RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2962
(690 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 72.8 bits (177), Expect = 3e-14
Identities = 40/350 (11%), Positives = 93/350 (26%), Gaps = 37/350 (10%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD----FWTFTACRLIVGA 251
+ I G +SDR + +++ F P + G
Sbjct: 69 SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128
Query: 252 STSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDIL 307
+ + +R +V + ++G + L +DW +
Sbjct: 129 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188
Query: 308 VTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPE 367
++ + + + EE K +
Sbjct: 189 PAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY----------------------PDD 226
Query: 368 EEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGG----N 423
EK + + + + + + L+ ++ F++ + +
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286
Query: 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNT---VS 480
+ + IP L D+ R N + L I + + ++ V
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 346
Query: 481 IVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
++ ++ F I G + + + E P G F +GG A+
Sbjct: 347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 50.9 bits (120), Expect = 3e-07
Identities = 37/347 (10%), Positives = 77/347 (22%), Gaps = 44/347 (12%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIV--- 249
A + + LL +FG +SD+ G + + I M V L+
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 250 ---GASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDI 306
V A + MF +G+ L A + + + +
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV 169
Query: 307 LVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSP 366
G + F + +
Sbjct: 170 FWLGSGCALILAVLLF---------------------------------FAKTDAPSSAT 196
Query: 367 EEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYL 426
+ ELFR P L+ S+ + + + + +
Sbjct: 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256
Query: 427 NFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL-----PLDLNTVSI 481
+ G V L + + L + ++ +
Sbjct: 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316
Query: 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIF 528
+L + F + + + QF F + +
Sbjct: 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 32.6 bits (74), Expect = 0.16
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 341 IIQAVAEENKVILEGFVLDGLL--APSPEEEEKLKAQNDGP----KPSIF--ELFRHPNL 392
I + E N+ +L ++ L+ P PE+ + L + + F + P L
Sbjct: 29 IKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRL 88
Query: 393 FKKSVIIFF 401
+ I F
Sbjct: 89 RPRLNAILF 97
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 398
Score = 29.4 bits (65), Expect = 1.7
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 514 GIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITR 573
G G +F G + + ++A + Y+ SF S + + +++Y + + +
Sbjct: 310 GFGGAVSFEVDGDLLTTAK-FVDALKIPYIAPSFGGCES-IVDQPAIMSYWDLSQSDRAK 367
Query: 574 YGVTVILI 581
YG+ L+
Sbjct: 368 YGIMDNLV 375
>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 113
Score = 27.4 bits (61), Expect = 2.6
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 528 FASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVI 579
+ ++ VL P+ + + + K + PK + RYGV I
Sbjct: 57 YETFRQVLREEPIDKIF-----PDKPSFEKALKRFHNMYPKWKEYRYGVLAI 103
>g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of
antigens protein SpaS {Salmonella typhimurium [TaxId:
90371]}
Length = 108
Score = 26.3 bits (58), Expect = 5.3
Identities = 2/30 (6%), Positives = 8/30 (26%)
Query: 325 SARWLISKGRNEEAKLIIQAVAEENKVILE 354
+ N+ A + + ++
Sbjct: 36 PIPMISVYETNQRALAVRAYAEKVGVPVIV 65
>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 110
Score = 26.1 bits (58), Expect = 6.8
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 528 FASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVI 579
+ S+ +LE L + +I + + + +E+ +YGV I
Sbjct: 57 YNSFREMLEKEGLENVL-----PGVKSIEEGIQVYRRFYDEEKEKKYGVVAI 103
>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL1 [TaxId: 5722]}
Length = 394
Score = 27.2 bits (59), Expect = 7.0
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 2/124 (1%)
Query: 458 CLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGA 517
LI GL + + N + + + + Y + + G+
Sbjct: 248 WLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGS 307
Query: 518 GSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVT 577
TF G + +L+ L L S S I +T+ +PKE+ G+T
Sbjct: 308 MITFILKSGFEGAKK-LLDNLKLITLAVSLGGCES-LIQHPASMTHAVVPKEEREAAGIT 365
Query: 578 VILI 581
+I
Sbjct: 366 DGMI 369
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.442
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,649,726
Number of extensions: 126586
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 14
Length of query: 690
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 598
Effective length of database: 1,144,436
Effective search space: 684372728
Effective search space used: 684372728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)