Query psy2962
Match_columns 690
No_of_seqs 599 out of 4403
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 22:02:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-39 4.6E-44 361.4 31.2 383 185-624 54-473 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.4E-30 5E-35 285.1 29.4 357 185-615 61-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 8E-29 2.8E-33 270.2 32.9 322 133-535 43-403 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 2.4E-26 8.3E-31 254.7 26.1 351 185-535 53-444 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.5E-27 5.2E-32 254.8 13.8 304 185-535 34-348 (375)
6 2cfq_A Lactose permease; trans 99.9 4.2E-24 1.4E-28 231.8 16.9 350 185-622 42-408 (417)
7 2xut_A Proton/peptide symporte 99.9 5.6E-23 1.9E-27 229.6 18.6 137 185-321 53-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.1 1.9E-09 6.4E-14 117.0 17.5 111 423-535 63-177 (451)
9 3o7q_A L-fucose-proton symport 99.0 1.9E-08 6.5E-13 108.6 19.8 119 415-535 51-175 (438)
10 2gfp_A EMRD, multidrug resista 98.9 8.2E-09 2.8E-13 109.2 15.2 121 413-535 23-146 (375)
11 4aps_A DI-OR tripeptide H+ sym 98.9 2.1E-08 7.2E-13 110.2 17.3 110 424-535 56-168 (491)
12 2cfq_A Lactose permease; trans 98.9 3.7E-09 1.3E-13 113.9 10.2 140 186-325 259-403 (417)
13 2xut_A Proton/peptide symporte 98.8 1.5E-07 5.2E-12 104.3 18.6 112 423-535 55-170 (524)
14 4gc0_A D-xylose-proton symport 98.6 6E-07 2.1E-11 98.4 18.6 107 429-535 62-184 (491)
15 3b9w_A Ammonium transporter fa 56.8 1.8E+02 0.0062 29.9 14.8 15 391-405 176-190 (407)
16 2g9p_A Antimicrobial peptide l 29.0 16 0.00056 20.3 0.6 14 205-218 2-15 (26)
17 3hd6_A Ammonium transporter RH 26.2 5.9E+02 0.02 26.8 13.8 13 392-404 223-235 (490)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-39 Score=361.43 Aligned_cols=383 Identities=19% Similarity=0.297 Sum_probs=285.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh------------------ccccHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA------------------FAPDFWTFTACR 246 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~------------------~s~s~~~l~~~R 246 (690)
+.+.|++.+++++|.++|++++|+++||+|||++++++.+++.+++++++ +++|+++++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999988 478999999999
Q ss_pred HHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh-----------hchHHHHHHHHHHHHH
Q psy2962 247 LIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH-----------DWRHLDILVTLPGLIY 315 (690)
Q Consensus 247 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~-----------~Wr~~~~i~~i~~ll~ 315 (690)
+++|++.|+..+...+++.|+.|+++|++..++.+.++.+|.++++.+++... .||+.+.+..++.++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999887762 4888999999999998
Q ss_pred HHHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHH
Q psy2962 316 LAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKK 395 (690)
Q Consensus 316 ~~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (690)
++..+++||||||+..|++.+++++.+++....+....+..... ......++.......++.+.....
T Consensus 214 ~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4gc0_A 214 LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIK------------HSLDHGRKTGGRLLMFGVGVIVIG 281 (491)
T ss_dssp HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTTHHHHSCCTHHHHH
T ss_pred hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHH------------HHHHhhhhhhhHHHHhcccHHHHH
Confidence 88899999999999999999999999988765433221111100 000001111122333444444433
Q ss_pred HHHHHHHHH--HHHHHHHHHhhccCCC--CchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy2962 396 SVIIFFLWF--VCSLTYYGLSWNTANL--GGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL 471 (690)
Q Consensus 396 ~l~~~~~~~--~~~~~~~~~~~~~~~l--~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~ 471 (690)
.....+.++ .+...+|...+..... ..+......+.++..+++.++++++.||+|||+.++.+...++++++.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 333333333 2334444443322211 133445566778889999999999999999999999888888777766544
Q ss_pred c--CCChhHHHHHHHHHHHHHHHH-HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCcccc
Q psy2962 472 L--PLDLNTVSIVLAMMGKFFITG-AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFE 548 (690)
Q Consensus 472 ~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~ 548 (690)
. .....+..++..++...+.+. ..++.+.+.+|++|++.|++++|+++.+++++++++|.+.+... .
