RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2962
(690 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 374 bits (962), Expect = e-122
Identities = 179/462 (38%), Positives = 259/462 (56%), Gaps = 63/462 (13%)
Query: 163 YSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMIS 222
YS T + W LVC+ AW + + +GVLLGS +FG +SDRFGRK ++S
Sbjct: 106 YSYDTFSSTIV--TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLS 163
Query: 223 ILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHM 282
L+ V G L AF+P++ F RL+VG G+++ A VL E + +R I GT+I +
Sbjct: 164 TLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV 223
Query: 283 FFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLII 342
FFS+G +L+ +AYF+ DWR L + V+LP ++ WF+PES RWLIS+GR EEA I+
Sbjct: 224 FFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL 283
Query: 343 QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFL 402
Q +A+ N L +L+ S E++ + + S +LFR PNL K ++ + L
Sbjct: 284 QRIAKINGKKL----PAEVLSLSLEKDLSSSKK----QYSFLDLFRTPNLRKTTLCLMML 335
Query: 403 WFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILS 462
WF + +YYGL + NLGGNIYL+ ISG+VE+PA L ++L +DR GR+ + L+L+
Sbjct: 336 WFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA 395
Query: 463 GLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFA 522
G+ L++ +P+DL + LA++GKF IT A+ VY+++AE +PTV+RN+G+G ST A
Sbjct: 396 GVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMA 455
Query: 523 RVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILID 582
RVG I + + L YLG
Sbjct: 456 RVGSIISPF--------LVYLG-------------------------------------- 469
Query: 583 QVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLPE 624
E WL LP ++FG L+L AGIL+L LPET LPE
Sbjct: 470 -------EKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 119 bits (301), Expect = 8e-29
Identities = 87/375 (23%), Positives = 156/375 (41%), Gaps = 38/375 (10%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD--FWTFTACRLIVG 250
+ +G L+GSL G + DRFGRK + +I ++ + L FA F+ R+IVG
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 251 ASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD------WRHL 304
G+ ++ + E+ R G++ + + G L+ A + ++ WR
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 305 DILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAP 364
L +P ++ L F+PES RWL+ KG+ EEA+ ++ + + V E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQ-------- 224
Query: 365 SPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT------YYGLS-WNT 417
EE++ L+ + K S ELFR + ++ ++ L LT YY + + T
Sbjct: 225 --EEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFET 282
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLI-LSGLCLIVSALLPL-- 474
L ++ + I+ G+V ++ +DR+GR+ L ++ L++ L
Sbjct: 283 LGLSDSLLVTIIV-GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA 341
Query: 475 ---DLNTVSIVLAM-MGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
V+IV + FF G ++ +E FP +R A A+
Sbjct: 342 KSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVR----PKAMAIATAANWLAN 397
Query: 531 Y-TSVLEAFPLSYLG 544
+ L +G
Sbjct: 398 FLIGFLFPIITGAIG 412
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 109 bits (274), Expect = 1e-25
Identities = 83/343 (24%), Positives = 140/343 (40%), Gaps = 27/343 (7%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
G+ G+L FG ++DR GR+ + SIL+ VF L A A + R + G G+
Sbjct: 64 GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFL---LIAGLAYFVHDWRHLDILVTL-PGL 313
L E R A ++ + IG +AG V WR L + + P L
Sbjct: 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL 183
Query: 314 IYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLK 373
+ L F+PES +L+SK R E + I+ A+A + A + + K
Sbjct: 184 LLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA------------PQMQAEAQSALPEQK 230
Query: 374 AQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGL-SWN---TANLGGNIYLNFI 429
A + LF+ + +V+++ L+F+ + Y L +W LG ++ L
Sbjct: 231 ATQGTKRSVFKALFQ-GKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAAT 289
Query: 430 ISGMVEIPAYLSSMLT---LDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486
+ + S++ DR G + L+L + ++ + ++ A+
Sbjct: 290 GGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLFSPTLLLLLGAIA 348
Query: 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
G FF+ G +Y A +PT IR G+G R+G I
Sbjct: 349 G-FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG 390
Score = 31.2 bits (71), Expect = 2.2
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISIL--IMDVFGTLAAFAPDFWTFTACRLIVG 250
A G ++GS+IFG ++DR G + T ++ +L + V F+P I G
Sbjct: 292 ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGA--IAG 349
Query: 251 ASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIG 287
+G Y L + R T + IG
Sbjct: 350 FFVNGGQSGLYALMALFYPTAIR---ATGVGWAIGIG 383
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 91.2 bits (227), Expect = 2e-19
Identities = 87/348 (25%), Positives = 141/348 (40%), Gaps = 29/348 (8%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISIL---IMDVFGTLAAFAPDFWTFTACRLIV 249
+ ++G +G+L G +SDRFGRK + +I L I + LAAFA R+++
Sbjct: 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLL 137
