Query psy2964
Match_columns 208
No_of_seqs 181 out of 2075
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 22:05:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 2.1E-20 7.1E-25 153.4 17.0 142 66-208 54-224 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 9.2E-20 3.1E-24 147.8 14.1 152 52-208 51-211 (451)
3 3o7q_A L-fucose-proton symport 99.8 1E-18 3.6E-23 141.2 16.8 152 52-207 49-234 (438)
4 2gfp_A EMRD, multidrug resista 99.8 2.3E-19 7.8E-24 142.5 12.4 153 52-208 23-179 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 2.9E-17 1E-21 134.7 17.1 137 59-199 49-191 (491)
6 2xut_A Proton/peptide symporte 99.7 1.6E-15 5.4E-20 125.4 16.8 137 65-201 52-195 (524)
7 4gc0_A D-xylose-proton symport 99.5 8.9E-13 3E-17 107.9 17.8 139 68-208 313-467 (491)
8 2cfq_A Lactose permease; trans 99.5 7.8E-13 2.7E-17 106.6 15.1 140 68-207 260-403 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.4 6.4E-12 2.2E-16 101.5 16.3 135 65-200 286-429 (451)
10 3o7q_A L-fucose-proton symport 99.4 9.3E-12 3.2E-16 100.3 13.1 135 65-203 293-431 (438)
11 2cfq_A Lactose permease; trans 99.3 5.5E-13 1.9E-17 107.5 0.6 145 57-205 36-188 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.2 8.4E-11 2.9E-15 96.3 10.0 129 67-196 319-463 (491)
13 2xut_A Proton/peptide symporte 98.7 5.6E-08 1.9E-12 80.1 7.8 112 69-181 337-465 (524)
14 2gfp_A EMRD, multidrug resista 98.6 1.3E-08 4.6E-13 80.3 2.6 121 65-189 233-361 (375)
15 2g9p_A Antimicrobial peptide l 77.2 1.5 5.2E-05 19.1 1.6 14 86-99 2-15 (26)
16 4dve_A Biotin transporter BIOY 46.4 55 0.0019 23.1 5.8 24 74-97 100-123 (198)
17 1cmk_I CAMP-dependent protein 21.2 15 0.00053 16.5 -0.4 10 91-100 9-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.85 E-value=2.1e-20 Score=153.43 Aligned_cols=142 Identities=19% Similarity=0.335 Sum_probs=125.9
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh------------------hhccHHHHHHHH
Q psy2964 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP------------------FSKDVVLFSLSR 127 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 127 (208)
+...+++.+.+.+|.++|++++|+++||+|||++++++.++..++.++++ ++++++.++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 34578889999999999999999999999999999999999999998887 468999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHH
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----------DWQWISVITIFPLIV 196 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~w~~~~~~~~~~~~~ 196 (208)
+++|++.|...+..+.+++|..|+++|++..++ .+.+...|..+++.++.... .|++.+.+..++.++
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF-NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh-hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 999999999999999999999999999999988 77788888888877776542 577777777778888
Q ss_pred HHHHHhccCCCC
Q psy2964 197 GLIVAIFTPESA 208 (208)
Q Consensus 197 ~~~~~~~~petp 208 (208)
.++..++.||||
T Consensus 213 ~~~~~~~~peSp 224 (491)
T 4gc0_A 213 FLMLLYTVPESP 224 (491)
T ss_dssp HHHHGGGSCCCH
T ss_pred hhhhhhcCCCCh
Confidence 888888999997
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.83 E-value=9.2e-20 Score=147.78 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=134.9
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh----hccHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF----SKDVVLFSLSR 127 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 127 (208)
.+.+.+++ + +..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.++ +++++.++++|
T Consensus 51 ~~~~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (451)
T 1pw4_A 51 MPYLVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126 (451)
T ss_dssp HHHTTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 45566666 5 6788999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHH-HHHHHh
Q psy2964 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPLIV-GLIVAI 202 (208)
Q Consensus 128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~-~~~~~~ 202 (208)
++.|++.+...+...+++.|++|+++|++++++ ......+|..++|.+++.+. + ||+.|++.+++.++ .++.++
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH-HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 78889999999999987753 6 99999988877666 444556
Q ss_pred ccCCCC
Q psy2964 203 FTPESA 208 (208)
Q Consensus 203 ~~petp 208 (208)
++||+|
T Consensus 206 ~~~~~~ 211 (451)
T 1pw4_A 206 MMRDTP 211 (451)
T ss_dssp HCCCSS
T ss_pred hccCCH
Confidence 678765
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.81 E-value=1e-18 Score=141.16 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=131.7
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhhccHHHHHHHHH
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFSKDVVLFSLSRF 128 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 128 (208)
.+.+.+++++ +..+.+++.+++.++..++.++.|+++||+|||++++.+.++.+++.++. ...++++.+++.|+
T Consensus 49 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 4556677777 78889999999999999999999999999999999999999999999988 78899999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----h----------------------
Q psy2964 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----D---------------------- 182 (208)
Q Consensus 129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~---------------------- 182 (208)
+.|++.+...+...+++.|++|+++|++++++ .+....+|..++|.+++.+. +
