIINN-QIQG 338
Query: 191 KSGVK 195
++ VK
Sbjct: 339 RTLVK 343
>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From
Bacillus Thuringiensis
Length = 340
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-- 64
+L DV++ N SA G Q+++ + I + RN +K L LGA YV
Sbjct: 141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRN----NKHTEELLRLGAAYVIDT 196
Query: 65 -------TEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG---GMS 113
T EL N I DA A++ +GG L +L G +T G G+
Sbjct: 197 STAPLYETVMELTNGIGADA-------AIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQ 249
Query: 114 REPVQIPTSAFIFKDITLRGHW-----MTRWQK 141
+I T A + +I HW +WQ+
Sbjct: 250 VNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQE 282
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIV--------------------RNRDDIDK 50
G+ V+ +GA+ G QIAR +GLK + R + IDK
Sbjct: 171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDK 230
Query: 51 LKSYLKSLGADYVFTEEELRNISRDASI 78
+K Y+ G D + N+S+D S+
Sbjct: 231 IKKYVGEKGIDIIIEMLANVNLSKDLSL 258
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+L ++ GD V+ + S G IQ+ R G + ++ + + + G
Sbjct: 153 LLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGF 212
Query: 61 DYV---FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
+Y F+E L+ ++ A + L L+C+GG+ + L G V YG M +
Sbjct: 213 NYKKEDFSEATLK-FTKGAGV---NLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDI 268
Query: 118 QIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 160
P S +FK RG +T + ++++ ++ ++N TE +
Sbjct: 269 NGPLFSKLLFK----RGSLITSLLR-SRDNKYKQMLVNAFTEQI 307
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+L ++ GD V+ + S G IQ+ R G + ++ + + + G
Sbjct: 137 LLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGF 196
Query: 61 DYV---FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
+Y F+E L+ ++ A + L L+C+GG+ + L G V YG M +
Sbjct: 197 NYKKEDFSEATLK-FTKGAGV---NLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDI 252
Query: 118 QIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 160
P S +FK RG +T + ++++ ++ ++N TE +
Sbjct: 253 NGPLFSKLLFK----RGSLITSLLR-SRDNKYKQMLVNAFTEQI 291
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+L + + PGD V+ + A G ++ ARH G I V + + + LG
Sbjct: 136 LLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAET----ARKLGC 191
Query: 61 DYV--FTEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMS--RE 115
+ ++ ++ + R+ + K + + +G ++ L L +G+ YG S +
Sbjct: 192 HHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVAD 251
Query: 116 PVQIPTSAFIFKDITLRGH-WMTR 138
P++ + +D+ +RG ++TR
Sbjct: 252 PIR------VVEDLGVRGSLFITR 269
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
M+ D + PGD V+ A S IQIA+ +G + I + D + + K+LGA
Sbjct: 157 MVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRR----AKALGA 212
Query: 61 D 61
D
Sbjct: 213 D 213
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR 70
GDVV+ + G IQ+A+ G I R+ ++LK+LGA+ E
Sbjct: 153 GDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRN-----HAFLKALGAEQCINYHE-E 206
Query: 71 NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT 108
+ S P + ++ VGG+ + L G +V+
Sbjct: 207 DFLLAISTPVDAV-IDLVGGDVGIQSIDCLKETGCIVS 243
>pdb|3IUP|A Chain A, Crystal Structure Of Putative Nadph:quinone Oxidoreductase
(Yp_296108.1) From Ralstonia Eutropha Jmp134 At 1.70 A
Resolution
pdb|3IUP|B Chain B, Crystal Structure Of Putative Nadph:quinone Oxidoreductase
(Yp_296108.1) From Ralstonia Eutropha Jmp134 At 1.70 A
Resolution
Length = 379
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS 53
++ A S GQ + QI G+K +NIVR ++ D LK+
Sbjct: 174 ALVHTAAASNLGQXLNQICLKDGIKLVNIVRKQEQADLLKA 214
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 51 LKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 110
L S+LK L + EL D S+P P + ++CV G +L L +V YG
Sbjct: 87 LDSWLKLL-------DTELARQQEDPSVPPPTIGVHCVAGLGRAPILVAL----ALVEYG 135
Query: 111 GMS 113
+S
Sbjct: 136 NVS 138
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 15/193 (7%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L D G+ V+ +GA A G QIAR G + + I + L L GA
Sbjct: 141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAI 200
Query: 62 YVFTEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMS----REP 116
E+ + R+ PK + + VGG +L + K +V G +S +E
Sbjct: 201 DYKNEDLAAGLKREC--PKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEA 258
Query: 117 VQIPTS--AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 174
V+ P + + + + G + + + E + E+ + GKL +
Sbjct: 259 VRGPANYLSLLVNRARMEGMVVMDYAQRFPEG------LKEMATWLAEGKLQSREDIVEG 312
Query: 175 LKNFQEALMNTMS 187
L+ F E L+ S
Sbjct: 313 LETFPETLLKLFS 325
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 67 EELRNISRDASIP---KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
E+LR ISRDA +P +P G +S + R L + TY G+ V +P
