RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2961
(202 letters)
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast
(Candida tropicalis) [TaxId: 5482]}
Length = 189
Score = 93.5 bits (231), Expect = 1e-24
Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 11/173 (6%)
Query: 1 MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
ML Y L+PG D IQNG SA G+ QI + +I+++R+R ++D++ + LK LG
Sbjct: 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 78
Query: 60 ADYVFTEEELRNISRD--------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
A V TE++ + S + KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 79 ATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 138
Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 164
MS +PV IPTS +IFK+ T G W+T K NKE + S +N++ GK
Sbjct: 139 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE--LKTSTLNQIIAWYEEGK 189
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 54.7 bits (130), Expect = 4e-10
Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
L + + G+ V+ + A A G V QIA+ G K + + + I LK
Sbjct: 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAF 79
Query: 61 DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE----- 115
+Y + + S + VGG +L + G + G +S
Sbjct: 80 NYKTVNSLEEALKKA-SPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQ 138
Query: 116 -PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 163
P + I+K + + G + RWQ + R+ + +L + + G
Sbjct: 139 LPPGPSPESIIYKQLRIEGFIVYRWQGD-----VREKALRDLMKWVLEG 182
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol
dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 187
Score = 49.6 bits (117), Expect = 2e-08
Identities = 24/175 (13%), Positives = 63/175 (36%), Gaps = 17/175 (9%)
Query: 1 MLKDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
+++ +S G ++ +GA ACG QI G + + + +
Sbjct: 19 GVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF 78
Query: 59 GADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
A + + R+A + + VGG+ + ++ + ++ G +S+
Sbjct: 79 DAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKD 138
Query: 119 IPT---------SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 164
+P + ++IT + ++ + + + +L++ + GK
Sbjct: 139 VPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEP------GILQLSQWFKEGK 187
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus
subtilis [TaxId: 1423]}
Length = 167
Score = 48.8 bits (115), Expect = 4e-08
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 5/147 (3%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L+ V+ GA G + + G + NR+ D YLK LGA
Sbjct: 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD----YLKQLGAS 70
Query: 62 YVFTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
V + E++ + + A + + A++ VGG +LL + G + G V
Sbjct: 71 EVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPAT 130
Query: 121 TSAFIFKDITLRGHWMTRWQKENKESA 147
FI + ++L G + + +
Sbjct: 131 VYPFILRGVSLLGIDSVYCPMDVRAAV 157
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 174
Score = 46.9 bits (110), Expect = 2e-07
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 8/163 (4%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
L + G+ V+ +GA+ G QIAR +GLK + + +
Sbjct: 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF 78
Query: 61 DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
++ + I + + + + + + L L G ++ G ++I
Sbjct: 79 NH-REVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEIN 135
Query: 121 TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 163
+ K+ ++ G + KE E + L M G
Sbjct: 136 PRDTMAKESSIIGVTLFSSTKE-----EFQQYAAALQAGMEIG 173
>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia
coli [TaxId: 562]}
Length = 177
Score = 43.3 bits (101), Expect = 4e-06
Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 6/149 (4%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
L+D ++ GA+ G + + G + + + + YLKSLGA
Sbjct: 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE----YLKSLGAS 78
Query: 62 YVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
V +E SR A++ VG +L + G + G +
Sbjct: 79 RVLPRDEF-AESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTV 137
Query: 122 SAFIFKDITLRG-HWMTRWQKENKESAER 149
FI +++ L+G + + ++ +R
Sbjct: 138 MPFILRNVRLQGVDSVMTPPERRAQAWQR 166
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga
maritima [TaxId: 2336]}
Length = 182
Score = 36.8 bits (84), Expect = 6e-04
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 7/142 (4%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
