RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2962
(690 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 63.5 bits (155), Expect = 8e-11
Identities = 52/355 (14%), Positives = 103/355 (29%), Gaps = 57/355 (16%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD----FWTFTACRLIVGASTSGV 256
I G +SDR + +++ F P + G
Sbjct: 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136
Query: 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIG----FLLIAGLAYFVHDWRHLDILVTLPG 312
+ + +R +V + ++G LL + +DW +
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196
Query: 313 LIYLAYWWFI----PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEE 368
++ + + + P+S EE K P++
Sbjct: 197 ILVALFAFAMMRDTPQSCGL----PPIEEYKNDY-----------------------PDD 229
Query: 369 EEKLKAQNDGPKPSIF-ELFRHPNL--------FKKSVIIFFL-WFVCSLT-YYGLSWNT 417
+ Q K + + L F + L W L + +
Sbjct: 230 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
++ +Y I G + + ++S + R R + L + IV + P
Sbjct: 290 SSWAYFLYEYAGIPGTL-LCGWMSDKVF--RGNRGATGVFFMTLVTIATIVYWMNPAGNP 346
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAG--STFARVGGIFAS 530
TV ++ ++ F I G + + + E P + G AG F +GG A+
Sbjct: 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAA 399
Score = 35.8 bits (83), Expect = 0.044
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 200 LLGSLIFGDISDRF---GRKPT--FMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTS 254
+ G+L+ G +SD+ R T F ++++ + A + C +++G
Sbjct: 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 361
Query: 255 GVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA 295
G ++ + ALE+ A +F +G + A
Sbjct: 362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 55.7 bits (135), Expect = 2e-08
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
++ + L +G ISDR GR+P ++ + I + +A A + G T
Sbjct: 45 LLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGV 104
Query: 256 VFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL---IAGLAYFVHDWRHLDILVTLPG 312
++A L ++ ++ A ++++M + LL I GL + +WR + + +
Sbjct: 105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164
Query: 313 LI-YLAYWWFIPES 325
+ ++PE+
Sbjct: 165 AGVTFSMARWMPET 178
Score = 29.1 bits (66), Expect = 4.6
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 16/140 (11%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL-----AAFAPDFWTFTACRL 247
+ G+ G + RF S++ + G L + WT
Sbjct: 242 ILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAA 299
Query: 248 IVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----HDWR 302
+ +F +A A+E +AGT + + + LA
Sbjct: 300 LFFFGAGMLFPLATSGAMEPFPF----LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355
Query: 303 HLDILVTLPGLIYLAYWWFI 322
L +L+TL GL+ + W +
Sbjct: 356 SLGLLMTLMGLLIVLCWLPL 375
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 2e-07
Identities = 72/479 (15%), Positives = 125/479 (26%), Gaps = 166/479 (34%)
Query: 281 HMFFSIGFLLIAGLAYFVHDWRHLDIL-VTLPGLIYLAYWWFIPESARWLISKGRNEEAK 339
HM F G H +++ DIL V + + + + ++SK EE
Sbjct: 6 HMDFETG----------EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---EEID 52
Query: 340 LIIQAVAEENKV-------------ILEGFVLDGL---------------LAPSPE---- 367
II + + +++ FV + L PS
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 368 EEEKLKAQNDGP----------------KPSIFELFRHPNL-------FKKSVI------ 398
E++ + ND + ++ EL N+ K+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 399 -----------IFFLWFVCSLTYYGLSWNTANLGGNIYLNF---------IISGMVEIPA 438
IF+L + + L I N+ I + I A
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 439 YLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD-LNTVSIVLAMMG--KFFITGAY 495
L +L Y CL+V L + A K +T +
Sbjct: 233 ELRRLLKSKPYEN-------------CLLV-----LLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 496 GAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV------LEA---FPL--SYLG 544
V F + T I T V + Y E P S +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 545 TS----------FEYYNSSTITKKCLITYKTM-PKEQITRYGVTVILIDQVF----LLQV 589