Sbjct: 474 EQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKN-----TYAGLQLVVVILPGKT 528
Query: 124 FIFKDI 129
++ ++
Sbjct: 529 PVYAEV 534
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 67 EELRNISRDASIP---KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
E+LR ISRDA +P +P G +S + R L + TY G+ V +P
Sbjct: 472 EQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKN-----TYAGLQLVVVILPGKT 526
Query: 124 FIFKDI 129
++ ++
Sbjct: 527 PVYAEV 532
>pdb|4F0W|A Chain A, Crystal Structure Of Type Effector Tse1 C30a Mutant From
Pseudomonas Aeruginousa
Length = 188
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 144 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 179
>pdb|4F0V|A Chain A, Crystal Structure Of Type Effector Tse1 From Pseudomonas
Aeruginousa
Length = 188
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 144 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 179
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 67 EELRNISRDASIP---KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
E+LR ISRDA +P +P G +S + R L + TY G+ V +P
Sbjct: 35 EQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKN-----TYAGLQLVVVILPGKT 89
Query: 124 FIFKDI 129
++ ++
Sbjct: 90 PVYAEV 95
>pdb|4FGE|A Chain A, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
pdb|4FGE|B Chain B, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
pdb|4FGE|C Chain C, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
pdb|4FGE|D Chain D, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa
Length = 165
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 110 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 145
>pdb|4F4M|A Chain A, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
pdb|4F4M|B Chain B, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
pdb|4F4M|C Chain C, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
pdb|4F4M|D Chain D, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 (C30a) From Pseudomonas Aeruginosa
Length = 160
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 110 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 145
>pdb|3VPJ|A Chain A, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|B Chain B, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|C Chain C, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|D Chain D, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
Length = 174
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 130 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 165
>pdb|4EOB|A Chain A, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
pdb|4EOB|B Chain B, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
pdb|4EOB|C Chain C, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
pdb|4EOB|D Chain D, Structure Of The Type Vi Peptidoglycan Amidase Effector
Tse1 From Pseudomonas Aeruginosa
Length = 162
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
CG + + GLK++ V NR D D+L Y+ SL +
Sbjct: 110 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLAS 147
>pdb|4EQA|A Chain A, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
pdb|4EQA|B Chain B, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
Length = 146
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 108 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 143
>pdb|4FGD|A Chain A, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGD|B Chain B, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGD|C Chain C, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGD|D Chain D, Structure Of The Effector Protein Tse1 From Pseudomonas
Aeruginosa, Selenomethionine Variant
pdb|4FGI|A Chain A, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|C Chain C, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|E Chain E, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|G Chain G, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
Length = 165
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 110 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 145
>pdb|3VPI|A Chain A, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa
Length = 174
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 130 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 165
>pdb|4EQ8|A Chain A, Crystal Structure Of Pa1844 From Pseudomonas Aeruginosa
Pao1
Length = 162
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 23 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
CG + + GLK++ V NR D D+L Y+ SL
Sbjct: 110 CGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSL 145
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 35 GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA-SIPKPKLALNCVGGNSA 93
G + NR+ D YLK LGA V + E++ + + A S + + A++ VGG
Sbjct: 175 GYDVVASTGNREAAD----YLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQL 230
Query: 94 TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 133
