Query psy2964
Match_columns 208
No_of_seqs 181 out of 2075
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 22:04:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00898 2A0119 cation transp 99.9 8.2E-22 1.8E-26 164.2 16.8 158 50-208 110-267 (505)
2 KOG0255|consensus 99.9 1.9E-21 4E-26 162.7 14.8 156 52-208 103-258 (521)
3 TIGR01299 synapt_SV2 synaptic 99.9 1.3E-20 2.8E-25 161.6 19.0 152 53-208 191-358 (742)
4 TIGR02332 HpaX 4-hydroxyphenyl 99.9 9.8E-21 2.1E-25 154.1 16.8 153 52-208 31-193 (412)
5 TIGR00903 2A0129 major facilit 99.8 8.1E-20 1.7E-24 146.6 16.4 154 50-208 12-169 (368)
6 PRK10077 xylE D-xylose transpo 99.8 2.5E-19 5.4E-24 148.2 17.8 143 65-208 53-218 (479)
7 PRK15403 multidrug efflux syst 99.8 2.6E-19 5.6E-24 145.8 16.8 156 49-208 36-195 (413)
8 TIGR00887 2A0109 phosphate:H+ 99.8 3.1E-19 6.6E-24 148.8 17.2 142 66-208 55-228 (502)
9 PRK03545 putative arabinose tr 99.8 3.4E-19 7.4E-24 144.0 16.7 152 52-207 32-187 (390)
10 PRK10642 proline/glycine betai 99.8 4.2E-19 9.2E-24 147.5 17.3 135 73-208 63-216 (490)
11 COG2814 AraJ Arabinose efflux 99.8 4.5E-19 9.8E-24 140.6 16.5 152 50-205 34-189 (394)
12 PRK14995 methyl viologen resis 99.8 4.3E-19 9.4E-24 147.6 17.2 154 51-208 28-186 (495)
13 PRK10213 nepI ribonucleoside t 99.8 1.2E-18 2.6E-23 141.1 17.1 153 52-208 43-199 (394)
14 TIGR00891 2A0112 putative sial 99.8 1.3E-18 2.8E-23 140.5 16.5 153 52-208 35-192 (405)
15 PRK10406 alpha-ketoglutarate t 99.8 2.1E-18 4.5E-23 141.3 16.5 135 73-208 69-222 (432)
16 PRK10091 MFS transport protein 99.8 2.6E-18 5.6E-23 138.5 16.3 153 51-207 25-181 (382)
17 KOG0569|consensus 99.8 4E-18 8.7E-23 138.9 16.8 165 39-208 36-208 (485)
18 PRK11663 regulatory protein Uh 99.8 2E-18 4.4E-23 141.4 15.2 153 52-208 46-202 (434)
19 PRK12307 putative sialic acid 99.8 3.3E-18 7.1E-23 139.6 16.0 152 52-207 41-195 (426)
20 KOG0254|consensus 99.8 3.2E-18 6.9E-23 143.0 15.8 140 68-208 90-233 (513)
21 TIGR00893 2A0114 d-galactonate 99.8 3E-18 6.5E-23 137.4 14.8 151 53-207 18-172 (399)
22 PRK11551 putative 3-hydroxyphe 99.8 6.1E-18 1.3E-22 137.2 16.1 153 52-208 38-194 (406)
23 TIGR00711 efflux_EmrB drug res 99.8 3.3E-18 7.1E-23 141.6 14.3 152 52-207 25-180 (485)
24 PF07690 MFS_1: Major Facilita 99.8 9.8E-18 2.1E-22 132.9 16.3 148 54-205 22-173 (352)
25 TIGR00710 efflux_Bcr_CflA drug 99.8 1E-17 2.2E-22 134.6 16.5 152 52-207 28-183 (385)
26 TIGR00879 SP MFS transporter, 99.8 7.2E-18 1.6E-22 138.5 15.7 142 66-208 70-220 (481)
27 PRK11102 bicyclomycin/multidru 99.8 1.5E-17 3.2E-22 133.6 16.4 154 50-207 12-169 (377)
28 PRK09952 shikimate transporter 99.8 2E-17 4.4E-22 135.7 16.9 133 75-208 72-223 (438)
29 PRK09705 cynX putative cyanate 99.8 1.6E-17 3.5E-22 134.5 15.8 142 50-196 30-175 (393)
30 PRK10473 multidrug efflux syst 99.8 2.9E-17 6.2E-22 132.8 16.6 153 51-207 25-181 (392)
31 PRK15402 multidrug efflux syst 99.8 4.9E-17 1.1E-21 132.0 17.0 155 50-208 34-192 (406)
32 TIGR00900 2A0121 H+ Antiporter 99.8 3.2E-17 7E-22 130.4 15.7 134 65-199 32-173 (365)
33 PRK09556 uhpT sugar phosphate 99.8 1.2E-17 2.7E-22 138.0 13.5 152 52-207 52-215 (467)
34 COG2271 UhpC Sugar phosphate p 99.8 3E-18 6.4E-23 135.2 9.1 157 48-208 48-210 (448)
35 TIGR00890 2A0111 Oxalate/Forma 99.8 3E-17 6.6E-22 131.0 14.3 150 51-205 25-178 (377)
36 PRK11652 emrD multidrug resist 99.8 8E-17 1.7E-21 130.2 16.6 154 51-208 30-187 (394)
37 PRK03893 putative sialic acid 99.7 6.3E-17 1.4E-21 134.5 16.4 152 52-207 43-197 (496)
38 KOG2615|consensus 99.7 1.7E-17 3.6E-22 129.2 11.4 115 65-181 66-180 (451)
39 TIGR00881 2A0104 phosphoglycer 99.7 7.1E-18 1.5E-22 134.7 9.7 152 52-207 18-174 (379)
40 PRK11195 lysophospholipid tran 99.7 1.4E-16 3E-21 129.0 16.4 139 65-207 36-176 (393)
41 PRK12382 putative transporter; 99.7 1.5E-16 3.3E-21 128.6 16.1 147 56-206 43-200 (392)
42 PRK11043 putative transporter; 99.7 1.8E-16 3.9E-21 128.5 16.5 151 52-206 29-182 (401)
43 KOG1330|consensus 99.7 4.8E-19 1E-23 140.9 1.5 151 52-206 56-211 (493)
44 TIGR00894 2A0114euk Na(+)-depe 99.7 5.2E-17 1.1E-21 134.2 13.6 147 58-208 70-223 (465)
45 TIGR00806 rfc RFC reduced fola 99.7 1.7E-16 3.6E-21 128.5 15.9 149 52-205 49-203 (511)
46 PRK10504 putative transporter; 99.7 1.6E-16 3.4E-21 131.4 16.1 152 51-206 32-187 (471)
47 PRK03699 putative transporter; 99.7 1.3E-16 2.9E-21 129.1 15.3 143 52-198 30-176 (394)
48 TIGR00895 2A0115 benzoate tran 99.7 6.1E-17 1.3E-21 130.3 13.0 153 52-208 40-196 (398)
49 PLN00028 nitrate transmembrane 99.7 1.9E-16 4.2E-21 131.2 16.2 144 52-200 59-214 (476)
50 PRK15075 citrate-proton sympor 99.7 2.3E-16 5E-21 129.3 15.9 152 52-207 38-214 (434)
51 TIGR00886 2A0108 nitrite extru 99.7 2.2E-16 4.7E-21 126.2 15.3 148 55-207 28-191 (366)
52 PRK05122 major facilitator sup 99.7 1.3E-16 2.7E-21 129.3 14.0 148 55-206 42-200 (399)
53 PRK11646 multidrug resistance 99.7 4.4E-16 9.5E-21 126.4 16.8 147 56-206 38-187 (400)
54 TIGR00880 2_A_01_02 Multidrug 99.7 3.1E-16 6.7E-21 108.1 13.2 133 74-207 5-141 (141)
55 PRK11273 glpT sn-glycerol-3-ph 99.7 3.1E-16 6.6E-21 129.2 15.0 151 53-208 53-212 (452)
56 KOG2532|consensus 99.7 2E-16 4.3E-21 129.7 13.7 149 56-208 65-220 (466)
57 TIGR01299 synapt_SV2 synaptic 99.7 8.7E-16 1.9E-20 132.1 17.6 138 70-208 598-737 (742)
58 PRK10054 putative transporter; 99.7 7.4E-16 1.6E-20 124.9 15.8 147 56-206 35-184 (395)
59 cd06174 MFS The Major Facilita 99.7 4.2E-16 9.1E-21 123.1 14.0 141 55-199 25-168 (352)
60 TIGR00885 fucP L-fucose:H+ sym 99.7 1.3E-15 2.7E-20 124.1 16.4 143 52-198 26-200 (410)
61 TIGR00712 glpT glycerol-3-phos 99.7 5E-16 1.1E-20 127.4 14.1 143 65-208 59-210 (438)
62 KOG2533|consensus 99.7 2.7E-16 6E-21 129.4 12.1 143 65-208 79-231 (495)
63 TIGR00899 2A0120 sugar efflux 99.7 1.8E-15 3.8E-20 121.3 16.4 150 55-208 24-180 (375)
64 PRK10133 L-fucose transporter; 99.7 2.3E-15 5.1E-20 123.5 16.8 123 52-178 49-174 (438)
65 PF00083 Sugar_tr: Sugar (and 99.7 1.2E-19 2.6E-24 149.1 -9.8 142 66-208 45-195 (451)
66 TIGR00892 2A0113 monocarboxyla 99.7 1.6E-15 3.4E-20 125.1 14.5 142 52-198 42-187 (455)
67 PRK09874 drug efflux system pr 99.7 4.6E-15 1E-19 120.3 16.4 153 52-206 37-195 (408)
68 PRK03633 putative MFS family t 99.7 4.5E-15 9.7E-20 119.7 16.0 126 52-181 29-154 (381)
69 PRK10489 enterobactin exporter 99.7 1.3E-15 2.9E-20 124.1 12.6 151 53-207 41-199 (417)
70 TIGR00883 2A0106 metabolite-pr 99.7 4E-15 8.7E-20 119.5 14.8 131 77-208 45-194 (394)
71 TIGR00805 oat sodium-independe 99.7 3.3E-16 7.1E-21 133.5 8.7 151 52-206 56-282 (633)
72 PRK15034 nitrate/nitrite trans 99.6 4.7E-14 1E-18 115.4 19.8 111 58-173 64-179 (462)
73 KOG3764|consensus 99.6 1.6E-15 3.4E-20 119.0 10.5 140 64-204 103-247 (464)
74 PRK10207 dipeptide/tripeptide 99.6 4.5E-15 9.8E-20 123.2 13.7 135 57-195 43-184 (489)
75 TIGR00896 CynX cyanate transpo 99.6 1.9E-14 4.1E-19 114.9 15.7 141 50-196 21-166 (355)
76 TIGR00924 yjdL_sub1_fam amino 99.6 1.3E-14 2.9E-19 120.2 14.3 137 59-199 43-186 (475)
77 KOG0252|consensus 99.6 2.3E-15 5.1E-20 119.9 8.8 142 66-208 83-249 (538)
78 PRK08633 2-acyl-glycerophospho 99.6 2.1E-14 4.5E-19 130.3 15.9 114 67-181 47-163 (1146)
79 PRK06814 acylglycerophosphoeth 99.6 2.1E-14 4.6E-19 130.2 15.9 140 67-207 52-197 (1140)
80 TIGR00897 2A0118 polyol permea 99.6 5E-14 1.1E-18 114.4 16.3 132 54-189 38-177 (402)
81 PTZ00207 hypothetical protein; 99.6 1E-13 2.2E-18 116.4 16.6 147 52-204 50-205 (591)
82 PF06609 TRI12: Fungal trichot 99.6 6.1E-14 1.3E-18 117.3 14.6 132 65-198 76-210 (599)
83 PRK10642 proline/glycine betai 99.6 2.4E-13 5.2E-18 113.2 17.9 142 66-208 285-433 (490)
84 TIGR00901 2A0125 AmpG-related 99.5 3.6E-13 7.9E-18 107.5 15.7 150 52-207 11-181 (356)
85 PRK15011 sugar efflux transpor 99.5 7.7E-13 1.7E-17 107.2 17.1 141 65-207 250-393 (393)
86 PRK11902 ampG muropeptide tran 99.5 7.5E-13 1.6E-17 107.5 16.5 150 52-207 22-184 (402)
87 PRK15011 sugar efflux transpor 99.5 1.2E-12 2.7E-17 106.0 16.8 148 55-207 42-197 (393)
88 PRK11010 ampG muropeptide tran 99.5 1.9E-12 4.1E-17 107.8 18.2 125 82-207 60-197 (491)
89 TIGR00889 2A0110 nucleoside tr 99.5 1.9E-12 4.1E-17 105.8 17.6 141 67-207 251-405 (418)
90 KOG0253|consensus 99.5 1.9E-13 4E-18 106.7 10.5 141 65-208 111-254 (528)
91 PRK05122 major facilitator sup 99.5 2.4E-12 5.2E-17 104.3 17.4 135 69-204 251-388 (399)
92 PRK15462 dipeptide/tripeptide 99.5 7E-13 1.5E-17 109.5 14.3 137 58-198 39-182 (493)
93 PRK09584 tppB putative tripept 99.5 9E-13 1.9E-17 110.0 14.7 136 57-196 50-192 (500)
94 cd06174 MFS The Major Facilita 99.5 2E-12 4.4E-17 102.1 15.3 139 65-204 209-351 (352)
95 PRK11551 putative 3-hydroxyphe 99.5 2.7E-12 5.9E-17 104.1 15.6 135 65-200 253-391 (406)
96 COG2223 NarK Nitrate/nitrite t 99.5 4.4E-13 9.6E-18 106.1 10.4 150 53-208 38-197 (417)
97 PRK09528 lacY galactoside perm 99.5 2.8E-12 6.1E-17 104.7 15.5 139 67-205 262-404 (420)
98 TIGR00899 2A0120 sugar efflux 99.5 5.8E-12 1.3E-16 100.9 16.6 140 65-206 233-375 (375)
99 PRK12382 putative transporter; 99.5 7.2E-12 1.6E-16 101.3 16.7 131 69-200 251-384 (392)
100 TIGR00890 2A0111 Oxalate/Forma 99.4 1.7E-12 3.6E-17 103.7 12.6 132 65-197 238-374 (377)
101 PRK09952 shikimate transporter 99.4 1.3E-11 2.8E-16 101.5 17.8 137 71-207 290-435 (438)
102 TIGR00898 2A0119 cation transp 99.4 9.2E-12 2E-16 103.9 16.5 137 71-208 359-498 (505)
103 PRK11128 putative 3-phenylprop 99.4 4E-12 8.6E-17 102.6 13.7 147 52-206 27-180 (382)
104 KOG0569|consensus 99.4 7.8E-12 1.7E-16 102.4 15.2 143 65-208 303-458 (485)
105 PRK09874 drug efflux system pr 99.4 9.6E-12 2.1E-16 100.9 14.6 130 69-199 260-392 (408)
106 TIGR00882 2A0105 oligosacchari 99.4 1.1E-11 2.3E-16 100.5 13.8 144 57-206 31-185 (396)
107 PRK10489 enterobactin exporter 99.4 2.9E-11 6.2E-16 98.7 16.0 142 65-207 257-402 (417)
108 TIGR00902 2A0127 phenyl propri 99.4 1.8E-11 4E-16 98.8 14.2 137 51-193 26-167 (382)
109 TIGR00902 2A0127 phenyl propri 99.4 5.1E-11 1.1E-15 96.2 16.3 149 53-205 229-379 (382)
110 PF05977 MFS_3: Transmembrane 99.3 5.7E-11 1.2E-15 99.3 16.0 137 64-201 42-186 (524)
111 TIGR00879 SP MFS transporter, 99.3 1.7E-11 3.6E-16 100.8 12.6 143 65-208 317-474 (481)
112 COG0738 FucP Fucose permease [ 99.3 6.1E-11 1.3E-15 93.8 14.4 128 49-180 33-163 (422)
113 PRK03633 putative MFS family t 99.3 1.1E-10 2.3E-15 94.2 16.0 136 65-204 233-371 (381)
114 TIGR01301 GPH_sucrose GPH fami 99.3 4.4E-11 9.4E-16 98.6 13.9 150 55-208 30-222 (477)
115 KOG0253|consensus 99.3 2.2E-12 4.8E-17 100.8 5.6 130 75-205 389-519 (528)
116 PRK09556 uhpT sugar phosphate 99.3 1.4E-10 3E-15 96.1 15.8 140 57-200 287-444 (467)
117 TIGR00883 2A0106 metabolite-pr 99.3 7.9E-11 1.7E-15 94.5 13.7 130 65-194 253-390 (394)
118 PRK10077 xylE D-xylose transpo 99.3 1.1E-10 2.4E-15 96.7 14.7 140 68-208 307-461 (479)
119 PRK09528 lacY galactoside perm 99.3 8E-11 1.7E-15 96.2 13.6 141 57-203 39-189 (420)
120 KOG2504|consensus 99.3 2.5E-11 5.5E-16 100.9 10.6 142 53-199 70-215 (509)
121 PRK10406 alpha-ketoglutarate t 99.3 2.6E-10 5.7E-15 93.5 16.4 140 65-204 277-423 (432)
122 TIGR00887 2A0109 phosphate:H+ 99.3 1.2E-10 2.7E-15 97.3 14.5 133 75-208 343-492 (502)
123 PF11700 ATG22: Vacuole efflux 99.3 5.6E-10 1.2E-14 92.4 17.3 145 58-206 311-469 (477)
124 PRK03699 putative transporter; 99.3 2.4E-10 5.2E-15 92.7 14.7 142 53-199 229-374 (394)
125 PRK03545 putative arabinose tr 99.3 5.7E-10 1.2E-14 90.3 16.7 132 65-199 239-374 (390)
126 TIGR00792 gph sugar (Glycoside 99.3 8.2E-11 1.8E-15 96.4 11.7 148 56-207 27-197 (437)
127 TIGR00889 2A0110 nucleoside tr 99.2 2.7E-10 5.9E-15 93.1 14.3 143 55-208 29-183 (418)
128 PRK09705 cynX putative cyanate 99.2 5.3E-10 1.2E-14 90.7 15.8 150 53-208 229-385 (393)
129 TIGR00893 2A0114 d-galactonate 99.2 2.9E-10 6.4E-15 91.1 14.2 134 65-200 249-394 (399)
130 TIGR00900 2A0121 H+ Antiporter 99.2 3.1E-10 6.7E-15 90.3 14.1 116 65-181 245-361 (365)
131 TIGR00897 2A0118 polyol permea 99.2 7.1E-10 1.5E-14 90.2 16.3 143 53-201 246-397 (402)
132 TIGR00891 2A0112 putative sial 99.2 3.3E-10 7.2E-15 91.5 13.1 116 65-181 272-388 (405)
133 PRK03893 putative sialic acid 99.2 4.1E-10 8.8E-15 93.8 13.6 126 65-191 309-439 (496)
134 TIGR00882 2A0105 oligosacchari 99.2 1.3E-09 2.8E-14 88.4 15.6 131 67-197 254-387 (396)
135 TIGR00892 2A0113 monocarboxyla 99.2 2.9E-10 6.2E-15 94.0 11.8 133 65-198 274-414 (455)
136 PRK11128 putative 3-phenylprop 99.2 2.2E-09 4.7E-14 86.7 16.2 139 57-200 233-374 (382)
137 PRK15075 citrate-proton sympor 99.2 2E-09 4.3E-14 88.5 16.1 117 65-181 272-392 (434)
138 TIGR00895 2A0115 benzoate tran 99.2 6.1E-10 1.3E-14 89.6 12.8 115 65-180 283-397 (398)
139 PF05977 MFS_3: Transmembrane 99.2 2.6E-09 5.6E-14 89.4 16.1 131 65-196 252-385 (524)
140 PRK11010 ampG muropeptide tran 99.1 2.8E-09 6.1E-14 88.9 16.0 139 65-204 256-402 (491)
141 PRK12307 putative sialic acid 99.1 1.8E-09 4E-14 88.2 14.7 116 65-181 264-381 (426)
142 COG2270 Permeases of the major 99.1 1.7E-09 3.7E-14 86.2 12.9 145 58-206 282-430 (438)
143 PRK08633 2-acyl-glycerophospho 99.1 1.8E-09 4E-14 98.3 14.5 127 65-192 266-397 (1146)
144 TIGR00792 gph sugar (Glycoside 99.1 1.1E-08 2.3E-13 84.0 17.0 116 65-181 255-378 (437)
145 TIGR02718 sider_RhtX_FptX side 99.1 1.2E-08 2.5E-13 82.7 16.5 141 55-199 234-385 (390)
146 KOG2325|consensus 99.1 1.6E-09 3.4E-14 88.6 11.1 114 65-180 69-188 (488)
147 COG2807 CynX Cyanate permease 99.1 1.1E-08 2.4E-13 80.1 15.1 145 52-202 35-183 (395)
148 PRK11273 glpT sn-glycerol-3-ph 99.1 1E-08 2.2E-13 84.7 16.0 134 65-199 287-429 (452)
149 PRK10504 putative transporter; 99.1 1.8E-08 3.9E-13 83.5 17.0 116 65-181 295-413 (471)
150 PRK11663 regulatory protein Uh 99.0 1.2E-08 2.6E-13 83.9 15.3 133 65-198 277-417 (434)
151 TIGR00788 fbt folate/biopterin 99.0 4.6E-09 1E-13 87.2 12.9 147 55-207 52-211 (468)
152 PF01306 LacY_symp: LacY proto 99.0 1.7E-08 3.6E-13 81.5 15.6 140 66-205 258-401 (412)
153 TIGR00710 efflux_Bcr_CflA drug 99.0 2.7E-08 5.9E-13 79.9 16.1 112 65-177 240-356 (385)
154 PLN00028 nitrate transmembrane 99.0 6.1E-09 1.3E-13 86.6 11.3 138 65-204 286-432 (476)
155 TIGR00711 efflux_EmrB drug res 99.0 1.5E-08 3.3E-13 84.1 13.5 116 65-181 289-408 (485)
156 TIGR00903 2A0129 major facilit 99.0 2.9E-08 6.3E-13 79.9 14.5 148 52-207 215-367 (368)
157 TIGR00712 glpT glycerol-3-phos 99.0 1.5E-08 3.2E-13 83.4 12.9 142 65-207 285-436 (438)
158 TIGR02332 HpaX 4-hydroxyphenyl 99.0 1.1E-08 2.5E-13 83.5 11.8 128 66-194 278-410 (412)
159 PRK10054 putative transporter; 99.0 2.7E-08 5.8E-13 80.8 13.8 138 68-207 245-387 (395)
160 TIGR02718 sider_RhtX_FptX side 98.9 5.2E-08 1.1E-12 78.9 15.2 148 52-203 24-182 (390)
161 PF03825 Nuc_H_symport: Nucleo 98.9 1.3E-07 2.9E-12 76.8 17.5 140 68-207 244-398 (400)
162 TIGR00881 2A0104 phosphoglycer 98.9 1.6E-08 3.6E-13 80.7 12.2 120 65-185 250-377 (379)
163 PRK10213 nepI ribonucleoside t 98.9 8.7E-08 1.9E-12 77.8 16.5 137 55-196 243-382 (394)
164 PRK15402 multidrug efflux syst 98.9 8E-08 1.7E-12 78.2 16.3 115 65-181 249-368 (406)
165 TIGR00901 2A0125 AmpG-related 98.9 1.1E-08 2.5E-13 81.6 10.7 96 65-160 242-349 (356)
166 PRK14995 methyl viologen resis 98.9 2.7E-08 5.8E-13 83.2 13.1 115 65-180 293-410 (495)
167 PRK11902 ampG muropeptide tran 98.9 9.7E-08 2.1E-12 77.7 16.0 133 65-202 243-387 (402)
168 PF05631 DUF791: Protein of un 98.9 1.2E-07 2.6E-12 74.6 15.7 149 55-207 60-219 (354)
169 PRK11646 multidrug resistance 98.9 4.2E-08 9.1E-13 79.8 13.5 116 65-181 241-357 (400)
170 COG2271 UhpC Sugar phosphate p 98.9 2E-08 4.3E-13 80.2 11.0 132 65-197 286-426 (448)
171 PRK10091 MFS transport protein 98.9 7.7E-08 1.7E-12 77.7 14.8 129 65-196 233-367 (382)
172 PRK06814 acylglycerophosphoeth 98.9 3.1E-08 6.6E-13 90.5 13.9 127 65-192 259-409 (1140)
173 PRK11102 bicyclomycin/multidru 98.9 1.1E-07 2.4E-12 76.4 15.4 116 65-181 228-347 (377)
174 PRK11195 lysophospholipid tran 98.9 9.8E-08 2.1E-12 77.5 15.0 127 65-193 239-370 (393)
175 COG0477 ProP Permeases of the 98.9 2E-07 4.3E-12 71.5 16.0 127 67-194 39-174 (338)
176 KOG2504|consensus 98.9 1.7E-08 3.7E-13 84.2 9.7 149 53-205 322-476 (509)
177 TIGR01272 gluP glucose/galacto 98.9 2.3E-07 4.9E-12 73.0 15.4 121 65-189 176-299 (310)
178 COG2814 AraJ Arabinose efflux 98.9 2E-07 4.4E-12 74.7 15.1 141 55-201 238-382 (394)
179 PF06813 Nodulin-like: Nodulin 98.9 1.8E-07 3.8E-12 71.0 14.0 125 51-181 24-156 (250)
180 COG3104 PTR2 Dipeptide/tripept 98.9 1.7E-08 3.6E-13 82.2 9.0 138 65-203 59-204 (498)
181 PF07690 MFS_1: Major Facilita 98.8 5.6E-08 1.2E-12 77.0 11.4 115 56-174 234-352 (352)
182 KOG0254|consensus 98.8 1.6E-07 3.5E-12 78.9 14.3 138 70-208 332-487 (513)
183 PRK09669 putative symporter Ya 98.8 9.3E-08 2E-12 78.8 12.2 138 57-198 38-197 (444)
184 TIGR00896 CynX cyanate transpo 98.8 1.3E-07 2.8E-12 75.5 12.6 124 53-181 221-346 (355)
185 KOG2816|consensus 98.8 1.7E-07 3.6E-12 77.3 12.4 129 75-207 70-202 (463)
186 PRK09848 glucuronide transport 98.8 1.1E-06 2.4E-11 72.6 17.2 106 74-180 271-385 (448)
187 PRK10133 L-fucose transporter; 98.8 4.9E-07 1.1E-11 74.5 15.1 125 65-193 293-421 (438)
188 KOG3762|consensus 98.7 9E-08 2E-12 78.6 9.0 130 67-196 406-538 (618)
189 PF13347 MFS_2: MFS/sugar tran 98.7 4.9E-07 1.1E-11 74.2 13.5 115 65-180 258-381 (428)
190 TIGR00788 fbt folate/biopterin 98.7 4.3E-07 9.4E-12 75.5 13.0 141 65-206 286-447 (468)
191 PRK10473 multidrug efflux syst 98.7 2.1E-06 4.6E-11 69.5 16.5 111 65-181 237-347 (392)
192 TIGR00924 yjdL_sub1_fam amino 98.7 1.6E-06 3.4E-11 72.3 16.0 127 69-196 314-459 (475)
193 PRK09669 putative symporter Ya 98.7 3.6E-06 7.7E-11 69.5 17.6 112 68-180 265-385 (444)
194 PRK10429 melibiose:sodium symp 98.7 7.1E-07 1.5E-11 74.3 13.0 141 65-206 40-203 (473)
195 COG2223 NarK Nitrate/nitrite t 98.6 1.7E-07 3.7E-12 74.8 8.7 140 55-199 245-395 (417)
196 PF00083 Sugar_tr: Sugar (and 98.6 9.4E-11 2E-15 96.5 -10.4 132 75-208 294-440 (451)
197 PRK15034 nitrate/nitrite trans 98.6 1.5E-06 3.3E-11 71.6 14.1 124 74-198 293-447 (462)
198 PF03825 Nuc_H_symport: Nucleo 98.6 1.5E-06 3.3E-11 70.7 14.0 98 50-150 23-121 (400)
199 PRK10429 melibiose:sodium symp 98.6 5.8E-06 1.3E-10 68.9 17.5 115 65-180 264-390 (473)
200 PRK11043 putative transporter; 98.6 5.1E-06 1.1E-10 67.4 16.3 123 54-181 228-355 (401)
201 TIGR00885 fucP L-fucose:H+ sym 98.6 3.5E-06 7.6E-11 68.9 15.0 109 70-182 272-380 (410)
202 TIGR00894 2A0114euk Na(+)-depe 98.6 2E-06 4.4E-11 71.3 13.6 136 65-202 295-447 (465)
203 KOG4686|consensus 98.6 1.5E-06 3.3E-11 66.5 11.2 121 55-181 291-412 (459)
204 KOG0255|consensus 98.6 6E-06 1.3E-10 69.5 16.2 135 73-208 356-496 (521)
205 PRK09584 tppB putative tripept 98.6 6.5E-06 1.4E-10 69.1 16.1 109 69-178 318-439 (500)
206 PF05978 UNC-93: Ion channel r 98.5 7.4E-06 1.6E-10 57.7 13.6 107 71-179 41-147 (156)
207 TIGR01301 GPH_sucrose GPH fami 98.5 1.2E-05 2.7E-10 66.7 16.5 137 71-208 309-475 (477)
208 KOG0252|consensus 98.5 3.6E-08 7.7E-13 79.5 0.9 127 78-208 359-501 (538)
209 PRK10207 dipeptide/tripeptide 98.4 1.6E-05 3.5E-10 66.5 15.5 111 69-180 311-438 (489)
210 PRK11652 emrD multidrug resist 98.4 2.8E-05 6.2E-10 63.0 15.9 115 65-181 241-358 (394)
211 TIGR00926 2A1704 Peptide:H+ sy 98.4 1.2E-05 2.6E-10 69.2 14.1 134 66-200 22-177 (654)
212 PF11700 ATG22: Vacuole efflux 98.4 5.2E-05 1.1E-09 63.2 17.4 143 65-208 68-251 (477)
213 PRK11462 putative transporter; 98.4 2E-05 4.4E-10 65.4 14.7 141 65-206 43-206 (460)
214 KOG2563|consensus 98.4 7.4E-06 1.6E-10 66.3 11.6 115 65-180 77-199 (480)
215 PF13347 MFS_2: MFS/sugar tran 98.4 7E-07 1.5E-11 73.3 6.0 141 65-206 35-200 (428)
216 PF03209 PUCC: PUCC protein; 98.3 7.1E-05 1.5E-09 60.2 16.1 138 58-199 238-392 (403)
217 TIGR01272 gluP glucose/galacto 98.3 9.5E-06 2.1E-10 63.9 11.0 80 116-196 6-104 (310)
218 KOG3764|consensus 98.3 3E-06 6.6E-11 67.5 7.5 131 65-196 304-445 (464)
219 PRK11462 putative transporter; 98.2 5.3E-05 1.2E-09 62.9 14.4 113 67-180 263-384 (460)
220 COG2807 CynX Cyanate permease 98.2 7.4E-05 1.6E-09 59.1 14.1 141 51-196 230-376 (395)
221 PRK09848 glucuronide transport 98.2 3.6E-05 7.9E-10 63.6 13.1 120 57-180 37-174 (448)
222 TIGR00886 2A0108 nitrite extru 98.2 4E-06 8.6E-11 67.0 7.2 95 65-160 259-357 (366)
223 COG2211 MelB Na+/melibiose sym 98.2 0.00015 3.3E-09 59.7 15.2 112 67-179 272-392 (467)
224 PF03209 PUCC: PUCC protein; 98.1 0.00024 5.1E-09 57.2 14.6 120 57-181 8-149 (403)
225 PF01770 Folate_carrier: Reduc 98.1 0.00045 9.8E-09 56.0 15.5 126 79-206 53-183 (412)
226 PF01306 LacY_symp: LacY proto 98.0 0.00011 2.5E-09 59.7 11.7 132 59-196 38-179 (412)
227 PF03137 OATP: Organic Anion T 98.0 9.7E-07 2.1E-11 74.4 -0.3 125 52-180 26-200 (539)
228 PF06779 DUF1228: Protein of u 98.0 2.1E-05 4.6E-10 49.2 5.5 75 46-123 9-83 (85)
229 KOG2532|consensus 98.0 7.8E-05 1.7E-09 61.9 10.0 128 65-199 292-441 (466)
230 COG2211 MelB Na+/melibiose sym 97.9 0.00025 5.3E-09 58.5 12.0 141 65-206 46-209 (467)
231 COG0738 FucP Fucose permease [ 97.8 0.00032 6.9E-09 56.3 10.7 113 65-181 270-382 (422)
232 PF06609 TRI12: Fungal trichot 97.7 0.0017 3.8E-08 55.3 14.6 108 68-176 350-460 (599)
233 PF03092 BT1: BT1 family; Int 97.7 0.00088 1.9E-08 55.3 12.3 146 55-205 16-176 (433)
234 PRK15462 dipeptide/tripeptide 97.7 0.0051 1.1E-07 51.6 16.1 113 68-180 309-437 (493)
235 KOG4686|consensus 97.6 4.8E-06 1E-10 63.8 -1.9 105 68-173 80-188 (459)
236 KOG2816|consensus 97.6 0.0062 1.4E-07 50.7 15.4 119 57-180 270-389 (463)
237 KOG3626|consensus 97.6 0.00015 3.2E-09 62.6 5.9 151 52-206 120-344 (735)
238 KOG2533|consensus 97.6 0.0012 2.6E-08 55.3 11.0 110 65-174 307-421 (495)
239 PF12832 MFS_1_like: MFS_1 lik 97.5 0.00031 6.6E-09 43.4 4.9 52 52-106 23-74 (77)
240 PRK15403 multidrug efflux syst 97.5 0.014 3.1E-07 47.8 16.0 124 65-190 252-382 (413)
241 KOG3098|consensus 97.4 0.0024 5.2E-08 52.8 11.0 103 73-177 56-158 (461)
242 PF00854 PTR2: POT family; In 97.4 0.0029 6.4E-08 51.1 11.2 104 98-202 2-120 (372)
243 KOG2615|consensus 97.4 0.0012 2.6E-08 52.8 8.4 123 57-183 290-414 (451)
244 COG2270 Permeases of the major 97.4 0.0046 1E-07 50.2 11.3 102 65-166 56-161 (438)
245 PTZ00207 hypothetical protein; 97.3 0.015 3.2E-07 49.9 14.2 125 72-199 396-546 (591)
246 TIGR00769 AAA ADP/ATP carrier 97.2 0.042 9.1E-07 45.9 16.2 113 67-180 43-188 (472)
247 PF03092 BT1: BT1 family; Int 97.2 0.0096 2.1E-07 49.2 12.0 141 65-206 253-414 (433)
248 KOG4332|consensus 97.1 0.0026 5.7E-08 48.8 6.8 87 55-145 63-149 (454)
249 PF02487 CLN3: CLN3 protein; 96.6 0.035 7.6E-07 45.2 10.4 110 67-181 281-395 (402)
250 KOG0637|consensus 96.5 0.0042 9.1E-08 50.9 4.4 107 74-181 74-203 (498)
251 PF06963 FPN1: Ferroportin1 (F 96.4 0.27 5.8E-06 40.7 14.6 114 65-179 291-414 (432)
252 COG3104 PTR2 Dipeptide/tripept 96.4 0.19 4E-06 42.0 13.4 111 67-178 324-451 (498)
253 PRK03612 spermidine synthase; 96.0 0.57 1.2E-05 39.9 14.8 114 65-180 48-168 (521)
254 PF02487 CLN3: CLN3 protein; 95.9 0.26 5.6E-06 40.3 11.7 120 69-194 61-184 (402)
255 KOG1330|consensus 95.7 0.027 5.8E-07 46.4 5.7 116 66-181 282-410 (493)
256 KOG3098|consensus 95.7 1 2.2E-05 37.6 15.9 101 69-171 281-402 (461)
257 KOG1237|consensus 95.6 0.16 3.5E-06 43.6 10.0 132 68-200 74-240 (571)
258 KOG3762|consensus 94.1 0.057 1.2E-06 45.5 3.4 63 52-117 34-97 (618)
259 KOG1479|consensus 93.4 0.55 1.2E-05 38.4 7.9 110 66-178 281-400 (406)
260 PF01770 Folate_carrier: Reduc 93.3 2.6 5.7E-05 34.7 11.6 96 65-160 283-380 (412)
261 KOG3810|consensus 93.0 0.36 7.8E-06 38.7 6.1 120 85-206 60-184 (433)
262 PF07672 MFS_Mycoplasma: Mycop 92.6 2.8 6E-05 32.3 10.1 101 68-172 142-254 (267)
263 KOG3880|consensus 91.1 1.7 3.7E-05 34.5 7.6 113 65-183 286-404 (409)
264 TIGR00939 2a57 Equilibrative N 90.1 6.4 0.00014 32.8 10.8 109 68-178 308-429 (437)
265 TIGR00806 rfc RFC reduced fola 89.6 5.1 0.00011 33.9 9.7 93 68-160 299-393 (511)
266 KOG2563|consensus 89.3 0.63 1.4E-05 38.5 4.3 93 67-160 301-399 (480)
267 PF03137 OATP: Organic Anion T 87.7 0.16 3.6E-06 43.3 0.0 124 55-181 332-512 (539)
268 PF03219 TLC: TLC ATP/ADP tran 87.3 17 0.00038 30.8 14.7 114 67-181 58-204 (491)
269 TIGR00939 2a57 Equilibrative N 86.7 17 0.00038 30.3 11.7 33 119-152 105-137 (437)
270 KOG3097|consensus 86.6 0.89 1.9E-05 36.2 3.5 74 75-149 66-139 (390)
271 KOG3574|consensus 86.4 8.4 0.00018 31.8 8.7 99 74-173 68-185 (510)
272 PF13000 Acatn: Acetyl-coenzym 85.2 19 0.0004 30.7 10.5 36 140-176 138-173 (544)
273 KOG4332|consensus 84.4 18 0.00039 28.5 9.6 93 68-160 283-384 (454)
274 KOG2325|consensus 84.0 1.1 2.4E-05 37.6 3.1 64 128-192 396-462 (488)
275 COG5336 Uncharacterized protei 83.4 5.7 0.00012 26.0 5.4 33 70-102 45-78 (116)
276 TIGR00805 oat sodium-independe 81.5 2 4.3E-05 37.6 3.8 53 58-113 360-415 (633)
277 KOG0637|consensus 80.7 4.3 9.4E-05 33.9 5.2 76 70-145 335-410 (498)
278 KOG3810|consensus 80.4 12 0.00026 30.4 7.4 93 68-160 272-366 (433)
279 TIGR00880 2_A_01_02 Multidrug 75.0 14 0.00031 24.0 6.0 39 69-107 89-127 (141)
280 PF06963 FPN1: Ferroportin1 (F 74.0 51 0.0011 27.6 15.4 42 70-111 41-82 (432)
281 PF01733 Nucleoside_tran: Nucl 73.2 1.5 3.2E-05 34.6 0.7 105 72-178 187-305 (309)
282 COG3202 ATP/ADP translocase [E 72.4 61 0.0013 27.6 15.5 127 54-181 48-208 (509)
283 PF02632 BioY: BioY family; I 70.8 33 0.00072 24.0 7.7 25 74-98 60-84 (148)
284 COG1268 BioY Uncharacterized c 69.6 25 0.00055 25.6 6.2 23 74-96 89-111 (184)
285 COG4769 Predicted membrane pro 68.9 24 0.00053 25.1 5.7 54 74-133 80-133 (181)
286 COG3389 Uncharacterized protei 67.5 19 0.00042 27.1 5.3 31 72-102 33-63 (277)
287 TIGR03802 Asp_Ala_antiprt aspa 64.2 92 0.002 27.1 9.6 38 69-108 452-489 (562)
288 KOG1479|consensus 60.0 1E+02 0.0022 25.7 11.8 31 120-150 117-147 (406)
289 TIGR01666 YCCS hypothetical me 57.5 1.5E+02 0.0032 26.8 10.9 53 85-137 41-98 (704)
290 TIGR00926 2A1704 Peptide:H+ sy 55.0 1.6E+02 0.0034 26.3 10.2 76 120-196 565-643 (654)
291 KOG3626|consensus 54.3 16 0.00034 32.6 3.4 55 126-180 592-646 (735)
292 TIGR01667 YCCS_YHJK integral m 52.9 1.7E+02 0.0038 26.3 10.6 53 85-137 41-98 (701)
293 KOG1237|consensus 51.4 85 0.0018 27.4 7.4 60 120-180 458-517 (571)
294 KOG3880|consensus 51.0 32 0.00068 27.7 4.3 124 75-204 70-199 (409)
295 PRK14230 camphor resistance pr 50.7 74 0.0016 21.3 9.1 15 136-150 69-83 (119)
296 COG2119 Predicted membrane pro 49.2 41 0.00089 24.5 4.3 36 76-111 143-178 (190)
297 PF09527 ATPase_gene1: Putativ 47.8 49 0.0011 18.5 6.6 36 74-109 7-43 (55)
298 PF04281 Tom22: Mitochondrial 45.7 99 0.0021 21.3 5.8 17 144-160 59-75 (137)
299 TIGR00986 3a0801s05tom22 mitoc 45.5 90 0.002 21.7 5.3 18 143-160 56-73 (145)
300 PRK03818 putative transporter; 44.2 2.2E+02 0.0047 24.8 9.8 79 69-148 437-516 (552)
301 PF12805 FUSC-like: FUSC-like 43.5 1.6E+02 0.0034 23.0 9.8 14 120-133 23-36 (284)
302 PF10183 ESSS: ESSS subunit of 42.0 48 0.001 21.6 3.6 27 182-208 58-85 (105)
303 PF11947 DUF3464: Protein of u 39.9 1.3E+02 0.0029 21.2 5.9 32 138-170 112-143 (153)
304 PRK04972 putative transporter; 39.8 2.6E+02 0.0056 24.4 9.9 87 69-157 447-534 (558)
305 PF11299 DUF3100: Protein of u 39.5 1.6E+02 0.0035 22.4 6.3 96 52-173 127-222 (241)
306 PF13000 Acatn: Acetyl-coenzym 38.2 2.7E+02 0.0058 24.2 11.4 49 127-176 412-460 (544)
307 PF05297 Herpes_LMP1: Herpesvi 38.0 11 0.00023 29.4 0.0 13 195-207 176-188 (381)
308 KOG3097|consensus 36.4 1.6E+02 0.0034 24.0 6.1 44 67-110 310-353 (390)
309 TIGR02230 ATPase_gene1 F0F1-AT 35.2 1.3E+02 0.0028 19.6 6.3 32 76-107 51-83 (100)
310 PF06645 SPC12: Microsomal sig 34.9 1.1E+02 0.0023 18.7 5.8 32 163-194 14-45 (76)
311 COG5336 Uncharacterized protei 34.8 1.4E+02 0.0029 19.8 6.0 31 151-181 37-67 (116)
312 PF02694 UPF0060: Uncharacteri 32.1 1.5E+02 0.0033 19.5 4.6 49 67-115 54-102 (107)
313 PRK10692 hypothetical protein; 31.1 1.4E+02 0.003 18.8 4.9 18 96-113 3-20 (92)
314 PF07274 DUF1440: Protein of u 30.3 1.5E+02 0.0032 20.5 4.5 31 128-158 56-86 (135)
315 PRK14229 camphor resistance pr 30.0 1.6E+02 0.0035 19.2 8.4 15 136-150 65-79 (108)
316 PRK12887 ubiA tocopherol phyty 29.3 2.9E+02 0.0063 21.9 8.1 21 93-113 221-241 (308)
317 PRK14214 camphor resistance pr 28.0 1.9E+02 0.0041 19.3 9.4 48 103-150 38-85 (118)
318 PF13829 DUF4191: Domain of un 27.0 2.5E+02 0.0054 21.3 5.5 19 178-196 46-64 (224)
319 PLN02878 homogentisate phytylt 26.6 3.2E+02 0.0069 21.5 8.7 21 92-112 194-214 (280)
320 PF11298 DUF3099: Protein of u 26.6 1E+02 0.0023 18.6 2.9 30 90-119 10-39 (73)
321 PF10762 DUF2583: Protein of u 26.4 1.7E+02 0.0037 18.3 4.5 17 96-112 3-19 (89)
322 PRK14220 camphor resistance pr 26.3 2.1E+02 0.0045 19.2 8.1 13 137-149 72-84 (120)
323 PF13493 DUF4118: Domain of un 26.1 83 0.0018 20.0 2.8 24 74-97 82-105 (105)
324 PF10785 NADH-u_ox-rdase: NADH 26.0 1.7E+02 0.0038 18.3 5.4 40 79-118 30-76 (86)
325 PRK02237 hypothetical protein; 25.3 2.1E+02 0.0045 18.9 4.8 47 68-114 57-103 (109)
326 PRK14199 camphor resistance pr 25.0 2.3E+02 0.0049 19.2 9.7 20 129-150 73-92 (128)
327 PF06826 Asp-Al_Ex: Predicted 24.0 2.8E+02 0.006 19.9 10.4 76 68-148 57-136 (169)
328 PRK14200 camphor resistance pr 23.9 2.4E+02 0.0052 19.1 9.8 16 135-150 77-92 (127)
329 PRK14212 camphor resistance pr 23.4 2.4E+02 0.0053 19.1 9.6 15 136-150 75-89 (128)
330 PF06912 DUF1275: Protein of u 23.2 3E+02 0.0066 20.1 17.0 39 74-112 53-94 (209)
331 PRK14228 camphor resistance pr 23.1 2.4E+02 0.0053 18.9 9.9 15 136-150 73-87 (122)
332 PRK14232 camphor resistance pr 23.0 2.4E+02 0.0052 18.8 9.4 20 129-150 64-83 (120)
333 KOG2601|consensus 21.7 4.9E+02 0.011 21.9 7.8 41 73-113 69-109 (503)
334 COG1811 Uncharacterized membra 21.7 3E+02 0.0065 20.8 5.0 50 78-127 14-63 (228)
335 PF15061 DUF4538: Domain of un 21.4 1E+02 0.0022 17.8 2.0 21 181-201 3-23 (58)
336 PF04474 DUF554: Protein of un 20.9 3.5E+02 0.0076 20.5 5.4 49 77-125 12-60 (226)
337 PF11151 DUF2929: Protein of u 20.7 1.8E+02 0.004 16.6 6.1 41 167-207 12-55 (57)
338 TIGR01625 YidE_YbjL_dupl AspT/ 20.7 3.1E+02 0.0068 19.3 7.0 32 68-99 57-88 (154)
339 COG5547 Small integral membran 20.7 1.9E+02 0.004 16.7 4.6 20 97-116 8-27 (62)
No 1
>TIGR00898 2A0119 cation transport protein.