S +++ N +T + + P E + + LL +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 590 EIWLPLPF-----LM--FGVLSL--------TAGILSLILPE--------THHKKLPES 625
IW + ++ SL T I S+ L H+ + +
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Score = 51.4 bits (122), Expect = 1e-06
Identities = 64/440 (14%), Positives = 124/440 (28%), Gaps = 142/440 (32%)
Query: 125 WL-----FDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWS 179
WL PE TV E+L ++ D + D + I+ + + L +
Sbjct: 186 WLNLKNCNSPE---TVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 180 ------LVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLA 233
LV +AF ++S + IL+ F +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAF-------------NLSCK----------ILLTTRFKQVT 278
Query: 234 AFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFF--------S 285
F + A+T+ + L + + L K ++ + +
Sbjct: 279 DF------------LSAATTTHISLDHHSMTLTP-DEVKSLLL-KYLDCRPQDLPREVLT 324
Query: 286 IGFLLIAGLAYFVHD-------WRHLD-------ILVTL----PGLIYLAYWWF------ 321
++ +A + D W+H++ I +L P +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 322 --IPE---SARWLISKGRNEE---AKLIIQAVAE----ENKVILEGFVLDGLLAPSPEEE 369
IP S W + KL ++ E E+ + + L+ L E E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENE 442
Query: 370 EKLKAQ-------------NDGPKPSIFELF-----RH---------PNLFKKSVIIF-- 400
L +D P + + F H LF+ +F
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---VFLD 499
Query: 401 FLWFVCSLTYYGLSWNTANLGGN------IYLNFIISGMVEIPAYLSSMLT-LDRYGRKN 453
F + + + +WN + N Y +I + ++++L L +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 454 FLCPCLILSGLCLIVSALLP 473
L+ AL+
Sbjct: 560 ICSKY-----TDLLRIALMA 574
Score = 29.4 bits (65), Expect = 5.2
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 19/81 (23%)
Query: 6 RMRHEILVKTGATVGGILPLFGGFPGRTSLYL-FI----NSFSRLSVRLMMFLIQI--DI 58
++RH+ G IL Y +I + RL ++ FL +I ++
Sbjct: 506 KIRHDSTAWNA--SGSILNTLQQL----KFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 59 FISRC------ALPNEQDIAY 73
S+ AL E + +
Sbjct: 560 ICSKYTDLLRIALMAEDEAIF 580
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 52.6 bits (126), Expect = 2e-07
Identities = 44/358 (12%), Positives = 96/358 (26%), Gaps = 55/358 (15%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF--------APDFWTFTA 244
A + + LL +FG +SD+ G + + I M V
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 245 CRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHL 304
+ +G + ++ + MF +G+ L A + + +
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSR--RSNFEFGRARMFGCVGWALGASIVGIMFTINNQ 167
Query: 305 DILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAP 364
+ G + F +
Sbjct: 168 FVFWLGSGCALILAVLLF---------------------------------FAKTDAPSS 194
Query: 365 SPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSL------TYYGLSWNTA 418
+ + ELFR P L+ S+ + + + ++ + T
Sbjct: 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254
Query: 419 NLGGNIY-LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
G ++ + ++ + L ++R G KN L + + +I S+ +
Sbjct: 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---S 311
Query: 478 TVSIVLAMMGKFFITGAY-GAVYIFSAEQFPTVIRNIGIGAGSTFAR-VGGIFASYTS 533
+ +V+ F + + QF F + + IF S +
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Score = 32.6 bits (74), Expect = 0.44
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 4/123 (3%)
Query: 204 LIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263
I +R G K +++ IM V ++FA + + + + +
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Query: 264 ALEMVGPSKRIIAGTVIHMFFS----IGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYW 319
V FF I ++AG Y ++ +++ L L +
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 320 WFI 322
F
Sbjct: 397 VFT 399
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 4e-06
Identities = 92/548 (16%), Positives = 152/548 (27%), Gaps = 240/548 (43%)
Query: 26 FGGF------PGRTSLY-----LFINSFSRLSVRLMMFLIQIDI--FISRCALPNEQDI- 71