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~------~---- 431 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD------K---- 431 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC------H----
T ss_pred HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----
Confidence 3 223333333333333333333 34578899999999999999999999999999999988876511 0
Q ss_pred ccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCCCC
Q psy2962 549 YYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKLPE 624 (690)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l~~ 624 (690)
... .....+...+|++++++++++.++++ ++||||+|+++|
T Consensus 432 ----------------------------------~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 432 ----------------------------------NSW-LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp ----------------------------------HHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred ----------------------------------HHH-HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 000 00023445678899999999888775 899999998755
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=1.4e-30 Score=285.07 Aligned_cols=357 Identities=12% Similarity=0.062 Sum_probs=269.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc----cccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF----APDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~----s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|++.|++.+...+..
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH
Confidence 578999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hh-chHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HD-WRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~-Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~ 335 (690)
.+++.|++|+++|++++++...+..+|.++++.++..+ .+ ||+.|++.+++.++.. +.++++||+|++...+.+.
T Consensus 141 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (451)
T 1pw4_A 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 220 (451)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh
Confidence 99999999999999999999999999999999999775 36 9999999998877654 4556789887642111100
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLS 414 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 414 (690)
++ ++... .+.+.+.+.+........++++|++.++...+..++..+..... .+...
T Consensus 221 ~~---------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (451)
T 1pw4_A 221 EY---------------------KNDYP--DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT 277 (451)
T ss_dssp TT---------------------CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh---------------------ccccc--ccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00000000000111111467788888887777666665544333 34444
Q ss_pred hccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHH-HHHHHHHhcCCChhHHHHHHHHHHH
Q psy2962 415 WNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRY--GRKNFLCPCLILSG-LCLIVSALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 415 ~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~--grr~~l~~~~~~~~-i~~l~~~~~~~~~~~~~~~~~~l~~ 488 (690)
+..+.++.+ ......+.+++.+++.++.+++.||+ |||+.+..+..+.. ++++++.+.+....+...+..++.+
T Consensus 278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357 (451)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 544445644 34556667788899999999999999 99998887776666 5555554444334555555666666
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccccccCccccccccccccchhhccccCCC
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARV-GGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMP 567 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (690)
++.+...+....+..|.+|++.|+++.|+.+.+..+ |++++|.+.+... +
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~------~----------------------- 408 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV------D----------------------- 408 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------
Confidence 777777888889999999999999999999999999 9999999988621 1
Q ss_pred cchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q psy2962 568 KEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP 615 (690)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 615 (690)
..++...|++.+++.+++.++.++++
T Consensus 409 ----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 409 ----------------------FFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ----------------------SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887776554
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=8e-29 Score=270.23 Aligned_cols=322 Identities=11% Similarity=0.074 Sum_probs=252.9
Q ss_pred ceeehhhhhhhhccCCCCCcchhccchhhcccccCCCccccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccc
Q psy2962 133 TTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDR 212 (690)
Q Consensus 133 tiv~e~~p~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr 212 (690)
.+..-.+|.+.+++|.+ ..+.|++.+++.++.+++++++|+++||
T Consensus 43 ~~~~~~~~~~~~~~g~s-----------------------------------~~~~g~~~~~~~~~~~i~~~~~G~l~dr 87 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLT-----------------------------------NFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHSCCC-----------------------------------SHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555678888888866 5789999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHH
Q psy2962 213 FGRKPTFMISILIMDVFGTLA---AFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFL 289 (690)
Q Consensus 213 ~Grr~~ll~~~~l~~i~~~~~---~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~ 289 (690)
+|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----h-------------------------chHHHHHHHHHHHHHHHHHHHh--cCchhHHHhcCCHHHH
Q psy2962 290 LIAGLAYFVH----D-------------------------WRHLDILVTLPGLIYLAYWWFI--PESARWLISKGRNEEA 338 (690)
Q Consensus 290 l~~~l~~~l~----~-------------------------Wr~~~~i~~i~~ll~~~~~~~l--pesp~~l~~~~~~~ea 338 (690)
+++.++..+. + ||+.|++.+++.++..+..++. ||+++..