Query: 250 GASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD------WRH 303
G + + E+ + R ++ + + G L+ G WR
Sbjct: 138 GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197
Query: 304 LDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLA 363
L +P + +F+PES RWL+ KGR EEA+ + + + E +LD L
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE--LLDELEL 255
Query: 364 PSPEEE-EKLKAQNDGPKPSIFELFRHPN--LFKKSVIIFFLWFVC--SLTYYGLSW--N 416
+ EK Q S+F R LF V+ +F F ++ YY + N
Sbjct: 256 IDIKRSIEKRSVQPSW--GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN 313
Query: 417 TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL---- 472
+ +L II G V ++ +DR+GR+ L +CL V +L
Sbjct: 314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF 373
Query: 473 ----PLDLNTVSIVLAMM-GKFFITGAYGAVYIFSAEQFPTVIRNIGI 515
V+IV ++ FF G ++ +E FP +R GI
Sbjct: 374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 83.1 bits (206), Expect = 7e-17
Identities = 89/368 (24%), Positives = 133/368 (36%), Gaps = 64/368 (17%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDV----------FGTLAAFAPDFWTF 242
FL LG+++FG DR GRK T +I++L+M + + T+ +AP
Sbjct: 44 GFLAR--PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL--L 99
Query: 243 TACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWR 302
RLI G S G + A + E P KR G+ + +G LL A +
Sbjct: 100 LLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS--- 156
Query: 303 HLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLL 362
L L + W IP ++ AV ++L G L L
Sbjct: 157 -----YLLGDDALLEWGWRIP----------------FLVSAV-----LVLIGLYLRRNL 190
Query: 363 APSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYY-------GLSW 415
+P E+ + P I E K ++ L + T+Y
Sbjct: 191 EETPVFEKAQEKHKKKRGP-IAETLTKH--RKPFLLGLGLVIATTTTFYLITTYLPTYLT 247
Query: 416 NTANLGGNIYLNFI----ISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLC--LIVS 469
T L N L + I + IP LS L+ DR GR+ L +L+ L ++
Sbjct: 248 QTLGLSANSALLVLMLSLILFFITIP--LSGALS-DRIGRRPVLIIFTVLAALLAVPLLM 304
Query: 470 ALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
ALL T+ L + G + F E FPT +R GA + G IF
Sbjct: 305 ALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVR--YTGASLAYNLAGAIFG 362
Query: 530 SYTSVLEA 537
+ + A
Sbjct: 363 GFAPYIAA 370
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 81.6 bits (202), Expect = 1e-16
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 172 LTNFVMWSLVCDKAWYR---GTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDV 228
L + + L D G + +G LGSL+ G +SDRFGR+ ++ +L+ +
Sbjct: 17 LLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76
Query: 229 FGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGF 288
L AFA W R ++G ++ A L E P +R A + F +G
Sbjct: 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA 136
Query: 289 LLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIP 323
LL L + WR L +++ + GL+ F+
Sbjct: 137 LLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 53.1 bits (128), Expect = 2e-07
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 392 LFKKSVIIFFLWFVCSLTYYGLSWNTANLGG--------NIYLNFIISGMVEIPAYLSSM 443
L + +++ +F+ S YYGL L + G+ I L
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232
Query: 444 LTLDRYGRKN-FLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFS 502
L DR GR+ L L+L+ L L++ AL P + +V ++ F + A+ A+ +
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLA--LLLVALLLLGFGLGFAFPALLTLA 290
Query: 503 AEQFPTVIRNIGIGAGSTFARVGGIFASY 531
+E P R G +TF +GG
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPL 319
Score = 51.9 bits (125), Expect = 5e-07
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKP-TFMISILIMDVFGTLAAFAPDFWTFTACRLIVGA 251
+ +G +LG+L+ G +SDR GR+ +I +L+ + L A AP L++G
Sbjct: 218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277
Query: 252 STSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLP 311
F LA E+ P R A + + F S+G L LA + D + +
Sbjct: 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337
Query: 312 GLIYLAYWWFI 322
+ L +
Sbjct: 338 AALALLAALLL 348
Score = 31.5 bits (72), Expect = 1.3
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 447 DRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQF 506
DR+GR+ L L+L L ++ A L + + ++G Y A AE F
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFAS-SLWLLLVGRFLLG-LGGGALYPAAAALIAEWF 116
Query: 507 PTVIRNIGIGAGSTFARVGGIFAS 530
P R +G S +G +
Sbjct: 117 PPKERGRALGLFSAGFGLGALLGP 140
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 79.8 bits (197), Expect = 4e-16
Identities = 65/347 (18%), Positives = 118/347 (34%), Gaps = 54/347 (15%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
+G L + G +SDRFGR+ +I +L+ + L FA W R++ G
Sbjct: 42 SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGA 101
Query: 256 VFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL---IAGLAYFVHDWRHLDILVTLPG 312
+F A L + P +R A ++ F +G L + GL + WR +++ +
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILA 161
Query: 313 LIY--LAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEE 370
L+ LA P +
Sbjct: 162 LLAAVLAALLLPRP---------------------------------------PPESKRP 182
