RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2961
(202 letters)
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 207 bits (530), Expect = 8e-67
Identities = 98/196 (50%), Positives = 129/196 (65%), Gaps = 6/196 (3%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
ML D+ L PGD VIQN +NS GQ VIQIA GL+TIN+VR+R DI KL LKSLGA
Sbjct: 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 217
Query: 61 DYVFTEEELRNISRDASI---PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
++V TEEELR P+P+LALNCVGG S+T LLR L G MVTYGGM+++PV
Sbjct: 218 EHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPV 277
Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
S IFKD+ LRG W+++W+K++ + K ++ L +++R G+L APA V L++
Sbjct: 278 VASVSLLIFKDLKLRGFWLSQWKKDHS-PDQFKELILTLCDLIRRGQLTAPACSQVPLQD 336
Query: 178 FQEALMNTMS--IQGK 191
+Q AL +M I K
Sbjct: 337 YQSALEASMKPFISSK 352
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 202 bits (515), Expect = 2e-64
Identities = 76/210 (36%), Positives = 109/210 (51%), Gaps = 16/210 (7%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60 ADYVFTEEELRNISRDASI--------PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
A V TE++ + +I + KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 217 ATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 276
Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHK 171
MS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GKL
Sbjct: 277 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE--LKTSTLNQIIAWYEEGKLTDAKSI 334
Query: 172 FVTLKNFQEAL-----MNTMSIQGKSGVKY 196
+ S GK + Y
Sbjct: 335 ETLYDGTKPLHELYQDGVANSKDGKQLITY 364
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 135 bits (341), Expect = 1e-38
Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
+ S + +I +A+ G + I VR + I LK +GA +V
Sbjct: 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA----LLKDIGAAHVLNEK 217
Query: 66 EEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI-PTSA 123
+ R+ + P++ L+ V G A+ + + + + YG + + I
Sbjct: 218 APDFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQ 277
Query: 124 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL- 182
IF+ + G W++ W ++ KE R + E + G+ + V L +
Sbjct: 278 LIFQHKHIEGFWLSEWMRQFKE--RRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVP 335
Query: 183 MNTMSIQGK 191
GK
Sbjct: 336 AELTKPNGK 344
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 119 bits (302), Expect = 5e-33
Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 13/198 (6%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+ +L DV++ N SA G Q+++ + I + RN + L LGA
Sbjct: 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTE-ELLRLGA 190
Query: 61 DYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
YV + L + + A++ +GG L +L G +T G +S V
Sbjct: 191 AYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQV 250
Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA-HKFVTLK 176
+ + W E + + L ++ +L H L
Sbjct: 251 N-WAEIVTKAKVHANIFHLRHWNDEVSP-YKWQETFRHLIRLVENEQLRFMKVHSTYELA 308
Query: 177 NFQEA---LMNTMSIQGK 191
+ + A + + +GK
Sbjct: 309 DVKAAVDVVQSAEKTKGK 326
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 85.8 bits (212), Expect = 5e-20
Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 29/201 (14%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
M++ L ++ A S GQ + QI G+K +NIVR ++ D LK+ GA
Sbjct: 163 MVETMR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADL----LKAQGA 217
Query: 61 DYV--FTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGV------------ 105
+V +A + +A + GG + T + +
Sbjct: 218 VHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGS 277
Query: 106 -----MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 160
+ YGG+ P + + + G + + + K ER + + +
Sbjct: 278 TTHKQVYLYGGLDTSPTEFNRN--FGMAWGMGGWLLFPFLQ--KIGRERANALKQRVVAE 333
Query: 161 RTGKLAAPAHKFVTLKNFQEA 181
A+ K ++L +
Sbjct: 334 LKTTFASHYSKEISLAEVLDL 354
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 72.1 bits (177), Expect = 3e-15
Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 28/207 (13%)
Query: 7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYVF 64
+ S V+ G ++A +Q+ R G I N D KS GA+ VF
Sbjct: 161 THSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFD-------LAKSRGAEEVF 213
Query: 65 --TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSK--GVMVTYGGMSREPVQIP 120
L R + + AL+C+ +T + + G V+
Sbjct: 214 DYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRK 273
Query: 121 TSAFIF--------KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKF 172
+ + T + +E ++ E + +++ G+L +
Sbjct: 274 MVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGED--LWRIAGQLVEDGRLVHHPLRV 331
Query: 173 V--TLKNFQEALMNTMSIQGK-SGVKY 196
V + ++ + + +G+ SG K
Sbjct: 332 VQGGFDHIKQGM--ELVRKGELSGEKL 356
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 65.7 bits (161), Expect = 4e-13
Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 29/194 (14%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVF-- 64
L P ++ GA G +QIA+ G I + + ++ K GADYV
Sbjct: 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE---AVE-AAKRAGADYVINA 223
Query: 65 -TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIP 120
++ L I R ++ ++ ++K VMV G+ +
Sbjct: 224 SMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV---GLFGADLHYH 280
Query: 121 TSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
+I G + + + GK+ K + L+
Sbjct: 281 APLITLSEIQFVGSLVGNQSD------------FLGIMRLAEAGKVKPMITKTMKLEEAN 328
Query: 180 EAL--MNTMSIQGK 191
EA+ + G+
Sbjct: 329 EAIDNLENFKAIGR 342
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 63.8 bits (156), Expect = 2e-12
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 9/183 (4%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L G+ V+ GA G IQIA+ G K I +V + ++KS+GAD
Sbjct: 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA---ATE-FVKSVGAD 206
Query: 62 YVF-TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI 119
V EE R+A+ + ++ +GG + + +RTL S+G ++ G + I
Sbjct: 207 IVLPLEEGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTI 266
Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
+ + ++ +L G + + + + L +++ G + P + L +
Sbjct: 267 KVNRLLLRNASLIGVAWGEFLRTHADYLYE--TQAGLEKLVAEG-MRPPVSARIPLSEGR 323
Query: 180 EAL 182
+AL