Probab=99.89 E-value=8.2e-22 Score=164.15 Aligned_cols=158 Identities=28% Similarity=0.577 Sum_probs=145.6
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
...+++.+++++.|++..+.++..+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34578899999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
.|++.+...+....++.|++|+++|+.+.++ ...++.+|.+++|.++..+.+||+.+++.+++.++..+..+++||+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp 267 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL-IQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESP 267 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999988 67788999999999998888999999998888777666667889986
No 2
>KOG0255|consensus
Probab=99.87 E-value=1.9e-21 Score=162.72 Aligned_cols=156 Identities=31% Similarity=0.448 Sum_probs=140.6
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
..++..++++.|++.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++|++.+.+.|++.|
T Consensus 103 ~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 103 VYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSG 182 (521)
T ss_pred cccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44566668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
++.+......+.++.|+.++++|+.+..+ ....+..|.+..+..+.+..+||+.+++..++.++.++.+++.||+|
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 99999999999999999999999999988 67677666666666666666999999999999888777777778987
No 3
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.87 E-value=1.3e-20 Score=161.60 Aligned_cols=152 Identities=20% Similarity=0.349 Sum_probs=133.3
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGV 132 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 132 (208)
+.+..++++ +....+++.+++.++.+++++++|+++||+|||+++++++++.+++.++.+++++++.++++|++.|+
T Consensus 191 p~i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~ 267 (742)
T TIGR01299 191 PSAEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGF 267 (742)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444455665 56778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----------------hhhHHHHHHHHHHHHH
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----------------ADWQWISVITIFPLIV 196 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~~w~~~~~~~~~~~~~ 196 (208)
+.+...+...+++.|++|++.|++.+++ +..++.+|.++++.++..+ .+||+++++.+++.++
T Consensus 268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~-~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll 346 (742)
T TIGR01299 268 GIGGAIPIVFSYFAEFLAQEKRGEHLSW-LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF 346 (742)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 6778888888887765432 1689999888888888
Q ss_pred HHHHHhccCCCC
Q psy2964 197 GLIVAIFTPESA 208 (208)
Q Consensus 197 ~~~~~~~~petp 208 (208)
.++..+++||||
T Consensus 347 ~ll~~~~lPESP 358 (742)
T TIGR01299 347 AIGALTFMPESP 358 (742)
T ss_pred HHHHHHHcCCCH
Confidence 878888899997
No 4
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.87 E-value=9.8e-21 Score=154.09 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=136.0
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+++.+++.+++++.|+++||+|||+++..+.++..++..+.+++++++.+++.|++.|
T Consensus 31 ~~~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 107 (412)
T TIGR02332 31 GLTMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVG 107 (412)
T ss_pred HHhhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456678887 6788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVA 201 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~ 201 (208)
++.+...+....++.|++|+++|++++++ ++.+..+|..+++.+++++. +||+.|++.+++.++ ..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPAYFRARANAL-FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 99999989999999999999999999999 77788899999998887652 899999998777665 44556
Q ss_pred hccCCCC
Q psy2964 202 IFTPESA 208 (208)
Q Consensus 202 ~~~petp 208 (208)
+++||+|
T Consensus 187 ~~~~~~p 193 (412)
T TIGR02332 187 FWLDDSP 193 (412)
T ss_pred hccCCCc
Confidence 6788876
No 5
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.85 E-value=8.1e-20 Score=146.55 Aligned_cols=154 Identities=8% Similarity=-0.048 Sum_probs=125.0
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
...+.+.+++++ +..+.++..+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|++
T Consensus 12 ~~lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 88 (368)
T TIGR00903 12 PVLSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL 88 (368)
T ss_pred hhHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 335667778887 67788999999999999999999999999999998776655554443323333789999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccC
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTP 205 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~p 205 (208)
+|++.+.. ......++|++|+++|++++++ ...+..+|..+++.++..+. +||+.|++.+++.++ .++.++.+|
T Consensus 89 ~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~-~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 89 AALGQPFL-LNAFAPAASQIREERRDLVISL-LSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHhHhHHH-HHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998864 5666777999999999999999 67789999999998888875 999999987776655 555666789
Q ss_pred CCC
Q psy2964 206 ESA 208 (208)
Q Consensus 206 etp 208 (208)
|+|
T Consensus 167 ~~p 169 (368)
T TIGR00903 167 ALP 169 (368)
T ss_pred CCC
Confidence 876
No 6
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.84 E-value=2.5e-19 Score=148.21 Aligned_cols=143 Identities=18% Similarity=0.369 Sum_probs=123.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh------------ccHHHHHHHHHHHhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS------------KDVVLFSLSRFLTGV 132 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~ 132 (208)
+..+.++..+++.++..++++++|+++||+|||+++..+.++..++.+..++. +.++.+++.|+++|+
T Consensus 53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~ 132 (479)
T PRK10077 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132 (479)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence 56678999999999999999999999999999999999999988887766652 224667899999999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHH
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~ 201 (208)
+.+...+...++++|++|+++|++++++ .+.+..+|..+++.++..+ .+||+.|++.+++.++..+..
T Consensus 133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 133 GVGLASMLSPMYIAEIAPAHIRGKLVSF-NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hHhHHhhHHHHHHHhhCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 7778888888887776543 179999998877777766667
Q ss_pred hccCCCC
Q psy2964 202 IFTPESA 208 (208)
Q Consensus 202 ~~~petp 208 (208)
+++||+|
T Consensus 212 ~~l~~s~ 218 (479)
T PRK10077 212 YFVPETP 218 (479)
T ss_pred HcCCCCc
Confidence 7789986
No 7
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.83 E-value=2.6e-19 Score=145.84 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=133.5
Q ss_pred hhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q psy2964 49 DRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRF 128 (208)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (208)
.+.++.+.++++. +....++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+++..+++++.++++|+
T Consensus 36 ~p~l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~ 112 (413)
T PRK15403 36 QPGIINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARF 112 (413)
T ss_pred ccCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3335566677775 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhcc
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFT 204 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~ 204 (208)
++|++.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+. +||+.|++.++..++..+ .++.+
T Consensus 113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l 191 (413)
T PRK15403 113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAI-ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM 191 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999887777778889999999999999998 67778889999999888765 899999988877666544 35567
Q ss_pred CCCC
Q psy2964 205 PESA 208 (208)
Q Consensus 205 petp 208 (208)
||++
T Consensus 192 p~~~ 195 (413)
T PRK15403 192 PETV 195 (413)
T ss_pred CCCc
Confidence 8863
No 8
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.83 E-value=3.1e-19 Score=148.78 Aligned_cols=142 Identities=22% Similarity=0.330 Sum_probs=124.7
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhhhhhHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~ 139 (208)
+.+.+++.+.+.++..++++++|+++||+|||+++.++.++..++.++++++++ ++.++++|++.|++.+...+
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 345678999999999999999999999999999999999999999888887755 67899999999999999999
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh--------------------------hhhHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL--------------------------ADWQWISVITIFP 193 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~w~~~~~~~~~~ 193 (208)
....+++|.+|+++|++++++ ......+|..+++.++..+ .+||+++.+.+++
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAA-VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 999999999999999999998 6678888888887766432 1699999888888
Q ss_pred HHHHHHHHhccCCCC
Q psy2964 194 LIVGLIVAIFTPESA 208 (208)
Q Consensus 194 ~~~~~~~~~~~petp 208 (208)
.++..+..+++||||
T Consensus 214 ~~i~~~~~~~lpESp 228 (502)
T TIGR00887 214 ALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHhCCCCH
Confidence 888777788899997
No 9
>PRK03545 putative arabinose transporter; Provisional
Probab=99.83 E-value=3.4e-19 Score=143.96 Aligned_cols=152 Identities=10% Similarity=0.075 Sum_probs=133.8
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+.+.+++.+++++.|+++||+|||+++..+.++.++++++++++++++.+++.|+++|
T Consensus 32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 108 (390)
T PRK03545 32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA 108 (390)
T ss_pred hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567778887 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pet 207 (208)
++.+...+...+++.|++|+++|++++++ +..+..+|..++|.+++.+. +||+.|++.+++.++.. .....+||.
T Consensus 109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 109 FAHAIFWSITASLAIRVAPAGKKAQALSL-LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhhhHHHH-HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99988888999999999999999999999 78888999999999888764 89999999877766543 334456654
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.83 E-value=4.2e-19 Score=147.53 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=115.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHH--------HHHHHHHHhhhhhhHHHHHHHH
Q psy2964 73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVL--------FSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
.++..++..++++++|+++||+|||+++.++.++.+++.+++++++++.. ++++|+++|++.|...+....+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 46777899999999999999999999999999999999999999999864 7899999999999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
++|++|+++|++..++ ...+..+|..+++.+...+ .+||+.|++.+++.++.+++...+||+|
T Consensus 143 ~~e~~p~~~Rg~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp 216 (490)
T PRK10642 143 VAEYSPDRKRGFMGSW-LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP 216 (490)
T ss_pred HHHhCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 9999999999999888 5666667777666444322 2899999997766666666667789986
No 11
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4.5e-19 Score=140.60 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=140.6
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
..++.+.++++. +....++..++|.++..+++++...+.||+.||++++..+.++.+++++.++++|++.++++|++
T Consensus 34 gLLp~iA~dl~v---s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~ 110 (394)
T COG2814 34 GLLPPIAADLGV---SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110 (394)
T ss_pred hchHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 346788888987 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTP 205 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~p 205 (208)
.|+..|..++...++..++.|+++|++++++ ...+..++.++|..++.++. |||+.|++.+...++.+ ..+..+|
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiai-v~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALAL-VFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHH-HHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 66699999999999999887 99999999888887744 4667788
No 12
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.83 E-value=4.3e-19 Score=147.64 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=133.1
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
..+++.++++. +..+.+|..+.|.++...+.++.|+++||+|||+++..+.++..+++++++.+++++.++++|+++
T Consensus 28 a~p~i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~ 104 (495)
T PRK14995 28 AAPTLSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALL 104 (495)
T ss_pred HHHHHHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777875 667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccC
Q psy2964 131 GVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTP 205 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~p 205 (208)
|++.+...+.....+.+.+ |+++|++++++ +.....+|..++|.+++++. +|||.|++...+.++. .+..+++|
T Consensus 105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~-~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 105 AIGAAMIVPATLAGIRATFTEEKQRNMALGV-WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999988888888787765 78999999999 77789999999999999885 8999999876655553 34455567
Q ss_pred CCC
Q psy2964 206 ESA 208 (208)
Q Consensus 206 etp 208 (208)
|.|
T Consensus 184 ~~~ 186 (495)
T PRK14995 184 RQA 186 (495)
T ss_pred CCC
Confidence 653
No 13
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.82 E-value=1.2e-18 Score=141.09 Aligned_cols=153 Identities=10% Similarity=0.103 Sum_probs=133.0
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++..+.++++.+++.|+++|
T Consensus 43 l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 119 (394)
T PRK10213 43 LTPMAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG 119 (394)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 4556677776 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet 207 (208)
++.+...+....++.|++|+++|++++++ ......+|..++|.+++.+. +||+.|++.+++.++..+ .....||+
T Consensus 120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 120 LALGGFWAMSASLTMRLVPPRTVPKALSV-IFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HhhHHHHHHHHHHHHHHcCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999 66688899999999998875 899999887766555433 33456775
Q ss_pred C
Q psy2964 208 A 208 (208)
Q Consensus 208 p 208 (208)
|
T Consensus 199 ~ 199 (394)
T PRK10213 199 P 199 (394)
T ss_pred C
Confidence 3
No 14
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.81 E-value=1.3e-18 Score=140.49 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=133.7
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+++.++..++.++.|+++||+|||++++.+.++.+++.++.++.++++.+++.|++.|
T Consensus 35 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 111 (405)
T TIGR00891 35 LAEVAGEFGL---TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIG 111 (405)
T ss_pred HHHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3556677776 6778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h--hHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D--WQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
++.+...+....++.|.+|+++|+++.++ ...+..+|..+++.+++.+. + ||+.+++.+++.++.++.....||
T Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 190 (405)
T TIGR00891 112 IGMGGEYGSSAAYVIESWPKHLRNKASGL-LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPE 190 (405)
T ss_pred hhhhhhhHHHHHHHHHhCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 67788899999988877664 3 999998877666666666666787
Q ss_pred CC
Q psy2964 207 SA 208 (208)
Q Consensus 207 tp 208 (208)
+|
T Consensus 191 ~~ 192 (405)
T TIGR00891 191 AE 192 (405)
T ss_pred Ch
Confidence 63
No 15
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.80 E-value=2.1e-18 Score=141.29 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=111.2
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV--------LFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
.+...++..++++++|+++||+|||+++..+.++..++.+++++.+++. .++++|+++|++.|...+...++
T Consensus 69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~ 148 (432)
T PRK10406 69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATY 148 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Confidence 3455566669999999999999999999999999999999998887763 58889999999999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
+.|++|+++|++..++ ...+...|..+++.+...+ .+||++|++.+++.++..+....+||+|
T Consensus 149 i~e~~p~~~rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 149 MSEVAVEGRKGFYASF-QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred HHHhCCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999887 5556666666666543322 2899999988887777666666678875
No 16
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.80 E-value=2.6e-18 Score=138.53 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=132.1
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
..+.+.+++++ +..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.
T Consensus 25 ~l~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~ 101 (382)
T PRK10091 25 VLTELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVS 101 (382)
T ss_pred ChHHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34556677776 667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPE 206 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe 206 (208)
|++.+...+....++.|++|+++|+++++. ...+..+|..++|.+++.+. +||+.|++.++..++.. ...+++||
T Consensus 102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~ 180 (382)
T PRK10091 102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAG-MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD 180 (382)
T ss_pred HhhhHHHHHHHHHHHHHhCChHHhhHHHHH-HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998888888999999999999999998 66688889999888887764 89999998877665533 34556777
Q ss_pred C
Q psy2964 207 S 207 (208)
Q Consensus 207 t 207 (208)
.
T Consensus 181 ~ 181 (382)
T PRK10091 181 I 181 (382)
T ss_pred C
Confidence 4
No 17
>KOG0569|consensus
Probab=99.80 E-value=4e-18 Score=138.87 Aligned_cols=165 Identities=23% Similarity=0.290 Sum_probs=134.6
Q ss_pred HhhhhcchhhhhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-
Q psy2964 39 EEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS- 117 (208)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~- 117 (208)
..+++.+..+..++..-.++-.+ +...+.+++++.+|.++|++..++++||+|||..+.++.++..++..++.++
T Consensus 36 ~i~~f~n~t~~~r~g~~~s~~~~----~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~ 111 (485)
T KOG0569|consen 36 LIKSFINETLIERYGLPLSDSTL----DLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK 111 (485)
T ss_pred HHHHHHHHHHHHhcCCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554433333322 3457888999999999999999999999999999999999998888877765
Q ss_pred --ccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh--h---hhhHHHHHHH
Q psy2964 118 --KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY--L---ADWQWISVIT 190 (208)
Q Consensus 118 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~--~---~~w~~~~~~~ 190 (208)
+++..++++|++.|+..+......+.|+.|..|.+.||..-.+ .+++..+|..++..++.- + ..|++.+.+.
T Consensus 112 ~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~-~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 112 SAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTL-LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHH-HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 6889999999999999999999999999999999999988666 777888888777554432 2 2699999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy2964 191 IFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 191 ~~~~~~~~~~~~~~petp 208 (208)
.+++++.++.+.++||||
T Consensus 191 ~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 191 LIPALLQLALLPFLPESP 208 (485)
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 999999999999999998
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.80 E-value=2e-18 Score=141.40 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=132.3
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.++.++.++++.+.+.|++.|
T Consensus 46 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 122 (434)
T PRK11663 46 MPEMLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNA 122 (434)
T ss_pred hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566677776 6678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
++.+...+....++.|++|+++|++++++ ++.+..+|..++|.+.+.+. +||+.|++.+++.++ .++..+++||+
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAI-WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99988888999999999999999999999 67788899999988877764 899999887766554 34444556665
Q ss_pred C
Q psy2964 208 A 208 (208)
Q Consensus 208 p 208 (208)
|
T Consensus 202 p 202 (434)
T PRK11663 202 P 202 (434)
T ss_pred H
Confidence 3
No 19
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.80 E-value=3.3e-18 Score=139.59 Aligned_cols=152 Identities=19% Similarity=0.352 Sum_probs=129.5
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ ++.+.++..+++.++..+++++.|+++||+|||+++..+.+..+++.++.+++++++.++++|++.|
T Consensus 41 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 117 (426)
T PRK12307 41 MYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVG 117 (426)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455667776 6678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
++.+...+....++.|.+|+++|+++.++ ...+..+|..+++.+...+. +||+.+++..++.++........||+
T Consensus 118 ~g~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~ 195 (426)
T PRK12307 118 MGMAGEYACASTYAVESWPKHLKSKASAF-LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPES 195 (426)
T ss_pred HHHhhHHHHHHHHHHHhCCHhHhhHhhhH-HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999 67788899999887776654 89999987655444444333345664
No 20
>KOG0254|consensus
Probab=99.79 E-value=3.2e-18 Score=143.02 Aligned_cols=140 Identities=22% Similarity=0.370 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLE 147 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 147 (208)
+.+++.+.+.++..+++++.|+++|++|||+.++++.+...++.++.++++++..+.++|++.|+|.|......+.|++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 148 CVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 148 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
..|++.|+...+. .+....+|..++..++.... +||.++.+..+++++..+..+++||||
T Consensus 170 iap~~~RG~l~~~-~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 170 IAPAHIRGTLVSL-YQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred cCChhhhHHHHHH-HHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999988 78888889888877766664 699999999999888776788899998
No 21
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.79 E-value=3e-18 Score=137.36 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=131.6
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGV 132 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 132 (208)
+.+.+++++ +..+.++..+++.++..++.++.|+++||+|||+++..+.++..++..+.++.++++.+.+.|++.|+
T Consensus 18 ~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 94 (399)
T TIGR00893 18 PMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA 94 (399)
T ss_pred HHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 445566776 67788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccCCC
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTPES 207 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pet 207 (208)
+.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+. +|++.|++.+++.++. ++..+..||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 95 AEAPFFPGIILIVASWFPASERATAVSI-FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP 172 (399)
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence 9999999999999999999999999999 77788899999998888654 8999999887766653 3344455554
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.79 E-value=6.1e-18 Score=137.19 Aligned_cols=153 Identities=23% Similarity=0.212 Sum_probs=131.7
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.++..+.++++.+++.|++.|
T Consensus 38 ~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 114 (406)
T PRK11551 38 APRMAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTG 114 (406)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556677776 6778999999999999999999999999999999999999999998888888999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
++.+...+....++.|.+|+++|++++++ ...+..+|..+++.++..+. +|++.+++.+++.++ ..+..+++||+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 115 VGLGGALPNLIALTSEAVGPRLRGTAVSL-MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred hhHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999 67788899999988876654 799998887665554 33445567876
Q ss_pred C
Q psy2964 208 A 208 (208)
Q Consensus 208 p 208 (208)
|
T Consensus 194 ~ 194 (406)
T PRK11551 194 R 194 (406)
T ss_pred h
Confidence 4
No 23
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.78 E-value=3.3e-18 Score=141.65 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=132.2
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.++++. +..+.++..+.+.++..++.++.|+++||+|||+.++.+.++..++..+++..++++.+++.|+++|
T Consensus 25 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 101 (485)
T TIGR00711 25 IPTIAGDLGS---SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG 101 (485)
T ss_pred HHHHHHhcCC---ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 4556666775 5677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pet 207 (208)
++.+...+....++.|.+|+++|++++++ +.....+|..++|.+++++. +||+.|++.+.+.++.. +..++.||+
T Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAI-WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hhhhhHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999 77788899999999988875 89999988766655533 344455553
No 24
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.78 E-value=9.8e-18 Score=132.87 Aligned_cols=148 Identities=22% Similarity=0.377 Sum_probs=127.9
Q ss_pred ceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964 54 RRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 133 (208)
.+.++++. +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++..+..++++.+.+++.|++.|++
T Consensus 22 ~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 98 (352)
T PF07690_consen 22 YLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIG 98 (352)
T ss_dssp HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccc
Confidence 45566676 677899999999999999999999999999999999999999999966666668888999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH-HhccC
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV-AIFTP 205 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~p 205 (208)
.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+. +||+.+++.++..++..++ ..+.+
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 99 SGFFSPASNALIADWFPPEERGRAFGI-LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHHHHCCCTCCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred cccccccccccccccchhhhhhhcccc-ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence 999999999999999999999999999 78899999999999999886 8999999988877775443 34444
No 25
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.78 E-value=1e-17 Score=134.59 Aligned_cols=152 Identities=16% Similarity=0.228 Sum_probs=132.0
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.++++. +..+.++..+++.++..+++++.|+++||+|||+.+..+.++..++.++....++++.+.+.|++.|
T Consensus 28 ~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 104 (385)
T TIGR00710 28 FPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQA 104 (385)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4556667776 6778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
++.+...+....++.|.+|+++|++++++ .+....+|..++|.+++.+. +|++.+++.++..++ ..+.++..||+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (385)
T TIGR00710 105 FGASAGSVISQALVRDIYPGEELSRIYSI-LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPET 183 (385)
T ss_pred cchhHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999 67788889999998888765 899998887766555 33444556765
No 26
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.78 E-value=7.2e-18 Score=138.53 Aligned_cols=142 Identities=22% Similarity=0.345 Sum_probs=124.3
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
..+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++.... .+++.+++.|++.|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 5788999999999999999999999999999999999999999988887554 3455889999999999999999999
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHH---Hhhh---hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA---YYLA---DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~---~~~~---~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
.++.|++|+++|++++++ +..+..+|..+++.++ .... +||+.|++.++..++..+..+++||+|
T Consensus 150 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSL-YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred HHHHccCChhhhhhhhhH-HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999 7778899999999988 5432 899999997666666666677788875
No 27
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.78 E-value=1.5e-17 Score=133.60 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=132.9
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
+..+.+.+++++ +..+.++..+++.++..++.+++|+++||+|||+.+..+.++.+++..++...++++.+.+.|++
T Consensus 12 p~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 88 (377)
T PRK11102 12 PALPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL 88 (377)
T ss_pred ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344566667776 67788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccC
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTP 205 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~p 205 (208)
.|++.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+. +|++.+++.+++.++. .+..+.+|
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSF-VTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999989999999999999999999999 66788889999998887764 8999998877766554 44455667
Q ss_pred CC
Q psy2964 206 ES 207 (208)
Q Consensus 206 et 207 (208)
|+
T Consensus 168 ~~ 169 (377)
T PRK11102 168 ET 169 (377)
T ss_pred cc
Confidence 64
No 28
>PRK09952 shikimate transporter; Provisional
Probab=99.77 E-value=2e-17 Score=135.69 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=111.6
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV--------LFSLSRFLTGVGHFNAFIFYYIIVL 146 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~ 146 (208)
+..++..+++++.|+++||+|||+++..+.++.+++++++++++++. .++++|+++|++.+...+....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999876 4888999999999999999999999
Q ss_pred hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
|++|+++|++..+. ...++.+|..+++.+...+ .+||++|++.+++.++........||+|
T Consensus 152 e~~p~~~rg~~~~~-~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~ 223 (438)
T PRK09952 152 ESAPKNKKAFYSSG-VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA 223 (438)
T ss_pred HhCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999998887 6777788887776554432 2899999988777665555555678875
No 29
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.77 E-value=1.6e-17 Score=134.49 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=121.8
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
...+.+.+++++ +..+.++..+++.+++.+++++.|+++||+|||+++..+..+.+++...++++++++.+++.|++
T Consensus 30 ~~lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l 106 (393)
T PRK09705 30 PLLPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL 106 (393)
T ss_pred hhHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 335677788887 77889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV 196 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~ 196 (208)
+|++.+...+....++.+.+| ++|+++++. +..+...|..+++.++..+. +||+.+.+.++..++
T Consensus 107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGL-WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHhHHHHHhhhhhHHHHHHcc-ccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999997 779999998 66666677777776666543 799877665554443
No 30
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.77 E-value=2.9e-17 Score=132.78 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=130.1
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
..+.+.++++. +..+.++..+++.++..+++++.|+++||+|||+.+..+.++..++..+....++++.+.+.|++.
T Consensus 25 ~lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 101 (392)
T PRK10473 25 GLPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ 101 (392)
T ss_pred hHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34556667776 567788999999999999999999999999999999999999999999888889999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE 206 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe 206 (208)
|++.+...+....++.|.+|+++|++++++ ......++..++|.+++.+. +|++.+++.++..++ ..+..+.+||
T Consensus 102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSL-LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred HhhhhHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999998888999999999999999999999 56677788888998887764 899998887766655 3344455666
Q ss_pred C
Q psy2964 207 S 207 (208)
Q Consensus 207 t 207 (208)
+
T Consensus 181 ~ 181 (392)
T PRK10473 181 T 181 (392)
T ss_pred C
Confidence 5
No 31
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.76 E-value=4.9e-17 Score=132.04 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=130.0
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
..++.+.+++++ +..+.++..+.+.++..++.++.|+++||+|||+++..+.....++.++....++++.+++.|++
T Consensus 34 ~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 110 (406)
T PRK15402 34 PGMLAVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL 110 (406)
T ss_pred cchHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 334556677776 66788899999999999999999999999999999999999999999888889999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccC
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTP 205 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~p 205 (208)
.|++.+...+....++.|.+|+++|.+.+++ ......++..++|.+++.+. +|++.+++.++..++..+ .++..|
T Consensus 111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK15402 111 QGIGLCFIGAVGYAAIQESFEEADAIKITAL-MANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMP 189 (406)
T ss_pred HHhHhhhHHHHHHHHHHHHhChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999988888889999999999999998888 45566678888888877764 899999887776665443 445567
Q ss_pred CCC
Q psy2964 206 ESA 208 (208)
Q Consensus 206 etp 208 (208)
|++
T Consensus 190 ~~~ 192 (406)
T PRK15402 190 ETA 192 (406)
T ss_pred CCC
Confidence 753
No 32
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.76 E-value=3.2e-17 Score=130.41 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=119.8
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-----DVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+..+.++..+++.++..+++++.|+++||+|||+++..+.++..++.++....+ +++.+++.|++.|++.+...+
T Consensus 32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 111 (365)
T TIGR00900 32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP 111 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999998888888777776 899999999999999999999
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
...+++.|++|+++|++++++ .+....+|..++|.+++.+. +|++.+++.++..++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 173 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSL-SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL 173 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 77888999999999988875 899998887766555443
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.76 E-value=1.2e-17 Score=137.97 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=124.2
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-----hccHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-----SKDVVLFSLS 126 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 126 (208)
.+.+.+++++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++..++.+. +++++.+++.
T Consensus 52 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (467)
T PRK09556 52 QNDMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL 128 (467)
T ss_pred hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5667778887 6788999999999999999999999999999999998888877777665554 5899999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHH-HHH
Q psy2964 127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA------DWQWISVITIFPLIV-GLI 199 (208)
Q Consensus 127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~-~~~ 199 (208)
|++.|++.+...+....+++|++|+++|++++|+ +..+..+|..+++.+..++. +|+..|.+.+++.++ +++
T Consensus 129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi-~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGF-WNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFI 207 (467)
T ss_pred HHHHHHHHhccchHHHHHHHHHcCccceeeeEEe-eecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHH
Confidence 9999999998889999999999999999999999 67778888888877765432 588878776666554 344
Q ss_pred HHhccCCC
Q psy2964 200 VAIFTPES 207 (208)
Q Consensus 200 ~~~~~pet 207 (208)
.+++.++.
T Consensus 208 ~~~~~~~~ 215 (467)
T PRK09556 208 GLRYGSDS 215 (467)
T ss_pred HHHhCCCC
Confidence 44444443
No 34
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.76 E-value=3e-18 Score=135.21 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=143.2
Q ss_pred hhhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964 48 LDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSR 127 (208)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (208)
+....+.+.++.++ +..+.+++.+.+.+.+.++.++.|.++||.++|..+..++++.++..++++++++.+.+.++.
T Consensus 48 F~~a~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~ 124 (448)
T COG2271 48 FNLAMPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLW 124 (448)
T ss_pred HhhccHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33336778888877 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHH--Hhhh---hhHHHHHHHHHHHHH-HHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA--YYLA---DWQWISVITIFPLIV-GLIVA 201 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~--~~~~---~w~~~~~~~~~~~~~-~~~~~ 201 (208)
++.|...|+..|.+...++.++|+++||+..++ ++.+.++|+.+.|.+. +++. +||..|++.++++++ +++.+
T Consensus 125 ~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si-Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~ 203 (448)
T COG2271 125 VLNGWFQGMGWPPCARTITHWFSRKERGTWWSI-WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL 203 (448)
T ss_pred HHHHHHhcCCCcHHHHHHHHHcCccccCceEEE-ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8999999999988888 5555 899999999888766 77777
Q ss_pred hccCCCC
Q psy2964 202 IFTPESA 208 (208)
Q Consensus 202 ~~~petp 208 (208)
+.++|+|
T Consensus 204 ~~~rd~P 210 (448)
T COG2271 204 FLLRDRP 210 (448)
T ss_pred HHhCCCc
Confidence 8888887
No 35
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.75 E-value=3e-17 Score=131.02 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=123.7
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
..+.+.+++++ +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+.+.|++.
T Consensus 25 ~~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (377)
T TIGR00890 25 LAPPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA 101 (377)
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777 677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH-HHHHhhh--hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP-WIAYYLA--DWQWISVITIFPLIVGL-IVAIFTP 205 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~-~~~~~~~--~w~~~~~~~~~~~~~~~-~~~~~~p 205 (208)
|++.+...+.....+.+++| ++|+++.++ ...+..+|..+++ ....... +||+.|++.++..++.. ..+++.+
T Consensus 102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFP-DKRGLASGI-IIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcC-cccHHHHHH-HHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999888888888888887 579999998 6777778876644 4444433 89999998877766643 3344443
No 36
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.75 E-value=8e-17 Score=130.25 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=131.1
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
..+.+.+++++ +..+.++..+++.++..+++++.|+++||+|||+.+..+.....++.++....++++.+.+.|++.
T Consensus 30 ~~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (394)
T PRK11652 30 AIADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQ 106 (394)
T ss_pred cHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34556677776 677899999999999999999999999999999999999999999998888889999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE 206 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe 206 (208)
|++.+...+....+..|.+++++|+++.++ ...+..++..++|.+++.+. +||+.|++.++...+ ..+..++.||
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 107 GLGTGVGGVMARTLPRDLYEGTQLRHANSL-LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred HhhhhHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999888878888899999999999999888 67788888889998888764 899999887665554 3444556777
Q ss_pred CC
Q psy2964 207 SA 208 (208)
Q Consensus 207 tp 208 (208)
+|
T Consensus 186 ~~ 187 (394)
T PRK11652 186 TR 187 (394)
T ss_pred cC
Confidence 53
No 37
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.75 E-value=6.3e-17 Score=134.51 Aligned_cols=152 Identities=22% Similarity=0.296 Sum_probs=130.8
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.++..+.++++.+.+.|++.|
T Consensus 43 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 119 (496)
T PRK03893 43 LTEVQGEFGL---TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIG 119 (496)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556677776 6677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
++.+...+....++.|.+|+++|++++++ ...+..+|..++|.+.+.+. +||+.|++..+..++.++....+||+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 120 MGMAGEYGSSATYVIESWPKHLRNKASGF-LISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999889999999999999999999999 67788899999998888765 89998887655544444445556664
No 38
>KOG2615|consensus
Probab=99.75 E-value=1.7e-17 Score=129.21 Aligned_cols=115 Identities=24% Similarity=0.325 Sum_probs=106.2
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....|.+.+.|++...+.++.+|.++||+|||+++..++...+++..+.+.+.|+..+...|++.|+..|.. ...-++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence 4456789999999999999999999999999999999999999999999999999977777799999998877 677899
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++|+.++|+|+.+++. ....+.+|.++||.+++++.