F G+ P + + L + F +L DI ++ L E D
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFEN------CYLEGNDIHALAAK--LLQENDTT 115
Query: 72 ---------AYFT-------PLSPNASS-LSYPWDSVQKSYSSCVRYDANFTPEYYA--G 112
Y T P ++S L + +V + +A A G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSAL---FRAVGEG-------NAQL----VAIFG 161
Query: 113 GQSANNTVPCDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVL 172
GQ + F+ E L R L L DL I++S T L
Sbjct: 162 GQGNTDDY------FE--------E-L----RDLYQTYHVLVGDL---IKFSAET----L 195
Query: 173 TNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPT--FMISI-----LI 225
+ + +L +K + +G ++ L + P +++SI LI
Sbjct: 196 SELIRTTLDAEKVFTQG----LNILEWL----------ENPSNTPDKDYLLSIPISCPLI 241
Query: 226 MDVFGTLAAFAPDFWTFTACRL-----------IVGAST--SGVFLVAYVLALEMVGPSK 272
+ A +L + GA+ G+ + A +A S
Sbjct: 242 -----GVIQLA---HYVVTAKLLGFTPGELRSYLKGATGHSQGL-VTAVAIAETDSWESF 292
Query: 273 RIIAGTVIHMFFSIGF------------------------------LLIAGLAY-FVHDW 301
+ I + F IG L I+ L V D
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD- 351
Query: 302 RHLDIL-VTLPG--LIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVI------ 352
+++ LP + ++ L+ N +N V+
Sbjct: 352 -YVNKTNSHLPAGKQVEIS-----------LV----N----------GAKNLVVSGPPQS 385
Query: 353 LEGFV--LDGLLAPS-------PEEEEKLKAQND-GPKPSIFELFRHPNLFKKSVIIFFL 402
L G L APS P E KLK N P + F H +L + +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---VASPF-HSHLLVPASDLINK 441
Query: 403 WFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAY----------LSSMLTLDRYGRK 452
L +S+N ++ IP Y LS ++
Sbjct: 442 D----LVKNNVSFNAKDIQ--------------IPVYDTFDGSDLRVLSGSISER----- 478
Query: 453 NFLCPCLI 460
+ C+I
Sbjct: 479 --IVDCII 484
Score = 35.8 bits (82), Expect = 0.058
Identities = 59/385 (15%), Positives = 95/385 (24%), Gaps = 151/385 (39%)
Query: 364 PSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGN 423
P P E A +D P + EL FL +V SL
Sbjct: 42 PEPTEGF---AADDEPT-TPAELVGK-----------FLGYVSSLVEPS----------- 75
Query: 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL 483
++ + + +L I + + + LL + T+
Sbjct: 76 -----------KVGQFDQVLNLCLTEFENCYLEGNDIHA----LAAKLLQENDTTLVKT- 119
Query: 484 AMMGKFFITGAYGAVYI----FSAEQFPTVIRNIGIGAGSTFARVGG------------- 526
K I A + F + + R +G G A GG
Sbjct: 120 ----KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 527 IFASYTSVLEAF---------PLS--------YLGTSF---------------EYYNSST 554
++ +Y ++ L +Y S
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 555 ITKKC-LIT------YKTM-------PKEQITRY-GVTVILIDQV-------------FL 586
I+ C LI Y P E + G T V F
Sbjct: 236 IS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 587 LQVEIWLPLPFLM-------FGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGP- 638
+ V + + F + + SL IL +S+ + E V P
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILE------------DSLENNE---GVPSPM 338
Query: 639 --IQGVPRTTVQRLRVDVGPKGLPE 661
I + + VQ V+ LP
Sbjct: 339 LSISNLTQEQVQD-YVNKTNSHLPA 362
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 47.6 bits (113), Expect = 8e-06
Identities = 45/327 (13%), Positives = 87/327 (26%), Gaps = 42/327 (12%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL----AAFAPDFWTFTACRLIVGA 251
G + + G + + K + + + G AA ++ F I+ A
Sbjct: 71 YFGYFIIPIPAGILMKKLSYKAGIITGLFLY-ALGAALFWPAAEIMNYTLFLVGLFIIAA 129
Query: 252 STSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGF----LLIAGLAYFVHDWRHLDIL 307
+ A + S + F S G + L + D+L
Sbjct: 130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189
Query: 308 VTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPE 367
+ AY + S + +II A+ V+L ++ P+ +
Sbjct: 190 DKMSPEQLSAYKHSLVLSVQTPY---------MIIVAI-----VLLVALLIMLTKFPALQ 235
Query: 368 EEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLN 427
+ A+ S+ L R + + F Y G + +
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFC--------YVGAQTACWSYLIRYAVE 287
Query: 428 FIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487
I A + F + L + L + + +