Sbjct: 324 QAL 326
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 61.5 bits (150), Expect = 1e-11
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 35/204 (17%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
LK+ LS G V+ A GQ +Q+++ I + +K +LKSLG D
Sbjct: 155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD---EKSA-FLKSLGCD 210
Query: 62 YVF--TEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMS--- 113
E + + + P+ + VGG + L +KG ++ G +S
Sbjct: 211 RPINYKTEPVGTVLKQEY---PEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ 267
Query: 114 ----REPVQIPT--SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL-- 165
PV+ T + + K +++G ++ + + + M+ L EM +G L
Sbjct: 268 TPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQA------AMSHLLEMCVSGDLVC 321
Query: 166 ------AAPAHKFVTLKNFQEALM 183
+P +F L++ A+
Sbjct: 322 EVDLGDLSPEGRFTGLESIFRAVN 345
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 60.6 bits (147), Expect = 3e-11
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 37/203 (18%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+ + GD+V+ GA+ G IQ ++ G + +V + K +++LG
Sbjct: 211 VSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA---QKEA-AVRALGC 266
Query: 61 DYVF------TEEELRNISRDASIPKPKLA--------------LNCVGGNSATNLLRTL 100
D V +++ + R KLA G + +
Sbjct: 267 DLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVA 326
Query: 101 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEM 159
G +VT G S K + G H + +
Sbjct: 327 RRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEE------------QQATNRL 374
Query: 160 MRTGKLAAPAHKFVTLKNFQEAL 182
+G + L EA
Sbjct: 375 FESGAVVPAMSAVYPLAEAAEAC 397
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 59.5 bits (145), Expect = 5e-11
Identities = 22/181 (12%), Positives = 57/181 (31%), Gaps = 27/181 (14%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
L+ V+ G + + Q+ + G + + ++ G +++
Sbjct: 140 LTKQREVLIVGFGAV-NNLLTQMLNNAGYVVDLVSASLS-----QALAAKRGVRHLYREP 193
Query: 66 EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI 125
+ + A + V +A L+ +L + G ++ + P
Sbjct: 194 SQVTQKY--FA-------IFDAVNSQNAAALVPSLKANGHIICIQD----RIPAPIDPAF 240
Query: 126 FKDITLRGHWM-TRWQKENKESAERKSM---MNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
+ I+ H + + + + + + L ++ GK+ A + EA
Sbjct: 241 TRTISY--HEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEA 298
Query: 182 L 182
L
Sbjct: 299 L 299
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 58.7 bits (143), Expect = 9e-11
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 16/183 (8%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
+ G+ V+ +GA+ G QIAR +GLK + + K + GA VF
Sbjct: 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE---EGQK-IVLQNGAHEVFNHR 223
Query: 66 EEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 124
E + + K + + + + + L L G ++ G ++I
Sbjct: 224 EVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDT 281
Query: 125 IFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 183
+ K+ ++ G + ++E ++ A L M G L L+ EA
Sbjct: 282 MAKESSIIGVTLFSSTKEEFQQYAA------ALQAGMEIGWLKPVIGSQYPLEKVAEAHE 335
Query: 184 NTM 186
N +
Sbjct: 336 NII 338
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 58.4 bits (142), Expect = 1e-10
Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 30/190 (15%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYV-- 63
+ GDVV+ + G IQ+A+ G I RN +LK+LGA+
Sbjct: 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHA-------FLKALGAEQCIN 202
Query: 64 FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
+ EE+ ++ VGG+ + L G +V+ +
Sbjct: 203 YHEEDFLLAIST----PVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTI---TAGRVIEV 255
Query: 124 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA-- 181
K G + E ++ L +++ KL + L A
Sbjct: 256 AKQKHRRAFGLLKQF-------NIEE---LHYLGKLVSEDKLRIEISRIFQLSEAVTAHE 305
Query: 182 LMNTMSIQGK 191
L+ T ++GK
Sbjct: 306 LLETGHVRGK 315
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 58.3 bits (141), Expect = 2e-10
Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 39/216 (18%)
Query: 3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY 62
++ + GD V+ GA+ G Q A G I +V + K + +++GA+
Sbjct: 221 RNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQ---KAE-ICRAMGAEA 276
Query: 63 VF--TEEELRNISRDASIPKPK------------------LALNCVGGNSATNLLRTLVS 102
+ E R + + + + G + +
Sbjct: 277 IIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRK 336
Query: 103 KGVMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMR 161
G + T S + + G H+ + E ++
Sbjct: 337 GGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYRE------------AWEANRLIA 384
Query: 162 TGKLAAPAHKFVTLKNFQEAL--MNTMSIQGKSGVK 195
G++ K +L++ +A ++ QGK GV
Sbjct: 385 KGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVL 420
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 57.2 bits (139), Expect = 3e-10
Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 29/198 (14%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
+ G V+ G G IQIA G + R D Y++ LGA +
Sbjct: 148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSD-----LEYVRDLGATPIDASR 202
Query: 68 ELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIF 126
E + + + + + L + +GG + G +V+ G + + F
Sbjct: 203 EPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGTHKL----APLSF 258
Query: 127 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL-------------AAPAHKFV 173
K T G + N+ A M+ E +++TGKL A+ V
Sbjct: 259 KQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAV 318
Query: 174 TLKNFQEALMNTMSIQGK 191
+ +GK
Sbjct: 319 ------LGRNDVPRQRGK 330
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 57.2 bits (139), Expect = 3e-10
Identities = 27/198 (13%), Positives = 63/198 (31%), Gaps = 20/198 (10%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
ML + +L G V+ + A GQ V Q+ T+ + + +K
Sbjct: 133 MLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHE----AIKDSVT 188
Query: 61 DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------- 113
+ + S + L+C+ G++ L L G + YG +
Sbjct: 189 HLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETK 248
Query: 114 ---------REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 164
+ ++ ++ + G + + + + ++ +L + K