T Consensus 145 isdV~sek~r~l~ms~-v~~a~~lGfilGPmIGgyla 180 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSL-VGTAFGLGFILGPMIGGYLA 180 (451)
T ss_pred HHhhcChhhccceeee-eehhhhcchhhcchhhhHHH
Confidence 9999999999999999 78899999999999999986
No 39
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.75 E-value=7.1e-18 Score=134.75 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=129.3
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.+++.+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|
T Consensus 18 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (379)
T TIGR00881 18 MPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG 94 (379)
T ss_pred hHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455666776 6778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH-HHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP-WIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE 206 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~-~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe 206 (208)
++.+...+...+++.|++|+++|++++++ ......+|..++| .++..+. +|++.+++.+++.++ .++.+++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSF-WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred hhccccCCchHHHHHHhcCHhhheeeEee-hhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence 99999889999999999999999999998 6778888888888 4554443 899998887766555 4445555665
Q ss_pred C
Q psy2964 207 S 207 (208)
Q Consensus 207 t 207 (208)
+
T Consensus 174 ~ 174 (379)
T TIGR00881 174 S 174 (379)
T ss_pred C
Confidence 4
No 40
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.74 E-value=1.4e-16 Score=129.01 Aligned_cols=139 Identities=15% Similarity=0.090 Sum_probs=115.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....++..+.+.+++.+..+++|+++||+|||++++.+.++..++.+++....+. .+.|+++|++.+...|...++
T Consensus 36 s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~ 112 (393)
T PRK11195 36 PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGI 112 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998887776665553 678999999999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHhccCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQ--WISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~pet 207 (208)
+.|++|+++|++++++ .+....+|..+||.+++.+.+|. ..+.+.+...++..+..+.+||+
T Consensus 113 i~~~~~~~~~~~a~~~-~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 113 LTELLPGEKLVKANGW-MEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999 77788899999999999887544 34444443334444555667765
No 41
>PRK12382 putative transporter; Provisional
Probab=99.74 E-value=1.5e-16 Score=128.57 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=117.3
Q ss_pred eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---h-----hccHHHHHHHH
Q psy2964 56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---F-----SKDVVLFSLSR 127 (208)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~ 127 (208)
.+++++ +..+.++..+.+.++..+++++.|+++||+|||++++.+.+...++.+... . .++++.+++.|
T Consensus 43 ~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 119 (392)
T PRK12382 43 HHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGR 119 (392)
T ss_pred HHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHH
Confidence 456676 688899999999999999999999999999999999998887766544321 1 24778899999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
+++|++.+...+...+++.|..|+++|++++++ .+.+...|..++|.+++++. +|++.+.+..+..++........
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 198 (392)
T PRK12382 120 LILGFGESQLLTGALTWGLGLVGPKHSGKVMSW-NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTV 198 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccchhhhH-HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888999999999999999999 67788888899999888764 88887666544443333333334
Q ss_pred CC
Q psy2964 205 PE 206 (208)
Q Consensus 205 pe 206 (208)
||
T Consensus 199 ~~ 200 (392)
T PRK12382 199 RK 200 (392)
T ss_pred cC
Confidence 44
No 42
>PRK11043 putative transporter; Provisional
Probab=99.74 E-value=1.8e-16 Score=128.50 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=127.1
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
++.+.+++++ +..+.++..+++.++..+++++.|+++||+|||+.+..+..+..++..+..+.++++.+.+.|++.|
T Consensus 29 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (401)
T PRK11043 29 FKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA 105 (401)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4556667776 6778999999999999999999999999999999999999999998888888999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
++.+...+....++.|.+|++++.+..+. ......++..++|.+++.+. +|++.+++.++..++..+..++++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFAT-IMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99888777888899999999999888877 45567788888888888764 8999998887776665544444444
No 43
>KOG1330|consensus
Probab=99.73 E-value=4.8e-19 Score=140.89 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=132.1
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
++.+.+.+++ +....+++++++.+..+++++++|+++|||.||+++.++..+..++.++.+++..+|++.++|.+.|
T Consensus 56 ~~~v~~~fni---~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vG 132 (493)
T KOG1330|consen 56 LKEVQTYFNI---SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVG 132 (493)
T ss_pred hHHHHHhcCC---CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666 6778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH-HHhccCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLI-VAIFTPE 206 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~pe 206 (208)
+|.+...++.+.+++|.+|..+|++.+++ +.....+|..+|...+..+. .|||.|+..+++.++..+ ..++.+|
T Consensus 133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~i-fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 133 IGEASYSPIAPSLIADSFPDDKRSRVLGI-FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred cchhhhcccchhHhhhcCcchhhhHHHHH-hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999 77788888888877776665 599999998888777444 4444444
No 44
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.73 E-value=5.2e-17 Score=134.16 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=124.5
Q ss_pred cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhhhh
Q psy2964 58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--KDVVLFSLSRFLTGVGHF 135 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~ 135 (208)
++++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.++.... .+++.+++.|+++|++.+
T Consensus 70 ~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~ 146 (465)
T TIGR00894 70 NFKW---SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQG 146 (465)
T ss_pred CCCC---CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc
Confidence 4565 67788999999999999999999999999999999999999888888776543 567788999999999999
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH-HHhccCCCC
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLI-VAIFTPESA 208 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~petp 208 (208)
...+....+++|++|+++|++++++ ...+..+|..++|.+.+.+. +||+.|++.+++.++..+ .++..+|+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p 223 (465)
T TIGR00894 147 SVSPATHKIIVKWAPPKERSRLLGM-STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP 223 (465)
T ss_pred cchhhHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999 67788899999988887763 799999988877666444 334455544
No 45
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.73 E-value=1.7e-16 Score=128.45 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=129.8
Q ss_pred ccceeecccccccCCch-HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSN-LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
.+.+.+++++ +..+ .+.+.+++..++.+..++.|+++||+|.|+++.++.+...+..+++++++++..+.+.|++.
T Consensus 49 ~p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 49 TPYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678887 6667 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHH---HHHHHHHHHHHHHhccC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISV---ITIFPLIVGLIVAIFTP 205 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~---~~~~~~~~~~~~~~~~p 205 (208)
|++.|... ....++..++|+++|+++.|+ +..+..+|.+++++++.++. +|++... +......+++++.+++|
T Consensus 126 GvaEA~~~-A~~syI~~WfP~kER~ratsi-~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 126 SVTMAARI-AYSSYIFSLVPPSRYQRAAAY-SRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHH-HHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998 999999999999999999999 67789999999988888755 8886543 33334444666667776
No 46
>PRK10504 putative transporter; Provisional
Probab=99.73 E-value=1.6e-16 Score=131.41 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=128.7
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
..+.+.+++++ +..+.++..+.+.++..++.++.|+++||+|||+++..+..+..++.+++.+.++++.+.+.|+++
T Consensus 32 ~~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 108 (471)
T PRK10504 32 ALPSMAQSLGE---SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQ 108 (471)
T ss_pred HHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35666677776 566788889999999999999999999999999999999999998888888889999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPE 206 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe 206 (208)
|++.+...+....++.|.+|+++|+++.++ ......+|..++|.+++.+. +||+.|.+......+.. ......|+
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 109 GVGGAMMVPVGRLTVMKIVPREQYMAAMTF-VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HhhhHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998 66778889999999888775 89999988765554433 33334454
No 47
>PRK03699 putative transporter; Provisional
Probab=99.73 E-value=1.3e-16 Score=129.08 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=123.4
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+.+.++..+++++.|++.||+|||+++..+.++.+++..+..+.++++.+.+.|++.|
T Consensus 30 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G 106 (394)
T PRK03699 30 MGPIAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLG 106 (394)
T ss_pred hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 4566777776 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL 198 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 198 (208)
++.+...+....++.|.+|+++|+.+++. ......+|..++|.+.+.+. +||+.|.+.+++.++..
T Consensus 107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~ 176 (394)
T PRK03699 107 VVSGITMSIGTFLITHVYEGKQRGSRLLF-TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIF 176 (394)
T ss_pred HhhHhhccchhHHhhhhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 99998888889999999999999999887 55677788888887766542 89999988777665543
No 48
>TIGR00895 2A0115 benzoate transport.
Probab=99.73 E-value=6.1e-17 Score=130.27 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=130.6
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.++++.+++.+++.|
T Consensus 40 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 116 (398)
T TIGR00895 40 APAISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG 116 (398)
T ss_pred HHHHhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 3455566665 5677899999999999999999999999999999999999999999888888899999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
++.+...+...+++.|.+|+++|++++++ ......+|..+++.+++.+. +|++.+++.++...+ ..+...++||+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 117 LGLGGLMPNLNALVSEYAPKRFRGTAVGL-MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred cccccchhhHHHHHHHHcCHHhhchhHhh-HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999 77788899999998887764 899888887544443 44455667775
Q ss_pred C
Q psy2964 208 A 208 (208)
Q Consensus 208 p 208 (208)
|
T Consensus 196 ~ 196 (398)
T TIGR00895 196 I 196 (398)
T ss_pred C
Confidence 3
No 49
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.73 E-value=1.9e-16 Score=131.18 Aligned_cols=144 Identities=14% Similarity=0.052 Sum_probs=114.4
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.++++|++.|
T Consensus 59 ~~~l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 135 (476)
T PLN00028 59 LPIIRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG 135 (476)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566777887 6677888888999999999999999999999999999999999999888899999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH----HHHHHhh--------hhhHHHHHHHHHHHHHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL----PWIAYYL--------ADWQWISVITIFPLIVGLI 199 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~----~~~~~~~--------~~w~~~~~~~~~~~~~~~~ 199 (208)
++.+.. .....+++|++|+++|++++++ ......+|..++ |.+...+ .+||+.|++.+++.++..+
T Consensus 136 ~~~~~~-~~~~~~i~~~~~~~~rg~a~g~-~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 136 FSLATF-VSCQYWMSTMFNGKIVGTANGI-AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred HHHHhh-HHHHHHHHHhcChhheeHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence 988765 3456788999999999999998 443444444444 4333221 2799999988777666443
Q ss_pred H
Q psy2964 200 V 200 (208)
Q Consensus 200 ~ 200 (208)
.
T Consensus 214 ~ 214 (476)
T PLN00028 214 L 214 (476)
T ss_pred H
Confidence 3
No 50
>PRK15075 citrate-proton symporter; Provisional
Probab=99.72 E-value=2.3e-16 Score=129.29 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=112.7
Q ss_pred ccceeecccccccCCchH-HHHHHH-----HHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH----
Q psy2964 52 RRRRRRRDNWVCDGSSNL-AITRSI-----FFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV---- 121 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---- 121 (208)
.+.+.++++. ++.+. .+..+. ..++..+++++.|+++||+|||+.++.+.++..++..+++++++++
T Consensus 38 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 114 (434)
T PRK15075 38 ATAIAKTFFP---AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGL 114 (434)
T ss_pred HHHHHHHhCC---CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4556667765 33333 222222 2233357899999999999999999999999999999999998876
Q ss_pred ----HHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHH
Q psy2964 122 ----LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWI 186 (208)
Q Consensus 122 ----~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~ 186 (208)
.++++|+++|++.+...+....+++|++|+++|++++++ ......+|..+++.++..+ .+||+.
T Consensus 115 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~-~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~ 193 (434)
T PRK15075 115 AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW-QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIP 193 (434)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH
Confidence 367899999999999888889999999999999999998 5656666666666555543 289999
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q psy2964 187 SVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~pet 207 (208)
|++.++...+..+.....||+
T Consensus 194 f~~~~~~~~~~~~~~~~~~e~ 214 (434)
T PRK15075 194 FLIGCLIVPFIFLIRRSLEET 214 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 987655443333334445664
No 51
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.72 E-value=2.2e-16 Score=126.18 Aligned_cols=148 Identities=13% Similarity=0.155 Sum_probs=115.8
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVG 133 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~ 133 (208)
+.+++++ +..+.++..+++.++..+++++.|+++||+|||+.+..+.++..++.+++++.+ +++.+.+.|++.|++
T Consensus 28 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~ 104 (366)
T TIGR00886 28 IKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA 104 (366)
T ss_pred HHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5677787 677899999999999999999999999999999999999999999999999998 999999999999998
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHH-HHHHHHH-HH
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-------------DWQWISVI-TIFPLIV-GL 198 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~w~~~~~~-~~~~~~~-~~ 198 (208)
.+. .+....++.|++|+++|++++++ ......+|..+++.++..+. +||+.+++ .++...+ ..
T Consensus 105 ~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 105 GGS-FASCMPWISFFFPKKIQGTALGL-AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred chh-hHhHHHHHHHhcCHhhhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence 665 46678899999999999999998 55444555555544443221 69998843 3443333 44
Q ss_pred HHHhccCCC
Q psy2964 199 IVAIFTPES 207 (208)
Q Consensus 199 ~~~~~~pet 207 (208)
+.....+|+
T Consensus 183 ~~~~~~~~~ 191 (366)
T TIGR00886 183 LIFFVGADT 191 (366)
T ss_pred HHHHhcccC
Confidence 444445554
No 52
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.72 E-value=1.3e-16 Score=129.28 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=119.7
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---c-----cHHHHHHH
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---K-----DVVLFSLS 126 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-----~~~~~~~~ 126 (208)
+.+++++ +..+.++..+++.++..+++++.|+++||+|||++++.+.++.+++...+... + +++.+++.
T Consensus 42 i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (399)
T PRK05122 42 VHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLG 118 (399)
T ss_pred HHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Confidence 3455665 67789999999999999999999999999999999999998887766554432 2 46678899
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhc
Q psy2964 127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIF 203 (208)
Q Consensus 127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 203 (208)
|+++|++.+...+....++.|..|+++|++++++ ......+|..++|.+++.+. +|++.+++..+..++..+....
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 197 (399)
T PRK05122 119 RLLLGIGESLAGTGSILWGIGRVGALHTGRVISW-NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARP 197 (399)
T ss_pred HHHHHhhHHhhcchHHHHHHhhcChhhhccchhh-hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999989999999999999999999998 67777888888888887764 8998887766655554444443
Q ss_pred cCC
Q psy2964 204 TPE 206 (208)
Q Consensus 204 ~pe 206 (208)
.|+
T Consensus 198 ~~~ 200 (399)
T PRK05122 198 RPA 200 (399)
T ss_pred CCC
Confidence 444
No 53
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.72 E-value=4.4e-16 Score=126.41 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=126.6
Q ss_pred eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhh
Q psy2964 56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHF 135 (208)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 135 (208)
.++.++ +..+.++..+...++..+.+++.|+++||+|||+++..+..+..++.+++...++++.+.+.|++.|++.+
T Consensus 38 ~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 114 (400)
T PRK11646 38 VDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT 114 (400)
T ss_pred HHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345665 67789999999999999999999999999999999999999999999999989999999999999999988
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH-HHHHhccCC
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVG-LIVAIFTPE 206 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~-~~~~~~~pe 206 (208)
...+...+++.|.+|+++|++++++ ......+|..++|.+++++. +|++.|++.++..++. ++..+..||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 115 LFDPPRTALVIKLIRPHQRGRFFSL-LMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8888889999999999999999999 67788899999999888775 8999988876665543 333444555
No 54
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.71 E-value=3.1e-16 Score=108.08 Aligned_cols=133 Identities=20% Similarity=0.330 Sum_probs=114.1
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCch
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKW 153 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~ 153 (208)
+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 34567888999999999999999999999999998888888888899999999999999999988999999999999999
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccCCC
Q psy2964 154 RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTPES 207 (208)
Q Consensus 154 r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pet 207 (208)
|++..++ ......+|..++|.+.+.+. +|++.+++.+....+. ....+..||+
T Consensus 85 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 85 RGVALGL-MSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhHHHHH-HHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999 67788899999998888775 7888888877666654 4445556764
No 55
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.71 E-value=3.1e-16 Score=129.21 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=120.5
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHH
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KDVVLFSLSRF 128 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 128 (208)
+.+.++ ++ +..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++. .+++.+++.|+
T Consensus 53 p~l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
T PRK11273 53 PYLVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 128 (452)
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 444444 55 67789999999999999999999999999999999999999999888877765 36778889999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHH-HHHHHHHHhh---hhhHHHHHHHHHHHHH-HHHHHhc
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSE-VALPWIAYYL---ADWQWISVITIFPLIV-GLIVAIF 203 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~~---~~w~~~~~~~~~~~~~-~~~~~~~ 203 (208)
+.|++.+...+.....+.|++|+++|++++++ ++.+..+|. ..+|.+.... .+||+.|++.+++.++ .++..++
T Consensus 129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred HHHHHHhccchHHHHHHHHhCChHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888878778889999999999999999 676777775 4455543222 2999999987766555 4555566
Q ss_pred cCCCC
Q psy2964 204 TPESA 208 (208)
Q Consensus 204 ~petp 208 (208)
+||+|
T Consensus 208 ~~~~~ 212 (452)
T PRK11273 208 MRDTP 212 (452)
T ss_pred ccCCH
Confidence 67654
No 56
>KOG2532|consensus
Probab=99.71 E-value=2e-16 Score=129.71 Aligned_cols=149 Identities=22% Similarity=0.298 Sum_probs=128.6
Q ss_pred eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhh
Q psy2964 56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVG 133 (208)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~ 133 (208)
..++++ ++.+.+++.+.+..|+++++++.|++.||+|-|+++..+.++.+++.+++..+. +++.+++.|+++|++
T Consensus 65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 456777 788999999999999999999999999999999999999999999999988863 556778999999999
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH-hccCCCC
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVA-IFTPESA 208 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~-~~~petp 208 (208)
.|..+|....+...+.|+++|++..++ ...+..+|.+++-.+++++- ||++.|++.++..++..+++ ++..|+|
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ai-l~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAI-LTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999 56577788888876776664 89999999998888855444 4445554
No 57
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.71 E-value=8.7e-16 Score=132.08 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964 70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV 149 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 149 (208)
.....+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.+...+..+++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677899999999999999999999999999999999988888888888888888888888888899999999999
Q ss_pred CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
|++.|++++|+ ......+|.+++|.+++.+. +...++++.++..+++.++..++|||.
T Consensus 678 Pt~~Rgta~Gi-~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGF-LNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999 56688899999999987664 334567777776666666666779973
No 58
>PRK10054 putative transporter; Provisional
Probab=99.70 E-value=7.4e-16 Score=124.88 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=123.9
Q ss_pred eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhh
Q psy2964 56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHF 135 (208)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 135 (208)
.+++++ +..+.++..+++.++..+++++.|+++||+|||+++..+.+...++.++.++.++++.+++++.+.|.+.+
T Consensus 35 ~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 111 (395)
T PRK10054 35 SRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS 111 (395)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345676 67789999999999999999999999999999999999999998988888889999888888988888777
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH-HHHhccCC
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGL-IVAIFTPE 206 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~-~~~~~~pe 206 (208)
...+....+..|..|+++|++++++ ......+|..++|.+++++. +|+..|++.++..++.. +..+.+||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 112 VFSTVLKAWFADNLSSTSKTKIFSL-NYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999999 56677889999999988875 89999988776666643 33344444
No 59
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.70 E-value=4.2e-16 Score=123.13 Aligned_cols=141 Identities=24% Similarity=0.375 Sum_probs=124.8
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 134 (208)
+.++++. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.......++++.+.+.|++.|++.
T Consensus 25 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 101 (352)
T cd06174 25 LAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG 101 (352)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence 3344444 5678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
+...+....++.|.+|+++|++.+++ ......+|..++|.+++.+. +|++.+++.+++.++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T cd06174 102 GALYPAAAALIAEWFPPKERGRALGL-FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168 (352)
T ss_pred ccccHhHHHHHHHhCCccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 67788999999999988876 699988887766655443
No 60
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.70 E-value=1.3e-15 Score=124.08 Aligned_cols=143 Identities=14% Similarity=-0.009 Sum_probs=123.0
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF---SKDVVLFSLSRF 128 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 128 (208)
.+.+.+++++ +..+.++..+.+.+++.+++++.|++.||+|||++++.+.++.+++.++... .++++.+++.|+
T Consensus 26 ~~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~ 102 (410)
T TIGR00885 26 VPQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF 102 (410)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4566777787 6778999999999999999999999999999999999999999999877543 368899999999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----------------------------
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL---------------------------- 180 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------------------------- 180 (208)
+.|++.+...+..+.++.+..|+++|++.+++ .+....+|..++|.++..+
T Consensus 103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (410)
T TIGR00885 103 ILTAGLGFLETAANPYILVMGPESTATRRLNL-AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSD 181 (410)
T ss_pred HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999998 6778888998888887655
Q ss_pred -hhhHHHHHHHHHHHHHHH
Q psy2964 181 -ADWQWISVITIFPLIVGL 198 (208)
Q Consensus 181 -~~w~~~~~~~~~~~~~~~ 198 (208)
.+||++|++.+++.++..
T Consensus 182 ~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 182 LASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 149999988777655533
No 61
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.69 E-value=5e-16 Score=127.43 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=118.8
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++.+.. .+++.+.+.|++.|++.+...+.
T Consensus 59 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~ 138 (438)
T TIGR00712 59 SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPP 138 (438)
T ss_pred CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHH
Confidence 67788999999999999999999999999999999999999988888776654 45677788899999998888888
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh-h---hhhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY-L---ADWQWISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~-~---~~w~~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
....+.|++|+++|++++++ ++....+|..++|.+.+. . .+||+.|++.+++.++ .++.++++||+|
T Consensus 139 ~~~~i~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 139 CGRTMVHWWSQSERGTIVSI-WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHhcCcccchhHHHH-HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 88999999999999999999 677888888887766543 2 2899999988777665 444556667653
No 62
>KOG2533|consensus
Probab=99.69 E-value=2.7e-16 Score=129.39 Aligned_cols=143 Identities=22% Similarity=0.311 Sum_probs=128.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
...+.+.+.++++++++++.++++.+.||++..+.+....++..+..++....+|++.+++.|++.|+..+..+|....+
T Consensus 79 ~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 79 VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 45678999999999999999999999999998888888888888887777779999999999999999999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL---------ADWQWISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~w~~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
++.++.+++|+..+++ +.....+|+++|.+++..+ .||||.|++.+++.++ ++++.+++|+.|
T Consensus 159 lg~wy~~~e~g~r~~~-~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGI-WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred HHhhcChhhhhhhHHH-HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 9999999999999999 7778889999999888873 2999999999888777 667778899887
No 63
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.69 E-value=1.8e-15 Score=121.26 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=117.3
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHH-HHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLG-SHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 133 (208)
+.++++. +..+.++..+++.+...+.+++.|+++||+|||+.++. +.....++..+...+++++.+++.|++.|.+
T Consensus 24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 100 (375)
T TIGR00899 24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSF 100 (375)
T ss_pred HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 3456676 67789999999999999999999999999999887654 5555566667778889999888999988877
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhH--HhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccCCC
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFA--MTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTPES 207 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pet 207 (208)
.+...+....+..|..|++.|+.. .+. ......+|..++|.+++.+. +||+.|++.+++.++. ++.++.+||.
T Consensus 101 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 101 ASTANPQLFALAREHADRTGREAVMFSSV-MRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred hhhhHHHHHHHHHHHhhhcchhhHHHHHH-HHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 777778888888999888777754 355 45566788899988888775 8999999987776654 4445557775
Q ss_pred C
Q psy2964 208 A 208 (208)
Q Consensus 208 p 208 (208)
|
T Consensus 180 ~ 180 (375)
T TIGR00899 180 P 180 (375)
T ss_pred c
Confidence 4
No 64
>PRK10133 L-fucose transporter; Provisional
Probab=99.68 E-value=2.3e-15 Score=123.51 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=108.1
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhhccHHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFSKDVVLFSLSRF 128 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 128 (208)
.+.+.+++++ +..+.++..+.+.+++.+++++.|++.||+|||+++..+.++..++.+++ ...++++.++++|+
T Consensus 49 ~p~i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~ 125 (438)
T PRK10133 49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566677777 67889999999999999999999999999999999999999999998765 45789999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 178 (208)
++|++.+...+..+.++.|..|+++|...+++ .+..+.+|..++|.++.
T Consensus 126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~-~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNL-AQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877777777878 67788888888887754
No 65
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.67 E-value=1.2e-19 Score=149.12 Aligned_cols=142 Identities=30% Similarity=0.594 Sum_probs=127.0
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK---DVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
+...++..+...+|..+|++++|.++||+|||+.++.+.++..++.++.++++ +++.+.++|++.|++.|...+...
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34578889999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h---hHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D---WQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
.++.|..|+++|++..++ .+..+.+|..++..++.... + ||+.+.+.+++.++.++..+++||||
T Consensus 125 ~~~~E~~~~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSL-FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999887 77777888777766655442 4 99999998888877777778899998
No 66
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.67 E-value=1.6e-15 Score=125.13 Aligned_cols=142 Identities=23% Similarity=0.207 Sum_probs=118.7
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHH-HHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSL-SRFLT 130 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 130 (208)
.+.+.+++++ +..+.++..+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++++.+++ .|++.
T Consensus 42 ~~~i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 118 (455)
T TIGR00892 42 FKELQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFIT 118 (455)
T ss_pred HHHHHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556667776 6678889999999999999999999999999999999999999999988888888888765 46899
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL 198 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 198 (208)
|++.+...+....++.++++ ++|++++++ ...+..+|..++|.+.+.+. +||+.|++.+++.++..
T Consensus 119 G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~-~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 187 (455)
T TIGR00892 119 GLGLAFNFQPSLTMLGKYFY-RRRPLANGL-AMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCC 187 (455)
T ss_pred HhcchhhhhHHHHHHHHHHH-hhHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99988766677788889985 789999999 67788888888888877654 89999998877665543
No 67
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.67 E-value=4.6e-15 Score=120.27 Aligned_cols=153 Identities=17% Similarity=0.037 Sum_probs=121.9
Q ss_pred ccceeecccccccCC--chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGS--SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
++.+.+++++...+. ...++..+++.++..+++++.|+++||+|||+++..+.+..+++.++....++++.+++.|++
T Consensus 37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (408)
T PRK09874 37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL 116 (408)
T ss_pred HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455556666521111 124788899999999999999999999999999999999999998888888999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTP 205 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~p 205 (208)
.|++.+. .+....++.+.+|+++|++++++ ......+|..++|.+++.+. +|++.+++.++..++.. ...++.|
T Consensus 117 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 117 LGLLGGF-VPNANALIATQVPRNKSGWALGT-LSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHHhhhh-HHhHHHHHHHhcCHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987654 57778889999999999999998 67778889999998888764 89999888777665533 3444455
Q ss_pred C
Q psy2964 206 E 206 (208)
Q Consensus 206 e 206 (208)
|
T Consensus 195 ~ 195 (408)
T PRK09874 195 E 195 (408)
T ss_pred c
Confidence 4
No 68
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.66 E-value=4.5e-15 Score=119.68 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=114.4
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++..+.+.+++++.++++|+++|
T Consensus 29 lp~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (381)
T PRK03633 29 VPLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAG 105 (381)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5666677776 6778999999999999999999999999999999999999999999999899999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.+...+.....+.+..++++|+++++. +.....+|..++|.+++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 106 IGCAMIWVVVESALMCSGTSRNRGRLLAA-YMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 99998888888888899999999999999 67788999999999998875
No 69
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.66 E-value=1.3e-15 Score=124.11 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=123.2
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-----hccHHHHHHHH
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-----SKDVVLFSLSR 127 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 127 (208)
+.+..+++. +..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++...... .++++.+.+.|
T Consensus 41 ~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (417)
T PRK10489 41 PVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLG 117 (417)
T ss_pred HHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 344444443 5678899999999999999999999999999999999888777766554432 46788888999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
++.|++.+...+....++.|..|+++|+++.++ ......+|..++|.+++.+. +|++.+++.++..++..+..+.+
T Consensus 118 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (417)
T PRK10489 118 LWDGFFGSLGVTALLAATPALVGRENLMQAGAI-TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL 196 (417)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH-HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999888888889999999999999999998 66788899999999988764 78999888777766666556666
Q ss_pred CCC
Q psy2964 205 PES 207 (208)
Q Consensus 205 pet 207 (208)
||+
T Consensus 197 ~~~ 199 (417)
T PRK10489 197 PAL 199 (417)
T ss_pred CCC
Confidence 664
No 70
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.66 E-value=4e-15 Score=119.47 Aligned_cols=131 Identities=19% Similarity=0.253 Sum_probs=108.3
Q ss_pred HHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964 77 FLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV--------LFSLSRFLTGVGHFNAFIFYYIIVLEC 148 (208)
Q Consensus 77 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~ 148 (208)
.++..+++++.|+++||+|||+++..+.++..++..+.++.++++ .+++.|+++|++.+...+....++.|.
T Consensus 45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~ 124 (394)
T TIGR00883 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY 124 (394)
T ss_pred HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence 344457899999999999999999999999999999999888764 477889999999999889999999999
Q ss_pred cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
+|+++|++..++ ...+..+|..+++.+...+ .+||+.+++.+++.++..+.....||+|
T Consensus 125 ~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T TIGR00883 125 APPGKRGFYGSF-QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP 194 (394)
T ss_pred CCcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 999999999988 6778888888888766543 1799998887776666555555666653
No 71
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.65 E-value=3.3e-16 Score=133.53 Aligned_cols=151 Identities=16% Similarity=0.139 Sum_probs=126.6
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-------------
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK------------- 118 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------- 118 (208)
.+++.++|++ ++.+.+++.+.+.+++.++.++.+++.||+|||+.+.++.++.+++++++++.+
T Consensus 56 l~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 56 LTTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred chhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 5677778887 677899999999999999999999999999999999999999999998877653
Q ss_pred --------------------------------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhH
Q psy2964 119 --------------------------------------DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTF 160 (208)
Q Consensus 119 --------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~ 160 (208)
.+..++++|+++|++.+...+...+++.|.+|+++|++++++
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 245667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------------------------hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 161 PFLIFYTVSEVALPWIAYYLA-------------------------DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 161 ~~~~~~~~g~~~~~~~~~~~~-------------------------~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
+.....+|..+++++++.+. .|+..|++.+++.++..+.++++|+
T Consensus 213 -~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 213 -LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred -HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 67788899999988887653 2566677777766664444555554
No 72
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.64 E-value=4.7e-14 Score=115.37 Aligned_cols=111 Identities=10% Similarity=-0.007 Sum_probs=97.3
Q ss_pred cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhh
Q psy2964 58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGV 132 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~ 132 (208)
++++ +..+.+++.+++.+++.++.++.|++.||+|+|+++..+.++..+..++.+++ ++++.+++.|++.|+
T Consensus 64 ~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi 140 (462)
T PRK15034 64 GFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF 140 (462)
T ss_pred hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH
Confidence 6777 67789999999999999999999999999999999999999999999888876 799999999999999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL 173 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 173 (208)
+ +..++.....+++++|+++|++++|+ ......+|..++
T Consensus 141 g-g~~f~~~~~~vs~wfp~~~rG~A~Gi-~~g~G~~G~~l~ 179 (462)
T PRK15034 141 A-GANFASSMGNISFFFPKAKQGSALGI-NGGLGNLGVSVM 179 (462)
T ss_pred H-HHhHHHHHHHHHHHCCHhHhHHHHHH-HHHHHhhHHHHH
Confidence 8 66789999999999999999999999 433444454433
No 73
>KOG3764|consensus
Probab=99.64 E-value=1.6e-15 Score=118.98 Aligned_cols=140 Identities=17% Similarity=0.151 Sum_probs=126.4
Q ss_pred cCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 64 DGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+++.+.+++.+...+.+.+..++.|.+.||+|+|..+++|+.++.++.++.++..+++.++++|.++|++.+.......+
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCch-hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhcc
Q psy2964 144 IVLECVGPKW-RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFT 204 (208)
Q Consensus 144 ~~~e~~~~~~-r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~ 204 (208)
++++.+|.++ |++++|+.. .+..+|..++|.+++.+. |.+.+|++.+++.++ +.+..+.+
T Consensus 183 mlAd~f~~d~er~~vmGial-gfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIAL-GFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHcccchhhhHHHHHHH-HHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 9999998665 799999954 478899999999999987 888999999888877 44444444
No 74
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.64 E-value=4.5e-15 Score=123.25 Aligned_cols=135 Identities=17% Similarity=0.039 Sum_probs=112.0
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhccHHH-HHHHHHHHhhhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSKDVVL-FSLSRFLTGVGH 134 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~ 134 (208)
+++++ +....++..+.+.....+..+++|+++|| +|||++++.+.++..++++++++..+... +.+.|.++|++.
T Consensus 43 ~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~ 119 (489)
T PRK10207 43 KQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGN 119 (489)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcc
Confidence 34565 56667888888888888888999999999 99999999999999999999888765443 457899999999
Q ss_pred hhHHHHHHHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLI 195 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~ 195 (208)
|...+...+++.|.+|+++ |..++++ +..+.++|..++|.+++++. ||++.|++.++..+
T Consensus 120 g~~~~~~~~li~~~~p~~~~~~~~~~~~-~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 120 GLFKANPASLLSKCYPPKDPRLDGAFTL-FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred ccccCCHHHHHHHhcCCCchhhhcchhH-HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 9998899999999998774 4667777 67788899999988888876 89999988654333
No 75
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.63 E-value=1.9e-14 Score=114.87 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=116.9
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
...+.+.+++++ +..+.++..+++.++..+++++.|+++||+|||+++..+.+...++.+.. ..++.+.+++.|++
T Consensus 21 ~~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 21 PLLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTAL 96 (355)
T ss_pred ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 335667778887 67889999999999999999999999999999999999998888877766 67888888999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHH
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIV 196 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~ 196 (208)
.|++.+...+....++.|.+| ++|++++++ ++....+|..+++.+.+.+. +||+.|.+.++..++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGL-YSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999998887788888889886 689999998 67777888888887766553 388888766554433
No 76
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.62 E-value=1.3e-14 Score=120.15 Aligned_cols=137 Identities=16% Similarity=0.094 Sum_probs=119.0
Q ss_pred ccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964 59 DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 137 (208)
+++ +..+.++..+.+.++..++++++|+++|| +|||+++.++.++.+++.++.++.++++.+.+.+.+.|++.+..
T Consensus 43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence 565 67789999999999999999999999999 89999999999999999999988888888888999999999988
Q ss_pred HHHHHHHHHhhcCCch---hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 138 FIFYYIIVLECVGPKW---RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
.+...++++|.+|+++ |+.+.++ +.....+|..++|.+++.+. +|++.|.+.++..+++.+
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~-~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTL-FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehh-HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 8999999999998754 8888888 66788899999999998875 899999887655444433
No 77
>KOG0252|consensus
Probab=99.61 E-value=2.3e-15 Score=119.94 Aligned_cols=142 Identities=22% Similarity=0.349 Sum_probs=115.9
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHhhhhhhHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-------DVVLFSLSRFLTGVGHFNAF 138 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~ 138 (208)
+...+.+..+..+|.++|++++|++.||+|||+++...++++.++++++++.. -.+++.+.|++.|+|.|+-+
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 34567788899999999999999999999999999999999999998777752 24677789999999999999
Q ss_pred HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----h--------------hhHHHHHHHHHHHHHHHHH
Q psy2964 139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----A--------------DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~--------------~w~~~~~~~~~~~~~~~~~ 200 (208)
|+..+..+|....+.|+...+..++ ..++|...|..++..+ . -||..+.+.+++++..+..
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa-~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~ 241 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFA-MQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF 241 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEE-ecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987776322 4444444443333322 1 4999999999999988888
Q ss_pred HhccCCCC
Q psy2964 201 AIFTPESA 208 (208)
Q Consensus 201 ~~~~petp 208 (208)
-..+|||+
T Consensus 242 Rl~M~Et~ 249 (538)
T KOG0252|consen 242 RLKMPETA 249 (538)
T ss_pred hhcCCcch
Confidence 88899985
No 78
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.61 E-value=2.1e-14 Score=130.26 Aligned_cols=114 Identities=20% Similarity=0.092 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---hhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---FSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
...+++.+++.++..++++++|+++||+|||++++++.++.++..++.. ..++++.++++|++.|++.+...+...+
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 4568888999999999999999999999999999988876665554433 3478899999999999999999999999
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.|++|+++|++++++ ...+..+|.++++.+++++.
T Consensus 127 ~i~~~~~~~~r~~~~~~-~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 127 IIPELVGKENLSRANGL-LEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred hhHHhcCcccchhhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 77788899999999888764
No 79
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.61 E-value=2.1e-14 Score=130.23 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHH---HHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSH---VVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
...++..+++.+++.+.++++|+++||+|||+++.... +...+........++++.++++|+++|++.+...+...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 35677888999999999999999999999999754322 222222222233478999999999999999999999999
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
++.+++|+++|++++|+ .+.+..+|.+++|.+++++. +|++.|+...+..++.+++.+.+|++
T Consensus 132 ~l~~~~~~~~~~~a~~~-~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 132 ILPDHLNKDELLGANAL-VEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred hhHhhcCccccchhhHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999 78899999999999999886 88888855555555555555666654
No 80
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.61 E-value=5e-14 Score=114.44 Aligned_cols=132 Identities=13% Similarity=0.073 Sum_probs=107.0
Q ss_pred ceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---h-hccHHHHHHHHHH
Q psy2964 54 RRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---F-SKDVVLFSLSRFL 129 (208)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l 129 (208)
.+.+++++ +..+.++..+.+.++..++.++.|+++||+|||+++..+..+.+++.++.. . .++++.+.+.|++
T Consensus 38 ~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 114 (402)
T TIGR00897 38 PFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI 114 (402)
T ss_pred HHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence 34456666 677899999999999999999999999999999999999999888766542 3 2578888899999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHH-HHHHHHHHhhh---hhHHHHHH
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSE-VALPWIAYYLA---DWQWISVI 189 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~~~---~w~~~~~~ 189 (208)
.|++.+...+....++.+.+|+++|++++|+ .+....+|. .++|.+++.+. +|+..++.
T Consensus 115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGW-FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHcchHHHHhHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 9999888777778888999999999999999 666777886 57888876543 65544443
No 81
>PTZ00207 hypothetical protein; Provisional
Probab=99.59 E-value=1e-13 Score=116.37 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=114.8
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh------ccHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS------KDVVLFSL 125 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~ 125 (208)
.+.+.+++++ +..+.+++.++. .....++++.|++.||+|||+++.++.++..++.++++++ ++++.+.+
T Consensus 50 s~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l 125 (591)
T PTZ00207 50 SGAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV 125 (591)
T ss_pred HHHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 4566777777 566677766653 3445677789999999999999999999999999998887 68999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHH-HHHHHHhhh-hhHHHHHHHHHHHHH-HHHHHh
Q psy2964 126 SRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVA-LPWIAYYLA-DWQWISVITIFPLIV-GLIVAI 202 (208)
Q Consensus 126 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~w~~~~~~~~~~~~~-~~~~~~ 202 (208)
.|++.|++.+...+.....+.+++| ++|++++|+ ...+.++|..+ +++...++. +|+..+++.++..++ +++.+.
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi-~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAI-MKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888888899999996 789999999 66688888864 555555554 788877777666555 444444
Q ss_pred cc
Q psy2964 203 FT 204 (208)
Q Consensus 203 ~~ 204 (208)
++
T Consensus 204 ~v 205 (591)
T PTZ00207 204 FM 205 (591)
T ss_pred he
Confidence 33
No 82
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.58 E-value=6.1e-14 Score=117.29 Aligned_cols=132 Identities=23% Similarity=0.323 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
......|+.+...++..+..++.|+++|.+|||..++.+.++..++.+..+.++|...++.+..+.|++.|... .....
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~ 154 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALA 154 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999987775 55667
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL 198 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 198 (208)
++|..|.|.|..+.++ ...........+|.++..+. +|||.|++.++...+.+
T Consensus 155 isEl~p~k~R~~~~~~-~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAI-ASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHhcccchhhhHhHH-HHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 8999999999887766 44444444445666665543 89999998877655533
No 83
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.58 E-value=2.4e-13 Score=113.18 Aligned_cols=142 Identities=17% Similarity=0.111 Sum_probs=104.3
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH---HhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL---TPFSKDVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
.....+......++..++.++.|+++||+|||+++..+.+...+.... ....++...+.+++++.|++.+.......