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------- 238 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--------- 238 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---------
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---------
Confidence 9999987764 2 9999988887766665544443 5443200
Q ss_pred HHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhh-c
Q psy2962 339 KLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSW-N 416 (690)
Q Consensus 339 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~ 416 (690)
+++++++....++++++|+|.++...+..++........ .+...+ .
T Consensus 239 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 239 --------------------------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp --------------------------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------cccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000001112235677889998888777666555543333 344444 3
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+ ......+..++.+++.++.+++.||+|||+.+..+.++.+++++++.+.+. .+ ..+..++.+++.+.
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--HV-GLIALTLCSAFMSI 363 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHHHHTT
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC--cH-HHHHHHHHHHHHHH
Confidence 3444533 445556667888899999999999999999999998888888777666542 22 23344556677888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++..+.+..|.+|++ ++.+.++.. .+.+|++++|.+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 8899999999999977 888888877 778999999999987
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=2.4e-26 Score=254.74 Aligned_cols=351 Identities=10% Similarity=-0.022 Sum_probs=224.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.++++++++++.++++|++.|++.+...+...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 132 (491)
T 4aps_A 53 RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 6789999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCc--chhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHh-cCch----hHHHhcC
Q psy2962 264 ALEMVGPSK--RIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFI-PESA----RWLISKG 333 (690)
Q Consensus 264 i~e~~~~~~--R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~l-pesp----~~l~~~~ 333 (690)
+.|++|+++ |+.+.++++.+.++|.+++|.+++.+ .+||+.|++.++..++.++..++. |+.. +....+.
T Consensus 133 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4aps_A 133 VGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL 212 (491)
T ss_dssp HHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC
T ss_pred HHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc
Confidence 999999988 77788889999999999999999887 379999999877766655444432 2110 0000111
Q ss_pred CHHHHHHHHHH--------------HHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHH
Q psy2962 334 RNEEAKLIIQA--------------VAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVII 399 (690)
Q Consensus 334 ~~~ea~~~l~~--------------~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 399 (690)
+.++.++..+. ....++.+.++.....................+.......+..+....+...+..
T Consensus 213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4aps_A 213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAA 292 (491)
T ss_dssp SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 33333333222 1111111111100000000000000000000000000001111111222222222
Q ss_pred HHHHHHHHHHH-HHHhhccCCCC---chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----HHHHHHHHHHHHHH
Q psy2962 400 FFLWFVCSLTY-YGLSWNTANLG---GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLC-----PCLILSGLCLIVSA 470 (690)
Q Consensus 400 ~~~~~~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~-----~~~~~~~i~~l~~~ 470 (690)
.+.+....... +...+..+..+ ..........++..+++..+.+++.||+|||+... .+.++.+++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 22222221111 11111111111 22334455666777788889999999999986544 56666666655544
Q ss_pred hcC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 471 LLP-------LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 471 ~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
... ....+...+..++.+++.+...+..+.++.|.+|++.|+++.|+.+....+|++++|.+.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 373 IPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 12344455556666777777788889999999999999999999999999999999999876
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=1.5e-27 Score=254.80 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=227.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+....++
T Consensus 34 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 113 (375)
T 2gfp_A 34 EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLP 113 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|++++++.+.+..+|.++++.++..+. +||+.+++.++..++..+ ..+++||++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 182 (375)
T 2gfp_A 114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD----------- 182 (375)
T ss_dssp HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT-----------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC-----------
Confidence 99999999999999999999999999999999873 799999998888776654 455678775410
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTAN- 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 419 (690)
+++++...++++++|+|.++...+..++.++.........+.+...
T Consensus 183 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
T 2gfp_A 183 ---------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV 229 (375)
T ss_dssp ---------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH
T ss_pred ---------------------------------cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001223456778888887776666655554443333333322222
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHH--HHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLIL-SGLCLI--VSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~-~~i~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.+ ........++..+++.++.+++.||++++ +..+..+ ...+.. ........+.+...+..++.+++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 3333 23344445566677777777777777662 2222222 111111 11111112334444555666788888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+....+..|.+| +.|+++.|+.+....+|.+++|.+.+.