Sbjct: 249 SFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKK 308
Query: 165 LAAPAHKFVTLKNFQEAL 182
+ L+ +EA+
Sbjct: 309 IKPVVDSLWALEEVKEAM 326
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 56.1 bits (136), Expect = 9e-10
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 16/180 (8%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-- 65
+ GD V+ A G + Q+ + G TI + + KLK K GA+Y+
Sbjct: 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE---KLK-IAKEYGAEYLINAS 201
Query: 66 ----EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
++ + + + + VG ++ L L KGV V++G S
Sbjct: 202 KEDILRQVLKFTNGKGVD---ASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSI 258
Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
+ K+ITL + + + E K +E ++ + KL +K L++++ A
Sbjct: 259 TRLSPKNITLVRPQLYGY---IADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTA 315
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 55.7 bits (135), Expect = 1e-09
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 20/186 (10%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
M+ D + PGD V+ A S IQIA+ +G + I + DKL+ K+LGA
Sbjct: 157 MVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE---DKLR-RAKALGA 212
Query: 61 DYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
D T + R + K ++ G +++ + G + G S
Sbjct: 213 DETVNYTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEG 272
Query: 118 QIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLK 176
+P + ++ +++ G M ++ S + + + GKL + + L+
Sbjct: 273 TLPFAHVFYRQLSILGSTMASK------------SRLFPILRFVEEGKLKPVVGQVLPLE 320
Query: 177 NFQEAL 182
E
Sbjct: 321 AAAEGH 326
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 54.1 bits (131), Expect = 4e-09
Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 29/184 (15%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FT 65
PG+ V+ A A G +Q+AR GL+ + +KL +LGA+ +
Sbjct: 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP---EKLA-LPLALGAEEAATYA 178
Query: 66 EEELR-------NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
E R ++ + V G L L G +V G E
Sbjct: 179 EVPERAKAWGGLDLVLE------------VRGKEVEESLGLLAHGGRLVYIGAAEGEVAP 226
Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
IP + +++ + G W+ E + L + +L
Sbjct: 227 IPPLRLMRRNLAVLGFWL-TPLLREGALVEE--ALGFLLPRL-GRELRPVVGPVFPFAEA 282
Query: 179 QEAL 182
+ A
Sbjct: 283 EAAF 286
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 52.6 bits (127), Expect = 1e-08
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 26/199 (13%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
VI GA G IQ A G K++ + DI K + KS GA F
Sbjct: 158 GCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAI----DISSEKLALAKSFGAMQTFNS 212
Query: 65 TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
+E + + +L L G L + + G + + + ++
Sbjct: 213 SEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSAT 272
Query: 124 F---IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LK 176
F + K++T+ G WM N S + ++ KL + +
Sbjct: 273 FGKILRKELTVIGSWM------NYSSPWPGQEWETASRLLTERKL--SLEPLIAHRGSFE 324
Query: 177 NFQEALMNTMSIQGKSGVK 195
+F +A+ + + K
Sbjct: 325 SFAQAVRDIA--RNAMPGK 341
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 52.2 bits (126), Expect = 2e-08
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 10/189 (5%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
L+ G+ V+ +G S G IQ+AR +G + + K + + LGA
Sbjct: 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST---GKCE-ACERLGAKRGINYR 220
Query: 66 EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAF 124
E+ + + + + L+ +G + +L G + + ++ S
Sbjct: 221 SEDFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPI 280
Query: 125 IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA--L 182
+ K +T+ G M E K A R +++E+ ++ G +A HK ++ +A L
Sbjct: 281 MVKRLTVTGSTMRPRTAEEK-RAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRL 339
Query: 183 MNTMSIQGK 191
+ S GK
Sbjct: 340 LEEGSHVGK 348
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 51.8 bits (125), Expect = 2e-08
Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 23/191 (12%)
Query: 10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE 67
G V+ GA G I +A+ G + + + D + K +GADYV EE
Sbjct: 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVS---EPSDFRRELAKKVGADYVINPFEE 222
Query: 68 ELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI- 125
++ D + + L G A V+ V+ G+ V I + I
Sbjct: 223 DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLII 282
Query: 126 FKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA---HKFVTLKNFQEAL 182
FK +T+ G + + ++++GKL HK+ ++EA
Sbjct: 283 FKALTIYGITGRHLWETWYTVS----------RLLQSGKLNLDPIITHKYKGFDKYEEAF 332
Query: 183 MNTMSIQGKSG 193
+ GK+G
Sbjct: 333 --ELMRAGKTG 341
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 51.8 bits (125), Expect = 2e-08
Identities = 38/193 (19%), Positives = 77/193 (39%), Gaps = 27/193 (13%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+L+ + PG++++ + A G Q A+ G K I V + +K + K+LGA
Sbjct: 131 LLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP---EKAA-HAKALGA 186
Query: 61 DYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 114
+ + ++ P + + VG ++ L ++ +G++V++G S
Sbjct: 187 WETIDYSHEDVAKRVLELTDGKKCP---VVYDGVGQDTWLTSLDSVAPRGLVVSFGNASG 243
Query: 115 EPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 168
+ KD TL + ++M +EL +M+ +GKL
Sbjct: 244 PVSGVNLGILAQKDSVYVTRPTLGSYANNA--------QNLQTMADELFDMLASGKLKVD 295
Query: 169 AHKFVTLKNFQEA 181
+ LK+ +A
Sbjct: 296 GIEQYALKDAAKA 308
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 51.9 bits (125), Expect = 2e-08
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 39/202 (19%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
+ GD V+ GA G + A+ G + I DID+ + + K + + V
Sbjct: 177 VRLGDPVLICGA-GPIGLITMLCAKAAGACPLVIT----DIDEGRLKFAKEICPEVVTHK 231
Query: 65 -----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI 119
EE + I +P +AL C G S+ V G V G+ + +QI
Sbjct: 232 VERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQI 291
Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE---LTEMMRTGKLAAPAHKFVT-- 174
P +++ L+ + N ++ G + + VT
Sbjct: 292 PFMRASVREVDLQFQYR---------------YCNTWPRAIRLVENGLV--DLTRLVTHR 334
Query: 175 --LKNFQEALMNTMSIQGKSGV 194
L++ +A + K+G
Sbjct: 335 FPLEDALKAF--ETASDPKTGA 354