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 364 (490)
T PRK10642 285 EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMA 364 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667778889999999999999999999988877654433322 22234566777888888887777777788
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
.++.|.+|++.|++++++.++.+.. ++.++|.+.+++. +|+.++++..++.++.++..+++||||
T Consensus 365 ~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~ 433 (490)
T PRK10642 365 STLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETA 433 (490)
T ss_pred HHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999986676554 4566776666543 466666666666666666666789987
No 84
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.54 E-value=3.6e-13 Score=107.48 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=112.7
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-----CchHHH-HHHHHHHHHHHHHHhhh---ccHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-----GRITAV-LGSHVVSFLGVALTPFS---KDVVL 122 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~ 122 (208)
.+.+.+++++ +..+.++...+ .+...+ .+++|+++||+ |||+.+ +.+.+..++...+.++. .+.+.
T Consensus 11 ~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 11 LPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred HHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 3456667777 56677777544 444444 89999999998 899974 56666666666666665 45556
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h--------hHHHHHHHH
Q psy2964 123 FSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D--------WQWISVITI 191 (208)
Q Consensus 123 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--------w~~~~~~~~ 191 (208)
+....++.+++.+...+...+++.|.+|+|+|+++.++ ...+..+|..+++.+++.+. + ||..|++.+
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a 164 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTI-YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA 164 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence 66677788888888889999999999999999999998 67788899999988887664 5 999999888
Q ss_pred HHHHHHHHHHh-ccCCC
Q psy2964 192 FPLIVGLIVAI-FTPES 207 (208)
Q Consensus 192 ~~~~~~~~~~~-~~pet 207 (208)
+..++..+..+ ..||.
T Consensus 165 i~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 165 LLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 77666554433 35653
No 85
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.53 E-value=7.7e-13 Score=107.18 Aligned_cols=141 Identities=10% Similarity=-0.050 Sum_probs=110.8
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+..+.++..++..++..++.++.|+++||+|||+.+..+.....+........++.+..++.+++.+++.+...+....+
T Consensus 250 ~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~ 329 (393)
T PRK15011 250 PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLY 329 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777788899999999999999998887766665555445556777777788888888777777777788
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
..|..|+ +|++++++ ++....+|..++|.+++.+. +|+..+.+..++.++.++..+..||+
T Consensus 330 ~~~~~p~-~~g~~~~~-~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 330 FQDLMPG-QAGSATTL-YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred HHHhCCC-CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 8999985 58999998 55567889999999988875 78888888877777777777777764
No 86
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.53 E-value=7.5e-13 Score=107.51 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=116.2
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-----CchH-HHHHHHHHHHHHHHHHhhh---ccHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-----GRIT-AVLGSHVVSFLGVALTPFS---KDVVL 122 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~ 122 (208)
.+.+..+.++ +..+++++..+... .+.++++|+++||+ |||+ .+..+.++.+++..+..+. ++++.
T Consensus 22 ~~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~ 96 (402)
T PRK11902 22 LQAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWP 96 (402)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 3455556676 67788888666554 68999999999999 8875 6888788887777776665 35677
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964 123 FSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL 198 (208)
Q Consensus 123 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 198 (208)
+.+..++.+++.+...+...+++.|..|+++|+++.++ ...+..+|..+++.++..+. +||..|++.++..++..
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~-~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~ 175 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAV-KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA 175 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH-HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 77777778888888889999999999999999999999 66778888888877666653 79999998877766655
Q ss_pred HHHhccCCC
Q psy2964 199 IVAIFTPES 207 (208)
Q Consensus 199 ~~~~~~pet 207 (208)
+..++.||+
T Consensus 176 l~~~~~~e~ 184 (402)
T PRK11902 176 LTTLWAPEP 184 (402)
T ss_pred HHHHhcCCC
Confidence 555566664
No 87
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.52 E-value=1.2e-12 Score=105.96 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=103.4
Q ss_pred eeecccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhCchHHHH-HHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYGRITAVL-GSHVVSFLGVALTPFSKDVVLFSLSRFLTGV 132 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 132 (208)
+.+++++ +..+.++..+...+ +..++.+.+++ +||+|||+.++ .+.+...+...+.+++++++.+++.+.+.+.
T Consensus 42 l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (393)
T PRK15011 42 LTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSS 117 (393)
T ss_pred HHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456676 56778888766555 55566655666 99999998754 5555555666677788888887666655554
Q ss_pred hhhhHHHHHHHHHHhhcCCchhh--hHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRT--FAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE 206 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe 206 (208)
..+...+....++.+..+++.|. ...++ ...+..+|..++|.+++.+. |||..|++.++..++ ..+.++++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 118 FGSTANPQMFALAREHADKTGREAVMFSSF-LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHHhhHHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 44566788888888887766553 23345 55677889999999998875 999999888776655 4445556776
Q ss_pred C
Q psy2964 207 S 207 (208)
Q Consensus 207 t 207 (208)
.
T Consensus 197 ~ 197 (393)
T PRK15011 197 M 197 (393)
T ss_pred c
Confidence 5
No 88
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.51 E-value=1.9e-12 Score=107.81 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=102.3
Q ss_pred hHHHHHHHhhhhh-----CchHH-HHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q psy2964 82 LGGFILSWVADRY-----GRITA-VLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK 152 (208)
Q Consensus 82 ~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 152 (208)
++++++|+++||+ |||+. +..+.+..+++..++++. ++++.+.+.+++.+++.+...+...++..|++|++
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 6899999999999 99986 557776666666666664 46778888999999999999899999999999999
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 153 WRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 153 ~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
+|+++.++ ...++.+|..+++.+...+. |||..|++.++..++..+..++.||+
T Consensus 140 ~rg~~~~i-~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~ 197 (491)
T PRK11010 140 ERGAGAAI-SVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEP 197 (491)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999 67788889888887776653 79999999887766665555557775
No 89
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.51 E-value=1.9e-12 Score=105.80 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK----DVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
...+...++..++..++.++.|+++||+|||+++..+.++..++..+..... +.+.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888889999999999999999999999999999888766665532 235566788999999888888889
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
.++.|.+|++.|++++|+.....+.+|..++|.+++.+. +|+..|.+.+++.++ +.+.++++||+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999433567889999999998764 378888877766555 45556666764
No 90
>KOG0253|consensus
Probab=99.50 E-value=1.9e-13 Score=106.69 Aligned_cols=141 Identities=19% Similarity=0.264 Sum_probs=125.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+..+.+++......++.+++..+|.++|++|||+.+.+..++.++...+.+.++|+..+.+.|.+.|+|.|+ .|...++
T Consensus 111 s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~ 189 (528)
T KOG0253|consen 111 SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAI 189 (528)
T ss_pred hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHH
Confidence 456677888889999999999999999999999999999999999999999999999999999999999999 6888999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
-.|..|...|...+=. . ..|.+|.+....++.... ||||.......+..+.....+++||||
T Consensus 190 yle~lp~~~r~~~~V~-~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESp 254 (528)
T KOG0253|consen 190 YLEFLPSSHRWLLTVM-S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESP 254 (528)
T ss_pred HHHhccCcCCCcchhH-H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence 9999999999987633 4 688899988888877765 999988888888777888889999997
No 91
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.50 E-value=2.4e-12 Score=104.33 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC 148 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 148 (208)
.++..+.+.++..++.++.|++.||+|||+.+..+..+..++..+....++.+.+.+..++.|++.+...+.......|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45556778888899999999999999999999998888888877777778888888889999999988888888888899
Q ss_pred cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
.|+++|+++.++ ++....+|..++|.+.+.+. +|++.+++.++..+++++....+
T Consensus 331 ~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 331 VPPQNRGAALGA-YSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 67677788888777777664 78888888777766655544433
No 92
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.50 E-value=7e-13 Score=109.53 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=104.5
Q ss_pred cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhhh
Q psy2964 58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGHF 135 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~ 135 (208)
++++ +..+.+.+.+.+.....++++++|+++||+ |||++++++.++..++.++.+..+ +...+.+...+.+++.|
T Consensus 39 ~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 39 QLKY---DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 3565 566788888999999999999999999999 999999999999999887665533 22323333344445556
Q ss_pred hHHHHHHHHHHhhcCCc--hhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964 136 NAFIFYYIIVLECVGPK--WRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL 198 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 198 (208)
...+...++++|.+|++ +|..+.++.+. ...+|..++|.+.+++. +|++.|.+.++..++++
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~-~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYA-AGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHH-HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 65577788999999876 78889999555 56689999999999885 89999988665444433
No 93
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.49 E-value=9e-13 Score=109.97 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=106.2
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGH 134 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~ 134 (208)
+++++ +....++..+.+........+++|+++|| +|||+.+..+.++..++..++++++ +.+.+.+.+.++|++.
T Consensus 50 ~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~ 126 (500)
T PRK09584 50 KQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN 126 (500)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 45665 45556666666665556666789999999 5999999999999999988888764 4566677889999999
Q ss_pred hhHHHHHHHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV 196 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 196 (208)
|...+...+++.|++|+++ |..+.++ +..+..+|..++|.+++++. ||++.|.+.++...+
T Consensus 127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~-~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 127 GLFKANPSSLLSTCYEKDDPRLDGAFTM-YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred hcccCCHHHHHHHhcCCCchhhhhcchH-HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9888888899999998653 4456666 56688899999999998885 899999887654333
No 94
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.48 E-value=2e-12 Score=102.07 Aligned_cols=139 Identities=22% Similarity=0.299 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchH-HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRIT-AVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
++.+.++......++..++.++.+++.||+|||+ .+..+..+..++.......++.+...+..++.|++.+...+....
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 288 (352)
T cd06174 209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence 5566788889999999999999999999999999 999999999999998888888888889999999999999999999
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
++.|..|+++|++.+++ .+....+|..++|.+.+.+. +|++.+++.+++.++..+..+++
T Consensus 289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 289 LASELAPPEARGTASGL-FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHhhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 99999999999999999 77788899999999988875 88899998888877766555443
No 95
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.47 E-value=2.7e-12 Score=104.15 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=108.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....+...+.+.++..++.++.|+++||+|||+.+..+.+...++.......++.+.+.+..++.|++.+...+...++
T Consensus 253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (406)
T PRK11551 253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL 332 (406)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667888889999999999999999999999999988777777776666667777777777788888877777888999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~ 200 (208)
..|.+|+++|++++|+ ......+|..++|.+.+.+. +|...++......+.+.+.
T Consensus 333 ~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 333 APLFYPTQVRGTGVGA-AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred HHHHcchhhhhhhhhH-HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 56678899999999988875 4445555554444443333
No 96
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.47 E-value=4.4e-13 Score=106.13 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=119.3
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHH
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK---DVVLFSLSRFL 129 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l 129 (208)
..+.+++++ ++.+.+++.++..+...+..++.|.+.||+|.|+...++.++..+-++..+++. +++.+++++++
T Consensus 38 ~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll 114 (417)
T COG2223 38 VFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLL 114 (417)
T ss_pred hhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 445588888 889999999999999999999999999999999999999999999888888764 45699999999
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h---hHHHHHHHHHHHHH-HHHHHh
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D---WQWISVITIFPLIV-GLIVAI 202 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---w~~~~~~~~~~~~~-~~~~~~ 202 (208)
.|++. ..++....++++++|+++++.++|+ .. ..++|..+..+++..+. + |+....+......+ .+..++
T Consensus 115 ~G~~G-asFav~m~~~s~~fP~~~qG~AlGI-~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 115 LGLAG-ASFAVGMPNASFFFPKEKQGLALGI-AG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred Hhccc-ceehcccccccccCChhhhhHHHHH-hc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99984 4568899999999999999999999 56 55566555444444332 4 88877766555544 555566
Q ss_pred ccCCCC
Q psy2964 203 FTPESA 208 (208)
Q Consensus 203 ~~petp 208 (208)
.+.|.|
T Consensus 192 ~~~d~p 197 (417)
T COG2223 192 GMNDVP 197 (417)
T ss_pred HhCCCh
Confidence 555543
No 97
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.47 E-value=2.8e-12 Score=104.71 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL 146 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 146 (208)
...+.+.++..++..++.+++|+++||+|||+.+..+.++.++...+.++.++.+.+...+++.|++.+...+....++.
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 341 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT 341 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888889999999999999999999999999988888888888889988888899999988887788889999
Q ss_pred hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964 147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTP 205 (208)
Q Consensus 147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~p 205 (208)
|.+|++.|+...+..++....+|..++|.+.+++. ||+..|.+.+++.++.. +.++.++
T Consensus 342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999887655345667789999988888875 89999988776665533 3333443
No 98
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.46 E-value=5.8e-12 Score=100.94 Aligned_cols=140 Identities=10% Similarity=0.004 Sum_probs=110.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+..+.++..........++.++.|++.||+|||+.+..+.+...+........++.+.+...+.+.|++.+...+....+
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 312 (375)
T TIGR00899 233 PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLY 312 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556676666666777888999999999999999888877666655555566777777788889999888888888899
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
+.|..|++ |++++++ ++....+|..++|.+.+.+. +|+..+++.++..+++.+....++|
T Consensus 313 ~~~~~~~~-~~~~~~~-~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 313 FQDLMPGR-AGAATTL-YTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHhCcch-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 99998764 5688888 56667789999999988765 7888888888877776666666654
No 99
>PRK12382 putative transporter; Provisional
Probab=99.45 E-value=7.2e-12 Score=101.34 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC 148 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 148 (208)
.++....+.++..+++++.|++.||+|||+.+..+..+..++..+....++.+...+..++.|++.+...+.......|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45556677788889999999999999999999999988888887777778888788888999999888888888889999
Q ss_pred cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964 149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 200 (208)
+|+++|+++.++ ++....+|..++|.+.+.+. +|++.+.+.+++.++..+.
T Consensus 331 ~~~~~~g~~~g~-~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 331 VPSQVRGTALGG-YAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 999999999999 67778889999998888775 8999998887776664443
No 100
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.45 E-value=1.7e-12 Score=103.65 Aligned_cols=132 Identities=18% Similarity=0.118 Sum_probs=107.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHhhhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV--VLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
+....+...+++.++..+++++.|+++||+|||+.+..+..+..++..+....++. ..+....++.|++.+...+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 317 (377)
T TIGR00890 238 SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFP 317 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccH
Confidence 44567778888999999999999999999999999999988888887776666532 2344556777877777777778
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG 197 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 197 (208)
.++.|.+|+++|+++.|+ ......+|..++|.+.+.+. +|++.+.+.+++.+++
T Consensus 318 ~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 318 SLVSDIFGPANSAANYGF-LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHhhhhhhhhHhHH-HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 899999999999999999 67788899999999888765 7888888877665554
No 101
>PRK09952 shikimate transporter; Provisional
Probab=99.44 E-value=1.3e-11 Score=101.45 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh---h-ccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964 71 ITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF---S-KDVVLFSLSRFLTGVGHFNAFIFYYIIVL 146 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 146 (208)
....+..+...++.++.|+++||+|||+.+..+.++..++...... . ++.+.+.+..++.+++.+...+..+++++
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 369 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFT 369 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666788889999999999999988887766554432222 1 23344445556667777777788899999
Q ss_pred hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
|.+|++.|+.+.++.+..+..+|+.++|.+.+++. +|...+.+.++..+++.+..+.++|+
T Consensus 370 e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 370 EMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999998777667788888998888763 47777777777777766666666765
No 102
>TIGR00898 2A0119 cation transport protein.
Probab=99.43 E-value=9.2e-12 Score=103.95 Aligned_cols=137 Identities=20% Similarity=0.161 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964 71 ITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV--VLFSLSRFLTGVGHFNAFIFYYIIVLEC 148 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 148 (208)
....+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +......++.+++.+..++..+.+.+|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566778889999999999999999999999888888777766543 4444555666777777778889999999
Q ss_pred cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
+|++.|+.++|+ .+....+|..++|.+.+... ++...+.+.++..+++.+..+++|||.
T Consensus 439 ~p~~~r~~~~g~-~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGV-CSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhH-HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999 56677899999999888332 455667777777666666667788873
No 103
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.43 E-value=4e-12 Score=102.61 Aligned_cols=147 Identities=10% Similarity=-0.025 Sum_probs=106.8
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch----HHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRI----TAVLGSHVVSFLGVALTPFSKDVVLFSLSR 127 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (208)
++.+.++++. +..+.++..+++.++..++++++|+++||+||| +.+....... ........++++.+++.|
T Consensus 27 l~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~ 101 (382)
T PRK11128 27 WSVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAI 101 (382)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence 4456666776 788999999999999999999999999999994 3332222221 222233457899999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
++.|++.+...+...++..++ .++|+++.+. ......+|..++|.+++++. +||..|++.++..++..+..+..
T Consensus 102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~-~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 178 (382)
T PRK11128 102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGK-VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLR 178 (382)
T ss_pred HHHHHHHcccccHHHHHHHHH--HhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHcc
Confidence 999998888888877777776 3456776666 45566789999999999875 89998887766554444444444
Q ss_pred CC
Q psy2964 205 PE 206 (208)
Q Consensus 205 pe 206 (208)
||
T Consensus 179 ~~ 180 (382)
T PRK11128 179 PT 180 (382)
T ss_pred CC
Confidence 54
No 104
>KOG0569|consensus
Probab=99.43 E-value=7.8e-12 Score=102.40 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=97.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---c-cH--H---HHHHHH--HHHhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---K-DV--V---LFSLSR--FLTGVG 133 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-~~--~---~~~~~~--~l~g~~ 133 (208)
+.....+.+....+...+..+++..+.||+|||+.++.+..++.+..+++... . .. | ..+++. +...++
T Consensus 303 ~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~ 382 (485)
T KOG0569|consen 303 TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFA 382 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 44556777888888899999999999999999999999999999988776553 1 11 1 112333 333344
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQ-WISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~-~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
.|. .|+.+-+.+|++|.+.|+.+++......+.....++-.....-..+. +.|+...++..+ .++.++.+|||.
T Consensus 383 ~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 383 IGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred cCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccC
Confidence 444 48889999999999999999988655444433333322222211121 556666666555 666788899984
No 105
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.41 E-value=9.6e-12 Score=100.87 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC 148 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 148 (208)
.+...++..++..++.+..|+++||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 34555666778888999999999999999999999888887777777777888888889999999999889999999999
Q ss_pred cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
.|++.|++.+++ +.....+|..++|.+++.+. +|++.|++.++..++..+
T Consensus 340 ~~~~~~g~~~~~-~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 392 (408)
T PRK09874 340 SSNQIAGRIFSY-NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV 392 (408)
T ss_pred CCcccceeeehH-HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 999999999998 67778899999999998875 788999888777666444
No 106
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.39 E-value=1.1e-11 Score=100.52 Aligned_cols=144 Identities=15% Similarity=-0.005 Sum_probs=99.7
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhhc-----cHHHHHHHHH
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFSK-----DVVLFSLSRF 128 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~ 128 (208)
+++++ +..+.++..+++.++..+++++.|+++||+|||+.++.+....++..... ...+ ......+.++
T Consensus 31 ~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T TIGR00882 31 DVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL 107 (396)
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34565 67789999999999999999999999999999999988776665543322 1111 2233455677
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHH-HHhccC
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLI-VAIFTP 205 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~-~~~~~p 205 (208)
+.|++.+...+....+..+..++ ++...+. ......+|..++|.+++.+. +|++.|++.++..++..+ .+...|
T Consensus 108 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 184 (396)
T TIGR00882 108 YLGFVFSAGAGAIEAYIEKVSRN--SNFEYGK-ARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKP 184 (396)
T ss_pred HHHHHhccchhhHHHHHHHhhhh--cccccch-hhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 88887777777777777775433 3334444 33455678888888888765 899999888776666443 333345
Q ss_pred C
Q psy2964 206 E 206 (208)
Q Consensus 206 e 206 (208)
|
T Consensus 185 ~ 185 (396)
T TIGR00882 185 K 185 (396)
T ss_pred C
Confidence 4
No 107
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.38 E-value=2.9e-11 Score=98.69 Aligned_cols=142 Identities=17% Similarity=0.130 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....++..+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+...++.++.|++.+...+...++
T Consensus 257 ~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (417)
T PRK10489 257 GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTL 336 (417)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999999999888888888888888877777777887777788888898888777778889
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
+.|..|++.|++++|+ +.....+|..++|.+.+.+. +++..++..++..++ +.+.+...|++
T Consensus 337 ~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 337 LQTQTPDEMLGRINGL-WTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999 56677889999999998886 455556555544333 55555555554
No 108
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.37 E-value=1.8e-11 Score=98.79 Aligned_cols=137 Identities=11% Similarity=-0.048 Sum_probs=103.0
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHH-HHHHHH-HHHhhhccHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHV-VSFLGV-ALTPFSKDVVLFSLSRF 128 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 128 (208)
.++.+.+++++ +..+.++..+++.+...++++++|+++||+|||........ ...+.. .....+++++.+++.|.
T Consensus 26 ~l~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 102 (382)
T TIGR00902 26 FFPAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIG 102 (382)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566667776 78899999999999999999999999999998544322221 111111 23345688999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHH
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFP 193 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~ 193 (208)
+++.+.+...+...++..+. .++|++.++. ......+|..++|.+++.+. |||..|++..+.
T Consensus 103 l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~-~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 103 LFALFFSAGMPIGDALANTW--QKQFGLDYGK-VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHHccchhHHHHHHHHH--HHHcCCCccH-HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 99988877778888887664 4678888888 56677799999999888775 899988776544
No 109
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.37 E-value=5.1e-11 Score=96.19 Aligned_cols=149 Identities=7% Similarity=-0.143 Sum_probs=121.6
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGV 132 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 132 (208)
+.+.++.+. +....+...++..++.+++.++.+++.||+|+|+.+.++.+...+....+++.++.+.++..+.+.|+
T Consensus 229 ~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~ 305 (382)
T TIGR00902 229 AIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCG 305 (382)
T ss_pred HHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 334445555 66778888888888999999999999999999999999999999999889999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhccC
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADW--QWISVITIFPLIVGLIVAIFTP 205 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~p 205 (208)
..+...+....++.+. |++.|+++.++......++|..++|.+++.+.++ ...|.+.+++.+++++......
T Consensus 306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (382)
T TIGR00902 306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFLIPKKL 379 (382)
T ss_pred HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 9999999999844467789999999999998622 1345556666666555544443
No 110
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.35 E-value=5.7e-11 Score=99.27 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=114.3
Q ss_pred cCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhhhhhhHH
Q psy2964 64 DGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGVGHFNAF 138 (208)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~ 138 (208)
++....+++.....+..++.++++|.++||+.||++++.+-++.++......+. .+.+.+++..++.|.+.+...
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 356678888888999999999999999999999999999988877655443332 477888899999999999999
Q ss_pred HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964 139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 201 (208)
|..++++.|+.|+++...++++ .+....++..+||.+++.+. |-.+.|.+.++..++.++..
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al-~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANAL-NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 78888999999999999875 56677777766655544333
No 111
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.35 E-value=1.7e-11 Score=100.83 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=101.9
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----c------cHHHHHHHHHHHhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----K------DVVLFSLSRFLTGVG 133 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~l~g~~ 133 (208)
+....++......++..++.++.|+++||+|||+.+..+.++.+++..+.+.. + +...+....+..+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (481)
T TIGR00879 317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFF 396 (481)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHH
Confidence 34556777788888999999999999999999999999888877776665521 1 222222222222222
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCCC
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPESA 208 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~petp 208 (208)
.....+....++.|.+|++.|++++++ ......+|..++|.+.+.+. +|++.|++.+++.++..+ ..++.||++
T Consensus 397 ~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 397 AMGWGPVPWVIVSEIFPLSLRPKGISI-AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HccccCeehhhhhccCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 222336667788999999999999999 66788889999988877764 688888887777666444 445567653
No 112
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.33 E-value=6.1e-11 Score=93.76 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=115.2
Q ss_pred hhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---hhccHHHHHH
Q psy2964 49 DRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---FSKDVVLFSL 125 (208)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~ 125 (208)
+...+.+.+.|++ +..+.+.++..++.++.+.+++.+++.+|+|+|.-++.++.++++++.+.. ..+++..++.
T Consensus 33 diLip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~ 109 (422)
T COG0738 33 DILIPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109 (422)
T ss_pred hhhHHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3345667777887 788899999999999999999999999999999999999999999998874 5578888889
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 126 SRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 126 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
.-++.|.|.+......+.+++.+.+++.-+..+++ .+....+|..++|.++..+
T Consensus 110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl-~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNL-AQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH-HHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999888889988 6789999999999998765
No 113
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.33 E-value=1.1e-10 Score=94.24 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=104.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....++..+...++..+++++.|++.||+|+|+++..+.....++..... + ........++.|++.....|....+
T Consensus 233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~ 309 (381)
T PRK03633 233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAW 309 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455677888888899999999999999999999999888877777654433 2 2233445667777766777888898
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
+.|..|+++++...+. +...+.+|..++|.+++++. +|++.|.+.+.+.++....++..
T Consensus 310 ~~~~~~~~~~~~~~~~-~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 310 ACEKVEHHELVAMNQA-LLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 9999988887777666 56678899999999999885 78888888777776655555444
No 114
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.33 E-value=4.4e-11 Score=98.62 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=108.6
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCchHHHHHH-HHHHHHHHHHHhhhccHH--------
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVAD----RYGRITAVLGS-HVVSFLGVALTPFSKDVV-------- 121 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-------- 121 (208)
+.++.+. +....+++..+..+...+.+++.|+++| |+|||+.++++ .....++..+++++++..
T Consensus 30 yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~ 106 (477)
T TIGR01301 30 YVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD 106 (477)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence 3445565 5677888888999999999999999999 59999998875 555555656666654432
Q ss_pred ---------HHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh--hhHHhHHHHHHHHHHHHHHHHHHHhhh---------
Q psy2964 122 ---------LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR--TFAMTFPFLIFYTVSEVALPWIAYYLA--------- 181 (208)
Q Consensus 122 ---------~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------- 181 (208)
..+++..+..++.....+...++++|..|+++| +.+.++ .+....+|..+++.+++...
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~-~~~~~~lG~ilg~~~g~~~~~~~~~~~~~ 185 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY-FSFFMAIGNVLGYAAGAYSGLYKIFPFTK 185 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhccccc
Confidence 223333444557777778889999999998876 457766 67778889999988887641
Q ss_pred ---------hhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 182 ---------DWQWISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 182 ---------~w~~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
+.++.|++.++..++ .++..+..+|.|
T Consensus 186 ~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 186 TEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 457788887776666 444556678764
No 115
>KOG0253|consensus
Probab=99.32 E-value=2.2e-12 Score=100.79 Aligned_cols=130 Identities=18% Similarity=0.094 Sum_probs=95.3
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR 154 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r 154 (208)
+..++-..|.++.+++.||+|||+.+..++++.+++.++...+.+.....+.-+..-++.++.+.+.++|..|.+|++.|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 44567788999999999999999999999999999988887776554444444444455566667889999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccC
Q psy2964 155 TFAMTFPFLIFYTVSEVALPWIAYYLA-DWQWISVITIFPLIVGLIVAIFTP 205 (208)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~p 205 (208)
+.++|.+ +....+|++++|+++.... +-..+..+.+.+++++.++..++|
T Consensus 469 atgvGtc-SsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 469 ATGVGTC-SSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred hcchhhh-hhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence 9999995 5678899999999994443 222233334444444444444444
No 116
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.30 E-value=1.4e-10 Score=96.10 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=95.9
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH--HhhhccHHHHHHHHHHHhhhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL--TPFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~ 134 (208)
+++++ +..+.++......++..++.+++|+++||+|||+.+........++... ....++.....+..++.|++.
T Consensus 287 ~~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 363 (467)
T PRK09556 287 QELGF---SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV 363 (467)
T ss_pred HccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34555 4566778888899999999999999999999998876654444333222 223345656667777778654
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHH-HHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYT-VSEVALPWIAYYLA---------------DWQWISVITIFPLIVGL 198 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-~g~~~~~~~~~~~~---------------~w~~~~~~~~~~~~~~~ 198 (208)
............|.+|++.|+++.|+ .+.... .|..++|.+.+.+. +|+..|++..+..+++.
T Consensus 364 ~~~~~~~~~~~~~~~p~~~~g~a~gi-~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~ 442 (467)
T PRK09556 364 FGPQLLIGVAAVGFVPKKAIGVANGI-KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCI 442 (467)
T ss_pred hhHHHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHH
Confidence 33333445677799999999999999 444444 46677776666554 38888887766666544
Q ss_pred HH
Q psy2964 199 IV 200 (208)
Q Consensus 199 ~~ 200 (208)
+.
T Consensus 443 ~~ 444 (467)
T PRK09556 443 CL 444 (467)
T ss_pred HH
Confidence 43
No 117
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.30 E-value=7.9e-11 Score=94.54 Aligned_cols=130 Identities=14% Similarity=0.024 Sum_probs=98.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHH--HHHhh--hccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV--ALTPF--SKDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+....+.......++..++.++.|+++||+|||+.+.....+..+.. ..... .++.+......++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 332 (394)
T TIGR00883 253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGP 332 (394)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhh
Confidence 45567777888889999999999999999999998776554444333 12222 245666667778888888888899
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHH
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPL 194 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~ 194 (208)
...++.|.+|++.|++++++.++....+|..++|.+++.+. + |++..+...+..
T Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 333 MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99999999999999999988556666778889998888775 4 776666554443
No 118
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.29 E-value=1.1e-10 Score=96.74 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--cc-HH-HHHHHHHHHhhhhhh-HHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--KD-VV-LFSLSRFLTGVGHFN-AFIFYY 142 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~l~g~~~~~-~~~~~~ 142 (208)
...+......++..++.++.++++||+|||+.++.+.++.+++.++.... ++ .+ ....+.++.+++.+. ..+..+
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (479)
T PRK10077 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 386 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhH
Confidence 34555566777888999999999999999999999999988887765543 11 11 122233333333332 236678
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL---------ADWQWISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~w~~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
.+++|.+|+++|+.++|+ ......+|..+++.+...+ .+|++.|++.++..++ .++.+++.||+.
T Consensus 387 ~~~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 387 VLLSEIFPNAIRGKALAI-AVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHhHhhCChhHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999 4556666666654333221 1567777776665555 334455678763
No 119
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.29 E-value=8e-11 Score=96.17 Aligned_cols=141 Identities=12% Similarity=-0.006 Sum_probs=88.3
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh---hc-----cHHHHHHHHH
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF---SK-----DVVLFSLSRF 128 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~ 128 (208)
+++++ +..+.++..+++.++..+++++.|+++||+|||++++.+..+.++....... .+ ......+..+
T Consensus 39 ~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (420)
T PRK09528 39 DINGL---SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI 115 (420)
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666 6778999999999999999999999999999999998866655544321111 11 0111122233
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhc
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIF 203 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~ 203 (208)
..|.+.....+....+..+. .++++..++. ......+|..++|.+++.+. +|++.|++.++..++..+..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 116 YLGFGFLAGAGAIEAYIERV--SRRSGFEYGR-ARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HhhhhhccchhhhhhHHHHH--Hhhccccchh-hHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhc
Confidence 33333222223333333222 2345556666 44456778888888888775 8999998877776664444433
No 120
>KOG2504|consensus
Probab=99.29 E-value=2.5e-11 Score=100.94 Aligned_cols=142 Identities=22% Similarity=0.234 Sum_probs=117.0
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHH-HHHHh
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLS-RFLTG 131 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g 131 (208)
..+.++++- +..+.+|+.++......+.+++.+.+.||+|.|.+.+.+.++..++.++..++++.|.+++. -++.|
T Consensus 70 ~~~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G 146 (509)
T KOG2504|consen 70 EELMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGG 146 (509)
T ss_pred HHHHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344455553 55669999999999999999999999999999999999999999999999999999887765 58999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
+|.+..+....+.+...| .|+|+.++|+. ..+.++|.++-|.+...+. |||+.+++.+.+.+...+
T Consensus 147 ~G~~~~~~paiviv~~YF-~kkR~lA~Gia-~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~ 215 (509)
T KOG2504|consen 147 LGLGLIYLPAVVILGTYF-EKKRALATGIA-VSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV 215 (509)
T ss_pred ccchhhhcchhhhhhhHh-HHHHHHHHhhh-hccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999999888888888666 67899999994 5577888877766666654 999998887766655444
No 121
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.29 E-value=2.6e-10 Score=93.54 Aligned_cols=140 Identities=10% Similarity=-0.022 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh--h--hccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP--F--SKDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+..+.+...++..++..+++++.|+++||+|||+.+..+.++..+...... . ..+....+..-.+..++.+...+.
T Consensus 277 s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
T PRK10406 277 HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSI 356 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777788899999999999999988776655433332111 1 122322222222222333344456
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--h-hHHHHHHHHHHHHHHHHHHhcc
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--D-WQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~-w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
.+.+.+|.+|++.|++++|+.++.+..+.....|.+.+.+. + |...+++.++..++..+..+++
T Consensus 357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 357 SGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999776656554445777776664 3 4455555555555544443333
No 122
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.28 E-value=1.2e-10 Score=97.30 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=87.8
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK----DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
+..++..++.++.++++||+|||+.++.+..+..++..+.+... +...+...-+...++.....+..+.+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 34456677888999999999999999888887777765555431 11111111111122222223567788899999
Q ss_pred CchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh-------------hHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 151 PKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD-------------WQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 151 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
++.|++++++. +....++..++|.+.+.+.+ +...+++.+++.++..+..+++|||.
T Consensus 423 ~~~R~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 423 TRYRSTAHGIS-AASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred hhHHHHHHHHH-HHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 99999999994 55666788888877765532 23456666666666555567789984
No 123
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.27 E-value=5.6e-10 Score=92.39 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=120.1
Q ss_pred cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhh--------hccHHHHHHHH
Q psy2964 58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPF--------SKDVVLFSLSR 127 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 127 (208)
++++ +..+...+..+.++..++|++++|++.||+|.| ++++.+.++..+..+...+ .++.+.+.+.-
T Consensus 311 ~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a 387 (477)
T PF11700_consen 311 VLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA 387 (477)
T ss_pred hcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence 4455 455666677778889999999999999999999 8888888887665555444 56778888899
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhc
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIF 203 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~ 203 (208)
++.|++.|..++..-++.+|+.|+++.+..+|+ +.+..-....+||++.+.+. +-|+.+....++.++++++.+.
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgl-y~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGL-YAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 88888899999999988886 4677777777777777766666
Q ss_pred cCC
Q psy2964 204 TPE 206 (208)
Q Consensus 204 ~pe 206 (208)
++.
T Consensus 467 v~~ 469 (477)
T PF11700_consen 467 VDV 469 (477)
T ss_pred ccc
Confidence 553
No 124
>PRK03699 putative transporter; Provisional
Probab=99.26 E-value=2.4e-10 Score=92.65 Aligned_cols=142 Identities=9% Similarity=-0.007 Sum_probs=108.0
Q ss_pred ccee-ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 53 RRRR-RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 53 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
+.+. +++++ +..+.+...+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++.|
T Consensus 229 p~~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 229 PEYAQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444 34455 5667888888999999999999999999999999998888777776666666677766667778888
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
++.+...+...++..|..|. .++...+. ......+|..++|.+.+.+. +++..+++.+++.+++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTKV-ASPKLVNF-ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHHHHHccC-CCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 88887778888888887764 45667777 44566789999999988875 788877766655555433
No 125
>PRK03545 putative arabinose transporter; Provisional
Probab=99.26 E-value=5.7e-10 Score=90.29 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=100.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHH-HHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVA-LTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+....++..+...++..+++++.|+++||+|||.... +..+..++.. +....++.+.+.++.++.|++.+...+....
T Consensus 239 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 317 (390)
T PRK03545 239 SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV 317 (390)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence 5567788888889999999999999999999987544 4444444433 3344567777777888888887766677778
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
.+.+..| +.|++++++ ++....+|..+||.+++.+. +++..+++.+++.+++++
T Consensus 318 ~~~~~~~-~~~~~~~g~-~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 318 KVLKLAP-DATDVAMAL-FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHhCC-CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 8888876 688999998 56677889999999988876 788888887776666443
No 126
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.25 E-value=8.2e-11 Score=96.36 Aligned_cols=148 Identities=17% Similarity=0.123 Sum_probs=104.3
Q ss_pred eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCch-HHHHHHHHHHHHHHHHHhhhcc------HHHHH
Q psy2964 56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR----YGRI-TAVLGSHVVSFLGVALTPFSKD------VVLFS 124 (208)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~ 124 (208)
.+++++ +....+.+.++..+..++..++.|+++|| +||| +.++.+....+++.+++...++ ...+.
T Consensus 27 ~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (437)
T TIGR00792 27 TDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY 103 (437)
T ss_pred HHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 345666 67789999999999999999999999997 6874 4666777777777776665543 34455
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHH
Q psy2964 125 LSRFLTGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----------ADWQWISVITIFP 193 (208)
Q Consensus 125 ~~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~w~~~~~~~~~~ 193 (208)
+.+++.+.+.+.......++..|.. ++++|++..++ ...+..+|..+++.+...+ .+|++.+.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~-~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTF-RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 6667777777776667778888887 57889998877 5555556655443332211 1799988888777
Q ss_pred HHHH-HHHHhccCCC
Q psy2964 194 LIVG-LIVAIFTPES 207 (208)
Q Consensus 194 ~~~~-~~~~~~~pet 207 (208)
.++. .+..+..||+
T Consensus 183 ~~~~~~~~~~~~~e~ 197 (437)
T TIGR00792 183 GVVSLIICFFGTKER 197 (437)
T ss_pred HHHHHHHHHcCCEec
Confidence 6664 3445556664
No 127
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.25 E-value=2.7e-10 Score=93.15 Aligned_cols=143 Identities=11% Similarity=0.024 Sum_probs=97.7
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 133 (208)
+.+++++ +..+.+++.+++.++..++++++|.++||+|| |+++..+.+...+...+..+.++++.+.+.+++.|++
T Consensus 29 l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (418)
T TIGR00889 29 MSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLA 105 (418)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3345666 67889999999999999999999999999965 7788888888878877888888899999999998887
Q ss_pred hhhHHHHHHHHHH--------hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy2964 134 HFNAFIFYYIIVL--------ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAI 202 (208)
Q Consensus 134 ~~~~~~~~~~~~~--------e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 202 (208)
.+...+...+... |......|.+..|. +|..++|.+++.+. .|. ++++.++..++..+..+
T Consensus 106 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~-------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~ 177 (418)
T TIGR00889 106 YMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT-------IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL 177 (418)
T ss_pred HccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh-------HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh
Confidence 6655555444432 22222234444332 45556666666553 233 34455554545444556
Q ss_pred ccCCCC
Q psy2964 203 FTPESA 208 (208)
Q Consensus 203 ~~petp 208 (208)
.+||+|
T Consensus 178 ~~~e~~ 183 (418)
T TIGR00889 178 TLPDIP 183 (418)
T ss_pred cCCCCC
Confidence 777764
No 128
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.24 E-value=5.3e-10 Score=90.67 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=106.1
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHh
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTG 131 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g 131 (208)
+.+..++++ +....+...+++.++..++.++.+++.||+|||+.+..+..+..++..+....+ +.... ..++.|
T Consensus 229 p~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 229 PAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 444445554 566778888999999999999999999999999999888877777665544333 22222 234567
Q ss_pred hhhhhHHHHHHHHHHhhcC-CchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH-HHHHhccC
Q psy2964 132 VGHFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVG-LIVAIFTP 205 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~-~~~~~~~p 205 (208)
++.+...+.......+..+ +++|++..++ .+....++..++|.+.+++. +|...+++..+..++. .....+.|
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAF-MQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777777777777777774 6789999998 45566677888888888876 3566676665555553 33456678
Q ss_pred CCC
Q psy2964 206 ESA 208 (208)
Q Consensus 206 etp 208 (208)
|++
T Consensus 383 ~~~ 385 (393)
T PRK09705 383 ARF 385 (393)
T ss_pred ccc
Confidence 874
No 129
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.24 E-value=2.9e-10 Score=91.05 Aligned_cols=134 Identities=10% Similarity=-0.029 Sum_probs=92.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchH--HHH------HHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRIT--AVL------GSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFN 136 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 136 (208)
+....++..++..++..++.++.|+++||+|||+ ... .+.+...+........++.+.......+.+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (399)
T TIGR00893 249 SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG- 327 (399)
T ss_pred cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-
Confidence 4556778888889999999999999999999996 111 1111111111111112233433333444444444
Q ss_pred HHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHHHHH
Q psy2964 137 AFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPLIVGLIV 200 (208)
Q Consensus 137 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~ 200 (208)
..+....++.|..|++.|++++++ .+....+|..++|.+.+.+. + |++.+++.++..+++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGL-INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHH-HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999 66677899999999888875 5 888888777766664443
No 130
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.24 E-value=3.1e-10 Score=90.28 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc-HHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD-VVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+..+.+.......++..++.++.+++.||+|||+.+..+..+.+++.......++ .+.+.+..++.|++.+...+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (365)
T TIGR00900 245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT 324 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888899999999999999999999999999888777777777777664 777888899999999998899999
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.|..|+++|++..++ .+....++..++|.+.+.+.