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999 789999999999999999999988765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=4.2e-24 Score=231.78 Aligned_cols=350 Identities=16% Similarity=0.115 Sum_probs=220.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHh---hhhccccHH-HHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGT---LAAFAPDFW-TFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~---~~~~s~s~~-~l~~~R~l~G~~~g~~~~~~ 260 (690)
+.+.|++.+++.++..++++++|+++||+|||++++++.++.+++.. ..++++... .+...+++.|++.+..++..
T Consensus 42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 121 (417)
T 2cfq_A 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121 (417)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999988877655321 112222211 23455666666555544444
Q ss_pred HHHHhhhcCC--CcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHH
Q psy2962 261 YVLALEMVGP--SKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNE 336 (690)
Q Consensus 261 ~~~i~e~~~~--~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ 336 (690)
...+.++.++ ++|+...+....+..+|..++|.++.++. +||+.|++.+++.++..+..++.+|+++. +.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 198 (417)
T 2cfq_A 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS
T ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc
Confidence 4444444432 45677777777778888888888887763 69999988877765555544444433210 00000
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhh
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSW 415 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ 415 (690)
+ ..++.+++....++++++|+|.++...+..+..+...... .....+
T Consensus 199 ---------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 199 ---------------N-----------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp ---------------S-----------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------c-----------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000111123456788888776555433322221111 111112
Q ss_pred ccCCCC-----c-hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy2962 416 NTANLG-----G-NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 416 ~~~~l~-----~-~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 489 (690)
..+.++ . .......+..+.++++.++.+++.||+|||+.+..+.++.++..+.+.+.+ ..+..++..++.++
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMF 324 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 111122 1 123344555677888999999999999999998888877777665554433 23334444444455
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCc
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAG-STFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPK 568 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (690)
+.....+..+.++.|.+|++.|+++.|+. +...++|++++|.+.|+.. +
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~------~------------------------ 374 (417)
T 2cfq_A 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY------E------------------------ 374 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH------H------------------------
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH------H------------------------
Confidence 55555666788999999999999999995 7888899999999998621 1
Q ss_pred chhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCC
Q psy2962 569 EQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKL 622 (690)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l 622 (690)
..++...|.+.++++++++++.+ +.||+++.++
T Consensus 375 ---------------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 375 ---------------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp ---------------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred ---------------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 33456678888888888877765 5666655444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=5.6e-23 Score=229.65 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=124.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAP-DFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~-s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.+++.+++.++..++++++|+++||+ |||++++++.++.+++.++.++++ +++.++++|++.|++.+...+...+
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS 132 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH
Confidence 67899999999999999999999999999 999999999999999999999999 9999999999999999999999999
Q ss_pred HHhhhcCCCcchhhhhH---HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH
Q psy2962 263 LALEMVGPSKRIIAGTV---IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~---~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
++.|++|+++|+++.+. ...+.++|.+++|.+++.+. +||+.|++.++..++..+..++
T Consensus 133 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 133 FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877666 88999999999999887763 7999999988876665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.08 E-value=1.9e-09 Score=117.04 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2962 423 NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL----LPLDLNTVSIVLAMMGKFFITGAYGAV 498 (690)
Q Consensus 423 ~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~ 498 (690)
...+......+..+++.++.|++.||+|||+++..+.++.+++.++..+ .++ .+..++..++.+++.+...+..
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--SSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc--HHHHHHHHHHHHHHhhhccchH
Confidence 4556667777888999999999999999999999999999999988877 543 3455666777788888889999
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 499 YIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 499 ~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++.|.+|++.|+.++|+.+....+|.+++|.+.+.