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 51.8 bits (125), Expect = 3e-08
Identities = 33/182 (18%), Positives = 67/182 (36%), Gaps = 18/182 (9%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-- 65
+ PGD V+ + A G ++ ARH G I V +K + + LG +
Sbjct: 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE---EKAE-TARKLGCHHTINYS 198
Query: 66 ----EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS--REPVQI 119
E +R I+ + + + +G ++ L L +G+ YG S +P+++
Sbjct: 199 TQDFAEVVREITGGKGVD---VVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVADPIRV 255
Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
+ + + + + +E L + ++ G L + K L+
Sbjct: 256 VEDLGVRGSLFITRPALWHY---MSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAA 312
Query: 180 EA 181
A
Sbjct: 313 AA 314
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 50.3 bits (121), Expect = 7e-08
Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 23/187 (12%)
Query: 1 MLKDYNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
L + L GD VV+Q G +QIA+ G + I +R+ KL +LG
Sbjct: 180 ALVEKGHLRAGDRVVVQ-GT-GGVALFGLQIAKATGAEVIVTSSSRE---KLD-RAFALG 233
Query: 60 ADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
AD+ EE+ + + L GG L+ + G + G +
Sbjct: 234 ADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFE 293
Query: 117 VQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
V P + K ++G R + +L + L
Sbjct: 294 VSGPVGPLLLKSPVVQGISVGHR------------RALEDLVGAVDRLGLKPVIDMRYKF 341
Query: 176 KNFQEAL 182
EAL
Sbjct: 342 TEVPEAL 348
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 50.3 bits (121), Expect = 8e-08
Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 34/185 (18%)
Query: 8 LSPGD-VVIQNGANSACG---QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 63
L PG V+ G IQI R + I + DD D+L + +GAD
Sbjct: 169 LGPGSTAVV-----IGVGGLGHVGIQILRAVSAARV-IAVDLDD-DRLA-LAREVGADAA 220
Query: 64 F--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQ 118
I + VG S + + +V+ +V G+
Sbjct: 221 VKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVV---GIHAGAHA 277
Query: 119 IPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
I ++ +W TR + + E+ + R G+L F TL
Sbjct: 278 KVGFFMIPFGASVVTPYWGTRSE------------LMEVVALARAGRLDIHTETF-TLDE 324
Query: 178 FQEAL 182
A
Sbjct: 325 GPAAY 329
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 50.1 bits (120), Expect = 1e-07
Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 29/199 (14%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF-- 64
+ PGD V+ G G + I +H G + + + +++ L K LGAD+V
Sbjct: 211 IRPGDNVVILGG-GPIGLAAVAILKHAGASKVILS----EPSEVRRNLAKELGADHVIDP 265
Query: 65 TEEELRNISRDASIPK-PKLALNCVGGNSATNL-LRTLVSKG----VMVTYGGMSREPVQ 118
T+E D + KL L G + ++ + V + +
Sbjct: 266 TKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIP 325
Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA--HKFVTLK 176
+ F + + G + +M +G +++
Sbjct: 326 LTGEVFQVRRAQIVGSQ----------GHSGHGTFPRVISLMASGMDMTKIISKTV-SME 374
Query: 177 NFQEALMNTMSIQGKSGVK 195
E + KS VK
Sbjct: 375 EIPEYI--KRLQTDKSLVK 391
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 49.5 bits (119), Expect = 1e-07
Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 41/192 (21%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
+ G V G G +Q+AR G T+ + K + +GA
Sbjct: 180 IKAGSTVAILGG-GVIGLLTVQLARLAGATTVILS----TRQATKRRLAEEVGATATVDP 234
Query: 65 TEEELRNISRDASIPKPK---LALNCVGGNSATNL-LRTLVSKGVMVTYGGMSRE-PVQI 119
+ ++ P + + C G R + G +V G + + V+I
Sbjct: 235 SAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEI 294
Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT-----EMMRTGKLAAPAHKFVT 174
+F+++ + G S +N +++ TG + + ++
Sbjct: 295 EPFDILFRELRVLG-----------------SFINPFVHRRAADLVATGAI--EIDRMIS 335
Query: 175 ----LKNFQEAL 182
L + +
Sbjct: 336 RRISLDEAPDVI 347
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 48.8 bits (117), Expect = 3e-07
Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 41/197 (20%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+L+ + P + + + A G Q A+ G K I V K + GA
Sbjct: 131 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA---QKAQ-SALKAGA 186
Query: 61 DYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 114
V E L+ I+ + + + VG ++ L L +G+MV++G S
Sbjct: 187 WQVINYREEDLVERLKEITGGKKVR---VVYDSVGRDTWERSLDCLQRRGLMVSFGNSSG 243
Query: 115 EPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL--- 165
+ K +L+G+ TR E NEL ++ +G +
Sbjct: 244 AVTGVNLGILNQKGSLYVTRPSLQGYITTR--------EELTEASNELFSLIASGVIKVD 295
Query: 166 -----------AAPAHK 171
A AH+
Sbjct: 296 VAEQQKYPLKDAQRAHE 312
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 48.8 bits (117), Expect = 3e-07
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 22/197 (11%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
+ GD V+ + S G IQ+ R G + ++ KL+ + LGA F
Sbjct: 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ---KKLQ-MAEKLGAAAGFNYK 215
Query: 66 EEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 124
+E+ + + L L+C+GG+ + L G V YG M + P +
Sbjct: 216 KEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSK 275
Query: 125 IF-KDITLRGHWMTRWQKENKESAERKSMMNELTE-------MMRTGKLAAPAHKFVTLK 176
+ K +L + R ++++ ++ ++N TE +L + +
Sbjct: 276 LLFKRGSLITSLL-R----SRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVT 330
Query: 177 NFQEA--LMNTMSIQGK 191
QEA M GK
Sbjct: 331 EIQEAHKYMEANKNIGK 347
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 48.0 bits (115), Expect = 5e-07
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 14/169 (8%)
Query: 2 LKDYNSLSPGDVV-IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+ + + G + I NGA G QIA+ +GL+ I + I+ + K +GA
Sbjct: 142 ISRNRNENEGKTLLIINGA-GGVGSIATQIAKAYGLRVITTASRNETIE----WTKKMGA 196
Query: 61 DYV--FTEEELRNISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPV 117
D V E L + I + ++++ + +G + T
Sbjct: 197 DIVLNHKESLLNQF-KTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF---EN 252
Query: 118 QIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKL 165
+A K ++ +M R + + + + ++T +
Sbjct: 253 DQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIY 301
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 47.3 bits (113), Expect = 7e-07
Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 31/146 (21%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L+ V+ GA G + + G + NR+ D YLK LGA
Sbjct: 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD----YLKQLGAS 197
Query: 62 YVFTEEELRNISRDASIPKPKLALN---------CVGGNSATNLLRTLVSKGVMVTYG-- 110
V ISR+ AL+ VGG +LL + G + G
Sbjct: 198 EV--------ISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLT 249
Query: 111 -GMSREPVQIPTSA--FIFKDITLRG 133
G ++P + FI + ++L G
Sbjct: 250 GGG-----EVPATVYPFILRGVSLLG 270
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 47.4 bits (113), Expect = 8e-07
Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 25/188 (13%)
Query: 9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYV--F 64
G V+ GA+ G IQ+ + W + + ++ LGAD V +
Sbjct: 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASE-------LVRKLGADDVIDY 234
Query: 65 TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL--VSKGVMVTYGGMSREPVQIPTS 122
+ + + L+ VGG++ T L S VT + +
Sbjct: 235 KSGSVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF--LLNMDRL 290
Query: 123 AFIFKDITLRGHWMTRWQKENKESAERKSM--------MNELTEMMRTGKLAAPAHKFVT 174
+ ++ K + + ++++ E++ GK+ +
Sbjct: 291 GIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFP 350
Query: 175 LKNFQEAL 182
EA
Sbjct: 351 FSKVPEAF 358
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 46.1 bits (110), Expect = 2e-06
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L+++ V+ GA G + + G + D YL+ LGA
Sbjct: 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD----YLRVLGAK 196
Query: 62 YVFTEEELRNISRDASIPKPKLALN---------CVGGNSATNLLRTLVSKGVMVTYG-- 110
V ++R+ + + L+ VGG + +L + G + G
Sbjct: 197 EV--------LAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLT 248
Query: 111 -GMSREPVQIPTSA--FIFKDITLRG 133
G ++PT+ FI + ++L G
Sbjct: 249 GGA-----EVPTTVHPFILRGVSLLG 269
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 46.0 bits (110), Expect = 2e-06
Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 5 YNSL-----SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
Y L PG V+ +G G +Q AR GL+ + D KL + LG
Sbjct: 156 YKGLKVTDTRPGQWVVISGIGGL-GHVAVQYARAMGLRVAAVDI---DDAKLN-LARRLG 210
Query: 60 ADYV--FTEEELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREP 116
A+ + + + I L A + + + G + G+
Sbjct: 211 AEVAVNARDTDPAAWLQ-KEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIAL-NGLPPGD 268
Query: 117 VQIPTSAFIFKDITLRGH 134
P + K IT+RG
Sbjct: 269 FGTPIFDVVLKGITIRGS 286
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 45.7 bits (109), Expect = 3e-06
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
++ G V+ GA G + +A+ G + + D+ + S K +GAD V
Sbjct: 169 VTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVT----DLSATRLSKAKEIGADLVLQI 223
Query: 65 ---TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIP 120
+ +E+ KP++ + C G ++ + S G +V G+ E +P
Sbjct: 224 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLV-LVGLGSEMTTVP 282
Query: 121 TSAFIFKDITLRG 133
+++ ++G
Sbjct: 283 LLHAAIREVDIKG 295
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 44.5 bits (106), Expect = 7e-06
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 28 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKPKLAL 85
+Q A+ GL + + + KL+ K LGAD V +E+ ++ + A+
Sbjct: 181 VQYAKAMGLNVVAVDIGDE---KLE-LAKELGADLVVNPLKEDAAKFMKEK-VGGVHAAV 235
Query: 86 NCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH 134
A ++ G V G+ E + IP + I + G
Sbjct: 236 VTAVSKPAFQSAYNSIRRGGACVL-VGLPPEEMPIPIFDTVLNGIKIIGS 284
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 43.7 bits (104), Expect = 8e-06
Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 26/177 (14%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
LSPG+ V+ + A G + IA+ G + + K + L LG +YV
Sbjct: 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD---AK-REMLSRLGVEYVGD-- 89
Query: 68 ELRNISRDASIPKPKLA----------LNCVGGNSATNLLRTLVSKGVMVTYGGMS-REP 116
SR L LN + G + ++ L G + G
Sbjct: 90 -----SRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYAD 144
Query: 117 VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA-PAHKF 172
+ +A K + + K + ++ + + + GKL P F
Sbjct: 145 ASLGLAALA-KSASFSVVDLDLNLKLQPARYRQ--LLQHILQHVADGKLEVLPVTAF 198
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 44.1 bits (105), Expect = 1e-05
Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 32/186 (17%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYV-FT 65
G V+ GA G + R G I + D + + ++ + V
Sbjct: 162 GVSGKSVLITGA-GPIGLMAAMVVRASGAGPILVS----DPNPYRLAFARPYADRLVNPL 216
Query: 66 EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP-TSAF 124
EE+L + R + ++ L G +A + + G G+ +P++
Sbjct: 217 EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGEL 276
Query: 125 IFKDITLRGHWMTR----WQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LK 176
+ + IT G R W + T ++ +G++ +T L
Sbjct: 277 VMRGITAFGIAGRRLWQTWMQ--------------GTALVYSGRV--DLSPLLTHRLPLS 320
Query: 177 NFQEAL 182
++EA
Sbjct: 321 RYREAF 326
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 44.5 bits (105), Expect = 1e-05
Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 13/188 (6%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L + PG+ V+ + + GQ I IA G + V + + L++ L
Sbjct: 1659 LVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET 1718
Query: 62 YVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-R 114
E+ + + + L LN + +R L G + G
Sbjct: 1719 CFANSRDTSFEQHVLRHTAGKGV---DLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLS 1775
Query: 115 EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 174
+ + F K++T H + + A + + L ++ G +
Sbjct: 1776 NNHALGMAVF-LKNVTF--HGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFP 1832
Query: 175 LKNFQEAL 182
+ A
Sbjct: 1833 RTKVEAAF 1840
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 43.7 bits (104), Expect = 1e-05
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 38/201 (18%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L + + G+ V+ + A A G V QIA+ G K + + + I YLK +G D
Sbjct: 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA----YLKQIGFD 192
Query: 62 YVF---TEEELRNISRDASIPKPKLALNC----------VGG---NSATNLLRT---LVS 102
F T L L VGG N+ + ++ +
Sbjct: 193 AAFNYKTVNSLEE----------ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAI 242
Query: 103 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 162