Query: 371 KLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFII 430
K + P ++L + + + F L LG + L ++
Sbjct: 183 KPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLL 242
Query: 431 SGMVEIPAYLSSMLT---LDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487
G+ + + +L DR GR+ L L+L L + ALL L +++ +++A+
Sbjct: 243 LGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL-- 300
Query: 488 KFFITGAYGAVYI----FSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+ G V+ ++ P R G +T +GG
Sbjct: 301 -LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 36.2 bits (84), Expect = 0.049
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACR---LIV 249
+ +G L+ G +SDR GR+ ++++L++ + A + L++
Sbjct: 244 GLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLL 303
Query: 250 GASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL 290
G VF L ++ +R A + + S+G L
Sbjct: 304 GFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 79.3 bits (195), Expect = 3e-15
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 47/259 (18%)
Query: 197 MGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGV 256
+G+++G+ +G ++D+ GRK +I + + F ++F + F CRL+ G G
Sbjct: 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272
Query: 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIA----------------GLAYFVHD 300
+ + E + KR + + MF+ IG + A G AY H
Sbjct: 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHS 332
Query: 301 WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEEN--------KVI 352
WR I+ P + + F+PES R+ + G+++EA +I++ + + N KV
Sbjct: 333 WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV- 391
Query: 353 LEGFVLDGLLAPSPEEEEKLKAQND-----------------GPKPSIFELFRHPNLFKK 395
F ++ + +E+E ++ ++D G + F + +
Sbjct: 392 ---FSVNHIKTIH-QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREI 446
Query: 396 SVIIFFLWFVCSLTYYGLS 414
++ + +WF S YYGLS
Sbjct: 447 TIKLMGVWFTLSFGYYGLS 465
Score = 35.7 bits (82), Expect = 0.094
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL 483
IY + + +P + S L +D+ GR L ++LS +S N+ S ++
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC----ISCFFLSFGNSESAMI 652
Query: 484 AMMGKF--FITGAYGAVYIFSAEQFPTVIRNIGIG---AGSTFARVGG--IFASYTSVLE 536
A++ F A+ A+ + + E +P+ R G A A V G IF S+ + +
Sbjct: 653 ALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITK 712
Query: 537 AFPLSYLGTSF 547
A P+ + +
Sbjct: 713 AAPILFASAAL 723
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 68.2 bits (167), Expect = 6e-12
Identities = 82/394 (20%), Positives = 140/394 (35%), Gaps = 77/394 (19%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA-----PDFWTFTAC--RLIVG 250
G L G L FG ++D+ GRK + + ++IM + T+A+ P T C R +G
Sbjct: 68 GTLAGQLFFGWLADKLGRKRVYGMELIIM-IIATVASGLSPGSSPKSVMATLCFWRFWLG 126
Query: 251 ASTSGVF------------------LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIA 292
G + ++A V A++ G I+AG ++ + GF
Sbjct: 127 VGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG----ILAGAIVALIVLAGFKHSL 182
Query: 293 GLAYFVHD------------WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKL 340
A WR L +P L+ L + IPE+ R+ ++ E
Sbjct: 183 EAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE--- 239
Query: 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF 400
QA ++ + VL + P+E EK + PK S + F H ++ +
Sbjct: 240 --QAASDMSA------VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLL 291
Query: 401 ---FLWFVCSLTYYGLS-----------WNTANLGGNIYL--------NFIISGMVEIPA 438
WF+ + +YG++ ++ N Y N II+ +P
Sbjct: 292 GTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPG 351
Query: 439 YLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL--PLDLNTVSIVLAMMGKFFITGAYG 496
Y ++ +D GRK + + V L + + + F G
Sbjct: 352 YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNA 411
Query: 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+I E FPT R+ G + + G I
Sbjct: 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQ 445
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 66.1 bits (162), Expect = 2e-11
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
GV LG+ + ++ R R+ + + + V L+A AP F R + G + +
Sbjct: 60 GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD---WRHLDILVTLPGLI 314
+A LA +V P KR A ++ ++ +L L F+ WR + + + L+
Sbjct: 120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALL 179
Query: 315 YLAY-WWFIPESAR 327
L W +P S
Sbjct: 180 ALLLLWKLLPPSEI 193
Score = 36.1 bits (84), Expect = 0.063
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
+G+L+ G ++DR R+ +L+ L A + G + S
Sbjct: 259 AGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPA- 317
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL---IAGLAY 296
L L + P +AG++ F++G L + GL
Sbjct: 318 LQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVL 359
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 66.5 bits (162), Expect = 2e-11
Identities = 83/348 (23%), Positives = 130/348 (37%), Gaps = 59/348 (16%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVA 260
G +FG ++D+FGRKP M SI+ V L+ A T R IVG +G + A
Sbjct: 68 FGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACA 127
Query: 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF------VHDWRHLDILVTLPGLI 314