T Consensus 325 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 325 LLQRRVPAELLGRVFGA-QFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 67778889999998888764
No 131
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.24 E-value=7.1e-10 Score=90.17 Aligned_cols=143 Identities=14% Similarity=0.068 Sum_probs=100.6
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHH-HHHHHHHHHHHHHhh-----hccHHHHHHH
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVL-GSHVVSFLGVALTPF-----SKDVVLFSLS 126 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~ 126 (208)
+.+.++.++ +..+.+...+...++..++.+..|+++||+|||+.+. .+.+...++...... .++.+...+.
T Consensus 246 p~~~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 246 PMFVAELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 444455555 4556677778888999999999999999999988764 333333333222221 2456666677
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964 127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 201 (208)
.++.|++.+...+ ......|.. +++|++++|+ .+....+|..++|.+.+.+. ||...+++.+++.++..+..
T Consensus 323 ~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~-~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 323 AIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSV-LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 8888887776544 455667765 5689999999 67788899999998887775 77888888777766644433
No 132
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.21 E-value=3.3e-10 Score=91.49 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHH-HHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVA-LTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+..+.++..+...++..++.++.+++.||+|||+.+..+.+...+... .....++.+.+.+..++.+++.+...+..+.
T Consensus 272 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (405)
T TIGR00891 272 SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPK 351 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHH
Confidence 455678888889999999999999999999999998888776533332 2333455566666667777666666677888
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.|.+|+++|++++|+ ......+|..++|.+.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~g~-~~~~~~~g~~~g~~~~g~l~ 388 (405)
T TIGR00891 352 HLGEYFPTDQRAAGLGF-TYQLGNLGGALAPIIGALLA 388 (405)
T ss_pred HHhhhCCcchhHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 55577788999999988876
No 133
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.20 E-value=4.1e-10 Score=93.82 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=92.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--KDVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
+..+.++..+.+.++..++.++.|+++||+|||+++..+..+..+..++.... .+.+......++.++......+..+
T Consensus 309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (496)
T PRK03893 309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLP 388 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhH
Confidence 55678888999999999999999999999999999888877666655443332 2333333444444333333346677
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHH
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITI 191 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~ 191 (208)
.++.|.+|+++|++++++ ......+|..++|.+.+.+. +|+..+...+
T Consensus 389 ~~~~~~~~~~~~g~~~~~-~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 389 KLIGGYFDTEQRAAGLGF-TYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HHHHhhCCHHHhhcccch-hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 889999999999999999 55566789999999988876 6666665443
No 134
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.19 E-value=1.3e-09 Score=88.41 Aligned_cols=131 Identities=10% Similarity=0.035 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL 146 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 146 (208)
...+...++..+...++.+..+++.||+|||+.+.++.++.++...+....++.+.+....++.|++.+........+..
T Consensus 254 ~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 254 RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777778888889999999999999999999999888887777777888888888899999988777667777888
Q ss_pred hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q psy2964 147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG 197 (208)
Q Consensus 147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 197 (208)
+..+++.+++..+..++....+|..+++.+++++. ||+..|.+.+++.++.
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888887666456678889999998888875 7888888877766553
No 135
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.19 E-value=2.9e-10 Score=94.01 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=104.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHHHHH--HHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAVLGS--HVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+....++..++..++..+++++.|+++||. ++|+...++ .+..+++.++....++++.+.+.+++.|++.+...+.
T Consensus 274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL 353 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence 456778888889999999999999999973 344433333 3333344445556778888888999999999888889
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL 198 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 198 (208)
...++.|.+|++++++.+++ ++....+|..++|.+++.+. +|++.|++.++..+++.
T Consensus 354 ~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 354 LFEVLMDLVGAQRFSSAVGL-VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHhhHHHHhhHHhH-HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 99999999999999999999 67788899999999998764 58888887766555533
No 136
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.18 E-value=2.2e-09 Score=86.71 Aligned_cols=139 Identities=8% Similarity=-0.033 Sum_probs=108.4
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFN 136 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 136 (208)
++.++ +....+...++..++..+..++.+++.||+|+|+.+..+.+..++..+.....++.+.+++..++.|++.+.
T Consensus 233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV 309 (382)
T ss_pred HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44454 455678888888888899999999999999999999999999888887788888888888899999999988
Q ss_pred HHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964 137 AFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 137 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 200 (208)
..+....++.+. +++++++..+.........|..++|.+++.+. ++ ..++..+++.+++++.
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 888888888887 55567888887444566778889999999886 44 3455555555544433
No 137
>PRK15075 citrate-proton symporter; Provisional
Probab=99.18 E-value=2e-09 Score=88.45 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=82.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH-H-h--hhccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL-T-P--FSKDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+..+.++....+.++..++.++.|+++||+|||++++.+.++..+.... . . ..++.........+.+++.+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 351 (434)
T PRK15075 272 SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGA 351 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhh
Confidence 3445677777888889999999999999999999988765554332211 1 1 1233333444455556666666667
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
.+.++.|.+|++.|+.++++.++.+..++..++|.+.+++.
T Consensus 352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 77889999999999999998656555555667887777664
No 138
>TIGR00895 2A0115 benzoate transport.
Probab=99.17 E-value=6.1e-10 Score=89.60 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....+...++..++..++.++.++++||+|||+.+....+.......+....++.+...+..++.|++.+...+...++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (398)
T TIGR00895 283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYAL 362 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888999999999999999999999955444443333333333335666777788889999999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
+.|.+|+++|++++|+ ......+|..++|.+.+.+
T Consensus 363 ~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 363 MALFYPTAIRATGVGW-AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999 5667789999999888764
No 139
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.16 E-value=2.6e-09 Score=89.41 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=113.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....|++.+.+.+|.++|+++.+++.+|+++++.+..+.+..+++.+..++.++.+...+..++.|++.........+.
T Consensus 252 ~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~ 331 (524)
T PF05977_consen 252 GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTL 331 (524)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV 196 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 196 (208)
+.+..|++.||+.+++ +......+..+|..+.+.+. |-+..+.+.++..++
T Consensus 332 ~Q~~~P~~~~GRv~si-~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 332 VQLSVPDWVRGRVFSI-YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL 385 (524)
T ss_pred HHHhCCHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999999999 66677777788888888776 555566655554444
No 140
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.15 E-value=2.8e-09 Score=88.94 Aligned_cols=139 Identities=9% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCchHHHHHH-HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhh-ccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRS-IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFS-KDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+..+.++... ...++.+++.++.|+++||+|+|+.+..+.++.++..... ... ++.+.+....++..++.+...+
T Consensus 256 s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~ 335 (491)
T PRK11010 256 DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTA 335 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 5566777764 5567899999999999999999988777666555443322 222 3444445556666666666667
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
...++..+..+++.+++..++ .+....+|..+++.+.+.+. ||+..|.+..++.+++++.....
T Consensus 336 ~~~a~~~~l~~~~~~~t~~gl-~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 336 AFVALLMTLCNKSFSATQFAL-LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHcCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999998 66667788776666666654 78888888777777755544433
No 141
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.15 E-value=1.8e-09 Score=88.16 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh--hhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG--VGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~~~~~~~~~~~ 142 (208)
+....+...++..++..++.++.|++.||+|||+.+..+.++..+........++.......-.+.| ++.....+..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (426)
T PRK12307 264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVP 343 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHH
Confidence 4455677778888999999999999999999999998888776665544433322111122222222 22222335566
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
.++.|.+|++.|++++|+. .....+|..++|.+.+++.
T Consensus 344 ~~~~~~~p~~~~g~~~g~~-~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 344 KFLYDYFPLEVRGLGTGLI-YNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHHHhCcHHHHhhhhhHH-HHHHhHHHHHHHHHHHHHH
Confidence 7889999999999999994 4466678889999888876
No 142
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.13 E-value=1.7e-09 Score=86.21 Aligned_cols=145 Identities=13% Similarity=0.121 Sum_probs=123.4
Q ss_pred cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964 58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 137 (208)
++++ ++.+...+....++..++|++++|++.||+|.|+++..+.++..+.++...+......+.++-.+.|...|..
T Consensus 282 ~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 282 DLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence 5666 5667777778888899999999999999999999999999999998887777777777778889999999999
Q ss_pred HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
++..-+|..+..|+++-++.+|+ ++.....+..++|++.+.+. +-|.-+...+++..++++....+|+
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFgl-yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGL-YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHHHHHHHHHhCCCccccceeeh-hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 99999999999999999999999 88898999999999888875 5566666666666667776666653
No 143
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.11 E-value=1.8e-09 Score=98.32 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=103.9
Q ss_pred CCc-hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSS-NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+.. ..+++.+...++.+++.++.++++||+++|+.+.++.++.+++.++.....+.+.++++.++.|++.+...+...+
T Consensus 266 s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 345 (1146)
T PRK08633 266 DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNA 345 (1146)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445 6788888999999999999999999999999999988888888887777778888888889999999988888999
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIF 192 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~ 192 (208)
++.+..|++.|++++|+ .+....+|..+++.+++.+. ++...+++.+.
T Consensus 346 ~~~~~~p~~~rg~~~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 346 LIQFRAPEKELGKVLAA-NNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHhhcCCccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999998 66667777777776666553 33344444433
No 144
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.10 E-value=1.1e-08 Score=83.95 Aligned_cols=116 Identities=14% Similarity=0.238 Sum_probs=93.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+....++...+..++.+++.+++++++||+|+|+.+..+.++.+++.....+. ++.+.+.+..++.|++.+...+..++
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777889999999999999999999999999988888877666554 35566667778888888888888999
Q ss_pred HHHhhcC-------CchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 144 IVLECVG-------PKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 144 ~~~e~~~-------~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
+++|..+ ++.++...|+ .+....+|..+++.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSV-RTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9998865 5567888888 67788888888888877663
No 145
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.08 E-value=1.2e-08 Score=82.69 Aligned_cols=141 Identities=11% Similarity=-0.025 Sum_probs=98.9
Q ss_pred eeecccccccCCchHHHHHHHHH-HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh------hccHHHHHHHH
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFF-LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF------SKDVVLFSLSR 127 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 127 (208)
+..+.++ +..+.++...+.. ....++.++.|++.||+|+|+.+..+.++.......... .++........
T Consensus 234 ~l~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 234 YLVDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred HHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 3344555 5566777766665 466778899999999999999998877665333222211 12333344445
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCC-chhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGP-KWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
.+.+++.+...+.......+..++ +.+++.+++ .+....+|..++|.+++.+. |++..|...+++.+++.+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTA-VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 556666777777778887777765 889999999 67788999999999998876 677777777666655443
No 146
>KOG2325|consensus
Probab=99.08 E-value=1.6e-09 Score=88.61 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=94.2
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhh----c-cHHHHHHHHHHHhhhhhhHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFS----K-DVVLFSLSRFLTGVGHFNAF 138 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~g~~~~~~~ 138 (208)
+...-|++.++..++.+++++.+|+.+.|.|. |+.++.|.++..+++++.... + ..+.++++|++.|+|.+..
T Consensus 69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~- 147 (488)
T KOG2325|consen 69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF- 147 (488)
T ss_pred CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-
Confidence 45678999999999999999999999999996 778899999999999887332 3 5788899999999997776
Q ss_pred HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
...-.|+++-...+.|.++++. ...+..+|..+||.+...+
T Consensus 148 a~lR~Y~a~~s~~~dR~rA~a~-~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 148 AVLRAYIADASTVEDRPRAFAA-TSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHhccCccchHHHHHH-hhhHHHHHHHHhHHHHHHH
Confidence 6778999998888888888877 4556677777777766655
No 147
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.07 E-value=1.1e-08 Score=80.14 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=124.6
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.+++++ +....+.++++..+...+.+++..++..|+|.++.+..++++.+++..+=... +.+.++.+..+.|
T Consensus 35 L~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G 110 (395)
T COG2807 35 LDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG 110 (395)
T ss_pred HHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 5677788887 78889999999999999999999999999999999999999999998876666 7788899999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHh
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAI 202 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 202 (208)
.+.+......+.++-+-+|+| -+..+++ |+...++|..+++.+...+. +||....+-+++++++++.|.
T Consensus 111 ~gIav~nVLLPslIK~~Fpk~-~~~mtgl-Ys~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 111 AGIAVINVLLPSLIKRDFPKR-VGLMTGL-YSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred hhHHHHHHhhhHHHHhhcccc-hhhHHhH-HHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999755 6788888 77777787777766555543 799999988888888777665
No 148
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.07 E-value=1e-08 Score=84.68 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=84.2
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHH-HHHHHHHHHHHHHHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAV-LGSHVVSFLGVALTPF--SKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....++...++.++..++.+++|+++||+ |||... +....+..++...... ..+.+...+..++.|........
T Consensus 287 s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 366 (452)
T PRK11273 287 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVM 366 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHH
Confidence 345567777788889999999999999999 555432 2222222222222222 23444444445555554333233
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHH-HHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEV-ALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~-~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
....+..|.+|++.|+++.|+ .+....+|.. .+|.+.+.+. +|+..|++.+...+++.+
T Consensus 367 ~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~ 429 (452)
T PRK11273 367 LIGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 429 (452)
T ss_pred HHHHHHHHHcChhhhhhHHHH-HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 445667899999999999999 4545555544 4787777665 788888877666555433
No 149
>PRK10504 putative transporter; Provisional
Probab=99.06 E-value=1.8e-08 Score=83.49 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=93.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
+....++......++..++.++.+++.||+|||+++..+.++..+...+.... ++.+.+....++.|++.+...+..
T Consensus 295 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (471)
T PRK10504 295 SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSM 374 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777778888888999999999999999998888777776655543 333334455677788888888888
Q ss_pred HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
..+..+..|++.|+.+.++ .+....+|..+++.+.+.+.
T Consensus 375 ~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 375 NTLTLKDLPDNLASSGNSL-LSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHcCCHHhccchHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 78888899999988887764
No 150
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.05 E-value=1.2e-08 Score=83.89 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--C-chHHHHHHHHHHHHHHHHHh--hhccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--G-RITAVLGSHVVSFLGVALTP--FSKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G-rr~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....+...+.+.++..++.++.|+++||+ + ||.......+...+...... ...+........+..|++......
T Consensus 277 s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 356 (434)
T PRK11663 277 DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQM 356 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHH
Confidence 455677888889999999999999999999 3 33332222222221111111 122333333334444543322223
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL 198 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 198 (208)
.......|.+|++.|++++|+ .+....+|..++|.+.+.+. +|+..|++.+++.++..
T Consensus 357 ~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~ 417 (434)
T PRK11663 357 LIGMAAAECSHKEAAGAATGF-VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISA 417 (434)
T ss_pred HHHHHHHhcccHhhHHhHHHH-HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 445677899999999999999 66778889999988887765 78888888777766533
No 151
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.05 E-value=4.6e-09 Score=87.15 Aligned_cols=147 Identities=12% Similarity=0.025 Sum_probs=102.9
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-----chHHHHHHHHHHH-HHHHHHhhhccHHHHH-HHH
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-----RITAVLGSHVVSF-LGVALTPFSKDVVLFS-LSR 127 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ 127 (208)
+.+++++ +..+.+...+...+...+-.+ +|+++||++ ||+.++++.++.. +.....+..++..... +..
T Consensus 52 l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 127 (468)
T TIGR00788 52 LTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI 127 (468)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 4445676 667777778888888888555 999999998 7887777776653 3333333334433333 478
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHH---HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIF---YTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~---~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 201 (208)
++.+++.+......-.+..|..+ +++....+. .+.. ..+|..+++.+++.+. +|+..|++.++..++..+..
T Consensus 128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~-~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~ 205 (468)
T TIGR00788 128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSL-VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS 205 (468)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCe-eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998 555443222 2222 3468888888888765 79999988877766665556
Q ss_pred hccCCC
Q psy2964 202 IFTPES 207 (208)
Q Consensus 202 ~~~pet 207 (208)
+++||.
T Consensus 206 ~~~~E~ 211 (468)
T TIGR00788 206 NLSKER 211 (468)
T ss_pred Hhcccc
Confidence 677774
No 152
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.04 E-value=1.7e-08 Score=81.54 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=115.3
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV 145 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 145 (208)
+...|.+.++..+.-++.-.+..++.+|+|.|+.++++..++.+=...++++++++.+.+.+.+.|+-.+.......-|+
T Consensus 258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI 337 (412)
T PF01306_consen 258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI 337 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccC
Q psy2964 146 LECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTP 205 (208)
Q Consensus 146 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~p 205 (208)
++.+|+|..++...+..+....+|..+.+.+++.+. |.+..|++.+.+.++ .++..+.++
T Consensus 338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 999999999888888777888888888877777776 777788877766655 444455553
No 153
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.02 E-value=2.7e-08 Score=79.91 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=86.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
++...+.......++..++.++.|++.||+|||+.+..+..+..++..+.... ++...+....++.|++.+...+
T Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (385)
T TIGR00710 240 SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISS 319 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999988887777766555443 2334445566788888888888
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA 177 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~ 177 (208)
....+..|..| ++|+++.++.....+..|...+|.++
T Consensus 320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888886 67899998855555566777777766
No 154
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.98 E-value=6.1e-09 Score=86.60 Aligned_cols=138 Identities=10% Similarity=-0.123 Sum_probs=89.9
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch-------HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRI-------TAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 137 (208)
+....+...+++.++..++.+++|+++||+||| ..+....++.++..++....++.+...+..++.+++.+..
T Consensus 286 s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 365 (476)
T PLN00028 286 SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAA 365 (476)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 455678888889999999999999999999876 2333333333333344444555555555555566655555
Q ss_pred HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964 138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIFT 204 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~ 204 (208)
.+..+.+..+.. ++.|+...|+ ...+..+|..++|.+...-. +|+..|++.+++.+++.++.++.
T Consensus 366 ~~~~~~~~~~~~-~~~~g~~~g~-~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 366 CGATFGIVPFVS-RRSLGVISGL-TGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhcccCcccC-hhhchhhhhh-hhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 555666667765 4789999988 45555667777776544222 58888888877766655544433
No 155
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.98 E-value=1.5e-08 Score=84.08 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh--h--ccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF--S--KDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+..+.++......++..++.++.|++.||+|||+.+..+..+.+++..+... . .+.+.+....++.|++.+...+.
T Consensus 289 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 368 (485)
T TIGR00711 289 TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMP 368 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999999999999999999888888776652 1 34566667788899998888777
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
......+..|+++|+.+.++ .+....+|..+++.+.+.+.
T Consensus 369 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 369 LTTIALSGLPPHKIARGSSL-SNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred HHHHHHhcCCHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999999999 67788899988888777664
No 156
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.97 E-value=2.9e-08 Score=79.93 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=90.1
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch---HHHHH-HHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRI---TAVLG-SHVVSFLGVALTPFSKDVVLFSLSR 127 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (208)
.+++.++.++ +. ..+....+..+...++ .++++||..|| +.... ..++.++...+.+...+.......-
T Consensus 215 lp~~L~~~g~---s~-~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (368)
T TIGR00903 215 LEAALRPAGL---ED-IAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI 287 (368)
T ss_pred HHHHHHHCCC---Ch-HHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 4555555443 22 2444444444444444 46777776543 33332 3333344333444444444444455
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
.+.+++.....+..+++.+|.+|++.|+++.|+ .+....++...+|.+.+.+. +-+..|.+.+++.+++.+....+++
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA-IGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcchhhcCcccch-hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666776767777788999999999999999999 45566677877777776554 6667777777776665554444465
Q ss_pred C
Q psy2964 207 S 207 (208)
Q Consensus 207 t 207 (208)
.
T Consensus 367 ~ 367 (368)
T TIGR00903 367 D 367 (368)
T ss_pred C
Confidence 4
No 157
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.96 E-value=1.5e-08 Score=83.40 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHH---HHHHHHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSF---LGVALTPF--SKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....++...++.++..++.+..|+++||+|+++....+..... ++...... ..+.+......+..|++......
T Consensus 285 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 364 (438)
T TIGR00712 285 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVM 364 (438)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHH
Confidence 45567777888889999999999999999965432222222211 11111111 12333333344445543322222
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHH-HHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVS-EVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g-~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
.......|.+|++.|++++|+ .+.....| ..++|.+.+.+. +|...+++.+...++ ..+.++.+||.
T Consensus 365 ~~~~~~~~~~~~~~~g~~~g~-~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 365 LIGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHhcChhheeeehhh-hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334567899999999999999 44444444 567888877765 678887776555544 44445556664
No 158
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.96 E-value=1.1e-08 Score=83.47 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=83.1
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHH-HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITA-VLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
....+.......++..++.+..|+++||+|||+. +....+...++..+....++......+-.+.+++.....+..+..
T Consensus 278 ~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (412)
T TIGR02332 278 NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTT 357 (412)
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence 3466777888999999999999999999997774 344443433333222222232222222222233332333445566
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPL 194 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~ 194 (208)
..|.+|+++|+.++|+ .+....+|..++|.+.+.+. +|++.+++.++..
T Consensus 358 ~~~~~~~~~~~~a~g~-~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 358 PDQSISLQARAIAIAV-INATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred cccccchHHHHHHHHH-HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 6788999999999999 56677789999998877764 5888777665543
No 159
>PRK10054 putative transporter; Provisional
Probab=98.95 E-value=2.7e-08 Score=80.85 Aligned_cols=138 Identities=9% Similarity=0.024 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSRFLTGVGHFNAFIFYYIIVL 146 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 146 (208)
..+.......+.....+++.|++.||+++|+.+..+..+..++....... ++.+.+.+...+.|++.+...|....++.
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 324 (395)
T PRK10054 245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLID 324 (395)
T ss_pred HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44556666666666777888999999999999999988888777666654 56666777888999998887888889999
Q ss_pred hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964 147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES 207 (208)
Q Consensus 147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet 207 (208)
+..|++.|++..+. .+ ...+|..++|.+++.+. +....|++.+....+..+ ...-+.|-
T Consensus 325 ~~~p~~~~~~~~~~-~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (395)
T PRK10054 325 HIAPPGMKASYFSA-QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRAR 387 (395)
T ss_pred HhCCcccceehHhH-HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999876 44 44578999999998886 444555555444444333 23334443
No 160
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.95 E-value=5.2e-08 Score=78.85 Aligned_cols=148 Identities=9% Similarity=-0.075 Sum_probs=95.3
Q ss_pred ccceeecccccccCCchHHHH--HHHHHHHHHhHHHHH-HHhhhhhCchHHHHHHHHHHHH-HHHHHh-h--hcc-HHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAIT--RSIFFLGSLLGGFIL-SWVADRYGRITAVLGSHVVSFL-GVALTP-F--SKD-VVLF 123 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~-~~~~~~-~--~~~-~~~~ 123 (208)
.+.+.++.++ +..+.+.. ..+..+...+.+++. ++..||+|||+..++...+... ...... . ..+ ...+
T Consensus 24 lp~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (390)
T TIGR02718 24 LPTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA 100 (390)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 4555566665 66778876 356677777777777 4478999999997666533222 222222 1 222 2233
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964 124 SLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 124 ~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 200 (208)
+...++.++..+...+....+..|..++++++...+. ...+..+|..+++...+++. +||..|++.++..++..+.
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~-~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAV-QIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3444555566666667777788888888888877766 56666778888876665543 8999999888776654443
Q ss_pred Hhc
Q psy2964 201 AIF 203 (208)
Q Consensus 201 ~~~ 203 (208)
.++
T Consensus 180 ~~~ 182 (390)
T TIGR02718 180 VLW 182 (390)
T ss_pred HHH
Confidence 333
No 161
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.95 E-value=1.3e-07 Score=76.83 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHH----HHHHHhhhhhhHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSL----SRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~g~~~~~~~~~~~ 142 (208)
..+...++..++=++.-...+++..|+|.|+++.++.+..++=..+++.. ++.+.... ...+.|+..+.......
T Consensus 244 ~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 244 TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44555556566667777889999999999999999999999988887776 45444333 34569999999999999
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
.|+.+..|++.|+++.++......++|..+|..++|++. .|...+.+.++..++ ..+.+++.+|+
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999666778899999999999885 233444455544444 33334444443
No 162
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.94 E-value=1.6e-08 Score=80.68 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=82.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHH-HHHHHHH-HHHHHHHHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGR-ITA-VLGSHVV-SFLGVALTPF--SKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~-l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+..+.+...+.+.++..++.++.+++.||+++ |+. +...... ..++...... ..+........++.|+......+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (379)
T TIGR00881 250 SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQM 329 (379)
T ss_pred CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhH
Confidence 45667888888999999999999999998643 332 2221111 1122222222 23444455566677765555556
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQW 185 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~ 185 (208)
....+..|..|++.|+++.++ .+....+|..++|.+.+.+. ||++
T Consensus 330 ~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 330 LIGVIASELAPKKAAGTAAGF-VGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHHHHHhcCcchhHHHHHH-HHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 667889999999999999999 67778889889988888775 5554
No 163
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.94 E-value=8.7e-08 Score=77.83 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=97.1
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 134 (208)
+.+++++ +....+.....+.++..++.++.+++.||.+++..+....+.......+....++.+.+....++.|++.
T Consensus 243 ~~~~~g~---s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 243 YMNLAGF---GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344555 4556788888889999999999999999965544444333333333444445566777777888899998
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV 196 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 196 (208)
+...+...+++.+..| +++++..+. ......+|..+||.+++.+. |++..++..++..++
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSI-QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 8888888888998887 445566666 45577789999999999886 666666666554433
No 164
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.94 E-value=8e-08 Score=78.17 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=88.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+..+.++......++..++.++.++++||+|+|+.+..+.++..++..+.... ++.+.+....++.|++.+...+
T Consensus 249 ~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 328 (406)
T PRK15402 249 SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANA 328 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666777888999999999999999999998888777766655442 3456666778888888887766
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
......... ++++|++..+. .+....++..+++.+.+.+.
T Consensus 329 ~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 329 GLYRLTLFS-SDVSKGTVSAA-MGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred hHHHHHhhh-ccccccHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 666655444 45889999998 67778888889988888875
No 165
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.93 E-value=1.1e-08 Score=81.59 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=78.3
Q ss_pred CCchHHHHHHHHH-HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----------ccHHHHHHHHHHHhh
Q psy2964 65 GSSNLAITRSIFF-LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----------KDVVLFSLSRFLTGV 132 (208)
Q Consensus 65 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~ 132 (208)
+..+.+....+.. ++..++.+++|++.||+|||+.+..+.++.++...+.... ++.+.+..+.++.++
T Consensus 242 ~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (356)
T TIGR00901 242 SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV 321 (356)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 4555666665554 5778999999999999999999998888887766654442 345667777888899
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhH
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTF 160 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~ 160 (208)
+.+...+...+++.|.+|+++|++.+++
T Consensus 322 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 349 (356)
T TIGR00901 322 TGGLGTVAFVAFLSKLSNPKFGATQMAL 349 (356)
T ss_pred HhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 9999999999999999999999999998
No 166
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.92 E-value=2.7e-08 Score=83.19 Aligned_cols=115 Identities=14% Similarity=0.004 Sum_probs=95.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
+..+.+.....+.++..++.++.|++.||+|+|+.+..+.++..++..+.... ++.+......++.|++.+...+..
T Consensus 293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~ 372 (495)
T PRK14995 293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS 372 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence 55677888888889999999999999999999999998888877776554432 355556677889999999988888
Q ss_pred HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
...+.+..|+++++.+.++ ++....+|..+|+.+.+.+
T Consensus 373 ~~~~~~~~~~~~~g~~~~~-~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 373 TSAIMAAAPPEKAAAAGAI-ETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHhcCCHHhcchHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988 7778888888887776665
No 167
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.92 E-value=9.7e-08 Score=77.68 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=84.3
Q ss_pred CCchHHHHHHHHH-HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhh-ccHHHHHHHHH----HHhhhhh
Q psy2964 65 GSSNLAITRSIFF-LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFS-KDVVLFSLSRF----LTGVGHF 135 (208)
Q Consensus 65 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----l~g~~~~ 135 (208)
+....++...... ++..++.++.+++.||+|||+.+..+..+..+..... +.. ++.+.+....+ ..|++.+
T Consensus 243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (402)
T PRK11902 243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTA 322 (402)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665544 4678999999999999999998887777665554332 333 35555554443 4445555
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAI 202 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 202 (208)
...+....++.+.+|.+.++ + .+....++...++.+++.+. ||+..|.+.+++.+++++...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 323 AFVALLMALCNRSFSATQYA----L-LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHhcCCCCcHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777765554 3 23333455554444555554 899989888777766555443
No 168
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.92 E-value=1.2e-07 Score=74.60 Aligned_cols=149 Identities=21% Similarity=0.182 Sum_probs=97.5
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 134 (208)
+.+++++ +..+++.+.....+..++...+.|.++||+|||+..+..+++..++++ +-..++++.++++|++.|++.
T Consensus 60 LY~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 60 LYESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIAT 135 (354)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHH
Confidence 3345666 667788888888888899999999999999999999999999988875 555688999999999999999
Q ss_pred hhHHHHHHHHHH-hh----cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHH-HHHhc
Q psy2964 135 FNAFIFYYIIVL-EC----VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGL-IVAIF 203 (208)
Q Consensus 135 ~~~~~~~~~~~~-e~----~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~-~~~~~ 203 (208)
+..+..--++.. |- +|.+..+.-.+.+......+-.+.+..++.++. +-..+|.....+..++. ++...
T Consensus 136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 998877666653 32 222222222221100111222233334444433 23567777666555533 34444
Q ss_pred cCCC
Q psy2964 204 TPES 207 (208)
Q Consensus 204 ~pet 207 (208)
.+|.
T Consensus 216 W~EN 219 (354)
T PF05631_consen 216 WPEN 219 (354)
T ss_pred cccc
Confidence 5553
No 169
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.91 E-value=4.2e-08 Score=79.83 Aligned_cols=116 Identities=11% Similarity=-0.055 Sum_probs=90.9
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
++...++..++..++...+..+.+++.| |++.++.+..+..+.+++..+.+..++++.+.....+.+.+.+...+...+
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~ 320 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET 320 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3455667666666666656666666665 566677777888777777777777777777777777888888877788889
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.+..|+++|++++|+ .+....+|..++|.+++.+.
T Consensus 321 ~~~~~~p~~~~g~~~g~-~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 321 LSASLADARARGSYMGF-SRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred HHHhcCCcccchhhhhH-HHHHHHHHHHhcccchHHHH
Confidence 99999999999999999 78888899999999998875
No 170
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2e-08 Score=80.21 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=97.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHH-HHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAV-LGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....++..+.+-++...|++++|+++||+ |||... ++.++...++....-..+ |++...++.++.|+..-+...
T Consensus 286 s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm 365 (448)
T COG2271 286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM 365 (448)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 566788999999999999999999999987 566544 444444444444444444 557788888999988877777
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHH-HHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTV-SEVALPWIAYYLA---DWQWISVITIFPLIVG 197 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 197 (208)
.......|..|++--+++.|+ ...+..+ |...+....+++. ||...|++..+.++++
T Consensus 366 LiGl~a~e~~pK~AaGtA~Gf-~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~ 426 (448)
T COG2271 366 LIGLAAAEFVPKKAAGTATGF-VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLA 426 (448)
T ss_pred HHHHHHhccccHhhccchhch-hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHH
Confidence 888888999999999999999 4544444 6666655555553 8988888766655553
No 171
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.91 E-value=7.7e-08 Score=77.73 Aligned_cols=129 Identities=11% Similarity=0.159 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHhhhhhhHHHHHH-
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-SKDVVLFSLSRFLTGVGHFNAFIFYY- 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~- 142 (208)
+....+...+...++..++.++.+++.||+|+|+.+..+..+..++.++... .++.+...+..++.+++.....+...
T Consensus 233 s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 312 (382)
T PRK10091 233 SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQI 312 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5567888889999999999999999999999999999888887777655543 34555555555555555444334333
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV 196 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~ 196 (208)
....+..+++.++.+. ......+|..++|.+++.+. +|++.+.+.++...+
T Consensus 313 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~ 367 (382)
T PRK10091 313 LLLQNAKGGELLGAAG---GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFA 367 (382)
T ss_pred HHHHhCCcchHHHHHH---HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHH
Confidence 3344444555555443 24466789999999988764 577777776555444
No 172
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.91 E-value=3.1e-08 Score=90.54 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=99.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--------------------ccHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--------------------KDVVLFS 124 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 124 (208)
+....+++.+.+.++..++.++.|+++|+.++++.+..+.++.+++.+...+. .+.+.+.
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 56678899999999999999999999998887776666666655554433332 5667777
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy2964 125 LSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIF 192 (208)
Q Consensus 125 ~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~ 192 (208)
+..++.|++.+...+...+++.+..|++.|++++|. .+....++..+++.+.+.+. ++...+++.++
T Consensus 339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~-~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAA-NNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 888889999999889999999999999999999999 67778888888888877764 34444444443
No 173
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.90 E-value=1.1e-07 Score=76.40 Aligned_cols=116 Identities=7% Similarity=-0.080 Sum_probs=79.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---hh-ccHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---FS-KDVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+..+.++...+..++..++.++.+++.||+|||+.+..+..+..+...... .. .+.+...+...+.+.+.+.....
T Consensus 228 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T PRK11102 228 SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSN 307 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 556778888899999999999999999999999998888776544333222 22 23444444444444444444455
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
...++.|..| ++|+.+.++.......+|..+++.++....
T Consensus 308 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~ 347 (377)
T PRK11102 308 AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAPF 347 (377)
T ss_pred HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5666777766 789999888555556677777777765443
No 174
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.89 E-value=9.8e-08 Score=77.52 Aligned_cols=127 Identities=8% Similarity=-0.106 Sum_probs=95.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+..+.++..+...++..++++..+++.||.++|+.+..+.. .++...+..+.++++......++.|++.+...+...+.
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~ 317 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNAL 317 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 56678899999999999999999999999999988887753 34444445556666666677778899888877888888
Q ss_pred HHhhcCCch-hhhHHhHHHHHHHHHHHHHHHHHHHhhh--h--hHHHHHHHHHH
Q psy2964 145 VLECVGPKW-RTFAMTFPFLIFYTVSEVALPWIAYYLA--D--WQWISVITIFP 193 (208)
Q Consensus 145 ~~e~~~~~~-r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~--w~~~~~~~~~~ 193 (208)
+.+..|++. ++++.++ .+....++..++..+.+.+. + +...+...+.+
T Consensus 318 ~q~~~~~~~~~g~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 318 LQHRGHVLVGAGHSIAV-QNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HHhhCcccccchhHHHH-HhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888766654 7889888 67788888888877777664 3 33444444444
No 175
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.89 E-value=2e-07 Score=71.52 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD--VVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+...+..+ .+.+.+.|+..|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 35788889999999999999999999999998888888765555555566555 8888899999999999889999999
Q ss_pred HHhhcCC-chhhhHHhHHHHH-HHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHH
Q psy2964 145 VLECVGP-KWRTFAMTFPFLI-FYTVSEVALPWIAYYLA-----DWQWISVITIFPL 194 (208)
Q Consensus 145 ~~e~~~~-~~r~~~~~~~~~~-~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~ 194 (208)
+.|..|. +.|+...+. ... ...+|..++|.+++.+. +|++.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 119 LSEWFPEATERGLAVGL-VTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHhcCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999988 678888777 344 46677777776665553 6888666554443
No 176
>KOG2504|consensus
Probab=98.86 E-value=1.7e-08 Score=84.20 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=126.3
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (208)
+....+.++ ++.+.+...++..+...++.++.|+++|+.. ++.+..++.+..+++.+...+.++++.+...-.+.
T Consensus 322 ~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~f 398 (509)
T KOG2504|consen 322 PSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILF 398 (509)
T ss_pred HHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344445554 6778889999999999999999999999988 56677788888888888889999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccC
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTP 205 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~p 205 (208)
|++.|.........+.|..+.++-..+.|+ .....+++..++|.+++++. +|...|+.++++.+++..+++..|
T Consensus 399 G~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl-~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 399 GFCVGSFSSLTPVILVDLVGLEKLSNAYGL-LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcChhhcchHHHH-HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999988888899999999999999999 67788999999999999775 588888888887777666555443
No 177
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.86 E-value=2.3e-07 Score=73.05 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=92.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+..+.+...+.+..+.++|.+..+++.||+|+|+.+..+..+..++..+....++... ....++.|++.+..+|...+.
T Consensus 176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~ 254 (310)
T TIGR01272 176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSL 254 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999999999998888877777655555554332 345668899999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVI 189 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~ 189 (208)
..+..|++ .+++.++ .. ...+|..+.|.+.+.+. +.+..+++
T Consensus 255 a~~~~~~~-~~~asai-~~-~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 255 ALNALGRH-TSQGSGI-LC-LAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHhhhhhh-hhhhHHH-HH-HHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 98888754 3455555 43 45578888998777764 54555553
No 178
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.85 E-value=2e-07 Score=74.70 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=106.9
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVG 133 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~ 133 (208)
+.+..++ +....++...+|.++..+|..+.|++.|| +.|+.+.....+..+......+.. +.+.....-++.|+.
T Consensus 238 L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a 313 (394)
T COG2814 238 LESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA 313 (394)
T ss_pred HHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3344455 67789999999999999999999999999 999999998888888777666654 455555556666666
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 201 (208)
............++ ..++.+..+.++ +...+++|..+|..+++.+. ++....++.++..+.++...