+LL + G + G V FI + ++L G
Sbjct: 231 ASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLG 270
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG 35
L D L PG+ ++ + A G IQ+ARH G
Sbjct: 337 LVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLG 370
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 16/188 (8%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR 70
G+VV+ GA+ G + + G + + V R+ YLKSLGA+ + + +E
Sbjct: 148 GEVVV-TGASGGVGSTAVALLHKLGYQ-VAAVSGREST---HGYLKSLGANRILSRDEFA 202
Query: 71 NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDIT 130
SR A++ VG +L G + G + FI +++
Sbjct: 203 E-SRPLEKQLWAGAIDTVGDKVLAKVLAQXNYGGCVAACGLAGGFALPTTVXPFILRNVR 261
Query: 131 LRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN---FQEALMNTMS 187
L+G + A + ++ +L E A A +TL + F +A++N
Sbjct: 262 LQGVDSVXTPPARRAEAWAR-LVKDLPE-----SFYAQAATEITLADAPKFADAIINNQ- 314
Query: 188 IQGKSGVK 195
+QG++ VK
Sbjct: 315 VQGRTLVK 322
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 89 GGNSATNLLRTLVSKGVMVTYGGMSR 114
GG+ LL++L+SKGV + G+S+
Sbjct: 299 GGSDEKELLKSLISKGVAYHHAGLSK 324
>pdb|3GYT|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 4
Length = 244
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 43 RNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLL 97
++++ ++KL +SL Y+++ + R ASIPK +AL V N+ T L
Sbjct: 170 QDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVTLFL 224
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL 69
PG+ V+ A A G +Q+AR GL+ + + + + +LGA+ T E+
Sbjct: 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL----ALPLALGAEEAATYAEV 180
Query: 70 RNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDI 129
R + L L V G L L G +V G E IP + +++
Sbjct: 181 PE--RAKAWGGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNL 237
Query: 130 TLRGHWMTRWQKEN 143
+ G W+T +E
Sbjct: 238 AVLGFWLTPLLREG 251
>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|B Chain B, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|C Chain C, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|D Chain D, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A10|A Chain A, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|B Chain B, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|C Chain C, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|D Chain D, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp
Length = 447
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL 69
GD+V+ GA+ G IQ ++ G + +V + + ++ +++LG D V EL
Sbjct: 221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA----QKEAAVRALGCDLVINRAEL 275
>pdb|3GYU|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 7
Length = 244
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 43 RNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLL 97
++++ ++KL +SL Y+++ + R ASIPK +AL V N+ T L
Sbjct: 170 QDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVTLFL 224
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 26 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL 85
NVI I++ I++V + +D+DK LK D+ N+ RD S+ K +
Sbjct: 348 NVILISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVI 407
Query: 86 NCVG 89
+ VG
Sbjct: 408 SVVG 411
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 26 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL 85
NVI I++ I++V + +D+DK LK D+ N+ RD S+ K +
Sbjct: 347 NVILISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVI 406
Query: 86 NCVG 89
+ VG
Sbjct: 407 SVVG 410
>pdb|3E1Q|A Chain A, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|B Chain B, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|C Chain C, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|D Chain D, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|E Chain E, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|F Chain F, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|G Chain G, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|H Chain H, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|I Chain I, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|J Chain J, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|K Chain K, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron.
pdb|3E1Q|L Chain L, Crystal Structure Of W133f Variant E. Coli
Bacterioferritn With Iron
Length = 158
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 11 GDVVIQNGANSACGQNVIQIARH---------WGLKTINIVRNRDDIDKLK 52
GD + N N G ++ I ++ WGLK +N V + ID++K
Sbjct: 3 GDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMK 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,687,217
Number of Sequences: 62578
Number of extensions: 207580
Number of successful extensions: 722
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 66
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)