A+E + A + F IG ++ AYF + WR + LP L+
Sbjct: 128 STYAVESWPKHLKSKASAFLVSGFGIGNIIA---AYFMPSFAEAYGWRAAFFVGLLPVLL 184
Query: 315 YLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKA 374
+ PES W EEAKL + ++ F L
Sbjct: 185 VIYIRARAPESKEW-------EEAKL--SGKGKHSQSAWSVFSL---------------- 219
Query: 375 QNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT-----ANLGGNIYLNFI 429
S+ LF F ++ +F + F + +G +W L G + +
Sbjct: 220 -------SMKGLFNRAQ-FPLTLCVFIVLF----SIFGANWPIFGLLPTYLAGEGFDTGV 267
Query: 430 ISGMVEIPAYLSSMLTL------DRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL 483
+S ++ A+ + + + DR G K L++S L + +P D N + +
Sbjct: 268 VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQD-NYLLLGA 326
Query: 484 AMMGKFFIT-GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+ G G G V F + FP +R +G G A G F S
Sbjct: 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNS 374
Score = 29.5 bits (66), Expect = 6.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 197 MGVLLGSLIFGDISDRFGRKPTFMISILIMDVF 229
G +LG++++G +DR G K TF I +L+ +F
Sbjct: 277 FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLF 309
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 65.7 bits (160), Expect = 3e-11
Identities = 78/371 (21%), Positives = 134/371 (36%), Gaps = 30/371 (8%)
Query: 183 DKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTF 242
D A S A + G+L+FG DR+GR+ + SI++ FAP + T
Sbjct: 48 DAAS--LISAALISRWF--GALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM 103
Query: 243 TACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---- 298
RL++G G + + +E R A ++ +++G ++ A + V
Sbjct: 104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163
Query: 299 -HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
WR L + LP + L IPE+ W + K +A+ IL G
Sbjct: 164 GDGWRALFFISILPIIFALWLRKNIPEAEDW--------KEKHAGKALVRTMVDILYGG- 214
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
+ +A Q+ G + F ++ +++F + + ++
Sbjct: 215 -EHRIANIVMTLAAAMVQSAGKRWPTF-------VYLVVLVLFANLYSHPIQDLLPTYLK 266
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSML---TLDRYGRKNFLCPCLILSGLCLIVSALLPL 474
A+LG + + I I A + + D GR+ L+ LI+
Sbjct: 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQ-LLIIPVFAIG 325
Query: 475 DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534
V + + + G +G + E FPT R G+G +GG A
Sbjct: 326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385
Query: 535 LEAFPLSYLGT 545
L A L GT
Sbjct: 386 LLAQRLDEYGT 396
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 63.6 bits (155), Expect = 2e-10
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLA-AFAPDFWTFTACRLIVGASTSGVFLV 259
G L+ G + DR+GR+ +ISI++ GTLA FAP +WT RL++G +G +
Sbjct: 70 FGGLLLGAMGDRYGRRLAMVISIVLFS-VGTLACGFAPGYWTLFIARLVIGMGMAGEYGS 128
Query: 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGL-AYFV--HDWRHLDILVTLPGLIYL 316
+ +E R A + FSIG ++ A + + V WR L + LP I
Sbjct: 129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP--IIF 186
Query: 317 AYWW--FIPESARW 328
A W +PE+ W
Sbjct: 187 ALWLRKNLPEAEDW 200
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 58.5 bits (142), Expect = 5e-09
Identities = 69/355 (19%), Positives = 132/355 (37%), Gaps = 55/355 (15%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
G ++G G + DRFG + T + I+I VF L AFA + + R+++GA+ + F
Sbjct: 41 GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF 100
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLI 314
++ S+R A ++ + +G ++ L ++ W+ I+ + G+I
Sbjct: 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160
Query: 315 YLAYWWFI----PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEE 370
+ W P+ A+WL EE K I V+ GLLA E+
Sbjct: 161 WGVLWLKFIPDPPQKAKWL----------------TEEEKYI----VVGGLLA-----EQ 195
Query: 371 KLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-VCSLTYYGLSWNTANLGGNIYLNFI 429
+ K + K I EL + ++ + F V + L+W L L+ +
Sbjct: 196 QGKGPSTPKKYQIKELLKDRRVW----GLALGQFLVNIGLGFFLTWFPTYLVQERGLSIL 251
Query: 430 ISGMVEIPAYL-----------SSMLTLDRY----GRKNFLCPCLILSGLCLIVSALLPL 474
+G + + S L L R + ++ L + + + +
Sbjct: 252 EAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNI 311
Query: 475 DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
+++V A+ ++ P I + G ++ +GGI
Sbjct: 312 PYAALALVALGFFGLGAGAIGWAL---ISDNAPGNIAGLTGGLINSLGNLGGIVG 363
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 55.7 bits (135), Expect = 4e-08
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
++G+L G+L+ G ++DR GRK ++S+ + +F A A DF + RL+ G G
Sbjct: 60 ILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG 119
Query: 256 VF--LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDI---- 306
L+A L E VGP R A ++++ G L + + WRH+
Sbjct: 120 ALPNLIA--LTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV 177
Query: 307 --LVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEE 348
L+ +P L+ ++PES + + G ++ +++A+ E
Sbjct: 178 GPLLLVPLLM-----RWLPESRAFAQAAGAGKQRAPVLRALFGE 216
Score = 30.7 bits (70), Expect = 2.6
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 467 IVSALLPLDLNTVSIVLAMMGKF---FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFAR 523