T Consensus 141 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.97 E-value=1.9e-08 Score=108.60 Aligned_cols=119 Identities=13% Similarity=-0.052 Sum_probs=98.8
Q ss_pred hccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH---HhcCCChhHHHHHHHHHHH
Q psy2962 415 WNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVS---ALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 415 ~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~l~~ 488 (690)
...+.++. ...+......+...++.++.|++.||+|||+.+..+.++.+++.++. ...+ +.+..++..++.+
T Consensus 51 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G 128 (438)
T 3o7q_A 51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHH
Confidence 34444553 34555666777788899999999999999999999999999888877 4433 3556667777888
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.+...+....++.|.+|++.|+.++|+.+....+|.+++|.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.94 E-value=8.2e-09 Score=109.18 Aligned_cols=121 Identities=12% Similarity=-0.058 Sum_probs=99.7
Q ss_pred HhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy2962 413 LSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 413 ~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 489 (690)
.+...++++.+ .........+...++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+..++..++.++
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGM 100 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 33345556643 34555666777889999999999999999999999999988888877764 34555666677788
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+...+....+..|.+|++.|+.+.++.+....+|.+++|.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888889999999999999999999999999999999999999887
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.90 E-value=2.1e-08 Score=110.20 Aligned_cols=110 Identities=14% Similarity=-0.083 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDR-YGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFS 502 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 502 (690)
.........++..++.++.|+++|| +|||+++..+.++.+++.++..+.++ .+..++..++.+++.+...+....++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~ 133 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG--ASALFGSIILIIIGTGFLKPNVSTLV 133 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4455666778888999999999999 89999999999999988888776543 44555666777788888999999999
Q ss_pred hcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 503 AEQFPTVI--RNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 503 ~e~~p~~~--r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.|.+|++. |+.++++.+....+|.+++|.+.+.
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 99999987 7888888999999999999999886
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.88 E-value=3.7e-09 Score=113.89 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=116.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
...++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++.
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888999999999999999999999999888888888888888888888888899888877788889999
Q ss_pred hhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHH-HhcCc
Q psy2962 266 EMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWW-FIPES 325 (690)
Q Consensus 266 e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~-~lpes 325 (690)
|.+|++.|+.+.++ ++....+|.+++|.+++.+. +++..|.+.++..++..+..+ +.||.
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999888 58888999999999988763 567788887777666654433 35554
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.77 E-value=1.5e-07 Score=104.28 Aligned_cols=112 Identities=16% Similarity=-0.014 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 423 NIYLNFIISGMVEIPAYLSSMLTLDRY-GRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 423 ~~~~~~~~~~l~~i~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
..........+..+++.++.|++.||+ |||+++..+.++.+++.++..+.+. +.+..++..++.+++.+...+...++
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~ 133 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPLVSSF 133 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccchhHHHH
Confidence 355666677788889999999999999 9999999999988888888777651 24555566677778888888999999
Q ss_pred hhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy2962 502 SAEQFPTVIRNIGIGA---GSTFARVGGIFASYTSVL 535 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~---~~~~~~lg~~i~p~i~~~ 535 (690)
+.|.+|++.|+.+.+. .+....+|.+++|.+.+.
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 134 MGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999766555 888899999999988775
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.65 E-value=6e-07 Score=98.41 Aligned_cols=107 Identities=15% Similarity=0.049 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC----------------CChhHHHHHHHHHHHHHHH
Q psy2962 429 IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP----------------LDLNTVSIVLAMMGKFFIT 492 (690)
Q Consensus 429 ~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~----------------~~~~~~~~~~~~l~~~~~~ 492 (690)
....++.++|.++.|+++||+|||+++.++.++..++.++.++.+ ..+.+..++.-++.+++.+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G 141 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVG 141 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999988888877532 1234556667788889999
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+..++..++++|..|++.|+...++.+....+|.++++.+...
T Consensus 142 ~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 9999999999999999999999999999999998888877654
No 15
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=56.81 E-value=1.8e+02 Score=29.91 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy2962 391 NLFKKSVIIFFLWFV 405 (690)
Q Consensus 391 ~~~~~~l~~~~~~~~ 405 (690)
+.....+..++.|+.
T Consensus 176 n~~~~~lGt~lLW~G 190 (407)
T 3b9w_A 176 SDRFSMLGSMVLWLF 190 (407)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 344445555555553
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=29.04 E-value=16 Score=20.26 Aligned_cols=14 Identities=43% Similarity=1.006 Sum_probs=11.3
Q ss_pred HHHhhccccCCcHH
Q psy2962 205 IFGDISDRFGRKPT 218 (690)
Q Consensus 205 ~~G~lsDr~Grr~~ 218 (690)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
No 17
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=26.17 E-value=5.9e+02 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q psy2962 392 LFKKSVIIFFLWF 404 (690)
Q Consensus 392 ~~~~~l~~~~~~~ 404 (690)
.....+..++.|+
T Consensus 223 ~~~a~LGt~lLW~ 235 (490)
T 3hd6_A 223 DLFAMIGTLFLWM 235 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555554
Done!