+Y G V+ GA G + IAR G + + ++ + KL + +
Sbjct: 19 AFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT 77
Query: 61 DYVFTEEELRNISRDASIPKPKLA---LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
I + A L G + A L+ +G + G++
Sbjct: 78 LNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQD 137
Query: 118 QIPTSAF---IFKDITLRGHWM 136
+P + + K+ T +G W+
Sbjct: 138 PVPFKVYEWLVLKNATFKGIWV 159
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
{Yeast (Candida tropicalis) [TaxId: 5482]}
Length = 175
Score = 32.4 bits (72), Expect = 0.019
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1 MLKDYNSLSPGDVVIQNG-ANSACGQNVIQ 29
+ Y+ P + Q+G ANS G+ +I
Sbjct: 145 IETLYDGTKPLHELYQDGVANSKDGKQLIT 174
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
{Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 32.4 bits (74), Expect = 0.021
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 39/144 (27%)
Query: 25 QNVIQIARHWGLKTINIVRNRDDIDKLK------SYLKSLGA-----DYVFTEEELRNIS 73
+ +I A+ ++ I V D+L S+ LGA D F ++
Sbjct: 53 KEIINHAKDNNMEVILDV-APAVFDQLGISYSDLSFFAELGADGIRLDVGFDGLTEAKMT 111
Query: 74 RDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT------------YGGMSREPVQ--- 118
+ K+ LN ++ L ++S + + G+ +
Sbjct: 112 NNP--YGLKIELN---VSNDIAYLENILSHQANKSALIGCHNFYPQKFTGLPYDYFIRCS 166
Query: 119 -------IPTSAFIFKDITLRGHW 135
I ++AFI + G W
Sbjct: 167 ERFKKHGIRSAAFITSHVANIGPW 190
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 32.3 bits (72), Expect = 0.022
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 15/156 (9%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
PG V +G G +Q AR GL I + ++ + S +E
Sbjct: 25 ARPGQWVAISGIGG-LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS--LTVNARQE 81
Query: 68 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFK 127
+ + + + V ++ + G + G P + K
Sbjct: 82 DPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPP-GDFPTPIFDVVLK 140
Query: 128 DITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 163
+ + G + + E + G
Sbjct: 141 GLHIAGSIVGTRA-----------DLQEALDFAGEG 165
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 29.6 bits (66), Expect = 0.20
Identities = 6/45 (13%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 29 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNIS 73
+ +G+ ++ K+ + L+ LG + + E +++
Sbjct: 27 ALGDAFGMPVGSVT-----TGKMLAALQKLGFAHCWDTEFTADVT 66
>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia
coli, gene ddlB [TaxId: 562]}
Length = 96
Score = 28.5 bits (63), Expect = 0.21
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 102 SKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 160
+ + V GG S E V + + A + + G + + + KSM + +
Sbjct: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61
Query: 161 RTG 163
G
Sbjct: 62 LHG 64
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 28.3 bits (62), Expect = 0.40
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL 69
++ N A V+ A+ ++ D K + +K + D + + +
Sbjct: 73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS--KNLNKIKMVHPDIILSPQLF 128
>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 222
Score = 28.3 bits (61), Expect = 0.55
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 28 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRNI 72
I AR G++ I L GA+ V + ++L +
Sbjct: 171 IHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAV 216
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 26.5 bits (58), Expect = 0.66
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 19 ANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
A+ G + + G + + + + YLKSLGA
Sbjct: 40 ASGGVGSTAVALLHKLGYQVVAVSGRESTHE----YLKSLGA 77
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic
domain {Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 28.0 bits (62), Expect = 0.75
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 25 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF 64
I + + D K+ + L+ LG D +F
Sbjct: 23 SVRASIGELFNMGF-----GVDVTGKIYTALRQLGFDKIF 57
>d2bsqe1 a.43.1.8 (E:2-70) Trafficking protein A {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 69
Score = 25.9 bits (57), Expect = 0.96
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 41 IVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLAL 85
++RN + + +K TE E+R I + + + + L
Sbjct: 4 VIRNLSE--ATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRL 47
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 27.5 bits (60), Expect = 1.2
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 37 KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA 76