I+++L L + + G F+ G +Y + +PT +R G+GA R
Sbjct: 295 ILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR 354
Query: 524 VGGI 527
+G +
Sbjct: 355 LGSM 358
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 55.9 bits (135), Expect = 4e-08
Identities = 76/360 (21%), Positives = 152/360 (42%), Gaps = 70/360 (19%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDF-------------WTF 242
++G ++G + G S+RFGR+ + I+ ++ + L + P+F F
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISA-LGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 243 TACRLIVGASTSGVFLVAYVLALEM--VGPSKR-----------IIAGTVIHMFFSIGFL 289
R+I G GV L + + + + + P+ II G ++ F +
Sbjct: 124 VIYRIIGGI---GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180
Query: 290 LIAGLAYFVHD-WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEE 348
++ D WR++ +P L++L +F+PE+ R+L+S+G+ E+A+ I++ +
Sbjct: 181 RSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240
Query: 349 NKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF------FL 402
+ + +++K D + + +L +F VI+ F
Sbjct: 241 TL--------------ATQALQEIKHSLDHGRKTGGKLL----MFGVGVIVIGVMLSVFQ 282
Query: 403 WFV---CSLTYYGLSWNTANLGGNI-YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPC 458
FV L Y + T +I L II G++ + + +++T+D++GRK P
Sbjct: 283 QFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK----PL 338
Query: 459 LILSGLCLIVSA--LLPLDLNTVSIVLAMMGKFFITGAY----GAV-YIFSAEQFPTVIR 511
I+ L + + L ++A++ F A+ G V ++ +E FP IR
Sbjct: 339 QIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 398
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 51.5 bits (124), Expect = 7e-08
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
G L+ S + G ++DRFGRKP ++ + I + + A + + R + G +
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRH----LDILVTLPGL 313
+ L ++ P +R +A ++ ++G LL L + + L L
Sbjct: 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129
Query: 314 IYLAYWWFIPES 325
++ + +PE+
Sbjct: 130 AFILLAFLLPET 141
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 50.5 bits (121), Expect = 2e-06
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 59/289 (20%)
Query: 189 GTSDAFLMMGV-----LLGSLIFGDISDRFGRKPTFMISILIMDV----FGTLAAFAPDF 239
GT AF GV LG ++FG DR GRK M+++ +M + G L +F+
Sbjct: 62 GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG 121
Query: 240 W----TFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA 295
W R I G + G + A +LA+E +K+ + + + + +G LL GL
Sbjct: 122 WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181
Query: 296 YFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEG 355
I + +L++ W IP +L S I+ ++L
Sbjct: 182 SL--------ISMMTTDEQFLSWGWRIP----FLFS---------IV--------LVLIA 212
Query: 356 FVLDGLLAPSPEEEEKLKAQNDGPK--PSIFELFRHPNLFKKSVIIFF--LWFVCSLTYY 411
+ + S E E++ Q K P I L RHP F K + + L + +T +
Sbjct: 213 LWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAF 272
Query: 412 GLSWNTANLG--GNIYLN--FIISGM--VEIP--AYLSSMLTLDRYGRK 452
L+++T NLG ++LN ++ G+ + IP A+L+ DR+GR+
Sbjct: 273 ALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLA-----DRFGRR 316
Score = 30.5 bits (69), Expect = 3.6
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 24/152 (15%)
Query: 191 SDAFLMMGVLLGSL------IFGDISDRFGRKPTFMISILIMDVFGTLAAF--------A 236
+ FL +G+L+G L F ++DRFGR+ ++ LI GTL+AF
Sbjct: 285 RELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI----GTLSAFPFFMALEAQ 340
Query: 237 PDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSI---GF--LLI 291
FW ++ + V V + EM G S R V + S+ GF +
Sbjct: 341 SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIA 400
Query: 292 AGLAYFVH-DWRHLDILVTLPGLIYLAYWWFI 322
A L + W + I + LI +
Sbjct: 401 AALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 43.7 bits (104), Expect = 2e-04
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVG 250
+ +LG+ ++ ++ RFG+K TF++ +L+ + L F P W F ++ G
Sbjct: 264 LIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAG 323
Query: 251 ASTSGVFLVAYVLALEMV 268
L+ + + ++V
Sbjct: 324 IGLGLATLLPWAMLADVV 341
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 43.7 bits (103), Expect = 2e-04
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 205 IFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWT----FTACRLIVGASTSGVFLVA 260
+ G +SDR GR+P + LI TLA A F T F R I G S + V
Sbjct: 70 LLGPLSDRIGRRPVLITGALIF----TLACAATLFTTSMTQFLIARFIQGTSICFIATVG 125
Query: 261 YVLALEMVGPSKRI----IAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYL 316
YV E G +K I I +++ + IG L A L +FVH W+ L ++ + GLI
Sbjct: 126 YVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF 184
Query: 317 AYWWF-IPESAR 327
+PE+ +
Sbjct: 185 VGLLLAMPETVK 196
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 42.8 bits (101), Expect = 4e-04
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 190 TSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLI- 248
T +L+ G G L++G +SDR+GR+P ++ + I + A + + T R +
Sbjct: 45 TLTLYLL-GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQ 103
Query: 249 -VGASTSGVFLVAYVLALEMVGPSKRIIAG-TVIHMFFSIGFLLIAGLAYFVHDWRHLDI 306
GAS V A V + RI + + L+ G W +