Sbjct: 288 EIPGMTAGFAANYLT------GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341
Query: 488 KFFITGAYG-----AVYIFSAEQFPTV 509
F G G F + Q+PT+
Sbjct: 342 SAFAGGHVGLIALTLCSAFMSIQYPTI 368
Score = 28.4 bits (63), Expect = 8.4
Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 8/136 (5%)
Query: 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTA 244
A Y + +G G+ + + LI ++AFA
Sbjct: 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHK----VLAAYALIAMALCLISAFAGG-HVGLI 352
Query: 245 CRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFF--SIGFLLIAGLAYFVHDWR 302
+ A S + + L ++ +G + + ++ I ++ ++ +
Sbjct: 353 ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNI- 411
Query: 303 HLDILVTLPGLIYLAY 318
L+ +
Sbjct: 412 PTAELIPALCFAVIFI 427
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.074
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 323 PESAR-W-------LISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKA 374
PES R W L + Q E+ K LE + E+ EK K
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVME--QEWREKAKKDLEEW-----NQRQSEQVEKNKI 136
Query: 375 QN 376
N
Sbjct: 137 NN 138
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA
binding protein, structural genomics, NPPSFA; 1.80A
{Pyrococcus horikoshii} PDB: 1s04_A
Length = 109
Score = 28.6 bits (64), Expect = 2.5
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 528 FASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILI 581
++S+ +LE + + +I + + + +E+ +YGV I I
Sbjct: 57 YSSFKEMLEKEGIENVL-----PGVKSIEEGVKVYRQFYDEEREKKYGVVAIEI 105
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein
structure initiative, NESG, PFR14, alpha and beta
protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Length = 113
Score = 28.6 bits (64), Expect = 2.8
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 528 FASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILI 581
+ ++ VL P+ + + + K + PK + RYGV I
Sbjct: 57 YETFRQVLREEPIDKIF-----PDKPSFEKALKRFHNMYPKWKEYRYGVLAIKF 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.7
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 230 GTLAAFAPDFWTFTACRLIVGAS 252
+L +A D +A L + A+
Sbjct: 27 ASLKLYADD----SAPALAIKAT 45
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.5 bits (66), Expect = 4.5
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 341 IIQAVAEENKVILEGFVLDGLL--APSPEEEEKLKAQNDGP----KPSIF--ELFRHPNL 392
I + E N+ +L ++ L+ P PE+ + L + + F + P L
Sbjct: 105 IKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRL 164
Query: 393 FKKSVIIFF 401
+ I F
Sbjct: 165 RPRLNAILF 173
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton
pumping; HET: DMU; 2.35A {Vigna radiata}
Length = 766
Score = 29.4 bits (66), Expect = 5.1
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 483 LAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGST--FARV-GGIF 528
++ + + Y I G+G S F RV GGI+
Sbjct: 200 NGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIY 248
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.4 bits (64), Expect = 9.0
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 194 FLMMGVLLGSLIFGDISDRFGRKPTFM-ISILIMDVFGTLAAFAPD-FWTFTACRLIVGA 251
++ + + G I FG + + I + + + A FW+ + GA
Sbjct: 771 WITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQLSGA 830
Query: 252 STSGVFLVAYVLALEMVGPSKRI-IAGTVIHMFFSIGFLLIAGLAYFV 298
V ++A + I V FS G I G Y++
Sbjct: 831 -IFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYI 877
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.442
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,855,850
Number of extensions: 672381
Number of successful extensions: 1590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1581
Number of HSP's successfully gapped: 29
Length of query: 690
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 590
Effective length of database: 3,909,693
Effective search space: 2306718870
Effective search space used: 2306718870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.5 bits)