T Consensus 314 ~~~~~~~~~~~~a~-~~p~~~~~a~sl-~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 314 FSPALQGLQTRLAR-LAPDAADLAGSL-NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred hhhhhhHHHHHhcc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 66555555555555 447889999999 77788999999999998876 67777777777766655443
No 179
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.85 E-value=1.8e-07 Score=70.96 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=92.1
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-------ccHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-------KDVVLF 123 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~ 123 (208)
.-+.+.+.+++ ++.+...+...-.+|..+| ++.|.+.|++|++.++.++.+...++..+...+ .++|.+
T Consensus 24 yS~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 24 YSPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 34556666776 6777888888888888764 889999999999999999999999998776653 356777
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHH-HHHHHHhhh
Q psy2964 124 SLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVA-LPWIAYYLA 181 (208)
Q Consensus 124 ~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 181 (208)
.+..++.|.+.+...........+.+| ++||++.|+.- ...+++..+ ..+...+..
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk-~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILK-GFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhh-HHHHhHHHHHHHHHHHHcC
Confidence 777778888777666666666678887 57999999944 455555544 344444443
No 180
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.85 E-value=1.7e-08 Score=82.22 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=107.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
++....-+.+.|..-.-+.++++||++||+ |+|++++.+.+++.+++++.+... +...+.++-.+.++|.|..=+..
T Consensus 59 ~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~Ni 138 (498)
T COG3104 59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI 138 (498)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccH
Confidence 344455555666666667889999999975 999999999999999999988874 77788888888889999998999
Q ss_pred HHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhc
Q psy2964 142 YIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIF 203 (208)
Q Consensus 142 ~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 203 (208)
.+++.|.+|++. |-.+.++ +-.+.++|..++|.+.+++. +|...|...++-...+++....
T Consensus 139 S~llg~ly~~~DprrD~gFt~-fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 139 SSLLGELYPKDDPRRDGGFTL-FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHHHHHhcCCCCcccCCCccE-EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996433 4455555 33466788999999988886 8888888776665555554443
No 181
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.83 E-value=5.6e-08 Score=76.98 Aligned_cols=115 Identities=22% Similarity=0.339 Sum_probs=93.9
Q ss_pred eecccccccC-CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHh
Q psy2964 56 RRRDNWVCDG-SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTG 131 (208)
Q Consensus 56 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g 131 (208)
.+.+++ + ....+...++..++..++.++.|++.||+|+|+.+........+........ ++........++.|
T Consensus 234 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 310 (352)
T PF07690_consen 234 QEVLGF---SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIG 310 (352)
T ss_dssp CHHHHC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHH
T ss_pred hhccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455565 3 3567777888899999999999999999999888888777777766655544 34566667788899
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP 174 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~ 174 (208)
++.+...+....++.|..|+++|+++.|+ .+....+|..++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~igP 352 (352)
T PF07690_consen 311 FGFGIVFPILFSLIQELVPPEYRGTAFGL-FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHCHHHHHHHHCCCHTCHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHCC
Confidence 99999999999999999999999999999 6778888888876
No 182
>KOG0254|consensus
Probab=98.82 E-value=1.6e-07 Score=78.87 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc-------------HHH-HHHHHHHHhhhhh
Q psy2964 70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD-------------VVL-FSLSRFLTGVGHF 135 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~l~g~~~~ 135 (208)
.+...+..+...++..++..+.||+|||+.++.+...+.++.++.+.... ... ...+-++..+..+
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 55556666777888888899999999999999999999999887765411 111 1122233333333
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHH-HHHHHHHH-HHHhccCCCC
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD--WQWISVIT-IFPLIVGL-IVAIFTPESA 208 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~--w~~~~~~~-~~~~~~~~-~~~~~~petp 208 (208)
. .+..+.+.+|.+|.+.|+.+.++.....+.....+.-........ +...|... ++..+... +.++++|||.
T Consensus 412 ~-g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 412 W-GPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred c-ccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 3 477788999999999999999997776666666664443333332 23445444 34444444 5778899984
No 183
>PRK09669 putative symporter YagG; Provisional
Probab=98.80 E-value=9.3e-08 Score=78.82 Aligned_cols=138 Identities=10% Similarity=0.053 Sum_probs=90.0
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCch-HHHHHHHHHHHHHHHHHhhhcc------HHHHHH
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR----YGRI-TAVLGSHVVSFLGVALTPFSKD------VVLFSL 125 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~ 125 (208)
+.+++ +....+.+..+..+.-.+..++.|+++|| +||| +.++.+....+++..+....++ ...+.+
T Consensus 38 ~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~ 114 (444)
T PRK09669 38 DVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACV 114 (444)
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 45566 67788999999999999999999999998 7884 5555666666666554444432 233444
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHH----HHhh------hhhHHHHHHHHHHH
Q psy2964 126 SRFLTGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWI----AYYL------ADWQWISVITIFPL 194 (208)
Q Consensus 126 ~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~----~~~~------~~w~~~~~~~~~~~ 194 (208)
.-.+.+.+.........++.+|+. ++++|.+..+. ......+|..+++.+ ...+ .+|+..+.+.+++.
T Consensus 115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~-r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSW-RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 445556555566667778999987 56888877666 444445555554432 2222 15776776666665
Q ss_pred HHHH
Q psy2964 195 IVGL 198 (208)
Q Consensus 195 ~~~~ 198 (208)
.+..
T Consensus 194 ~v~~ 197 (444)
T PRK09669 194 VVLF 197 (444)
T ss_pred HHHH
Confidence 5533
No 184
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.80 E-value=1.3e-07 Score=75.54 Aligned_cols=124 Identities=11% Similarity=0.028 Sum_probs=88.8
Q ss_pred cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
+.+.++.++ +....+...+++.++.++++++.|++.||+ +||+.+..+..+..++.....+.++..... ...+.|
T Consensus 221 p~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 221 PAILISHGA---SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 334444454 556788889999999999999999999999 567777777777777766565554332222 346778
Q ss_pred hhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 132 VGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.+...+.....+.+.. ++++++...++ .+....++..++|.+.+.+.
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAM-AQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 888888887777776555 45667888777 45566677788888888775
No 185
>KOG2816|consensus
Probab=98.77 E-value=1.7e-07 Score=77.30 Aligned_cols=129 Identities=21% Similarity=0.178 Sum_probs=96.8
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR 154 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r 154 (208)
...+...+.++..|.++||||||..+.+......+......+.. +|.++ .--+.|.. +..+....++++|....++|
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g~~-~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSGGF-SAIFSVGFAYVADISSEEER 146 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hcccccch-hhhhhhhhhheeeccchhHH
Confidence 34567788899999999999999999999988888777666654 33333 22222322 34457888999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964 155 TFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES 207 (208)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet 207 (208)
....++ .+..+..+..++|.+++.+. +.-..+.+..+..+. .....+++||+
T Consensus 147 ~~~~gl-l~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 147 SSSIGL-LSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred HHHHHH-HHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999 67678889999999999876 445566676666665 44566778886
No 186
>PRK09848 glucuronide transporter; Provisional
Probab=98.76 E-value=1.1e-06 Score=72.58 Aligned_cols=106 Identities=9% Similarity=0.125 Sum_probs=83.7
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGP 151 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~ 151 (208)
....++.+++.++.+++.||+|+|+.+.++.++..++..+..+.+ +.+.+.+..++.|++.+...+...+..+|..|.
T Consensus 271 ~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~ 350 (448)
T PRK09848 271 VQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEY 350 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333566788999999999999999999999988888776665543 566666677888999999999999999998865
Q ss_pred c-------hhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 152 K-------WRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 152 ~-------~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
+ .++...|+ ++....+|..+++.+.+.+
T Consensus 351 ~~~~~g~r~~G~~~~~-~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 351 GEYLTGVRIEGLTYSL-FSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred hHHhhCccchhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4 35777777 7777888888887776654
No 187
>PRK10133 L-fucose transporter; Provisional
Probab=98.76 E-value=4.9e-07 Score=74.51 Aligned_cols=125 Identities=8% Similarity=0.120 Sum_probs=92.3
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....++....+.++..++.++.+++.||+|||+++..+.++..+...+..+.++. .......+.|++.+..+|.....
T Consensus 293 s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~ 371 (438)
T PRK10133 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSL 371 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999988887777666655555543 23456678999999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFP 193 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~ 193 (208)
..+..|++ .+.+.++ .. ....|..++|.+.+.+. | -+..|++..+.
T Consensus 372 a~~~~~~~-~~~as~l-~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~ 421 (438)
T PRK10133 372 GIKNLGQD-TKYGSSF-IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_pred HHcccchh-hccchhH-Hh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99988653 5566666 33 33356666666666654 3 45555544333
No 188
>KOG3762|consensus
Probab=98.71 E-value=9e-08 Score=78.59 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL 146 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 146 (208)
..-|........+-++.-++.+++.+|+|+-+++..++.+.++=.+.....+|+|..+...+++|+..+..+.+..+|++
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666777888899999999999999999999999888899999999999999999999999999999999
Q ss_pred hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964 147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV 196 (208)
Q Consensus 147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 196 (208)
...|++.|+.+.++......++|-.+|.++++.+. +-+..|.+.++.+++
T Consensus 486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 99999999999999777778888899999998876 556666666555544
No 189
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.71 E-value=4.9e-07 Score=74.19 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=96.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
++...+....+..++..++.+++++++||+|+|+++..+.++.+++..+..+.+ +.+.+.+..++.|++.+...+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~ 337 (428)
T PF13347_consen 258 NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPW 337 (428)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccc
Confidence 345677777888999999999999999999999999999999999998888875 889999999999999999999999
Q ss_pred HHHHhhcCC-------chhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 143 IIVLECVGP-------KWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 143 ~~~~e~~~~-------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
++++|..+. +..+...|+ ++...-++..+++.+.+.+
T Consensus 338 a~~ad~id~~e~~tg~r~~g~~~s~-~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 338 AMLADVIDYDEWKTGRRREGMYFSV-NSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred cccccchhhHHHhcCCCchHHHHHh-hhhhhHHHHHHHHHHHHHH
Confidence 999999863 334566666 6667777777777666654
No 190
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.70 E-value=4.3e-07 Score=75.45 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=108.8
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----------ccHHHHHHHHHHHhhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----------KDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~ 134 (208)
+....+....+..++.+++....+++.+|++.|+++.++.++.+++....... ++.+.+....++.+++.
T Consensus 286 s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~ 365 (468)
T TIGR00788 286 GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLA 365 (468)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHH
Confidence 67788888888999999999999999999999999999999998877554311 23334445567888888
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-----h--HHHHHH-HHHHHHHHHHHHhc
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-----W--QWISVI-TIFPLIVGLIVAIF 203 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-----w--~~~~~~-~~~~~~~~~~~~~~ 203 (208)
+........++.+..|++.+++..++ .+....+|..+++.+++.+. | + .+..++ ..++.++.+...++
T Consensus 366 g~~~~~~~~~~~~~~p~~~egt~~al-~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~l 444 (468)
T TIGR00788 366 QLKFMPFLVLLARLCPSGCESSVFAL-LASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHL 444 (468)
T ss_pred HHHHccHHHHHHHhCCCCceehHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999 67678999999998888775 2 3 233333 33444555555567
Q ss_pred cCC
Q psy2964 204 TPE 206 (208)
Q Consensus 204 ~pe 206 (208)
+|+
T Consensus 445 lP~ 447 (468)
T TIGR00788 445 LPR 447 (468)
T ss_pred CCC
Confidence 784
No 191
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.69 E-value=2.1e-06 Score=69.49 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=71.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....+...+...++..++.++.+++.||+|||+.+..+..+..++..+....++.+.......+.+.+.+...+. ..
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~ 314 (392)
T PRK10473 237 SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AM 314 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HH
Confidence 4456777788888999999999999999999999999999888888777776655544444444444444443333 33
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
..+..|.++|+...+ .....+..+++.+++++.
T Consensus 315 ~~~~~~~~~~~g~~~----~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 315 SQALGPFSLRAGVAS----STLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHHhccCcccccHHH----HHHHHHHHHHHHHHHHHH
Confidence 455556555542222 223344445555554443
No 192
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.68 E-value=1.6e-06 Score=72.30 Aligned_cols=127 Identities=6% Similarity=-0.031 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHh----hhh-hCchHHH--HHHHHHHHHHHHHHhh---------hccHHHHHHHHHHHhh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWV----ADR-YGRITAV--LGSHVVSFLGVALTPF---------SKDVVLFSLSRFLTGV 132 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l----~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~ 132 (208)
.+++.++..+..++.+++..++ .+| .+++... .++.++.+++....++ ..++++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 5677777777777777775543 443 3334444 6777777777766654 3588889999999999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV 196 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 196 (208)
+.....|....++++..|++.|++.+|+ +.....+|..+++.+..... +|.+.|...++..++
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGM-WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLL 459 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999 77788899988888777653 566666665554444
No 193
>PRK09669 putative symporter YagG; Provisional
Probab=98.67 E-value=3.6e-06 Score=69.46 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF--SKDVVLFSLSRFLTGVGHFNAFIFYYIIV 145 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 145 (208)
..+.......++.+++.+++++++||+|+|+.+..+.++..+......+ .++.+.+.+..++.|++.+...+..++.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666778888999999999999999999888766654433222 24666677778899999999999999999
Q ss_pred HhhcCC-------chhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 146 LECVGP-------KWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 146 ~e~~~~-------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
+|..+. +..+...+. ++...-+|..+++.+++.+
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~-~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFST-NLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 998852 223344555 5666678888888777765
No 194
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.65 E-value=7.1e-07 Score=74.28 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCc-hHHHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVAD----RYGR-ITAVLGSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVG 133 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~ 133 (208)
+....+.+..+..+.-++..++.|.++| |+|| |+.++++....+++..++...++ +..+.+.-.+.+++
T Consensus 40 s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~ 119 (473)
T PRK10429 40 SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMT 119 (473)
T ss_pred CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence 5677888888888888999999999999 6799 66666677777776555543321 22333444555667
Q ss_pred hhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHHH-HHH
Q psy2964 134 HFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVGL-IVA 201 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~~-~~~ 201 (208)
.........++..|+. ++++|.+..+. ......+|..+.+.+... .. +|+....+.++..++.. +..
T Consensus 120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~-~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 120 YTIMDIPFWSLVPTLTLDKREREQLVPY-PRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHcchHHhhhHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999998 69999988776 344444554443333221 11 45666555555554433 334
Q ss_pred hccCC
Q psy2964 202 IFTPE 206 (208)
Q Consensus 202 ~~~pe 206 (208)
+..+|
T Consensus 199 ~~~~e 203 (473)
T PRK10429 199 RNVHE 203 (473)
T ss_pred cCcee
Confidence 44555
No 195
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.7e-07 Score=74.85 Aligned_cols=140 Identities=14% Similarity=0.008 Sum_probs=98.7
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-------ccHHHHHHHH
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-------KDVVLFSLSR 127 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 127 (208)
+.++|++ +....+.....+.+...+..+.+|+++||+|.++++......++++..+.... .+........
T Consensus 245 ~~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 321 (417)
T COG2223 245 LVTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVF 321 (417)
T ss_pred HHHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHH
Confidence 5566776 67778888999999999999999999999999999999999999988776665 3344444434
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~ 199 (208)
+..+++.+......+..+...+|. +-+...|+ .+...++|+..-|..-+... .+...|++.....+++.+
T Consensus 322 l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~-vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v 395 (417)
T COG2223 322 LALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGI-VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV 395 (417)
T ss_pred HHHHHHhccCcchheeechHHHHh-hhhHHHHH-HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 444444444444556677777754 55666677 56666777666665555543 477777777666666444
No 196
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.64 E-value=9.4e-11 Score=96.50 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=82.6
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh--h--h-cc-----HHHHHHHH-HHHhhhhhhHHHHHHH
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP--F--S-KD-----VVLFSLSR-FLTGVGHFNAFIFYYI 143 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~-~~-----~~~~~~~~-~l~g~~~~~~~~~~~~ 143 (208)
...+...++.+....+.||+|||+.++.+..+.+++.+.++ . . ++ ...+.... ....+.. ...+..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-g~~~~~~~ 372 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSL-GWGPLPWI 372 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccc-cccccccc
Confidence 33445566777777999999999999999998888877664 1 1 11 11111111 1122222 23367778
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHH-HHHHHHHHhccCCCC
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFP-LIVGLIVAIFTPESA 208 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~-~~~~~~~~~~~petp 208 (208)
+.+|.+|++.|+++.+++.... .++..+++.+...+. +-...+.+.+.+ .+...+.++++|||.
T Consensus 373 ~~~ElfPt~~R~~~~~~~~~~~-~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 373 YTAELFPTKVRSTGIGLSYAVG-RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 9999999999999999965543 356666655544433 202234444443 444556778899984
No 197
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.63 E-value=1.5e-06 Score=71.65 Aligned_cols=124 Identities=10% Similarity=-0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh-hh-----ccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP-FS-----KDVVLFSLSRFLTGVGHFNAFIFYYIIVLE 147 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 147 (208)
.+..+...+..+++|+++||+|+|+++.++.+...++..... .. .+++.+.+..+...++.|........++..
T Consensus 293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~ 372 (462)
T PRK15034 293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV 372 (462)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence 344567788899999999999999999999987777664322 22 234555554444445555555666677777
Q ss_pred hcCC---------------------chhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964 148 CVGP---------------------KWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL 198 (208)
Q Consensus 148 ~~~~---------------------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 198 (208)
.+|. ++-+.+.|+ .+....+|+.+.|..-+... ++...++...+..+++.
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~-v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 447 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGF-ISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCV 447 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHH-HHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7764 134445555 44455666666674444332 56666666655554433
No 198
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.63 E-value=1.5e-06 Score=70.68 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=77.4
Q ss_pred hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q psy2964 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRF 128 (208)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (208)
+.++...++.++ +..++|.+.++..+..++.++++|.++||++ +|+.+.+..++.++........++++.++....
T Consensus 23 p~~~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~ 99 (400)
T PF03825_consen 23 PYLPLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIML 99 (400)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 334556666676 7789999999999999999999999999986 567777777777776666777788888887777
Q ss_pred HHhhhhhhHHHHHHHHHHhhcC
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
+..+......|...++..+...
T Consensus 100 l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 100 LFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777888888877764
No 199
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.62 E-value=5.8e-06 Score=68.85 Aligned_cols=115 Identities=10% Similarity=0.127 Sum_probs=82.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-----hccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-----SKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....+...++..++.+++.+++++++||+|+|+.+..+..+..++...... .++.+.+.+..++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667888999999999999999999999888776655544332 24556666677888888888888
Q ss_pred HHHHHHHhhcC-----Cch--hhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 140 FYYIIVLECVG-----PKW--RTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 140 ~~~~~~~e~~~-----~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
..+++++|..+ ..+ .+...|. .....-+|..+++.+.+++
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~-~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSV-QTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999955 233 3334555 5555667777777766654
No 200
>PRK11043 putative transporter; Provisional
Probab=98.60 E-value=5.1e-06 Score=67.44 Aligned_cols=123 Identities=8% Similarity=-0.008 Sum_probs=82.8
Q ss_pred ceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hh--hccHHHHHHHHH
Q psy2964 54 RRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PF--SKDVVLFSLSRF 128 (208)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~ 128 (208)
.+.++.++ +....++......++..++.+..+++.||+|+|+.+........++.... .. .++.+.......
T Consensus 228 ~~~~~~g~---s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (401)
T PRK11043 228 FILEQMGY---SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFC 304 (401)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33344454 45566777777778888999999999999999987766555544443322 11 234555555667
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
+.|++.+...+.......+..| ++|+++.++ .+.....+...++.+.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 305 VMAAANGAIYPIVVAQALRPFP-QATGKAAAL-QNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhhCc-ccChHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence 7788888888888788777775 579999999 45454555555555555543
No 201
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.58 E-value=3.5e-06 Score=68.89 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964 70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV 149 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 149 (208)
+...+.+..+..+|.++.+++.||+++|+++.+..++..+...+....++... ...-.+.|++.+..+|...+...+..
T Consensus 272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~ 350 (410)
T TIGR00885 272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGL 350 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666788999999999999999999999998888888887777766443 56677888888888999999999999
Q ss_pred CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh
Q psy2964 150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD 182 (208)
Q Consensus 150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 182 (208)
+++.+....++ . ...+|..+.|.+.+.+.+
T Consensus 351 g~~~~~~s~~l--~-~~~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 351 GQDTKYGAAGL--V-MAIIGGGIVPPLQGFIID 380 (410)
T ss_pred hhhhhhhHHHH--H-HHHhccchHHHHHHHHHH
Confidence 87765545444 2 223888888888887764
No 202
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.57 E-value=2e-06 Score=71.26 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=84.9
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHH--------HHHHHHH--HHHHHHHhh-hccHHHHHHHHHHHhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAV--------LGSHVVS--FLGVALTPF-SKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~ 133 (208)
+....++..++..++..++.++.|+++||+++|+.. ..+.... .+..+.... ..+....+++-.+.+.+
T Consensus 295 s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (465)
T TIGR00894 295 SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAV 374 (465)
T ss_pred ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 556778888889999999999999999998754321 1111111 111111122 22333334444455555
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHh
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA------DWQWISVITIFPLIVGLIVAI 202 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~ 202 (208)
.+...+.......|..| +.++...++ .+....+|..++|.+.+.+. +|...|.+.++..+++.+...
T Consensus 375 ~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 375 SSGPLAGVLINSLDLAP-RFLGFIKGI-TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhhhhhhhhchhhcCh-hHHHHHHHH-HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 44444444555566665 489999998 67777788888888887653 377788877766666554443
No 203
>KOG4686|consensus
Probab=98.56 E-value=1.5e-06 Score=66.51 Aligned_cols=121 Identities=17% Similarity=0.055 Sum_probs=93.2
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH-HHHHHhhhccHHHHHHHHHHHhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL-GVALTPFSKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~~ 133 (208)
+.+.|++ ++...+.+.+.......+.++++|.++||+|++...+.+.....+ ++....++ .+.=.....+.|+.
T Consensus 291 F~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 291 FQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLS 365 (459)
T ss_pred HHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhh
Confidence 4566777 566677777787888889999999999999999877766554433 33333332 22223456788888
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
.+..-...|..++.+.|.++-+++.++ .++..++|-.+.|++++.+.
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf-~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGF-IQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHH-HHHHHhhhhhHHhhhhheee
Confidence 888767789999999999999999999 67789999999999999986
No 204
>KOG0255|consensus
Probab=98.56 E-value=6e-06 Score=69.50 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=97.2
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH---HHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964 73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV---LFSLSRFLTGVGHFNAFIFYYIIVLECV 149 (208)
Q Consensus 73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 149 (208)
...............+...|+.|||.....+..+..++.++.+...... ...+...+..++.+..+.....+.+|.+
T Consensus 356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 435 (521)
T KOG0255|consen 356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI 435 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555666667899999999999999999999999888875433 2445555555666666677799999999
Q ss_pred CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh-hHH-HHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD-WQW-ISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~-w~~-~~~~~~~~~~~-~~~~~~~~petp 208 (208)
|+..|..+.+. .+....+|.+++|.+...... +.. .+.+.+....+ +.+...++|||.
T Consensus 436 pt~~r~~~~~~-~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 436 PTVVRNTAVGA-ISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999 677888999999988876642 222 22223444444 445557889873
No 205
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.55 E-value=6.5e-06 Score=69.07 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhHHHHH----HHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc---------HHHHHHHHHHHhhhhh
Q psy2964 69 LAITRSIFFLGSLLGGFIL----SWVADRYGRITAVLGSHVVSFLGVALTPFSKD---------VVLFSLSRFLTGVGHF 135 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~ 135 (208)
.++..++..+...+..++. +++.+|+++...+.++.++.+++....+...+ .++++...++.|++..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4555666665555555555 55566666667788888888888877665533 4578888999999999
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 178 (208)
...|....++.+..|++.|++.+|. +.....+|..++..+..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~-~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGS-WFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 66666677776655553
No 206
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.53 E-value=7.4e-06 Score=57.67 Aligned_cols=107 Identities=7% Similarity=0.016 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q psy2964 71 ITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
...++......+.+++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+..+.....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 33466666778888889999999999999999999988654433 44677888999999999999999999999999999
Q ss_pred CchhhhHHhHHHHHHHHHHHHHHHHHHHh
Q psy2964 151 PKWRTFAMTFPFLIFYTVSEVALPWIAYY 179 (208)
Q Consensus 151 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (208)
++.|++..++.+. ....+.+.|.++...
T Consensus 120 ~~~~~~~~~ifw~-i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 120 EETIGRNTGIFWA-IFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHhhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999888544 444566666554443
No 207
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.51 E-value=1.2e-05 Score=66.69 Aligned_cols=137 Identities=8% Similarity=-0.013 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhhcc---------------------HHHHHHHHH
Q psy2964 71 ITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFSKD---------------------VVLFSLSRF 128 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 128 (208)
+....+.+...+.+++-.++.+|+|+ |.....+.++.+++.....+.++ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 44455555656777788889999995 77778888888877776665432 366777788
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCC--chhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHH-HHHH
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGP--KWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIV-GLIV 200 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~-~~~~ 200 (208)
+.|+..+......++++++..+. +..|..+|+ ++.+..+.+.+..+..+.+. +-.+.+.+.++..++ +.+.
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgi-lN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGV-LNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 455889999 78888888888776655543 345677778887777 5556
Q ss_pred HhccCCCC
Q psy2964 201 AIFTPESA 208 (208)
Q Consensus 201 ~~~~petp 208 (208)
++.+|.+|
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 67788764
No 208
>KOG0252|consensus
Probab=98.48 E-value=3.6e-08 Score=79.54 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccH-------H-HHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964 78 LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV-------V-LFSLSRFLTGVGHFNAFIFYYIIVLECV 149 (208)
Q Consensus 78 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 149 (208)
.++..|-.+...++|++|||+..+.+..++.+..+..+...+. . ...+..++.-+| .......+.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F 435 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF 435 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence 3444577777788999999999999999999998888776551 1 112223333333 2345567889999
Q ss_pred CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964 150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--------DWQWISVITIFPLIVGLIVAIFTPESA 208 (208)
Q Consensus 150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~w~~~~~~~~~~~~~~~~~~~~~petp 208 (208)
|.+.|++..|+ .....-.|.+++...-..+. +.++.+++.+.+.++..+..+++|||.
T Consensus 436 ParvR~t~hGI-sAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 436 PARVRSTCHGI-SAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred hHHHhhhhhhH-HHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 99999999999 45555567777665555543 568889999999998888888899973
No 209
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.43 E-value=1.6e-05 Score=66.52 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHH-------HHHHHHHHHHHHHHHh-----hh-----ccHHHHHHHHHHHh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITA-------VLGSHVVSFLGVALTP-----FS-----KDVVLFSLSRFLTG 131 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~g 131 (208)
..+++++..+..++..++.+++.||+|+|+. +.++.++.+++.+..+ .. .+.+.+...-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3555666667777888889999999999973 6667777666653221 11 24677777889999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
++.+...+....++.+..|++.++.++|+ +.....+|..++..++...
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~-~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGM-WFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 7778888888887777544
No 210
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.40 E-value=2.8e-05 Score=62.96 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=81.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHH-HHHhh--hccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV-ALTPF--SKDVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
+....++......++..++.++.+++.||+|++.............. ..... ..+.+.+.....+.|++.+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (394)
T PRK11652 241 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA 320 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777788888899999999999984333222222222111 11111 2355666777888999999888999
Q ss_pred HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
..+..|..| ++++...++ .+....+|..+++.+++.+.
T Consensus 321 ~~~~~~~~~-~~~g~~~~~-~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 321 TSGAMEPFP-YLAGTAGAL-LGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHhhcc-ccchHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence 999999886 578888888 66677889999988887765
No 211
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.39 E-value=1.2e-05 Score=69.22 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=96.1
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhcc--------HHHHHHHHHHHhhhhhh
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSKD--------VVLFSLSRFLTGVGHFN 136 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~ 136 (208)
......+...+....-+.++++|+++| ++||++.+.++.++..++..+..+... ....+++-.+.+.|.|.
T Consensus 22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg 101 (654)
T TIGR00926 22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG 101 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence 444555556666666778889999999 789999999999999999887766421 12345666778888888
Q ss_pred HHHHHHHHHHhhcCCch---hhhHHhHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHH
Q psy2964 137 AFIFYYIIVLECVGPKW---RTFAMTFPFLIFYTVSEVALPWIAYYLA----------DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 137 ~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~ 200 (208)
.-++..+...|.++++. |.....+ +-.+.++|..+++.+..++. +|...|.+.++..++++++
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~-fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSF-FYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 88999999999997543 4556666 33466677777777766664 3777787777666654443
No 212
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.39 E-value=5.2e-05 Score=63.17 Aligned_cols=143 Identities=20% Similarity=0.136 Sum_probs=95.9
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHH-HHHHHHhhh-c-cHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSF-LGVALTPFS-K-DVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
.+...++..++..+..++..++.|.++|+-|+||.++....+.+ ++++++.+. + +++...+...+.-.+.+......
T Consensus 68 ~~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 68 TSSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788889999999999999999999988877665555544 445555553 3 34444445555557777788899
Q ss_pred HHHHHhhcCCchh--------------------------hhHHhHHHHHHHHHHHHHHHHHHHhhh-----------hhH
Q psy2964 142 YIIVLECVGPKWR--------------------------TFAMTFPFLIFYTVSEVALPWIAYYLA-----------DWQ 184 (208)
Q Consensus 142 ~~~~~e~~~~~~r--------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~w~ 184 (208)
.+++.|+.+++.+ ++..+..++.++ +|..+.-.+...+. +-|
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy-~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGY-IGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 9999999998888 787777555444 44444333322221 236
Q ss_pred HHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 185 WISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
..+.+.++..++ .+...+++||.|
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~ 251 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRP 251 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 667776666544 666777777754
No 213
>PRK11462 putative transporter; Provisional
Probab=98.38 E-value=2e-05 Score=65.44 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCchHHHH-HHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADR----YGRITAVL-GSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVG 133 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~ 133 (208)
+....+.+..+.-+--++.-|+.|.++|| +|||+..+ ++.+..+++..++-..++ ...+.+.-.+...+
T Consensus 43 ~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~ 122 (460)
T PRK11462 43 PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLL 122 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence 55566777777777778899999999994 79876554 565666666655544332 22333444555677
Q ss_pred hhhHHHHHHHHHHhhcC-CchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHHHH-HH
Q psy2964 134 HFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVGLI-VA 201 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~~~-~~ 201 (208)
.........++.+|+.+ +++|++..++ ...+..+|..+++.+... .. +|+....+.+++.+++.+ +.
T Consensus 123 ~t~~~ipy~al~~~lt~d~~eRt~l~s~-r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 123 YTVVNIPYCALGGVITNDPTQRISLQSW-RFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHhccHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777888899999976 8999999887 565666666555444322 11 466666666665555443 33
Q ss_pred hccCC
Q psy2964 202 IFTPE 206 (208)
Q Consensus 202 ~~~pe 206 (208)
...+|
T Consensus 202 ~~~kE 206 (460)
T PRK11462 202 FTTKE 206 (460)
T ss_pred hccee
Confidence 33444
No 214
>KOG2563|consensus
Probab=98.38 E-value=7.4e-06 Score=66.29 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh------ccHH--HHHHHHHHHhhhhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS------KDVV--LFSLSRFLTGVGHFN 136 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~l~g~~~~~ 136 (208)
+....-|...+|++.+....+++-|+.||+|-|..+.++....+++..+-..+ +.++ ....+..+.+.....
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence 44556788999999999999999999999999999999999999998775543 2334 566777787777666
Q ss_pred HHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 137 AFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 137 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
......-+..-|+++++|+.+..+. ..+..+|..++.++...+
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~-v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLG-VMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHH-HhcchHHHHHHhhcccee
Confidence 6555556677789999999998773 334456666555554443
No 215
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.37 E-value=7e-07 Score=73.31 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCchHHHH-HHHHHHHHHHHHHhhh-c-------cHHHHHHHHHHHh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVAD----RYGRITAVL-GSHVVSFLGVALTPFS-K-------DVVLFSLSRFLTG 131 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~l~g 131 (208)
+....+.+..+..+..++..++.|.++| |+|||+..+ .+....+++..++... + ....+.+.-++..
T Consensus 35 ~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~ 114 (428)
T PF13347_consen 35 SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFD 114 (428)
T ss_pred CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHH
Confidence 5667788888888888899999999999 899766554 6777777777666655 3 1223345555667
Q ss_pred hhhhhHHHHHHHHHHhhcC-CchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHH-HH
Q psy2964 132 VGHFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVG-LI 199 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~-~~ 199 (208)
++.........++..|+.+ +++|.+..+. ...+..+|..+...+... .. +|++...+.+++.++. .+
T Consensus 115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~-~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i 193 (428)
T PF13347_consen 115 IAYTFVQIPYNALIPELTPDPDERTRLSSW-RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI 193 (428)
T ss_pred HhhhhccCchhhcCccccccHhhhhhHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence 7777777888899999987 5788888777 555555666443333332 22 5888887777776664 44
Q ss_pred HHhccCC
Q psy2964 200 VAIFTPE 206 (208)
Q Consensus 200 ~~~~~pe 206 (208)
..+..+|
T Consensus 194 ~~~~~ke 200 (428)
T PF13347_consen 194 TFFFVKE 200 (428)
T ss_pred hhheeee
Confidence 4555666
No 216
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.33 E-value=7.1e-05 Score=60.16 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=108.0
Q ss_pred cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHhhh
Q psy2964 58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPF---SKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~ 133 (208)
-|++ +..+...++.....|..++-...|++.. |.++|+...+++....++..+... ..+.+.+...-++.|++
T Consensus 238 Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 238 VFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred HcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 3566 5667788888999999999999998876 788888888888888777665444 46788888999999999
Q ss_pred hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHH
Q psy2964 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-------------DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~w~~~~~~~~~~~~~~~~ 199 (208)
.|.......+...++.++++.+..+|. |.....++..++..+++.+. +|...|.+-++..++++.
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~-WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGA-WGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999998999999999999999999999 88888888888877777653 344455555555444443
No 217
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.32 E-value=9.5e-06 Score=63.90 Aligned_cols=80 Identities=14% Similarity=-0.030 Sum_probs=68.5
Q ss_pred hhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--------------
Q psy2964 116 FSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-------------- 181 (208)
Q Consensus 116 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------- 181 (208)
..++++.+++.-++.|.|.+...+..+.++++..+++++++.+++ .+.++++|..++|.+++.+.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~-~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLAL-TQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHH-HHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 346789999999999999999999999999999999999999999 78899999999999988543
Q ss_pred -----hhHHHHHHHHHHHHH
Q psy2964 182 -----DWQWISVITIFPLIV 196 (208)
Q Consensus 182 -----~w~~~~~~~~~~~~~ 196 (208)
+|+++|++.+...++
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 578888866554433
No 218
>KOG3764|consensus
Probab=98.29 E-value=3e-06 Score=67.52 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
..++.+..---..+.+.+++.+.|.++||++ |-.....+++..++++....+++++..+.+-++..+++.+...+...
T Consensus 304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~ 383 (464)
T KOG3764|consen 304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLI 383 (464)
T ss_pred CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3445555555567788999999999999999 76666677777777777888899999999988888888887776666
Q ss_pred HHHHhhcCCc------hhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964 143 IIVLECVGPK------WRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV 196 (208)
Q Consensus 143 ~~~~e~~~~~------~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 196 (208)
....++...+ ..+...++ ...++.+|..+||.+++.+. |++|...+.++..++
T Consensus 384 P~l~~lvd~rh~s~~~vYGsVyaI-ad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 384 PTLGYLVDPRHVSGFNVYGSVYAI-ADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhhHHhcchhhccccceeeeHHHH-HHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 6666665433 33466677 57788999999999999987 888887777766655
No 219
>PRK11462 putative transporter; Provisional
Probab=98.25 E-value=5.3e-05 Score=62.94 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
...+....++.++.+++.+++++++||+|+|+.+..+..+..+..++..+.+ +...+.+.-++.|++.+...+..++.
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888899999999999999999987765554444333333332 23334445566777777766777788
Q ss_pred HHhhcC-----CchhhhHH--hHHHHHHHHHHHHHHHHHHHhh
Q psy2964 145 VLECVG-----PKWRTFAM--TFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 145 ~~e~~~-----~~~r~~~~--~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
++|..+ +.+|..++ +. .+...-+|..+++.+++.+
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~-~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAG-TLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 888765 22344333 43 3445556666666555543
No 220
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.25 E-value=7.4e-05 Score=59.12 Aligned_cols=141 Identities=12% Similarity=0.105 Sum_probs=101.0
Q ss_pred cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964 51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129 (208)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 129 (208)
.++.+..|-++ +..+.++..+...+.....++....+.+ +-.+|+..+...+++.++.+.+.+.+....+.- -++
T Consensus 230 WLP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~l 305 (395)
T COG2807 230 WLPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALL 305 (395)
T ss_pred HHHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHH
Confidence 36778888888 7888999999999999999999999998 556778878877777777776666543222221 489
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhh-hHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRT-FAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV 196 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~-~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~ 196 (208)
.|++.|..++....++.+-.+..+++ .-.++ .+....+=...+|.+.+++. +|+...+......+.
T Consensus 306 lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgm-aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 306 LGLGQGGAFPLALTLILLRSSDAAIAAALSGM-AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred HhCccchHHHHHHHHHHhhcCChHHHHHHHHH-hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999999999998887544444 44444 23222233456788888876 788776665554444
No 221
>PRK09848 glucuronide transporter; Provisional
Probab=98.24 E-value=3.6e-05 Score=63.56 Aligned_cols=120 Identities=14% Similarity=-0.001 Sum_probs=74.5
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh----CchHHH-HHHHHHHHHHHHHHh-hh----cc--HHHHH
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY----GRITAV-LGSHVVSFLGVALTP-FS----KD--VVLFS 124 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~-~~----~~--~~~~~ 124 (208)
+..++ +..+.+.+..+..+...+..++.|+++||. |||+.. .++.+...+..++.. .. ++ ....+
T Consensus 37 ~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (448)
T PRK09848 37 DVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAY 113 (448)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence 33455 677899999999999999999999999986 777654 455444444433322 11 11 12233
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHH-----HHHHHHHHHHHHHhh
Q psy2964 125 LSRFLTGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIF-----YTVSEVALPWIAYYL 180 (208)
Q Consensus 125 ~~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~-----~~~g~~~~~~~~~~~ 180 (208)
....+.+.+.+...+...++..++. ++++|.+..+. ...+ ..++..++|.+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~-r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 114 LTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAA-RGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445667667777666677777776 44678876554 3222 234455666666543
No 222
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.23 E-value=4e-06 Score=67.00 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=67.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--c--cHHHHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--K--DVVLFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~g~~~~~~~~~ 140 (208)
+..+.+...++..++..++.++.|+++||+|||+.+..+......+..+.... . +.+.......+.++..+...+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 338 (366)
T TIGR00886 259 SKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGS 338 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccch
Confidence 45667778888888999999999999999999988877776666655544432 2 4444444444444444555556
Q ss_pred HHHHHHhhcCCchhhhHHhH
Q psy2964 141 YYIIVLECVGPKWRTFAMTF 160 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~ 160 (208)
.+.++++..| ++++.++|+
T Consensus 339 ~~~~~~~~~~-~~~g~~~g~ 357 (366)
T TIGR00886 339 TFALVPHIFR-RATGAVSGL 357 (366)
T ss_pred hhhcchhhch-hhcccHHHH
Confidence 6777888886 688888887
No 223
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.00015 Score=59.65 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
....+.......+..++.+++.++.+|+|+|+++..+.++.+++..+..+.+ +.+..++..++.+++.+...+..++.