Sbjct: 104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163
Query: 307 LVTLPGLIYLA-YWWFIPES 325
++L G++ A ++ +PE+
Sbjct: 164 FLSLAGILLSALIFFILPET 183
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 39.6 bits (93), Expect = 0.004
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVF-GTLAAFAPDFWTFT 243
+ + G A +G LLG+L+ G + F R +I ++ + + P+F F
Sbjct: 246 STHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL 305
Query: 244 ACRLIVGASTSGVFLVAYVLALEMVGPSK---RIIA--GTVIHMFFSIGFLLIAGLA 295
+G G V L+ P++ R+ ++ H + +G +L LA
Sbjct: 306 VLWFAIGV-GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 39.1 bits (92), Expect = 0.007
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 204 LIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGAST 253
L +G +SDR GR+P ++ + I + +A FA A I G T
Sbjct: 61 LFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT 110
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 38.1 bits (89), Expect = 0.012
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGAS 252
++ +GV++G+ I S R+ K + + + + + + + RL+ G
Sbjct: 45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP 104
Query: 253 TSGVFLVAYVLALEMVGPSKR------IIAGTVI-------------HMF-FSIGFLLIA 292
F V ++ +++ P K +++G + F + FLLIA
Sbjct: 105 HGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164
Query: 293 --GLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLI 330
+A + + + + F+ A WLI
Sbjct: 165 VFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLI 204
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 36.8 bits (86), Expect = 0.035
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGAS 252
A+L G+ L L+ G +SDR GR+P + + + A FT R + G
Sbjct: 56 AYLAGGMFLQWLL-GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIG 114
Query: 253 TSGVFLVAY 261
+ V Y
Sbjct: 115 LCFIGAVGY 123
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 36.4 bits (85), Expect = 0.048
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLI--VGASTSG 255
G LG L++G +SDR+GRKP + + + + + R + VG ++
Sbjct: 53 GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA 112
Query: 256 V 256
V
Sbjct: 113 V 113
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 36.2 bits (84), Expect = 0.059
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDV----------FGTLAAFAPDFWTFTACRLIVG 250
LG L FG + D++GR+ I+I+IM + + T+ +AP C++ G
Sbjct: 72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPIL--LLLCKMAQG 129
Query: 251 ASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSI-GFLLIAGL 294
S G + A + E KR G+ + F SI GF+L AG+
Sbjct: 130 FSVGGEYTGASIFVAEYSPDRKRGFMGSWLD-FGSIAGFVLGAGV 173
Score = 29.3 bits (66), Expect = 8.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 195 LMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF 235
+M+G+L + G +SDRFGR+P F+I + + AF
Sbjct: 295 IMIGMLFVQPVMGLLSDRFGRRP-FVILGSVALFVLAIPAF 334
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 35.4 bits (82), Expect = 0.090
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 200 LLGSLIFGDISDRFGRKPTFMISILIMD---VFGTLAAFAPDFWTFTACRLIVGASTSGV 256
LG++I G + +RFG KP MI ++I+ ++ DFW L+VG S G
Sbjct: 302 ALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFW---ILGLLVGTSLGGA 358
Query: 257 FLVAYVLALEMVGPSK 272
+ +V K
Sbjct: 359 QASSRSYLARLVPKGK 374
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 35.1 bits (79), Expect = 0.12
Identities = 55/284 (19%), Positives = 94/284 (33%), Gaps = 5/284 (1%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD--FWTFTACRLIVG 250
+ +G +GSL+ G + DR+GR+ +I +L+ + L A AP+ RL+ G
Sbjct: 46 SAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG 105
Query: 251 ASTSGVFLVAYVLALEMVGPSKR--IIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILV 308
G+ VA L E + + G V ++G L LA +
Sbjct: 106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165
Query: 309 TLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEE 368
L I L+ + + A+ E K++L +L
Sbjct: 166 AFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGL-ALIELGKLLLLLLILLLGGLVLLLL 224
Query: 369 EEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNF 428
L A G + + L +I + L G G +
Sbjct: 225 GLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALI 284
Query: 429 IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL 472
++ + + L +DR GR L L+ L L + L+
Sbjct: 285 LLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLV 328
>gnl|CDD|119347 cd06555, ASCH_PF0470_like, ASC-1 homology domain, subfamily similar
to Pyrococcus furiosus Pf0470. The ASCH domain, a small
beta-barrel domain found in all three kingdoms of life,
resembles the RNA-binding PUA domain and may also
interact with RNA. ASCH has been proposed to function as
an RNA-binding domain during coactivation,
RNA-processing and the regulation of prokaryotic
translation.
Length = 109
Score = 31.4 bits (72), Expect = 0.39
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 528 FASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVI 579
+ S+ +LE L +G +I + TYK KEQ +YGV I
Sbjct: 59 YDSFRELLEEEGLEKVG-----PGVDSIEEGVKDTYKIYSKEQEKKYGVLAI 105
>gnl|CDD|236614 PRK09705, cynX, putative cyanate transporter; Provisional.