G + Y M + P + I+K + + G + RWQ + +E A R +L + +
Sbjct: 243 CGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALR-----DLMKWVLE 297
Query: 163 GKLAAPAHKFVTLKNFQEALM 183
GK+ H +N A +
Sbjct: 298 GKIQYHEHVTKGFENMPAAFI 318
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 42.7 bits (101), Expect = 3e-05
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 29/144 (20%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L+D V+ GA+ G + + G + + YLKSLGA+
Sbjct: 138 LEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHG----YLKSLGAN 193
Query: 62 YVFTEEELRNISRDASIPKPKL-------ALNCVGGNSATNLLRTLVSKGVMVTYG---G 111
+ +SRD L A++ VG +L + G + G G
Sbjct: 194 RI--------LSRDEFAESRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGG 245
Query: 112 MSREPVQIPTSA--FIFKDITLRG 133
+PT+ FI +++ L+G
Sbjct: 246 F-----ALPTTVMPFILRNVRLQG 264
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 42.2 bits (100), Expect = 4e-05
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVFT- 65
+ G V+ GA G + A+ +G + + K+ GAD
Sbjct: 166 VQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVV-CT----ARSPRRLEVAKNCGADVTLVV 219
Query: 66 ------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI 119
E + R A P + ++C G + + G + GM + V +
Sbjct: 220 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTV 279
Query: 120 PTSAFIFKDITLRG 133
P ++I ++
Sbjct: 280 PLVNACAREIDIKS 293
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 41.9 bits (99), Expect = 6e-05
Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 30/202 (14%)
Query: 10 PGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
G + G + + + G + + + RD D ++ L A YV + +
Sbjct: 172 DPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQ 230
Query: 68 ELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPTSAF-- 124
D + G ++ L GV G S ++ AF
Sbjct: 231 TPVEDVPDVY-EQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHR 289
Query: 125 --IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNF 178
+ + L G E+ E+A + K VT L F
Sbjct: 290 EMVLHNKALVGSV--NSHVEHFEAA--------TVTFTKLPKW--FLEDLVTGVHPLSEF 337
Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
+ A + + +K I+F
Sbjct: 338 EAAFDD-----DDTTIKTAIEF 354
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 41.4 bits (98), Expect = 8e-05
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 9/136 (6%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
LK N L G V +GA G +Q A+ G + + I K + +S+G +
Sbjct: 162 LKSAN-LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG---KEE-LFRSIGGE 216
Query: 62 YVF---TEEELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPV 117
E+++ A+ +N +A R + + G V G +
Sbjct: 217 VFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKC 276
Query: 118 QIPTSAFIFKDITLRG 133
+ K I++ G
Sbjct: 277 CSDVFNQVVKSISIVG 292
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 41.2 bits (97), Expect = 1e-04
Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 15/158 (9%)
Query: 13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEEL 69
++I GA G +QIAR L I + + ++KSLGA +V ++
Sbjct: 175 ILIVGGAGGV-GSIAVQIARQRTDLTVIATASRPETQE----WVKSLGAHHVIDHSKPLA 229
Query: 70 RNISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKD 128
++ + P + + A + + +G P F K
Sbjct: 230 AEVAALG-LGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD----PSAFDIMLFKRKA 284
Query: 129 ITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKL 165
+++ M TR + +E+ ++N+++ ++ G+L
Sbjct: 285 VSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRL 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 1e-04
Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 77/202 (38%)
Query: 40 NIVRNRD--DI-DKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNL 96
V N D D+ D KS + ++EE+ +I + L
Sbjct: 28 AFVDNFDCKDVQDMPKS---------ILSKEEIDHI---IMSKDAV--------SGTLRL 67
Query: 97 LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH--W-MTRWQKENKE-SAERKSM 152
TL+SK E VQ F + LR + + M+ + E ++ S +
Sbjct: 68 FWTLLSKQ---------EEMVQK------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 153 MNELTEMMRTGKLAAPAHKFVT----LKNFQEALMNTMSIQ----------GKS------ 192
+ + + ++ A + V+ ++AL+ + GK+
Sbjct: 113 IEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 193 ------------GVKYYIDFRQ 202
+ ++++ +
Sbjct: 171 CLSYKVQCKMDFKI-FWLNLKN 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 4e-04
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 23/50 (46%)
Query: 45 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSAT 94
+ + KL++ LK L AD D++ P LA+ AT
Sbjct: 19 KQALKKLQASLK-LYAD-------------DSA---PALAIK------AT 45
Score = 26.8 bits (58), Expect = 3.2
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 8/26 (30%)
Query: 148 ERKSMMNELTEMMRTGKL----AAPA 169
E++++ +L + KL +APA
Sbjct: 18 EKQAL-KKLQASL---KLYADDSAPA 39
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 39.1 bits (92), Expect = 5e-04
Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 39/201 (19%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
+ S G+ V + A+ A GQ V Q+A+ G + +++ +D LK G D
Sbjct: 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK---TKFGFD 203
Query: 62 YVF---TEEELRNISRDASIPKPKLALNC----------VGG---NSATNLLRT---LVS 102
F E +L L VGG ++ + +
Sbjct: 204 DAFNYKEESDLTA----------ALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAV 253
Query: 103 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 162
G++ Y ++E V ++ I+K ++G ++ + + + + + +R
Sbjct: 254 CGMISQYNLENQEGVHNLSN-IIYKRNRIQGFVVSDFYDKYSK------FLEFVLPHIRE 306
Query: 163 GKLAAPAHKFVTLKNFQEALM 183
GK+ L+ EAL+
Sbjct: 307 GKITYVEDVADGLEKAPEALV 327
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 38.4 bits (90), Expect = 8e-04
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 50/206 (24%)
Query: 10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEE 68
G V+ GA G + IAR G + + ++ + L + +GAD
Sbjct: 195 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVI----AGSPNRLKLAEEIGADLTL---- 245
Query: 69 LRNISRDASIPKPKL------------ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
N + + K L G + A L+ +G + G++
Sbjct: 246 --NRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQ 303
Query: 117 VQIPTSAF---IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFV 173
+P + + K+ T +G W+ + + + K +