T Consensus 272 l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam 351 (467)
T COG2211 272 LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAM 351 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHH
Confidence 3444556666667777799999999999999999999999999998888765 67778888899999999999999999
Q ss_pred HHhhcC-----CchhhhH--HhHHHHHHHHHHHHHHHHHHHh
Q psy2964 145 VLECVG-----PKWRTFA--MTFPFLIFYTVSEVALPWIAYY 179 (208)
Q Consensus 145 ~~e~~~-----~~~r~~~--~~~~~~~~~~~g~~~~~~~~~~ 179 (208)
++|..+ +.+|..+ .+. .....=+|..++..+.++
T Consensus 352 ~~d~vDyge~~TG~R~eGi~~s~-~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 352 VADTVDYGEWKTGVRREGIVYSG-MTFFRKLGLALAGFIPGW 392 (467)
T ss_pred hcchhhHHHHHhCCCchhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 998863 3333333 333 333334455555544444
No 224
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.10 E-value=0.00024 Score=57.24 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=83.3
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-----chHHHHH-HHHHHHHHHHHHhhh-----c-------
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-----RITAVLG-SHVVSFLGVALTPFS-----K------- 118 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~------- 118 (208)
.|+++ .....+...++..+.. ...+.+|+.||+.+ ||..+++ +......+..+..++ .
T Consensus 8 vEL~v---pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 8 VELGV---PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred HHhcc---HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 44554 3445566666655554 46889999999999 7776654 444444444443332 2
Q ss_pred cH----HHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 119 DV----VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 119 ~~----~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
+. ........+.|++.+.......++++|..|+++|+++.++.|. ...+|.+++..+.+.+.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~-Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWV-MLIVGIIVSAIVFGRLL 149 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 12 1333556889999999999999999999999999999999655 66688888776666543
No 225
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.06 E-value=0.00045 Score=56.05 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=93.4
Q ss_pred HHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHH
Q psy2964 79 GSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAM 158 (208)
Q Consensus 79 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~ 158 (208)
.++...++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+.. ...++|+-...|+++--++.
T Consensus 53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vt 131 (412)
T PF01770_consen 53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVT 131 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHH
Confidence 44566677789999999999999999999999999999999999999999999998875 67788888888887777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 159 TFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
+. .-....+|..++..++-.+. +++...++......++++..+++|.
T Consensus 132 s~-~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 132 SY-TRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66 33344455455544444333 4555656655555556666666664
No 226
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.03 E-value=0.00011 Score=59.65 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=73.1
Q ss_pred ccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH--HHHHH-hhh----ccHH-HHHHHHHHH
Q psy2964 59 DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL--GVALT-PFS----KDVV-LFSLSRFLT 130 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~--~~~~~-~~~----~~~~-~~~~~~~l~ 130 (208)
.++ +..+.|.+.++..+...+.+++.|.++||+|.|+.++.......+ +.+.. .+. .|.+ ..+++-...
T Consensus 38 ~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l 114 (412)
T PF01306_consen 38 AGL---SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL 114 (412)
T ss_dssp H------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred cCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 678899999999999999999999999999977776654433322 22111 111 2322 222333444
Q ss_pred hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Q psy2964 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIV 196 (208)
Q Consensus 131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~ 196 (208)
|+......+..-+++.+....+.-.. |- .=....+|..++..++|.+- +-...+++....+++
T Consensus 115 ~~~f~~~~~~~Ea~~er~sr~~~feY--G~-~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~i 179 (412)
T PF01306_consen 115 GLVFNAGVPLSEAYAERVSRRNGFEY--GR-ARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAII 179 (412)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHSS-H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccchHHHHHHHHHHHHhcCCc--ch-HHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHH
Confidence 55555555676666665542211111 11 01133355556666666554 345567766555544
No 227
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.02 E-value=9.7e-07 Score=74.40 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=3.0
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-------------
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK------------- 118 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------- 118 (208)
..++-..|++ ++.+.+++.+.+-++..+..++..++.+|..|-+.+-.+.++++++++++++-|
T Consensus 26 lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~ 102 (539)
T PF03137_consen 26 LTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN 102 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence 5677888898 788999999999999999999999999998887888888888888887765410
Q ss_pred -------------------------------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHH
Q psy2964 119 -------------------------------------DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFP 161 (208)
Q Consensus 119 -------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~ 161 (208)
-+..+++++++.|+|....++...+|+-|..++++-+..+|+
T Consensus 103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi- 181 (539)
T PF03137_consen 103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI- 181 (539)
T ss_dssp -------------------------------------------------SSS----------------------------
T ss_pred cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh-
Confidence 124566788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy2964 162 FLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~~ 180 (208)
......+|..+|.++++..
T Consensus 182 ~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 182 LYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp -------------------
T ss_pred hhHHhhccHHHHHHHHHHH
Confidence 5557778888877777653
No 228
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.00 E-value=2.1e-05 Score=49.17 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=66.3
Q ss_pred hhhhhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHH
Q psy2964 46 EELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLF 123 (208)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (208)
..|.+.+|..+++.++ +..+.+++.+..++|+.+|++...++.++..+++.+..+.+...++.+.+++.++.+.+
T Consensus 9 FayTplLP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHhHhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4456667788888888 78899999999999999999999999999888999999999999999999998887655
No 229
>KOG2532|consensus
Probab=97.97 E-value=7.8e-05 Score=61.89 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc---------hHHHHHHHHHHHHHHHHHhhhcc--H-HHHHHH---HHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGR---------ITAVLGSHVVSFLGVALTPFSKD--V-VLFSLS---RFL 129 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~---~~l 129 (208)
+-...|+..++..+.+.+..+++|.++||.-+ |..-.++....+++.+..++.+. . ..+... -.+
T Consensus 292 ~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~ 371 (466)
T KOG2532|consen 292 DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL 371 (466)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH
Confidence 45678999999999999999999999998855 33444555555555555666542 2 122222 222
Q ss_pred HhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHH
Q psy2964 130 TGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA------DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~ 199 (208)
.|+..+ ..+..-.. .+++-+..+|+ .+....++..++|.+.+.+. .|+++|++.+++.++..+
T Consensus 372 ~g~~~~------Gf~~~~~~~apq~a~~l~g~-~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 372 SGFNIS------GFYKNHQDIAPQHAGFVMGI-INFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI 441 (466)
T ss_pred cccchh------hhHhhhhhccchHHHHHHHH-HHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence 222222 22333333 67788888888 67788888999999888775 799999998887777443
No 230
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.00025 Score=58.47 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCchH-HHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVAD----RYGRIT-AVLGSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVG 133 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~ 133 (208)
+....+.+..+.-+--++.-|+.|.++| ||||++ -++++.+..++.+.++-.+++ .....+.-.+.+++
T Consensus 46 s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~ 125 (467)
T COG2211 46 SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLG 125 (467)
T ss_pred cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHH
Confidence 5556666666666666788899999999 577754 556666777777776666542 33344455677888
Q ss_pred hhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHHHH-HH
Q psy2964 134 HFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVGLI-VA 201 (208)
Q Consensus 134 ~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~~~-~~ 201 (208)
.........++.+|+. ++++|.+..+. ...+..+|..+...+... .. +|+....+.+++.++.++ ++
T Consensus 126 YT~vniPy~al~~~iT~d~~ER~~l~s~-R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~ 204 (467)
T COG2211 126 YTLVNIPYGALGPEITQDPQERASLTSW-RMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF 204 (467)
T ss_pred HHheeCchhhcchhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999996 58889988887 666666665554333322 21 567666666666665443 44
Q ss_pred hccCC
Q psy2964 202 IFTPE 206 (208)
Q Consensus 202 ~~~pe 206 (208)
+..+|
T Consensus 205 ~~v~E 209 (467)
T COG2211 205 FNVKE 209 (467)
T ss_pred HHhhc
Confidence 44444
No 231
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00032 Score=56.35 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=91.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+..+.+...+.+..+.++|.++..++..|+-..+.+.+..++..+.++..+++++.. -+.+-++.|+..+..+|...+.
T Consensus 270 ~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPTIfsl 348 (422)
T COG0738 270 NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPTIFSL 348 (422)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 566778889999999999999999999999999999999988888888888888844 3445678888999999999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
..+..|.+. ..+-++ -....+|+.+.|.+.+++.
T Consensus 349 al~~l~~~t-s~~s~~--l~maivGGAiiP~l~G~i~ 382 (422)
T COG0738 349 ALKNLGEHT-SVGSGL--LVMAIVGGAIIPPLQGVIA 382 (422)
T ss_pred HHhccCccc-ccccee--eeeheecchHHHHHHHHHH
Confidence 999998433 333222 2355578888888888876
No 232
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.75 E-value=0.0017 Score=55.35 Aligned_cols=108 Identities=13% Similarity=-0.049 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFS--KDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
..++....+.++..+++.+.|.+..+++| |+.++++.+++.+++-+++.. +|.......-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 35677777888999999999999988877 555567776666554444433 455555677789999988887777777
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHH
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWI 176 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 176 (208)
..-..|++.-+.+.++ ......+|+.++..+
T Consensus 430 ~ql~~p~~~ig~a~gL-~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGL-TGSIRSIGGSIGYAI 460 (599)
T ss_pred eEeeeCchHHHHHHHH-HHHHHHHhhHHHHHH
Confidence 7777899999999988 556777777666544
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.72 E-value=0.00088 Score=55.32 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=93.4
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-----chHHHHHHHHHHHHHHHHHhhhc----cHHHHHH
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-----RITAVLGSHVVSFLGVALTPFSK----DVVLFSL 125 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 125 (208)
+.+++++ +..+.+...++..+.. ...++.|.++|-+. ||+-++++.++..++...++..+ +.....+
T Consensus 16 l~~~l~l---s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 16 LKDDLGL---SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHcCC---CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 4445565 4445555544444443 45788999999773 66666667766655555444432 4555556
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhc--CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HH
Q psy2964 126 SRFLTGVGHFNAFIFYYIIVLECV--GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LI 199 (208)
Q Consensus 126 ~~~l~g~~~~~~~~~~~~~~~e~~--~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~ 199 (208)
+-++..++........-+...|.. .++.|+...+.+ .....+|.+++..+++.+. ++++.|.+.+.+..+. +.
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~-~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFV-WGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 677888888888888999999987 333367777774 3466678888877777665 6777777766554443 33
Q ss_pred HHhccC
Q psy2964 200 VAIFTP 205 (208)
Q Consensus 200 ~~~~~p 205 (208)
..+..+
T Consensus 171 ~~~~~~ 176 (433)
T PF03092_consen 171 ALFLLE 176 (433)
T ss_pred HHHhhh
Confidence 344444
No 234
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.67 E-value=0.0051 Score=51.58 Aligned_cols=113 Identities=16% Similarity=0.079 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCc--hH----H-HHHHHHHHHHHHHHHhhh---------ccHHHHHHHHHHHh
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGR--IT----A-VLGSHVVSFLGVALTPFS---------KDVVLFSLSRFLTG 131 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r~----~-l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g 131 (208)
-.++.+++..+-.++.+++.+++=.|.+| |. . +.+++++.+++...+.+. .+.++++..-++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 36777888888777778877777566532 21 1 556777777766554331 25667778888999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
+|.-...|...+.+++..|++.|++.+|..+.....+|..++..++...
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999943323356666665555544
No 235
>KOG4686|consensus
Probab=97.64 E-value=4.8e-06 Score=63.83 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPF---SKDVVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+..++.++|...+.+.++++|++.| |+|-|...++-+....++..+.+. .+.+|.+.++|++.|+|.-..-...+.
T Consensus 80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~ 159 (459)
T KOG4686|consen 80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK 159 (459)
T ss_pred eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc
Confidence 4556778899999999999999999 568887777777777777665543 578999999999999988777788889
Q ss_pred HHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVAL 173 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 173 (208)
|+.-++..|+-+.++|+ ..+...+|...-
T Consensus 160 yav~wFKGKELn~vfGl-qlSvAR~GstvN 188 (459)
T KOG4686|consen 160 YAVYWFKGKELNFVFGL-QLSVARLGSTVN 188 (459)
T ss_pred eeEEEecCccccchhhH-HHHHHHhhceee
Confidence 99999999999999999 555666776553
No 236
>KOG2816|consensus
Probab=97.59 E-value=0.0062 Score=50.65 Aligned_cols=119 Identities=12% Similarity=0.123 Sum_probs=95.2
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHH-HhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILS-WVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHF 135 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 135 (208)
..+++ +....+...+.......++.++.. .+...+|-|+.+..|++...+..++.++.++.|.++....+.++..
T Consensus 270 ~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~- 345 (463)
T KOG2816|consen 270 AKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG- 345 (463)
T ss_pred eecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-
Confidence 34555 456667666666666677777666 7788999999999999999999999999999998888887777664
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
...+...+.++.+.++++++++.++ .+....+...++|.+-+.+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~-is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGI-ISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhH-HHHHHHHhhhhhHHHHHHH
Confidence 4458889999999999999999999 6777777777777666554
No 237
>KOG3626|consensus
Probab=97.59 E-value=0.00015 Score=62.61 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=120.1
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--------------
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-------------- 117 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------- 117 (208)
..++-+.|++ ++.+.+++.+.+-+++.+...+..+...|.-|-+.+-++.+++++++++..+.
T Consensus 120 IttiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 120 ITTIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 3445556776 56678999999999999999999999999999889999999999988877651
Q ss_pred ------c---------------------------c----HH-HHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHh
Q psy2964 118 ------K---------------------------D----VV-LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMT 159 (208)
Q Consensus 118 ------~---------------------------~----~~-~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~ 159 (208)
+ . ++ .++++.++.|+|....++...+|+=|....++-+..+|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 0 0 22 45577899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 160 FPFLIFYTVSEVALPWIAYYLA----------------------DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 160 ~~~~~~~~~g~~~~~~~~~~~~----------------------~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
+ ......+|.++|.+++++.. .|+.-|++.+.+.++..+.++++|.
T Consensus 277 i-~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 277 I-LYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred H-HHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9 56677888888888877652 3555677777777776666666664
No 238
>KOG2533|consensus
Probab=97.57 E-value=0.0012 Score=55.25 Aligned_cols=110 Identities=7% Similarity=-0.025 Sum_probs=70.9
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCchHHHHHHHHHHHHHHH-HHhhhccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADR----YGRITAVLGSHVVSFLGVA-LTPFSKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+..+.+.+...+.++.+++.+++|+++|| ..+|..+.....+...... ....................+.....+
T Consensus 307 s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (495)
T KOG2533|consen 307 SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAI 386 (495)
T ss_pred ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHH
Confidence 45566777888999999999999999999 6777776666666555543 333333333333334444455566667
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP 174 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~ 174 (208)
+.....++....+.|..........+.+.+..++|
T Consensus 387 ~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~ 421 (495)
T KOG2533|consen 387 IALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG 421 (495)
T ss_pred HHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence 88888888887777766554434444444444443
No 239
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.48 E-value=0.00031 Score=43.36 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=43.6
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVV 106 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 106 (208)
.+...++.++ +..+.+.+.++..+...++++++|.++||+|+++.++.....
T Consensus 23 l~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 23 LPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445555666 788999999999999999999999999999999988776554
No 240
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.46 E-value=0.014 Score=47.76 Aligned_cols=124 Identities=12% Similarity=0.018 Sum_probs=67.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh-----hhccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP-----FSKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....++.......+..++..+.+.+.++.++++.+.....+..++..+.. ..++++...+..++.+++.+...+
T Consensus 252 s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p 331 (413)
T PRK15403 252 TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP 331 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH
Confidence 455667776667777788888888776544443333222222222222221 123343455677778888777766
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVIT 190 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~ 190 (208)
......- .-....++++.++ .+.....+...++..++++. +-.+.+...
T Consensus 332 ~~~~~al-~~~~~~~G~a~a~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 382 (413)
T PRK15403 332 TLFRFTL-FSNNLPKGTVSAS-LNMVILMVMAVSVEIGRWLWFNGGRLPFHLL 382 (413)
T ss_pred HHHHHHh-ccCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 6664332 1122246777776 45455556666666766664 333444443
No 241
>KOG3098|consensus
Probab=97.45 E-value=0.0024 Score=52.76 Aligned_cols=103 Identities=10% Similarity=-0.094 Sum_probs=83.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q psy2964 73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK 152 (208)
Q Consensus 73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 152 (208)
+++.+....+.+++++.+.|+.|+|+.+.++............. .|-+.+++...+.|+|.+..+.....|++|-.+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67778888999999999999999999999999988877665555 45666888999999999998888999999999999
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHH
Q psy2964 153 WRTFAMTFPFLIFYTVSEVALPWIA 177 (208)
Q Consensus 153 ~r~~~~~~~~~~~~~~g~~~~~~~~ 177 (208)
++.+..++.|+ ....+.++|..+.
T Consensus 135 tie~Nisi~Wa-i~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWA-IGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHH-HHHHHHHhhhHhh
Confidence 99999888555 3334455554443
No 242
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.41 E-value=0.0029 Score=51.07 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh--c-------cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc---hhhhHHhHHHHHH
Q psy2964 98 TAVLGSHVVSFLGVALTPFS--K-------DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK---WRTFAMTFPFLIF 165 (208)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~---~r~~~~~~~~~~~ 165 (208)
+++.++.++..+++.+..++ + +.+.++++-.+.++|.|..=+...++.+|.++++ +|.....+ +-.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~-fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW-FYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH-HHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH-HHHH
Confidence 46778888888888774443 1 2357788888999999999999999999999766 34445555 4557
Q ss_pred HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy2964 166 YTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAI 202 (208)
Q Consensus 166 ~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 202 (208)
..+|..+++....++. +|.+.|.+.++..+++++...
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 7788888887777776 888888888777766555443
No 243
>KOG2615|consensus
Probab=97.39 E-value=0.0012 Score=52.83 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=98.8
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 134 (208)
..+++ ++.++|...+...+.+.+.+....+..||.. -+-.+..++.++.=..++....+....+..+-.+-.+..
T Consensus 290 ~rfg~---ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 290 GRFGY---SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST 366 (451)
T ss_pred CccCC---ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 34454 5667777777778888888888888888887 666777776666666666677777777888888888888
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADW 183 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w 183 (208)
+...++...++....|.++|+..+|+ ......++-.+||.+++.+..|
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi-~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGI-FRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHhhhhhhheeEEE
Confidence 88889999999999999999999999 6668889999999999876533
No 244
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.35 E-value=0.0046 Score=50.17 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH-HHHHHhhhcc--HH-HHHHHHHHHhhhhhhHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL-GVALTPFSKD--VV-LFSLSRFLTGVGHFNAFIF 140 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~l~g~~~~~~~~~ 140 (208)
++...+...++..+..++.+++.|.++|+.|+|+..........+ +.+++.+.++ ++ .....-.+...+.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 345667778888888899999999999999988776655444444 4444555543 44 3444556777777777888
Q ss_pred HHHHHHhhcCCchhhhHHhHHHHHHH
Q psy2964 141 YYIIVLECVGPKWRTFAMTFPFLIFY 166 (208)
Q Consensus 141 ~~~~~~e~~~~~~r~~~~~~~~~~~~ 166 (208)
..+++.+..++++-++.-++.+..++
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gy 161 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGY 161 (438)
T ss_pred hhhHhhhhcCccccCccccccccccc
Confidence 99999999998888877777666544
No 245
>PTZ00207 hypothetical protein; Provisional
Probab=97.28 E-value=0.015 Score=49.93 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhh---h------hCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 72 TRSIFFLGSLLGGFILSWVAD---R------YGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~l~d---r------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
+++++.+++.+|.+..|.+.. | +.|--.+.+..+ +.++.+++.+.-....+.+..++.|++.|...++..
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 678899999999999998872 1 222223333333 555555555553336788999999999999999999
Q ss_pred HHHHhhcCCchhhhHHhHHHHHHHHHHHHHH-HHHHHhhh-------------h---hHHHHHHHHHHHHHHHH
Q psy2964 143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVAL-PWIAYYLA-------------D---WQWISVITIFPLIVGLI 199 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~-~~~~~~~~-------------~---w~~~~~~~~~~~~~~~~ 199 (208)
..++|+|. |+-++-..+ ......+|..+- ..+.+.+. | ++..|++.+..++.+.+
T Consensus 475 ~i~selFg-k~~g~~yN~-~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~ 546 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNF-CFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFI 546 (591)
T ss_pred HHHHHHhc-cchHHHhhH-HhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence 99999999 888888777 344555665553 33444332 1 56677777666655444
No 246
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.24 E-value=0.042 Score=45.89 Aligned_cols=113 Identities=8% Similarity=-0.028 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHHHHhH-HHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--c-------------------------
Q psy2964 67 SNLAITRSIFFLGSLLG-GFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--K------------------------- 118 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~------------------------- 118 (208)
....++-+...+...+. .++.+++++|++|++.+-...........+.++. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45666666666666555 8899999999999999887776666665554443 1
Q ss_pred ----cHHHHHHHHHHHhhhhhhHHH-HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 119 ----DVVLFSLSRFLTGVGHFNAFI-FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 119 ----~~~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
+.|...+.-...-+-.....+ .-|.+.+|.+..++-.+..++ ++.+.++|..+++.+..++
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l-~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYAL-FGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 012222222333344444454 789999999999999999988 7888889999988777665
No 247
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.19 E-value=0.0096 Score=49.23 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=97.2
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-h---------ccHHHHHHHHHHHhhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-S---------KDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~g~~~ 134 (208)
++...+....+..++..+|..++....-++.-|+++.++.++.++..+.... . ++.+..+.--++..+..
T Consensus 253 s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~ 332 (433)
T PF03092_consen 253 SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG 332 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence 3445666667778888889999988888888899988888877766553221 1 12222233345666666
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--------h---hHHHHHHHHHHHHHHHHHHhc
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--------D---WQWISVITIFPLIVGLIVAIF 203 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~---w~~~~~~~~~~~~~~~~~~~~ 203 (208)
...+.....+++|..|+..-++..++ .....++|..++..++..+. + -.+..++..+..++.+...++
T Consensus 333 ~i~~mP~lvl~a~lcP~G~Egt~yal-l~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 333 MIAFMPSLVLAARLCPKGSEGTVYAL-LASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 66677778899999999999999999 67778888888777777664 1 223444555555556666666
Q ss_pred cCC
Q psy2964 204 TPE 206 (208)
Q Consensus 204 ~pe 206 (208)
+|+
T Consensus 412 Lp~ 414 (433)
T PF03092_consen 412 LPP 414 (433)
T ss_pred cCC
Confidence 665
No 248
>KOG4332|consensus
Probab=97.06 E-value=0.0026 Score=48.82 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=62.8
Q ss_pred eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 134 (208)
+.+.+++ .+.+++.+...-.-..++...+.|.+.||.|||+.-+.-++...++ ++.-.++++-.++++|.+-|+..
T Consensus 63 LYstYgF---gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaT 138 (454)
T KOG4332|consen 63 LYSTYGF---GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIAT 138 (454)
T ss_pred eehhcCc---cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHH
Confidence 3444554 3455555544444556778888999999999999876666555554 34666788999999999999999
Q ss_pred hhHHHHHHHHH
Q psy2964 135 FNAFIFYYIIV 145 (208)
Q Consensus 135 ~~~~~~~~~~~ 145 (208)
+..+..--++.
T Consensus 139 sLLFSaFEsWl 149 (454)
T KOG4332|consen 139 SLLFSAFESWL 149 (454)
T ss_pred HHHHHHHHHHH
Confidence 88877665554
No 249
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.60 E-value=0.035 Score=45.23 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHH-----HHHHhhhccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLG-----VALTPFSKDVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
++..+....|++|..++.--...+ |+ |+..+.+.+-..-. ..+.-+.++.|..++.-+..|+..|..+...
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456677788888877765433221 33 33333322222211 1223335788888889999999999999999
Q ss_pred HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
...+.|-.|+++|-.++|. .+++-.+|..++.+++..+.
T Consensus 357 F~~I~~~~~~~~REFslg~-vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGA-VSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHhcCCHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999 78788888888877777664
No 250
>KOG0637|consensus
Probab=96.48 E-value=0.0042 Score=50.88 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=74.3
Q ss_pred HHHHHHHHhHHHHHHHhhh----hhCchHHHHHH-HHHHHHHHHHHhhhccH-----------------HHHHHHHHHHh
Q psy2964 74 SIFFLGSLLGGFILSWVAD----RYGRITAVLGS-HVVSFLGVALTPFSKDV-----------------VLFSLSRFLTG 131 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~g 131 (208)
...-+...+.+++.|..+| |||||+.+++. .....++.+++++++.. ...++...+.-
T Consensus 74 ~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD 153 (498)
T KOG0637|consen 74 LCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLD 153 (498)
T ss_pred cccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHH
Confidence 3344556788899999999 78988776654 44455555566654322 22333344445
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhh-HHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTF-AMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++........-+++.|+..++.|.+ +.+. +....++|+.+|..++.+..
T Consensus 154 ~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~-f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 154 VANNTLQGPCRALLADLARGDAKKTRANSV-FSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred hhhhhhhhhHHHHHHHhccChhhhhccchh-HHHHHHhcceeeeecccccC
Confidence 5666677888899999998877777 8877 78888999999988887653
No 251
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.43 E-value=0.27 Score=40.71 Aligned_cols=114 Identities=20% Similarity=0.147 Sum_probs=77.7
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---c-------cHHHHHHHHHHHhhhh
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---K-------DVVLFSLSRFLTGVGH 134 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~l~g~~~ 134 (208)
+....+..-+...+....+.+.+.++.+|+|..+.=.++......+..+...+ + +...++.+-.+.-+|.
T Consensus 291 s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GL 370 (432)
T PF06963_consen 291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGL 370 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence 55667888888888899999999999999999998888877666555443321 1 1222333333333444
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (208)
=....+...++.|..|+++|+...|. ......+...+...+...
T Consensus 371 W~fDL~~~qi~Qe~V~~~~Rg~v~gv-q~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 371 WSFDLAVTQIMQENVPESERGAVSGV-QNSLQSLFELLSFVLTII 414 (432)
T ss_pred HhhhHHHHHhhcccCCHHHhhHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 44457778888999999999999988 554555555554444433
No 252
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.40 E-value=0.19 Score=41.99 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCch---H----HHHHHHHHHHHHHHHHhhh----------ccHHHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRI---T----AVLGSHVVSFLGVALTPFS----------KDVVLFSLSRFL 129 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~----~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l 129 (208)
....+.++...+..++.+++..++-.|.++| + =+-++..+.+.+.++.... .+.++++..-++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 3467788888888888898888888885554 1 1234444444444333322 256788888899
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178 (208)
Q Consensus 130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 178 (208)
++++.=...|....+++...|++-.+..++. +-.....|+.++..++.
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~-wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAM-WFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHhhceecc
Confidence 9999999999999999999999999999998 66677777777665555
No 253
>PRK03612 spermidine synthase; Provisional
Probab=95.98 E-value=0.57 Score=39.88 Aligned_cols=114 Identities=6% Similarity=-0.032 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHH-HH-HHHHHHHhhhc----cH-HHHHHHHHHHhhhhhhH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHV-VS-FLGVALTPFSK----DV-VLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~-~~~~~~~~~~~----~~-~~~~~~~~l~g~~~~~~ 137 (208)
+....+.+.+++++|..+|+.+.+++.++.-|+....-..+ +. .++..+..... .. ..++...++.++..|+.
T Consensus 48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999998887644333332221111 10 11111111111 11 11223345667777777
Q ss_pred HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
+|....+..+.... +-+...|-.+. ...+|..+|.++.+++
T Consensus 128 ~Pl~~~~~~~~~~~-~~g~~~g~ly~-~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 128 IPLLMRILQRIRDQ-HLGHNVATVLA-ADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHhcccc-chhhhhhhhHh-HHhHHHHHHHHHHHHH
Confidence 77766666554321 12233334233 4456666666665554
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.86 E-value=0.26 Score=40.34 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC 148 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 148 (208)
.+.+.-+-.+...+..+.+.+..+|..-+.=+....++..++.++.+++++.+.-+++-.+.+++.|..-.....+ +..
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence 3444445555667777788888888875555566666777788888888999988888899999988886666565 445
Q ss_pred cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q psy2964 149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPL 194 (208)
Q Consensus 149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~ 194 (208)
+++. .++- ++.+.+.++++|+..-..+. +-|..+.+...+.
T Consensus 140 y~~~----~l~~-wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp 184 (402)
T PF02487_consen 140 YGKS----SLSA-WSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLP 184 (402)
T ss_pred cCcc----cccc-ccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 5542 2333 56666666666655444333 3344555544433
No 255
>KOG1330|consensus
Probab=95.75 E-value=0.027 Score=46.43 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhC-------chHHHHHHHHHHHHHHHHH----hh-hccHHHHHHHHHHHhhh
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYG-------RITAVLGSHVVSFLGVALT----PF-SKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-------rr~~l~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~g~~ 133 (208)
.....++..++..+..+|.+++|.++||+- |.++=.+...+.+..++.+ .. ..+...+....++.|..
T Consensus 282 ~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~ 361 (493)
T KOG1330|consen 282 HNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGET 361 (493)
T ss_pred cccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344556678888899999999999999842 2222222222222222111 11 12222222333344432
Q ss_pred hh-hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 134 HF-NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 134 ~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
.. ...+....+..|..|++.|..+.++-......+|-.-+|.+.+.+.
T Consensus 362 ~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGils 410 (493)
T KOG1330|consen 362 ISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILS 410 (493)
T ss_pred HHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHH
Confidence 22 2234455667888899999999998666666667666775656554
No 256
>KOG3098|consensus
Probab=95.70 E-value=1 Score=37.58 Aligned_cols=101 Identities=26% Similarity=0.373 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhh---hhhCchHHHHHHHHHHHHHHHHHhhh------------------ccHHHHHHHH
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVA---DRYGRITAVLGSHVVSFLGVALTPFS------------------KDVVLFSLSR 127 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 127 (208)
.+.......++..+++...+.++ +++||++.+..+..+..+..++..+. +++...++.-
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 33334444555666667777776 57899999999988888887765542 2355666777
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEV 171 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~ 171 (208)
++.|++-+......+.++.... ++.|..+.++ .-.-..++..
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi-~kfyq~~~s~ 402 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSL-FKFYQSVASC 402 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHH-HHHHHHHHHH
Confidence 8999999999899999999999 6667777766 3433334433
No 257
>KOG1237|consensus
Probab=95.56 E-value=0.16 Score=43.60 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhc----------------------c---HH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSK----------------------D---VV 121 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~----------------------~---~~ 121 (208)
.+.-....+.-......+.+++++| .+||-+++.++.++..++..+...+. + ..
T Consensus 74 ~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~ 153 (571)
T KOG1237|consen 74 GAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLA 153 (571)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHH
Confidence 3444455555566677889999999 66999999999998888865443320 0 12
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhcC---Cchhh---hHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHH
Q psy2964 122 LFSLSRFLTGVGHFNAFIFYYIIVLECVG---PKWRT---FAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIF 192 (208)
Q Consensus 122 ~~~~~~~l~g~~~~~~~~~~~~~~~e~~~---~~~r~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~ 192 (208)
.+....-+..+|.|+.-++...+-+|.++ ++.+. ..+.. +......|..++..+..+.. +|.+.|.+..+
T Consensus 154 ~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW-~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~ 232 (571)
T KOG1237|consen 154 VLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW-FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTV 232 (571)
T ss_pred HHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH-HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHH
Confidence 44455567777888888999999999998 33222 33344 34455667777666666663 89988888766
Q ss_pred HHHHHHHH
Q psy2964 193 PLIVGLIV 200 (208)
Q Consensus 193 ~~~~~~~~ 200 (208)
...+++++
T Consensus 233 ~~~lai~i 240 (571)
T KOG1237|consen 233 LNALAILI 240 (571)
T ss_pred HHHHHHHH
Confidence 65554443
No 258
>KOG3762|consensus
Probab=94.09 E-value=0.057 Score=45.46 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=47.9
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH-HHHHHhhh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL-GVALTPFS 117 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~ 117 (208)
+..+..+.++ +..+.+.++..--+..+++.+++|+++||+-+|+.++++.++..+ ..+++.+.
T Consensus 34 l~vy~kQLGl---~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 34 LAVYFKQLGL---NPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HHHHHHHcCC---CHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 4556667777 788899999999999999999999999999887766665555444 44444443
No 259
>KOG1479|consensus
Probab=93.44 E-value=0.55 Score=38.36 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=69.2
Q ss_pred CchHHHHHHH-HHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---------hhccHHHHHHHHHHHhhhhh
Q psy2964 66 SSNLAITRSI-FFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---------FSKDVVLFSLSRFLTGVGHF 135 (208)
Q Consensus 66 ~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~ 135 (208)
++........ +++.-.+|.+.+.++-+.= ||...+... +-.+..-+.. ...+-+.+++...+.|+..|
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~-lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG 358 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVL-LRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG 358 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHH-HHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence 3445555566 8888888877777665543 333333322 2222211111 22455677788899999999
Q ss_pred hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964 136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 178 (208)
-...+...+..+..+++++..+-.+ .......|...|..++.
T Consensus 359 Yltsl~m~~aPk~v~~~e~e~aG~~-m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 359 YLTSLIMMYAPKQVKPSEKEAAGNL-MVFFLVGGLALGSLLSW 400 (406)
T ss_pred hHhhheehhcCCCCChHHHHHHHHH-HHHHHHHHHHHhhHHHH
Confidence 9999999999999988888776444 55555555555544443
No 260
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.31 E-value=2.6 Score=34.70 Aligned_cols=96 Identities=6% Similarity=-0.008 Sum_probs=70.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHH--HHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVL--GSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
.....|.+-++..+...++.+..|++..++.+..-+. ...++.+...+++...++.|...++-.+.+.......+...
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999999999977777744444 33444455556677788999888888777776667777777
Q ss_pred HHHHhhcCCchhhhHHhH
Q psy2964 143 IIVLECVGPKWRTFAMTF 160 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~ 160 (208)
.-++.....+.-+...|+
T Consensus 363 ~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGI 380 (412)
T ss_pred HHHHHhccccceeeeeee
Confidence 777777776766666555
No 261
>KOG3810|consensus
Probab=93.03 E-value=0.36 Score=38.71 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=83.8
Q ss_pred HHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHH
Q psy2964 85 FILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLI 164 (208)
Q Consensus 85 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~ 164 (208)
.+.=.+.|..--||+++.-.+.......+..+.++.+.+=+.-+..|...+.. ...++|+-+..+++.+.++.+.+-+
T Consensus 60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yqrvt~y~Ra- 137 (433)
T KOG3810|consen 60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYKRVTGYCRA- 137 (433)
T ss_pred HHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHHHHHHHhHH-
Confidence 33346789888899998888877777788888899998888999999887776 6778999999999999998887433
Q ss_pred HHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964 165 FYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGLIVAIFTPE 206 (208)
Q Consensus 165 ~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe 206 (208)
..-.|...+..++-.+. ++...-++......++.+..+++|.
T Consensus 138 A~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~ 184 (433)
T KOG3810|consen 138 AFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR 184 (433)
T ss_pred HHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence 44455555555554443 3333333443344445555555554
No 262
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=92.55 E-value=2.8 Score=32.26 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHH----HHHHHHHHHHHHhh-h----ccHHHHHHHHHHHhhhhhhH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLG----SHVVSFLGVALTPF-S----KDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~----~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~g~~~~~~ 137 (208)
.......++..|..+|.+..|+... ++-||+-+.. +.++..++.+..+. . .+...+.+..++.|++.=+.
T Consensus 142 ~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~Wgi 221 (267)
T PF07672_consen 142 IIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGI 221 (267)
T ss_pred hhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 3456667788888888888888875 6677776552 23333333332111 1 13556677778888776555
Q ss_pred HHHHHHHHHhhc--CCchhhhHHhHHHHHHHHHHHHH
Q psy2964 138 FIFYYIIVLECV--GPKWRTFAMTFPFLIFYTVSEVA 172 (208)
Q Consensus 138 ~~~~~~~~~e~~--~~~~r~~~~~~~~~~~~~~g~~~ 172 (208)
.+.......|.- .|++- |+.++..|++|.+.
T Consensus 222 Q~ViL~lPhEyK~~~pk~i----g~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 222 QGVILNLPHEYKGYNPKKI----GIQFGLIWGFGYIF 254 (267)
T ss_pred hHHHhcChhhhcCCCccee----hhHHHHHHHHHHHH
Confidence 555544445542 33333 34455566666544
No 263
>KOG3880|consensus
Probab=91.08 E-value=1.7 Score=34.49 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchH------HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRIT------AVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAF 138 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 138 (208)
...+..|.+..|.+|..+..- +-|+=+-+ .+..--++..+...+..+.++++..++..+.-|+-.|..+
T Consensus 286 ~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasY 360 (409)
T KOG3880|consen 286 KDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASY 360 (409)
T ss_pred hhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHH
Confidence 445677888888888765432 11221212 2222233334444566778899999999999998888887
Q ss_pred HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2964 139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADW 183 (208)
Q Consensus 139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w 183 (208)
....--+.+-.++++|-.+++. ...+-.+|..++.+++..+.+|
T Consensus 361 VNTf~~i~~e~~pd~rEfamsa-vs~sDS~Gi~lA~~lalplh~~ 404 (409)
T KOG3880|consen 361 VNTFHNIHKETEPDVREFAMSA-VSISDSIGIFLAGLLALPLHNW 404 (409)
T ss_pred HHHHHHHhhcCCchHHHHhHhh-heecchhhHHHHHHHhccchhh
Confidence 7777777887889999999987 5666666766666665544343
No 264
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.07 E-value=6.4 Score=32.82 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHH--HHHHHHHHHHh---------hhccHHHHHHHHHHHhhhh
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSH--VVSFLGVALTP---------FSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~ 134 (208)
.......+++++=.+|..+..+.. .-++| ...+.+. ++..-..+++. ..++-+..++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 445666778888888888655431 11222 3322221 11222212221 1245566777889999999
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 178 (208)
|........+..+..++++|..+-.+ ...+..+|..+|..++.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~-~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGAL-MVIFLLVGLALGAVLSF 429 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999998888777555 56666666666655544
No 265
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=89.59 E-value=5.1 Score=33.93 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV 145 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 145 (208)
..|..-++..+...+.++..|++-.++.+- ..+-+..++.+...+++...+|.|...++-++.+.......++...-+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888899999999998777553 344444455555566777889999999999888888888888888888
Q ss_pred HhhcCCchhhhHHhH
Q psy2964 146 LECVGPKWRTFAMTF 160 (208)
Q Consensus 146 ~e~~~~~~r~~~~~~ 160 (208)
+.....+.-+...|+
T Consensus 379 A~~L~~~~~aLvFGi 393 (511)
T TIGR00806 379 ASSLSKELCALVFGI 393 (511)
T ss_pred HHHhcccceEEEEec
Confidence 888877777777666
No 266
>KOG2563|consensus
Probab=89.34 E-value=0.63 Score=38.54 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhh-h---ccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPF-S---KDVVLFSLSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~g~~~~~~~~~~ 141 (208)
...|+......++.++++.+.|.+.||... |..++.......++...... . ...+.++..-.+.|++.....|+.