Length = 393
Score = 33.2 bits (76), Expect = 0.43
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 27/161 (16%)
Query: 183 DKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDV----FGTLAAFAPD 238
A Y G+ A + +G G+L+ ++ R+ M+++++ V F L P
Sbjct: 237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV 296
Query: 239 FWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA--- 295
W ++ G G F + +LAL+ + IAG ++ IGF +IAGLA
Sbjct: 297 LWA-----MVCGLGLGGAFPLCLLLALDHSV--QPAIAGKLVAFMQGIGF-IIAGLAPWF 348
Query: 296 ---------YFVHDWRHLDILVTLPGLIYLAYWWFIPESAR 327
++ DW + V + + F P
Sbjct: 349 SGVLRSISGNYLMDWAFHALCVV---GLMIITLRFAPARFP 386
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 33.0 bits (76), Expect = 0.51
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 190 TSDAFLM--MGVLLGSL---IFGDISDRFGRKPTFMISILIMDVFGTLAAFA---PDFWT 241
L+ + +L+G+L +G ++DRFG + ++S+L++ + AFA P W
Sbjct: 48 EGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ 107
Query: 242 FTACRLIVG 250
L++G
Sbjct: 108 LLVIGLLLG 116
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 32.9 bits (75), Expect = 0.60
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 194 FLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL 232
FLM + G +FG I+D+ GRK + +IS+ +M FG+L
Sbjct: 73 FLMRPI--GGWLFGRIADKHGRKKSMLISVCMM-CFGSL 108
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 32.6 bits (75), Expect = 0.67
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA 236
+ ++G +G L +G ++D FGRKP IL + LAA A
Sbjct: 33 SAYILGFAIGQLFYGPMADSFGRKPV----ILGGTLVFALAAVA 72
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 31.5 bits (72), Expect = 1.6
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVG 250
+ + L+G L+F + +FGRK F IL+M V G L F + ++ G
Sbjct: 264 SIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLM-VLGYLIFFFAGSNLPLILVLIILAG 322
Query: 251 ASTSGVFLVAYVLALEMV 268
+ V + + L + V
Sbjct: 323 FGQNFVTGLVWALVADTV 340
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 31.3 bits (72), Expect = 2.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGA--GSTFARV-GGIF 528
V + L + ++ +G V+ P V+ G GA + FARV GGI+
Sbjct: 124 VVGLGLLGLSLLYL--LFGGVFGTGPPDAPEVLVGFGFGASLIALFARVGGGIY 175
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 31.0 bits (71), Expect = 2.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 285 SIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIP 323
SI FL I AY DW + + +P LA ++FIP
Sbjct: 56 SITFLAIPAKAY-ATDWNYFVGNLAIPLAAPLAAYFFIP 93
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 30.8 bits (70), Expect = 2.2
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 185 AWYRGTS--DAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTF 242
A + T+ AF++M VL FG + DRFG ++S+L+ V L AP W
Sbjct: 251 AGFTLTAFGGAFVLMRVL-----FGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVA 305
Query: 243 TACRLIVGASTSGVF 257
A + GA S +F
Sbjct: 306 LAGAALTGAGCSLIF 320
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 30.8 bits (70), Expect = 2.8
Identities = 56/349 (16%), Positives = 107/349 (30%), Gaps = 49/349 (14%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVA 260
+ + G +SDR + I +++ + F+ W A + G +
Sbjct: 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPC 104
Query: 261 YVLALEMVGPSKRIIAGTV--IHMFFSIGF---LLIAGLAYFVHDWRHLDILVTLPGLIY 315
+ S+R + G L++ G+A W + I+ + +I
Sbjct: 105 GRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVPGIIAIIV 163
Query: 316 LAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQ 375
+ F+ R+ G + + + K +
Sbjct: 164 -SLICFL---------LLRDSPQS--------------CGLPPAEEMPNEEPDGDAEKKE 199
Query: 376 NDGPKPSIF--ELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANL----------GGN 423
+ K IF + + L+ I FV + L W+ L
Sbjct: 200 EELTKKQIFLQYVLLNKVLW---YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASW 256
Query: 424 IYLNFIISGMVEIPA--YLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSI 481
+ + + G+V +LS L R G LI+ + L+V L P + +
Sbjct: 257 AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII--VSLLVYWLNPAANPLMDL 314
Query: 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+ F + G + + ++E P G FA +GGI A
Sbjct: 315 ICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAG 363
>gnl|CDD|215201 PLN02351, PLN02351, cytochromes b561 family protein.
Length = 242
Score = 30.3 bits (68), Expect = 2.9
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 247 LIVGASTSGVFLVAYVLALEMVGPSKRIIAGT--------VIH-MFFSIGFLLIAGLAYF 297
L++ A SG+ + VL + S + T V+H + IGF+LI+G A
Sbjct: 12 LLLFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAIL 71
Query: 298 VHDW 301
VH W
Sbjct: 72 VHRW 75
>gnl|CDD|220074 pfam08925, DUF1907, Domain of Unknown Function (DUF1907). The
structure of this domain displays an
alpha-beta-beta-alpha four layer topology, with an
HxHxxxxxxxxxH motif that coordinates a zinc ion, and an
acetate anion at a site that likely supports the
enzymatic activity of an ester hydrolase.