+ N +D + + + +L++ G +++EEE N+ A
Sbjct: 282 ELENEWAKKDPLVRFRKFLEAKG---LWSEEEENNVIEQA 318
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 62
Score = 25.0 bits (55), Expect = 1.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 59 GADYVFTEEELRNISRDAS 77
G Y+F ++ I +AS
Sbjct: 44 GNHYLFNAMDIAEIRNNAS 62
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 26.4 bits (57), Expect = 1.8
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL 69
VI N + + + I R I + + L+ GAD V + +
Sbjct: 64 RAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQ--LRMAGADQVISPFVI 119
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 26.1 bits (57), Expect = 3.4
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV---RNRDDIDKLKSYLKSL 58
S + ++ GA+ G+++ + K + +R ++ L++ L+
Sbjct: 204 RSGLLRFSDSEKMVDCGAS--IGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 261
Query: 59 GADYVFTEEELRNIS 73
+ +
Sbjct: 262 TDTNFASRITVHGCG 276
>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol
dehydrogenase, ADH6 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 192
Score = 25.2 bits (54), Expect = 4.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 8 LSPGDVVIQNGANSACGQNVIQIARHWG 35
D+ I+ A CG ++ A HWG
Sbjct: 31 FYDHDIDIKIEACGVCGSDIHCAAGHWG 58
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 25.5 bits (55), Expect = 5.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 87 CVGGNSATNLLRTLVSKGVMVTY 109
V G N +LV +G T
Sbjct: 142 SVIGGICNNSGGSLVQRGPAYTE 164
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 138
Score = 24.8 bits (53), Expect = 6.2
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
+L + ++ P V+ + I I + I+ + +YL +L
Sbjct: 79 ILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTL 136
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 25.3 bits (54), Expect = 6.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 45 RDDIDKLKSYLKSLGADYV 63
R+ D+L Y K +G ++
Sbjct: 40 RELADQLVPYAKWMGFTHL 58
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Campylobacter jejuni [TaxId: 197]}
Length = 229
Score = 25.1 bits (54), Expect = 7.0
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 134 HWMTRWQKENKESAERKSMMNELTEMMRT 162
+W + KE K + R+ + E E++ +
Sbjct: 25 NWENGYTKEGKLISWRRCIYMECAELIDS 53
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 23.2 bits (50), Expect = 7.3
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 24 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 68
G++ I+ G K++ V+N +Y + D V E E
Sbjct: 24 GRDFQAISDVIGNKSVVQVKNF-----FVNYRRRFNIDEVLQEWE 63
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.7 bits (54), Expect = 7.6
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 37 KTINIVR--NRDDIDKLKSYLKSLGADYVFTEEELRNI 72
++I + R D +SY+K G + + +
Sbjct: 9 RSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGM 46
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 24.4 bits (52), Expect = 7.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 36 LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISR 74
L + R+ +D+D + + LK + A F LR I
Sbjct: 7 LDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL 45
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 216
Score = 24.6 bits (53), Expect = 7.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 138 RWQKENKESAERKSMMNELTEMMRTGKLAA 167
W ++ K A R +T ++ TG L +
Sbjct: 186 LWYQQTKGRASR------VTMIILTGNLES 209
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 24.7 bits (52), Expect = 9.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 39 INIVRNRDDIDKLKSYLKSLGADYVFTEE 67
IN + + +L S++KS +E
Sbjct: 13 INGLNSAIKRHRLASWIKSQDPSVCCIQE 41
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 24.8 bits (52), Expect = 9.9
Identities = 13/62 (20%), Positives = 22/62 (35%)
Query: 4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 63
D L G +V+ GAN +V++ G K R+ + L+ +
Sbjct: 4 DNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRF 63
Query: 64 FT 65
T
Sbjct: 64 ET 65
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 24.1 bits (51), Expect = 9.9
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 18 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL 69
GAN + + + I + K+ L+ +GAD + E+
Sbjct: 73 GANIQASTLTTLLLKELDIPNIWVKAQNYYHHKV---LEKIGADRIIHPEKD 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,702
Number of extensions: 31927
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 38
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)