T Consensus 301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig 380 (480)
T KOG2563|consen 301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIG 380 (480)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcc
Confidence 567888888889999999999999998865 44555555554444222111 1 122334444556676666667887
Q ss_pred HHHHHhhc-CCchhhhHHhH
Q psy2964 142 YIIVLECV-GPKWRTFAMTF 160 (208)
Q Consensus 142 ~~~~~e~~-~~~~r~~~~~~ 160 (208)
.-+..|.. |..++ ...|+
T Consensus 381 ~ElgvE~TyPv~E~-tSsGl 399 (480)
T KOG2563|consen 381 FELGVETTYPVAEG-TSSGL 399 (480)
T ss_pred eeeeeeeccccCCc-cccee
Confidence 77877774 54443 33345
No 267
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=87.69 E-value=0.16 Score=43.27 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=0.0
Q ss_pred eeecccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHh---h-----------h
Q psy2964 55 RRRRDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTP---F-----------S 117 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~---~-----------~ 117 (208)
+-.+|++ +...++.+..+..+ +.++|.+++|++..|+. .|..+.+..+...++.++.. + .
T Consensus 332 lE~QF~~---sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~ 408 (539)
T PF03137_consen 332 LESQFGL---SASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVT 408 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCC---CHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeec
Confidence 3345565 45555555544444 66789999999999774 34444444444444332211 0 0
Q ss_pred ----------------------------------------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhH
Q psy2964 118 ----------------------------------------KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFA 157 (208)
Q Consensus 118 ----------------------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~ 157 (208)
+.+..+++..++.-+..+.........+-...|+++|+.+
T Consensus 409 ~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~A 488 (539)
T PF03137_consen 409 VPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFA 488 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchh
Confidence 0112233333344444444455555666677899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 158 MTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 158 ~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
+|+.+.+...+|.+-+|++-+.+.
T Consensus 489 lGv~~~~~rllg~IPgPIifG~ii 512 (539)
T PF03137_consen 489 LGVQWLIIRLLGFIPGPIIFGAII 512 (539)
T ss_dssp ------------------------
T ss_pred hhHHHHHHHhhcCcchHHHHhHHH
Confidence 999766777788888888877764
No 268
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=87.26 E-value=17 Score=30.84 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=68.7
Q ss_pred chHHHHHHHHHH-HHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---------cc-----------------
Q psy2964 67 SNLAITRSIFFL-GSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---------KD----------------- 119 (208)
Q Consensus 67 ~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~----------------- 119 (208)
.....+=....+ +..+......+++|+++|.+++-...........+.++. ++
T Consensus 58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 334444333333 445567788999999999998776666655555544432 01
Q ss_pred -----HHHHHHHHHHHhhhhhhHHH-HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 120 -----VVLFSLSRFLTGVGHFNAFI-FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 120 -----~~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
.|...+.-.+.-+-.....+ .-|.+.+|.++.++-.+..++ +..+..+|.++++.+...+.
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl-~g~ganigli~sG~~~~~~~ 204 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPL-FGLGANIGLIFSGQLTSYFS 204 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 01111111122222223333 468999999999999999888 77777788777766555543
No 269
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=86.66 E-value=17 Score=30.28 Aligned_cols=33 Identities=9% Similarity=-0.181 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q psy2964 119 DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK 152 (208)
Q Consensus 119 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 152 (208)
.++..++.-++.|++.+........+.+ .+|++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~ 137 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST 137 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence 3555666677888888888777777766 44544
No 270
>KOG3097|consensus
Probab=86.61 E-value=0.89 Score=36.20 Aligned_cols=74 Identities=7% Similarity=-0.010 Sum_probs=53.8
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV 149 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 149 (208)
...+.-+..+++.+.+..++|-|+++.++......... .=+-+.+..++..-...|++.+..+...-+|+++.-
T Consensus 66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 33445566777777999999999999887766544322 112256778888899999999988877777777664
No 271
>KOG3574|consensus
Probab=86.36 E-value=8.4 Score=31.76 Aligned_cols=99 Identities=16% Similarity=0.009 Sum_probs=53.8
Q ss_pred HHHHHHHH--hHHHHHHHhhh-----hhCchHHH------HHHHHHHHHHHHHH------hhhccHHHHHHHHHHHhhhh
Q psy2964 74 SIFFLGSL--LGGFILSWVAD-----RYGRITAV------LGSHVVSFLGVALT------PFSKDVVLFSLSRFLTGVGH 134 (208)
Q Consensus 74 ~~~~~~~~--~~~~~~g~l~d-----r~Grr~~l------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~ 134 (208)
+++.+++. --.+++.++.| |+|||+.- .+|+.+..++...- +-.++...+....++.-+..
T Consensus 68 a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnfla 147 (510)
T KOG3574|consen 68 AIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA 147 (510)
T ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHH
Confidence 33444443 34568889999 99999863 33333333322110 01133344434445555555
Q ss_pred hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964 135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL 173 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 173 (208)
+.=....-.+.-.+..+++-+.+. .+...+...|.+++
T Consensus 148 AtQDIAVDgwALtmLs~e~lgyaS-T~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 148 ATQDIAVDGWALTMLSRENLGYAS-TCQSVGQTAGYFLG 185 (510)
T ss_pred hhhhhhhhHHHHHhcCHhhcCchh-HHHHHHHhhhHHhh
Confidence 555556666777777888777764 33555555555444
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=85.18 E-value=19 Score=30.74 Aligned_cols=36 Identities=11% Similarity=-0.174 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWI 176 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 176 (208)
..-.+.-.+.++++++.+- .+.+++...|..++..+
T Consensus 138 AVDGWALT~Ls~~n~~~AS-TcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 138 AVDGWALTMLSPENVGYAS-TCQTVGQTAGYFLSFTV 173 (544)
T ss_pred eeehhhhhhcChhhcchHH-HHHHhHhhhhHHHHHHH
Confidence 3344555566788887773 44565666665555433
No 273
>KOG4332|consensus
Probab=84.40 E-value=18 Score=28.47 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhhh----c---cHHHHHHHHHHHhhhhhhHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPFS----K---DVVLFSLSRFLTGVGHFNAF 138 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~l~g~~~~~~~ 138 (208)
--|.+.+.++++.++|+-++.++..|-..| +.+.+..++......+.... + +...-+++..+.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 357888899999999999998887655444 34445444444443332221 1 23333555666667788888
Q ss_pred HHHHHHHHhhcCCchhhhHHhH
Q psy2964 139 IFYYIIVLECVGPKWRTFAMTF 160 (208)
Q Consensus 139 ~~~~~~~~e~~~~~~r~~~~~~ 160 (208)
|...-.=.+..|.+.|+..+.+
T Consensus 363 PSimkmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNF 384 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhh
Confidence 9888888899999999988876
No 274
>KOG2325|consensus
Probab=84.00 E-value=1.1 Score=37.59 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIF 192 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~ 192 (208)
++.|.+.........++-+|...++.++...++ ++.....+..++|.+..... |.++...+.+.
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~-~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~ 462 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGV-FSISGSIARVVGPIFSTAIFTLSGPRPVWIILLC 462 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEE-EEeccchhhhhhHHHHhhhHHhcCccHHHHHHHH
Confidence 456666666667788899999999999999988 77788888888887776654 66655544433
No 275
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.39 E-value=5.7 Score=25.98 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHH
Q psy2964 70 AITRSIFFLGSLLGGFILSWVADRY-GRITAVLG 102 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~ 102 (208)
++-.+.=.++..+.....||+.||| |.+|.-++
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglI 78 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI 78 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3344555566667777788999987 45554333
No 276
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=81.55 E-value=2 Score=37.61 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=37.7
Q ss_pred cccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHH
Q psy2964 58 RDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVAL 113 (208)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~ 113 (208)
++++ +....+++.....+ +.+++.+++|+++||++ .|+.+.++.++..++.++
T Consensus 360 ~~g~---s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 360 QYGI---SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HcCC---cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 4555 56667777766665 56899999999999998 456666666666665443
No 277
>KOG0637|consensus
Probab=80.71 E-value=4.3 Score=33.92 Aligned_cols=76 Identities=9% Similarity=0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964 70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV 145 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 145 (208)
.|-..++.+...+.+...-++.+|+|-|+.+..+...+.++..+.+..++.+....-+...|+-.+....+.+..+
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~ 410 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGAL 410 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHH
Confidence 4556677777788899999999999977777777776777777777777777777777777754444433333333
No 278
>KOG3810|consensus
Probab=80.43 E-value=12 Score=30.44 Aligned_cols=93 Identities=5% Similarity=-0.045 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV 145 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 145 (208)
..|..-++..+.++++.+..|.+.-.|.|. ..+..+.+..+...+++..+++.|...++-.+.........++...-+
T Consensus 272 yNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i 351 (433)
T KOG3810|consen 272 YNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQI 351 (433)
T ss_pred hcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence 345666777788889999999998777665 345555556666666777778888777776666655555556666777
Q ss_pred HhhcCCchhhhHHhH
Q psy2964 146 LECVGPKWRTFAMTF 160 (208)
Q Consensus 146 ~e~~~~~~r~~~~~~ 160 (208)
++....+.-+...|+
T Consensus 352 A~nL~~e~~gLvFGi 366 (433)
T KOG3810|consen 352 ARNLSSELFGLVFGI 366 (433)
T ss_pred HHhhhhhhheeeeeh
Confidence 777777766666665
No 279
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=75.02 E-value=14 Score=24.03 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHH
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVS 107 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 107 (208)
.+.......++..++..+.+.+.|..|.+..+.......
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILA 127 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHH
Confidence 444555566666777777777777776665555444333
No 280
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=74.03 E-value=51 Score=27.55 Aligned_cols=42 Identities=29% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHH
Q psy2964 70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV 111 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 111 (208)
+.....-.+..++.++..|.+.||..|++++..+.+..-++.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 333444455677888889999999999999888766655543
No 281
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=73.15 E-value=1.5 Score=34.61 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=3.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHH---HHHH----------hhhccHHHHHHHHHHHhhhhhhH
Q psy2964 72 TRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLG---VALT----------PFSKDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~l~g~~~~~~ 137 (208)
...+++++=.+|..+.++..-+ ..+|+.... .+.=.+. .+++ ...++-+..++..++.|+..|..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~-s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWIL-SLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHH-HHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 3456788888888877764211 134444432 2222211 1111 11234456677788999999999
Q ss_pred HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964 138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 178 (208)
......+..+..++++|..+-.+ .......|..+|..++.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~-~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSV-MSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999998888776444 55555566666555443
No 282
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=72.36 E-value=61 Score=27.64 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=79.9
Q ss_pred ceeecccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---------cc----
Q psy2964 54 RRRRRDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---------KD---- 119 (208)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~---- 119 (208)
.+.+.+-+.........++=+...+ +..+..++..++.+++.|.+++-.-+.......+++++. ++
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~ 127 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS 127 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence 3334443322234445555555555 667788899999999999999887777766666666553 11
Q ss_pred -------------------HHHHHHHHHHHhhhhhhHHH-HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh
Q psy2964 120 -------------------VVLFSLSRFLTGVGHFNAFI-FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179 (208)
Q Consensus 120 -------------------~~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~ 179 (208)
-|...+.-...=+-.+.... .-+....|.+..++-.+..++ ++.+.+++..++..+..+
T Consensus 128 ~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~l-f~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 128 RDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPL-FGLGANISLLLSGEVTSW 206 (509)
T ss_pred HHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 02121211222222223323 567888999998888888888 787888888887777766
Q ss_pred hh
Q psy2964 180 LA 181 (208)
Q Consensus 180 ~~ 181 (208)
+.
T Consensus 207 ~~ 208 (509)
T COG3202 207 LS 208 (509)
T ss_pred Hh
Confidence 65
No 283
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=70.83 E-value=33 Score=23.96 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCchH
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRIT 98 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr~ 98 (208)
.-|.++..+.+.+.|++.+|..+++
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccc
Confidence 4577788899999999999988864
No 284
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=69.64 E-value=25 Score=25.57 Aligned_cols=23 Identities=13% Similarity=0.567 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCc
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGR 96 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Gr 96 (208)
.-|.+++.+++.+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 45778889999999999999986
No 285
>COG4769 Predicted membrane protein [Function unknown]
Probab=68.92 E-value=24 Score=25.10 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 133 (208)
.++.++..+.+...-++..++|+|..=+++. +..-++.+|..++.+.+++.+-.
T Consensus 80 Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgi------S~mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 80 FLYSFAGAILSTLFMYFLYQFGPKYLSLLGI------SVMGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEeeeeh------hhHHHHHHhHHHHHHHHHHHhcc
Confidence 4566677777778888899999887733333 22345667888888888776643
No 286
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.50 E-value=19 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhCchHHHHH
Q psy2964 72 TRSIFFLGSLLGGFILSWVADRYGRITAVLG 102 (208)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 102 (208)
.++.+.+++.+....+..+.-|+|||+.+-.
T Consensus 33 ~ns~yyfv~Il~atlfill~Ik~~~kwI~r~ 63 (277)
T COG3389 33 SNSVYYFVYILVATLFILLAIKLGRKWIFRG 63 (277)
T ss_pred cCceeeehhHHHHHHHHHhheeecceeeehh
Confidence 3466677777888888888999999987655
No 287
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=64.17 E-value=92 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHH
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSF 108 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 108 (208)
.++...++.+|.-.|.-+..-+.+ .|-+..+ ++.++..
T Consensus 452 ~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~~-~g~~~~~ 489 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVTAIKE-MGLTLFL-LGIVVTI 489 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH-HHHHHHH
Confidence 445555566666666666555533 5555443 3333333
No 288
>KOG1479|consensus
Probab=60.04 E-value=1e+02 Score=25.65 Aligned_cols=31 Identities=6% Similarity=-0.130 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q psy2964 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 120 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
+...++.-.+.+++.+......+...+++.+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~ 147 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPS 147 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCCH
Confidence 4445555677777777777666666666543
No 289
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=57.48 E-value=1.5e+02 Score=26.76 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHhhh----hhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHhhhhhhH
Q psy2964 85 FILSWVAD----RYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 85 ~~~g~l~d----r~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~ 137 (208)
.+++-++| .-||.+-+.++.++..++.+...+. +..+.+...-++.+++.++.
T Consensus 41 ~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ml 98 (704)
T TIGR01666 41 IIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIML 98 (704)
T ss_pred HHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34455665 3466677777777777777766654 44455555555555554443
No 290
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=55.01 E-value=1.6e+02 Score=26.30 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHH--HHHHHHHHHHH
Q psy2964 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-DWQW--ISVITIFPLIV 196 (208)
Q Consensus 120 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~--~~~~~~~~~~~ 196 (208)
.++.+.--++.+.+.........-+..+-.|++.|+...++ +....++|.++...+...-. .+++ .+.+.++..++
T Consensus 565 ~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (654)
T TIGR00926 565 ILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQAL-WLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVV 643 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Confidence 34444555666677666666666667777899999998888 66677778777765555433 3443 33334444444
No 291
>KOG3626|consensus
Probab=54.33 E-value=16 Score=32.65 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 126 SRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 126 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
..++.-+..+...+....++-...++++|..++|+.+.....+|.+-+|++-|++
T Consensus 592 ~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ 646 (735)
T KOG3626|consen 592 LFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAV 646 (735)
T ss_pred HHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhh
Confidence 3334444444444555666677889999999999977777888888899888776
No 292
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=52.90 E-value=1.7e+02 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHhhh----hhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhhhhH
Q psy2964 85 FILSWVAD----RYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 85 ~~~g~l~d----r~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~ 137 (208)
.+++-+.| ..||.+-+.++..+++++.+...+.. ..+.+...-.+.+++.++.
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ml 98 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILL 98 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34445555 34667778888888888877766654 4444545555555554444
No 293
>KOG1237|consensus
Probab=51.41 E-value=85 Score=27.37 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180 (208)
Q Consensus 120 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 180 (208)
.++++.=-++.|++.........-+..+-+|++-|+.++++ +....++|..++..+....
T Consensus 458 i~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al-~l~t~a~G~~lss~Lv~~v 517 (571)
T KOG1237|consen 458 ILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATAL-WLLTVAVGNYLSSVLVSLV 517 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45555666899999988888888888999999999999999 6778888888887777444
No 294
>KOG3880|consensus
Probab=51.04 E-value=32 Score=27.69 Aligned_cols=124 Identities=12% Similarity=0.007 Sum_probs=65.5
Q ss_pred HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh
Q psy2964 75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR 154 (208)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r 154 (208)
.-.+...+..+.+....||+---+=+.+..++.+.+.++.+++++.+.-+.+-.+..++.|..-.. ..-.+..+++..
T Consensus 70 aDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiT-FL~lss~Y~~~~- 147 (409)
T KOG3880|consen 70 ADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEIT-FLALSSRYPSIV- 147 (409)
T ss_pred hhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceee-hhhhhccCCCce-
Confidence 334455566666777787654333344455666677777888888888777777777777665322 233333333322
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHH-HHHHHHHHHHHHhcc
Q psy2964 155 TFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVI-TIFPLIVGLIVAIFT 204 (208)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~-~~~~~~~~~~~~~~~ 204 (208)
.+- |+.+.+.++.+|..-=..+. .-|-..++ ..++++.+...++.+
T Consensus 148 ---i~~-WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL 199 (409)
T KOG3880|consen 148 ---IAG-WSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLL 199 (409)
T ss_pred ---ecc-ccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhee
Confidence 122 44444444445433222222 23444444 445555555444444
No 295
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=50.65 E-value=74 Score=21.31 Aligned_cols=15 Identities=20% Similarity=0.084 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhhcC
Q psy2964 136 NAFIFYYIIVLECVG 150 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~ 150 (208)
+.+..-.++..|...
T Consensus 69 GgfTTFSTf~~e~~~ 83 (119)
T PRK14230 69 GSLTTLSGFSLETVT 83 (119)
T ss_pred chHhhHHHHHHHHHH
Confidence 344566677777653
No 296
>COG2119 Predicted membrane protein [Function unknown]
Probab=49.25 E-value=41 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHH
Q psy2964 76 FFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV 111 (208)
Q Consensus 76 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 111 (208)
..++..++...+.++++|+..|.+-..+.+++.+..
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 345667777888889999999988777766655543
No 297
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=47.82 E-value=49 Score=18.45 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHH
Q psy2964 74 SIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFL 109 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~ 109 (208)
....++.++.....|+..| ++|.++...+..++.++
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~ 43 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444555666667777776 66776665554444443
No 298
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=45.70 E-value=99 Score=21.35 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.2
Q ss_pred HHHhhcCCchhhhHHhH
Q psy2964 144 IVLECVGPKWRTFAMTF 160 (208)
Q Consensus 144 ~~~e~~~~~~r~~~~~~ 160 (208)
-+.|++|+..|....+.
T Consensus 59 aLkdi~P~~~R~~i~~~ 75 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISST 75 (137)
T ss_pred HHhccCCHHHHHHHHHH
Confidence 45799999999988766
No 299
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=45.52 E-value=90 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.2
Q ss_pred HHHHhhcCCchhhhHHhH
Q psy2964 143 IIVLECVGPKWRTFAMTF 160 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~ 160 (208)
.-+.|++|+..|..+.+.
T Consensus 56 ~ALkDm~Pp~~R~~i~~~ 73 (145)
T TIGR00986 56 YALKDIVPPTTRGWIYHK 73 (145)
T ss_pred HHHHhhCCHHHHHHHHHH
Confidence 346799999999887665
No 300
>PRK03818 putative transporter; Validated
Probab=44.21 E-value=2.2e+02 Score=24.83 Aligned_cols=79 Identities=8% Similarity=-0.052 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSRFLTGVGHFNAFIFYYIIVLE 147 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 147 (208)
.++...++.+|.-.|.-+..-+.+..|.+..+ .+.++..+..+..... ....-+-..+.+-.++.+...+....+..|
T Consensus 437 ~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 437 LGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIG-YGFLITAVPLLIVGILARMLAKMNYLTLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HhHHHHHHHHHhhhhHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccCCCcHHHHHHhc
Confidence 45555666666666666666655666776554 3333333322222222 111111112222223334444666677777
Q ss_pred h
Q psy2964 148 C 148 (208)
Q Consensus 148 ~ 148 (208)
.
T Consensus 516 ~ 516 (552)
T PRK03818 516 L 516 (552)
T ss_pred c
Confidence 4
No 301
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=43.47 E-value=1.6e+02 Score=22.96 Aligned_cols=14 Identities=21% Similarity=-0.121 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhhh
Q psy2964 120 VVLFSLSRFLTGVG 133 (208)
Q Consensus 120 ~~~~~~~~~l~g~~ 133 (208)
.+.+.+.-++.+|+
T Consensus 23 ~~l~~~~~~~~~F~ 36 (284)
T PF12805_consen 23 PWLLILVLALLTFF 36 (284)
T ss_pred cHHHHHHHHHHHHH
Confidence 33333333333333
No 302
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=42.03 E-value=48 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHH-HHHHHHHHhccCCCC
Q psy2964 182 DWQWISVITIFP-LIVGLIVAIFTPESA 208 (208)
Q Consensus 182 ~w~~~~~~~~~~-~~~~~~~~~~~petp 208 (208)
+|+.++++...+ .+++.+.+.+.||+.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 677777665443 444556666778863
No 303
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=39.91 E-value=1.3e+02 Score=21.17 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHH
Q psy2964 138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSE 170 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~ 170 (208)
..+.|.+++-.+++++-|..+|+ -.+-.+++.
T Consensus 112 lGisYGilSaSWD~~r~GSllG~-~e~~~N~~r 143 (153)
T PF11947_consen 112 LGISYGILSASWDPEREGSLLGW-EEFKRNWGR 143 (153)
T ss_pred HhhhhhhcccccCCCCCCCcccH-HHHHHhHHH
Confidence 35677888888888888888887 454444443
No 304
>PRK04972 putative transporter; Provisional
Probab=39.80 E-value=2.6e+02 Score=24.42 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH-HHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV-LFSLSRFLTGVGHFNAFIFYYIIVLE 147 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~e 147 (208)
.++...+..+|...|.-+..-+.+ .|-+..+ ++.++..+..+...+..-+. -+-..+.+-.++.+...+....+..|
T Consensus 447 ~GL~lFla~vGl~aG~~f~~~~~~-~g~~~~~-~g~~~t~~~~~~~~~~~~~~~k~~~~~~~G~~aG~~t~~~~l~~~~~ 524 (558)
T PRK04972 447 FGLMVFMAGVGLSAGSGINNGLGA-VGGQMLI-AGLIVSLVPVVICFLFGAYVLRMNRALLFGAIMGARTCAPAMEIISD 524 (558)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCCcHHHHHHHh
Confidence 344445555555555555555533 5555443 33333333322222211110 01111222223444445677778888
Q ss_pred hcCCchhhhH
Q psy2964 148 CVGPKWRTFA 157 (208)
Q Consensus 148 ~~~~~~r~~~ 157 (208)
....+.-..+
T Consensus 525 ~~~~~~~~~g 534 (558)
T PRK04972 525 TARSNIPALG 534 (558)
T ss_pred hcCCCCcccc
Confidence 8755443333
No 305
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=39.54 E-value=1.6e+02 Score=22.42 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=51.6
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
...+.++|++ ++.+-.=..++|.+|..+|.++.+.++.-. ..+ ++..-...-.-.|
T Consensus 127 laiI~ekYGl---dSpEgrGVl~~Yi~GTvfGtiffsllas~~-------------------a~~--~~fhP~ALAMasG 182 (241)
T PF11299_consen 127 LAIISEKYGL---DSPEGRGVLGVYIIGTVFGTIFFSLLASLL-------------------ASL--GIFHPYALAMASG 182 (241)
T ss_pred eeeeehhcCC---CCccccceEEEeeehhhHHHHHHHHHHHHH-------------------Hhc--cCCCHHHHHHHcC
Confidence 3446677776 333333335677888888888776544311 000 0000112233457
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL 173 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 173 (208)
.|++...+....-+.+.+| +......++ -.....+....|
T Consensus 183 vGSgSMMaAa~~aL~~~~P-~~a~~i~A~-AaaSNllt~~~G 222 (241)
T PF11299_consen 183 VGSGSMMAAASGALAAAYP-EMADQILAF-AAASNLLTSVTG 222 (241)
T ss_pred CcHHHHHHHHHHHHHHHCc-chHHHHHHH-HHHHHHHHHHHH
Confidence 7777777777777888886 555556555 233333444444
No 306
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=38.19 E-value=2.7e+02 Score=24.16 Aligned_cols=49 Identities=10% Similarity=-0.017 Sum_probs=37.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHH
Q psy2964 127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWI 176 (208)
Q Consensus 127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 176 (208)
-.+..+..-..+....++-+.+.+|..=|+.|.+ .+...++|+.--..+
T Consensus 412 ~~l~sf~stvmFVai~AFharISDP~IGGTYMTL-LNTvSNLGGtWP~~~ 460 (544)
T PF13000_consen 412 HVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTL-LNTVSNLGGTWPRTF 460 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccchHHHHH-HHHHHhcCCCchHHH
Confidence 4555566666778888999999999999999988 677777776554433
No 307
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.02 E-value=11 Score=29.38 Aligned_cols=13 Identities=0% Similarity=0.465 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCC
Q psy2964 195 IVGLIVAIFTPES 207 (208)
Q Consensus 195 ~~~~~~~~~~pet 207 (208)
++++++|.++.|+
T Consensus 176 FlaiLIWlY~H~~ 188 (381)
T PF05297_consen 176 FLAILIWLYVHDQ 188 (381)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 3456666666654
No 308
>KOG3097|consensus
Probab=36.43 E-value=1.6e+02 Score=24.05 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHH
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLG 110 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 110 (208)
+..+.....+.++..+.+...|.++.++||-+.+..+.+....-
T Consensus 310 ~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~l 353 (390)
T KOG3097|consen 310 SRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLL 353 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 45677788899999999999999999999999988877665443
No 309
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=35.17 E-value=1.3e+02 Score=19.56 Aligned_cols=32 Identities=13% Similarity=-0.037 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHH
Q psy2964 76 FFLGSLLGGFILSWVAD-RYGRITAVLGSHVVS 107 (208)
Q Consensus 76 ~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~ 107 (208)
..++..+.+.+.|...| ++|-++.+.+.+++.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lll 83 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIV 83 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 33444555566666666 677666544444333
No 310
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=34.86 E-value=1.1e+02 Score=18.65 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy2964 163 LIFYTVSEVALPWIAYYLADWQWISVITIFPL 194 (208)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~ 194 (208)
+....++.+++-+.+....+.+..+++.++-.
T Consensus 14 ~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~ 45 (76)
T PF06645_consen 14 QYILIISAIISFIVGYITQSFSYTFYIYGAGV 45 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666667776666554433
No 311
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.78 E-value=1.4e+02 Score=19.78 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=18.2
Q ss_pred CchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 151 PKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 151 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.++.+.++-.+.=+.-|.++|..+++++.
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665444444555666666666665
No 312
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=32.13 E-value=1.5e+02 Score=19.48 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP 115 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 115 (208)
...+-..+.|.-.+++.++.+++..|+.-+-+-=.++..+..++..++.
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 4456667788888899999999999988877666666666666554443
No 313
>PRK10692 hypothetical protein; Provisional
Probab=31.14 E-value=1.4e+02 Score=18.79 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy2964 96 RITAVLGSHVVSFLGVAL 113 (208)
Q Consensus 96 rr~~l~~~~~~~~~~~~~ 113 (208)
||.+..++-++++++.+.
T Consensus 3 Rk~a~~~GN~lMglGmv~ 20 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVV 20 (92)
T ss_pred chhhHHHhhHHHHHHHHH
Confidence 555666666665555443
No 314
>PF07274 DUF1440: Protein of unknown function (DUF1440); InterPro: IPR009898 This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=30.26 E-value=1.5e+02 Score=20.47 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=22.1
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAM 158 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~ 158 (208)
.+..++.+..++..+.+++|.+|.-+...+.
T Consensus 56 ~~vH~~FSi~fa~~Y~~~ae~~p~i~l~~G~ 86 (135)
T PF07274_consen 56 FIVHFGFSIVFAVAYCVLAEYWPKIKLWQGA 86 (135)
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCccchhhhH
Confidence 3445555667788899999999877665543
No 315
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=30.03 E-value=1.6e+02 Score=19.24 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHhhcC
Q psy2964 136 NAFIFYYIIVLECVG 150 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~ 150 (208)
+.++...++..|...
T Consensus 65 GgfTTFSTf~~e~~~ 79 (108)
T PRK14229 65 GGLTTFSTLNDELQR 79 (108)
T ss_pred cccccHHHHHHHHHH
Confidence 334566677777664
No 316
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=29.34 E-value=2.9e+02 Score=21.91 Aligned_cols=21 Identities=19% Similarity=-0.094 Sum_probs=12.5
Q ss_pred hhCchHHHHHHHHHHHHHHHH
Q psy2964 93 RYGRITAVLGSHVVSFLGVAL 113 (208)
Q Consensus 93 r~Grr~~l~~~~~~~~~~~~~ 113 (208)
++|+|+...+...+..++...
T Consensus 221 ~lG~~~a~~l~~~ll~~~y~~ 241 (308)
T PRK12887 221 RLGKQAVFKLSCWVLTACYLG 241 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 467777776666555555433
No 317
>PRK14214 camphor resistance protein CrcB; Provisional
Probab=27.96 E-value=1.9e+02 Score=19.30 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q psy2964 103 SHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
.++...+++++.++......--..|.+.+.|.-+.+..-.++..|...
T Consensus 38 Tl~vNv~GsfllG~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~ 85 (118)
T PRK14214 38 TFFINITGSFLLGFLVSSALGPVWQLFLGTGFMGGYTTFSTFKVESME 85 (118)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 344555555555543211100012333333333334566677777664
No 318
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.95 E-value=2.5e+02 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.049 Sum_probs=8.9
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q psy2964 178 YYLADWQWISVITIFPLIV 196 (208)
Q Consensus 178 ~~~~~w~~~~~~~~~~~~~ 196 (208)
+++.++.|.+.+.+++..+
T Consensus 46 g~l~~~~~~~~i~gi~~g~ 64 (224)
T PF13829_consen 46 GLLFGSWWYWLIIGILLGL 64 (224)
T ss_pred HHHHccHHHHHHHHHHHHH
Confidence 3333444555555554433
No 319
>PLN02878 homogentisate phytyltransferase
Probab=26.60 E-value=3.2e+02 Score=21.49 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=15.1
Q ss_pred hhhCchHHHHHHHHHHHHHHH
Q psy2964 92 DRYGRITAVLGSHVVSFLGVA 112 (208)
Q Consensus 92 dr~Grr~~l~~~~~~~~~~~~ 112 (208)
-|+|+|++..++..+..++..
T Consensus 194 v~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 194 VRLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred hhhChHHHHHHHHHHHHHHHH
Confidence 367888888877777666654
No 320
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.55 E-value=1e+02 Score=18.64 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=21.0
Q ss_pred hhhhhCchHHHHHHHHHHHHHHHHHhhhcc
Q psy2964 90 VADRYGRITAVLGSHVVSFLGVALTPFSKD 119 (208)
Q Consensus 90 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 119 (208)
--|+-.|++-+.+.+.+-..+.++......
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~ 39 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYR 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888877777777666666543
No 321
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=26.45 E-value=1.7e+02 Score=18.29 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHHHHHH
Q psy2964 96 RITAVLGSHVVSFLGVA 112 (208)
Q Consensus 96 rr~~l~~~~~~~~~~~~ 112 (208)
||.+..++-.+++++.+
T Consensus 3 Rk~a~~~GN~lMglGmv 19 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMV 19 (89)
T ss_pred chhhHHHhhHHHHHhHH
Confidence 55566666655555544
No 322
>PRK14220 camphor resistance protein CrcB; Provisional
Probab=26.27 E-value=2.1e+02 Score=19.19 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhc
Q psy2964 137 AFIFYYIIVLECV 149 (208)
Q Consensus 137 ~~~~~~~~~~e~~ 149 (208)
.+..-.++..|..
T Consensus 72 gfTTFSTf~~e~~ 84 (120)
T PRK14220 72 GYTTFSTLNTELV 84 (120)
T ss_pred ccccHHHHHHHHH
Confidence 3455556666665
No 323
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=26.14 E-value=83 Score=19.97 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCch
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRI 97 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr 97 (208)
.+..+...+.+.+.|.+.||..||
T Consensus 82 ~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 82 WITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344456677888899999999776
No 324
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=26.01 E-value=1.7e+02 Score=18.25 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHhhhhhCc-------hHHHHHHHHHHHHHHHHHhhhc
Q psy2964 79 GSLLGGFILSWVADRYGR-------ITAVLGSHVVSFLGVALTPFSK 118 (208)
Q Consensus 79 ~~~~~~~~~g~l~dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~ 118 (208)
+...+.+.++++.+|.-+ ++.+.++.++...+.++++...
T Consensus 30 ~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqr 76 (86)
T PF10785_consen 30 GATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQR 76 (86)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777776655 6677776666666666655543
No 325
>PRK02237 hypothetical protein; Provisional
Probab=25.28 E-value=2.1e+02 Score=18.90 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT 114 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 114 (208)
..+-....|.-.+++.++.+++..|+.-+-+-=.++..+..++..+.
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 35666778888888999999999998877665566666655555443
No 326
>PRK14199 camphor resistance protein CrcB; Provisional
Probab=24.95 E-value=2.3e+02 Score=19.23 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=11.3
Q ss_pred HHhhhhhhHHHHHHHHHHhhcC
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
..|++ +.+..-.++..|...
T Consensus 73 ~tGf~--GgfTTFSTf~~E~~~ 92 (128)
T PRK14199 73 TTGIM--GGLTTFSTFSYETIN 92 (128)
T ss_pred HhHHh--cccccHHHHHHHHHH
Confidence 34444 334566677777764
No 327
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=24.03 E-value=2.8e+02 Score=19.88 Aligned_cols=76 Identities=9% Similarity=-0.037 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc----HHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD----VVLFSLSRFLTGVGHFNAFIFYYI 143 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~ 143 (208)
+.++...++.+|.-.|.-+..-+.+. |-|.. ..+.+...+.......... .......-. ++.+...+....
T Consensus 57 ~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~---~aGa~T~tp~L~ 131 (169)
T PF06826_consen 57 QLGLALFLAAVGLSAGPGFFSSLKRG-GLKLL-LLGVIITLVPLLIALVIGRYLFKLNPGIAAGI---LAGALTSTPALA 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHccccCcHHHH
Confidence 45667778888888888777776665 66544 4444444444433322211 111222222 223334456667
Q ss_pred HHHhh
Q psy2964 144 IVLEC 148 (208)
Q Consensus 144 ~~~e~ 148 (208)
...|.
T Consensus 132 ~A~~~ 136 (169)
T PF06826_consen 132 AAQEA 136 (169)
T ss_pred HHHHh
Confidence 77777
No 328
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=23.89 E-value=2.4e+02 Score=19.11 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHhhcC
Q psy2964 135 FNAFIFYYIIVLECVG 150 (208)
Q Consensus 135 ~~~~~~~~~~~~e~~~ 150 (208)
.+.+..-.++..|...
T Consensus 77 ~GgfTTFSTf~~E~~~ 92 (127)
T PRK14200 77 LGALTTFSTFSMDNVL 92 (127)
T ss_pred hccchhHHHHHHHHHH
Confidence 3344666677777764
No 329
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=23.42 E-value=2.4e+02 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhhcC
Q psy2964 136 NAFIFYYIIVLECVG 150 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~ 150 (208)
+.+..-.++..|...
T Consensus 75 GgfTTFSTf~~E~~~ 89 (128)
T PRK14212 75 GAFTTFSTFSYETLD 89 (128)
T ss_pred cCcccHHHHHHHHHH
Confidence 334566677777664
No 330
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=23.21 E-value=3e+02 Score=20.07 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=19.1
Q ss_pred HHHHHHHHhHHHHHHHh---hhhhCchHHHHHHHHHHHHHHH
Q psy2964 74 SIFFLGSLLGGFILSWV---ADRYGRITAVLGSHVVSFLGVA 112 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l---~dr~Grr~~l~~~~~~~~~~~~ 112 (208)
....++..+|...++.+ .++..+|+.....+....+...
T Consensus 53 ~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~ 94 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLL 94 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 34444555666666666 2334444444444444444433
No 331
>PRK14228 camphor resistance protein CrcB; Provisional
Probab=23.10 E-value=2.4e+02 Score=18.90 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhhcC
Q psy2964 136 NAFIFYYIIVLECVG 150 (208)
Q Consensus 136 ~~~~~~~~~~~e~~~ 150 (208)
+.+..-.++..|...
T Consensus 73 GgfTTFSTf~~e~~~ 87 (122)
T PRK14228 73 GAYTTFSTWMLETQR 87 (122)
T ss_pred cchhhHHHHHHHHHH
Confidence 334566677777664
No 332
>PRK14232 camphor resistance protein CrcB; Provisional
Probab=23.01 E-value=2.4e+02 Score=18.84 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=11.4
Q ss_pred HHhhhhhhHHHHHHHHHHhhcC
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVG 150 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~ 150 (208)
..|++ +.++.-.++..|...
T Consensus 64 ~tGf~--GgfTTFSTf~~e~~~ 83 (120)
T PRK14232 64 GDGFL--GAYTTFSTFMYEGFN 83 (120)
T ss_pred HHHhc--ccchhHHHHHHHHHH
Confidence 34444 334566677777764
No 333
>KOG2601|consensus
Probab=21.75 E-value=4.9e+02 Score=21.93 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH
Q psy2964 73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL 113 (208)
Q Consensus 73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 113 (208)
..+-....++..++.|...|+..|++++...+.+.-++.+.
T Consensus 69 glvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 69 GLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred HHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 33344456777888899999999999999887766555443
No 334
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=21.68 E-value=3e+02 Score=20.75 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964 78 LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSR 127 (208)
Q Consensus 78 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (208)
+|..+|..+..++.||+-+--+-.+++....++.-....+++....+..-
T Consensus 14 ~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~ilsl 63 (228)
T COG1811 14 IGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILLAL 63 (228)
T ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 45556666666677777666566666666666655555666765544433
No 335
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=21.37 E-value=1e+02 Score=17.76 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy2964 181 ADWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 181 ~~w~~~~~~~~~~~~~~~~~~ 201 (208)
.+||....+.+++.++++.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred ccccchhhHHHHHHHHHHHHh
Confidence 378887777777777755544
No 336
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=20.95 E-value=3.5e+02 Score=20.50 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q psy2964 77 FLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSL 125 (208)
Q Consensus 77 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (208)
.+|..+|..+..++.||+........++....++.-...-.++...+++
T Consensus 12 l~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~ 60 (226)
T PF04474_consen 12 LLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVIL 60 (226)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHH
Confidence 3466666666677777776666666666666665444433445444433
No 337
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.71 E-value=1.8e+02 Score=16.56 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964 167 TVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES 207 (208)
Q Consensus 167 ~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet 207 (208)
.+|.+++...+.+.. ++....++..+..++...+...+|+.
T Consensus 12 il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 12 ILGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555544444433 55555555555555544444455544
No 338
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.69 E-value=3.1e+02 Score=19.26 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITA 99 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~ 99 (208)
+.++...++.+|.-.|.-+..-+...-|-++.
T Consensus 57 ~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~ 88 (154)
T TIGR01625 57 EFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRI 88 (154)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence 35666777777877777776665553334444
No 339
>COG5547 Small integral membrane protein [Function unknown]
Probab=20.68 E-value=1.9e+02 Score=16.65 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q psy2964 97 ITAVLGSHVVSFLGVALTPF 116 (208)
Q Consensus 97 r~~l~~~~~~~~~~~~~~~~ 116 (208)
|..++.+++...++.+++.+
T Consensus 8 kypIIgglvglliAili~t~ 27 (62)
T COG5547 8 KYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 34455555555554444333
Done!