Length = 283
Score = 30.0 bits (68), Expect = 3.7
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 23/99 (23%)
Query: 456 CP-------CLILSGLC---LIVSA-----LLPL-------DLNTVSIVLAMMGKFFITG 493
CP L +SGLC I LLPL DLN+++ + + G F+ G
Sbjct: 20 CPDLRKPPFGLAVSGLCGKPRIADVGGPPYLLPLVQRDKLYDLNSIAKEMELPGAVFVIG 79
Query: 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYT 532
A GA ++ N+ + G AS
Sbjct: 80 A-GAGPFPIVGSNCEMMFNVSTEPEGSVVVNGSYIASVN 117
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 30.0 bits (68), Expect = 4.1
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 204 LIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263
+ G ++ RFG + F+IS + L AP+ R+I G + +++
Sbjct: 55 PLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST 114
Query: 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD---WRHLDILVTLPGLIYLAYWW 320
L + P KR A + + + L L ++ + WR + ++ G+I + +
Sbjct: 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF 174
Query: 321 FI 322
FI
Sbjct: 175 FI 176
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 30.4 bits (69), Expect = 4.2
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 217 PTFMISILIMDVFGTLAAFAPDFW--TFTACRLIVGASTSGVFLVAYVLALEMVGPS-KR 273
P ++ I+ VF TL F D + IVGA T V V + +G S
Sbjct: 208 PGAVLFAGIVGVF-TLVQFILDLFRGRSPEYLAIVGAVTFAVAAVLVLPFGFKLGFSATY 266
Query: 274 IIAGTVIHMFFSI-GFLLIAGLAYFVH----DWRHLDI-LVTLPGLIYLAYWWFIPESAR 327
+ + G +L+AGL+ F + + L L L +P+
Sbjct: 267 YSLFQPLALLGVALGAVLLAGLSRFWERKDLPRYYYPAAVAGLAALGILVLALALPDLFS 326
Query: 328 WLIS 331
+ +
Sbjct: 327 LINN 330
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 30.0 bits (68), Expect = 4.3
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
+ G+ L G I+DR GRKP + + + L + A F A R + G
Sbjct: 48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGC 107
Query: 256 VFLVAY 261
++VA+
Sbjct: 108 CYVVAF 113
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 30.0 bits (67), Expect = 5.2
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 197 MGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA-FAPDFWTFTACRLIVGAS 252
MG + L+ G ++DRFGR+P F+I+ I+ + G + A F T A ++G +
Sbjct: 89 MGQAVSILMMGRLTDRFGRRP-FVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGVA 144
>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein;
Provisional.
Length = 381
Score = 29.6 bits (67), Expect = 5.6
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTAC 245
W G + G L+G+L+ G + R G ++ ++ LI FW++ A
Sbjct: 41 WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAW 100
Query: 246 RLIVGASTSGVFLV 259
R + G + +++V
Sbjct: 101 RFVAGIGCAMIWVV 114
>gnl|CDD|223674 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 29.4 bits (67), Expect = 5.8
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 217 PTFMISILIMDVFGTLAAFAPDFWTFTACRLI--VGASTSGVFLVAYVLALEMVGPSKRI 274
++++L+ G LAA W R++ +G S F + +L L
Sbjct: 104 VALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIP-SFWLGLLLIL--------- 153
Query: 275 IAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDIL--VTLPGLIYLAYW 319
+ + G F+ +HL IL +TL GL+ LA
Sbjct: 154 LFSVKLGWLPVGGRGSAGSWDSFLDALKHL-ILPALTL-GLVSLAGI 198
>gnl|CDD|150508 pfam09846, DUF2073, Uncharacterized protein conserved in archaea
(DUF2073). This archaeal protein has no known function.
Length = 104
Score = 28.0 bits (63), Expect = 6.1
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKL 372
E+ +LI+ V + N V+LEG GL +PEEE KL
Sbjct: 8 EKIRLILDDVRDGNIVVLEG----GL---TPEEEAKL 37
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 29.5 bits (66), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVG 250
+ S +G ++DR GRK + S L M + L A + W F R ++G
Sbjct: 69 IASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLG 118
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.5 bits (67), Expect = 7.5
Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLI-VGA 251
++ + +I G+ D + ++ + ++ D ++ RL+ +G
Sbjct: 512 GKYLIIGGVVLIILGEGIDGK----SLGGALGGLGLYEITGYLG-DVLSYA--RLMALGL 564
Query: 252 STSGVFLVAYVLALEMVGPS--KRIIAGTVIHMFFSIGFLLIAGLAYFVHDWR 302
+ +G+ + ++A + II G +I +F + + ++ L FVH R
Sbjct: 565 AGAGIAMAFNLMAGLLPPSIGVIGIIVGIIIFIFGHLLNIALSILGAFVHGLR 617
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction
only].
Length = 258
Score = 28.9 bits (65), Expect = 8.0
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 17/138 (12%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRK--PTFMISILIMDVFGTLAAFAPD---------FWT 241
++G LG+L+ + + ++ + + + G A A D F
Sbjct: 81 LGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAEDRAARLRPLLFAL 140
Query: 242 FTACRLIVGASTS-----GVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAY 296
+ G + G F + L L ++ P K + T + + + A +
Sbjct: 141 ALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLK-LAVATSLAIILNTASNGAALYLF 199
Query: 297 FVHDWRHLDILVTLPGLI 314
+ L+ G I
Sbjct: 200 ALGAVDWPLALLLAVGSI 217
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 29.2 bits (66), Expect = 9.0
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 341 IIQAVAEENKVILEGFVLDGLL--APSPEEEEKLKAQNDGP----KPSIF--ELFRHPNL 392
I+QA+ E ++ +L +L+ LL AP+ EE +KLK P + F EL + P L
Sbjct: 100 IVQAILEMDESVLGLELLENLLKMAPTKEELKKLKEYKGDPSKLGRAEQFLLELSKIPRL 159
Query: 393 FKK-SVIIF 400
++ ++F
Sbjct: 160 EERLEALLF 168
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 29.3 bits (65), Expect = 9.5
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 375 QNDGPKPSIFELFRHPNLFKKSVIIFFLWF 404
G S+ + F +P L S IF F
Sbjct: 513 NRLGELWSLLQEFLNPGLLGTSFAIFTRLF 542
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.442
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,540,344
Number of extensions: 3757999
Number of successful extensions: 5426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5338
Number of HSP's successfully gapped: 240
Length of query: 690
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 586
Effective length of database: 6,324,786
Effective search space: 3706324596
Effective search space used: 3706324596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)