Sbjct: 304 DPVPFKVYEWLVLKNATFKGIWV----SDTSH-------FVKTVSITSRNYQ--LLSKLI 350
Query: 174 T----LKNFQEA--LMNTMSIQGKSG 193
T LK +A LM ++
Sbjct: 351 THRLPLKEANKALELME----SREAL 372
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 37.6 bits (88), Expect = 0.001
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 28 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK----- 82
++ A+ +G K I + K + LK+ GAD +SRD +
Sbjct: 204 VKFAKAFGSKVTVISTSPS---KKEEALKNFGADSFL-------VSRDQEQMQAAAGTLD 253
Query: 83 LALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 133
++ V L L S G ++ G +P+++P + I + G
Sbjct: 254 GIIDTVSAVHPLLPLFGLLKSHGKLILVG-APEKPLELPAFSLIAGRKIVAG 304
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 34.3 bits (79), Expect = 0.025
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 36/196 (18%)
Query: 8 LSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE 66
L PG+ +++ + A G IQ+ARH G + DK ++ L +++ +
Sbjct: 343 LRPGESLLVHSAA-GGVGMAAIQLARHLGAEVYATASE----DKWQAV--ELSREHLAS- 394
Query: 67 EELRNISRDASIPKPKLA----------LNCVGGNSATNLLRTLVSKGVMVTYGGM-SRE 115
SR + L LN + G A LR L G + G R+
Sbjct: 395 ------SRTCDFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRD 448
Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
PV++ A ++ + + M++EL E+ L +
Sbjct: 449 PVEV---ADAHPGVSYQAFDTVEAGPQ-----RIGEMLHELVELFEGRVLEPLPVTAWDV 500
Query: 176 KNFQEALMNTMSIQGK 191
+ EA + +S Q +
Sbjct: 501 RQAPEA-LRHLS-QAR 514
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 33.8 bits (78), Expect = 0.028
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 41/164 (25%)
Query: 29 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE---EELRNISRDASIPKPKLAL 85
++ G +TI++ + D++ L D + E + +A+ P AL
Sbjct: 224 KLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGV-DAVGFEAHGLGDEANTETPNGAL 282
Query: 86 NCVGGNSATNLLR---TLVSKGVMVTYGGMSREP---------VQIPTSAFIFKDITLRG 133
NS +++R + G+ Y G +P + + K I +
Sbjct: 283 -----NSLFDVVRAGGAIGIPGI---YVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMT 334
Query: 134 ---HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 174
+T + LTE + ++ +
Sbjct: 335 GMAP-VTNY-------------NRHLTEAILWDQMPYLSKVMNI 364
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold,
reduction of to arsenite, oxidoreductase; 2.20A
{Corynebacterium glutamicum}
Length = 213
Score = 32.4 bits (74), Expect = 0.053
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
Query: 12 DVVIQNGANSAC----GQNVIQIARHWGL-----KTINIVRN-RDDID-KLKSYLKSL 58
D VI G C G++ + W L + + ++ ++ID +++ KS+
Sbjct: 155 DYVITMGCGDVCPMYPGKHYL----DWELADPSDEGEDKIQEIIEEIDGRIRELWKSI 208
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 32.7 bits (75), Expect = 0.056
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 40/141 (28%)
Query: 48 IDKLKSYLKSLGADYVF-----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 102
I++ ++Y++ GA+ +F R + ++ P LA G + L S
Sbjct: 170 IERAQAYVE-AGAEMLFPEAITELAMYRQFAD--AVQVPILANITEFGATPLFTTDELRS 226
Query: 103 KGV-MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR 161
V M Y P SAF A ++ + + +
Sbjct: 227 AHVAMALY----------PLSAF---------------------RAMNRAAEHVYNVLRQ 255
Query: 162 TGKLAAPAHKFVTLKNFQEAL 182
G + T E++
Sbjct: 256 EGTQKSVIDTMQTRNELYESI 276
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 32.4 bits (74), Expect = 0.094
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 29 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASI 78
+ +G+ ++ K+ + L+ LG + + T + D +I
Sbjct: 113 ALGDAFGMPVGSVT-----TGKMLAALQKLGFAHCWDT-----EFTADVTI 153
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 31.4 bits (72), Expect = 0.16
Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 41/209 (19%)
Query: 2 LKDYNSLSPGD---VVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS 57
+++ ++ G +V+ +GA ACG QI G + + I + L
Sbjct: 150 IQEKGHITAGSNKTMVV-SGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLT---SE 205
Query: 58 LGADYVFTEEELRNISRDASIPKPKLALNC----------VGGNSATNLLRTLVSKGVMV 107
LG D N + ++ + +L +C VGGN + ++ + ++
Sbjct: 206 LGFDAAI------NY-KKDNVAE-QLRESCPAGVDVYFDNVGGNISDTVISQMNENSHII 257
Query: 108 TYGGMSR----EPVQIPT-----SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE 158
G +S+ P P + ++IT + ++ + + +L++
Sbjct: 258 LCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGIL------QLSQ 311
Query: 159 MMRTGKLAAPAHKFVTLKNFQEALMNTMS 187
+ GKL L+N A + M+
Sbjct: 312 WFKEGKLKIKETVINGLENMGAAFQSMMT 340
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 31.5 bits (71), Expect = 0.17
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 25 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASI 78
+ IA GL +L L+ LG D VF T D +I
Sbjct: 54 AVRVAIAETLGLAPGATT-----PKQLAEGLRRLGFDEVFDT-----LFGADLTI 98
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.7 bits (67), Expect = 0.41
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 27 VIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 68
++ + + I D ++ L G D F
Sbjct: 122 ALEQLQRRNYKGQIAAIAEYPDQLEGLLE----SGVDAAFNIYS 161
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 29.5 bits (67), Expect = 0.76
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 23/115 (20%)
Query: 28 IQIARHWGLKTINIVRN---RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK-- 82
I++A G + + R+ K+LGAD V SR+A
Sbjct: 211 IKLAHAMGAHVVAFTTSEAKREAA-------KALGADEVV-------NSRNADEMAAHLK 256
Query: 83 ---LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 133
LN V + + L G M G + I K + G
Sbjct: 257 SFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG 311
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 28.4 bits (64), Expect = 1.6
Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 17/117 (14%)
Query: 29 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLAL 85
A+ G + ++ + +++ + L D E + A P L
Sbjct: 224 AHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVL 283
Query: 86 NCVGGNSATNLLR---TLVSKGVMVTYGG------MSREPVQIPTSAFIFKDITLRG 133
NS + R + G+ VT + I K +
Sbjct: 284 -----NSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHT 335
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 28.1 bits (63), Expect = 1.9
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 25 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF 64
I + + V K+ + L+ LG D +F
Sbjct: 232 SVRASIGELFNMGFGVDV-----TGKIYTALRQLGFDKIF 266
>2bsq_E FITA, trafficking protein A; transcription, transcription
regulation complex, PIN domain, ribbon-helix-helix, DNA
binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP:
a.43.1.8 PDB: 2h1o_E*
Length = 77
Score = 26.4 bits (58), Expect = 2.0
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 41 IVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLAL 85
++RN + + +K TE E+R I + + + + L
Sbjct: 4 VIRNLSE--ATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRL 47
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 27 VIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
++ AR ++ I R D + + GA+ V E
Sbjct: 88 IVASARAKNPDIEII--ARAHYDDEVAY--ITERGANQVVMGE 126
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.6 bits (59), Expect = 4.1
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 27 VIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL 69
V+ A+ +KT+ V + +++K+K + D + + +
Sbjct: 88 VVLSAKDMSSDVKTVLAVSDSKNLNKIKM----VHPDIILSPQLF 128
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 27.4 bits (61), Expect = 4.1
Identities = 6/76 (7%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 105 VMVTYGGMSREPVQIPTS--AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 162
+ +GG + + ++ + A+ +D + R+ ++ +
Sbjct: 356 QLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTK 415
Query: 163 GKLAAPAHKFVTLKNF 178
+ ++ N+
Sbjct: 416 ALPKSDWGMYI---NY 428
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 27.3 bits (61), Expect = 4.1
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 18/70 (25%)
Query: 6 NSLSPGD--VVIQNGA--------NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL 55
+ + P D ++ G G NV + WG D + + +
Sbjct: 81 SVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG--------TVFDPEDIIREI 132
Query: 56 KSLGADYVFT 65
K + V
Sbjct: 133 KKVKPKIVAM 142
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 26.5 bits (59), Expect = 4.4
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--- 68
V+ G++ +++ R IVR K + + GA+ V +
Sbjct: 72 SAVLITGSDDEFNLKILKALRSVSDVYA-IVRVSSPKKKEE--FEEAGANLVVLVADAVK 128
Query: 69 ---LRNISRDASI 78
+ I + ++
Sbjct: 129 QAFMDKIKKMETL 141
>2bbh_A Divalent cation transport-related protein; transporter, Mg,
membrane, structural genomics, structural G consortium,
SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP:
d.328.1.1
Length = 269
Score = 26.9 bits (60), Expect = 4.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 32 RHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF 64
+ + VR R I + ++ ADY+
Sbjct: 143 QEKIGDVFDPVRER--IRYNRGIIRKKRADYLL 173
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 26.8 bits (60), Expect = 5.8
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 28 IQIARH-WGLKTINIVRNRDDIDKLKSYLKSLG-----ADYVFTEEELRNISRDA 76
+ A+ +G + I+ K++LK +G D EE++ I +
Sbjct: 318 ERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNV 372
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 26.4 bits (58), Expect = 6.2
Identities = 5/35 (14%), Positives = 18/35 (51%)
Query: 29 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 63
++ + LK I ++ + ++ + + +L + Y+
Sbjct: 15 KLVEKFNLKRALISLDQPNTNEQRKQVAALVSSYL 49
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 26.5 bits (59), Expect = 6.3
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 6 NSLSPGD--VVIQNGANSACGQNVIQIARHWGLKTINI---VRNRDDIDKLKSYLKSLGA 60
N L GD ++ NG + ++++ +G I ++ L ++
Sbjct: 88 NLLEEGDRVLIAVNG---IWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQP 144
Query: 61 DYVFT 65
+F
Sbjct: 145 KCLFL 149
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE;
1.91A {Novosphingobium aromaticivorans dsm
12ORGANISM_TAXID}
Length = 172
Score = 26.2 bits (57), Expect = 6.5
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 8 LSPGDVVIQNGAN 20
+ G +++Q G N
Sbjct: 122 VRQGGIIVQRGTN 134
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport
complex; HET: HEM; 3.15A {Riftia pachyptila}
Length = 148
Score = 26.2 bits (57), Expect = 6.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 40 NIVRNRDDIDKLKSYLKSLGAD 61
++ DDI L+S L L
Sbjct: 77 ILINALDDIPTLESMLDHLAGQ 98
>4edh_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas
aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A*
3uxm_A*
Length = 213
Score = 26.0 bits (58), Expect = 7.4
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 8/33 (24%)
Query: 48 IDKLKSYLKSLGADYVFTEE--------ELRNI 72
D L L+ G + T E +R +
Sbjct: 23 RDYLAERLRERGIEVQLTREPGGTPLAERIREL 55
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 26.1 bits (58), Expect = 8.5
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 6 NSLSPGD--VVIQNGANSACGQNVIQIARHWGLKTINI---VRNRDDIDKLKSYLKSLGA 60
N L PGD + NG G +IA G + + + +++ L
Sbjct: 93 NLLEPGDSFLTGTNG---IWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKP 149
Query: 61 DYVFT 65
+F
Sbjct: 150 VLLFL 154
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 26.0 bits (58), Expect = 8.5
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 10/40 (25%)
Query: 6 NSLSPGD--VVIQNGA--------NSACGQNVIQIARHWG 35
+ L P D +V+ NG NV + G
Sbjct: 72 SLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG 111
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 26.0 bits (58), Expect = 9.0
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 6 NSLSPGD--VVIQNGA--------NSACGQNVIQIARHWG 35
N +S G +V GA + G+ + + G
Sbjct: 90 NGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG 129
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 26.1 bits (58), Expect = 9.2
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 6 NSLSPGD--VVIQNGA--------NSACGQNVIQIARHWG 35
N++ PGD ++ G G +V I++ WG
Sbjct: 104 NAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG 143
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 26.2 bits (57), Expect = 9.8
Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 6/29 (20%)
Query: 87 CVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
V G N S G +V G E
Sbjct: 150 SVIGGICNN------SGGSLVQRGPAYTE 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,026,290
Number of extensions: 172685
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 100
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)