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNL-AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSL 204 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHH-HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhh
Confidence 99999999999999999999999999999998 78899999999999887764 2
Q ss_pred ---hHHHHHHHHHHHHHHHH-HH-hccCCC
Q psy2964 183 ---WQWISVITIFPLIVGLI-VA-IFTPES 207 (208)
Q Consensus 183 ---w~~~~~~~~~~~~~~~~-~~-~~~pet 207 (208)
||+.|++.++..++..+ .. ...||+
T Consensus 205 ~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (438)
T 3o7q_A 205 VLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99999777665554333 22 335665
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.81 E-value=2.3e-19 Score=142.51 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=136.5
Q ss_pred ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964 52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 131 (208)
.+.+.++++. +..+.++..+++.++..+++++.|+++||+|||+++..+.++..++..+..+.++++.+++.|++.|
T Consensus 23 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 23 IADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99 (375)
T ss_dssp HHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556667776 6778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES 207 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet 207 (208)
++.+...+....++.|.+|+++|++++++ .+....+|..++|.+++.+. +||+.+++.++..++..+ ..+.+||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSL-LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHH-HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 99999999999999999999999999999 78899999999999998875 899999988777766554 55667876
Q ss_pred C
Q psy2964 208 A 208 (208)
Q Consensus 208 p 208 (208)
|
T Consensus 179 ~ 179 (375)
T 2gfp_A 179 R 179 (375)
T ss_dssp S
T ss_pred C
Confidence 4
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.76 E-value=2.9e-17 Score=134.75 Aligned_cols=137 Identities=18% Similarity=0.123 Sum_probs=122.8
Q ss_pred ccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964 59 DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA 137 (208)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 137 (208)
+++ +..+.++..+++.++..++++++|+++|| +|||+++..+.++..++.++++++++++.++++|++.|++.+..
T Consensus 49 ~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 49 LHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp CCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 665 67789999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964 138 FIFYYIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI 199 (208)
Q Consensus 138 ~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 199 (208)
.+...++++|++|+++ |+.++++ ++....+|..++|.+++.+. +|++.|++.++..++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSI-FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 7777777 66788899999999998875 899999987666555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.68 E-value=1.6e-15 Score=125.42 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=119.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGHFNAFIFYY 142 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~ 142 (208)
+..+.+++.+++.++..++.+++|+++||+ |||+++..+.++.+++.++..+++ +++.+++.|++.|++.+...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 677899999999999999999999999999 999999999999999999999998 999999999999999999999999
Q ss_pred HHHHhhcCCchhhhHHhHH--HHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964 143 IIVLECVGPKWRTFAMTFP--FLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA 201 (208)
Q Consensus 143 ~~~~e~~~~~~r~~~~~~~--~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 201 (208)
+++.|.+|+++|+++.+.. +.....+|..++|.+++.+. +|++.|++.+++.++..+..
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997654430 45577788889988887764 89999998877766644443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.52 E-value=8.9e-13 Score=107.95 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----cc-HHHHH-HHHHHHhhhhhhHHHHH
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KD-VVLFS-LSRFLTGVGHFNAFIFY 141 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~-~~~~~-~~~~l~g~~~~~~~~~~ 141 (208)
.......+..+...++.++.+++.||+|||+.++.+.....++.+..+.. .. ...+. ...+..+++.+ ..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 391 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHH
Confidence 34445566677888999999999999999999999988888877655442 12 22222 22222333333 34778
Q ss_pred HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964 142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVAIFTPESA 208 (208)
Q Consensus 142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~petp 208 (208)
+.+.+|.+|++.|++++|+.. ....++..+++.+...+. ++.+.|++.++++++ .++.++++|||.
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~-~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAV-AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHH-HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHhCCHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 899999999999999999954 455566666655543332 344566776666666 555678899984
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=7.8e-13 Score=106.61 Aligned_cols=140 Identities=9% Similarity=0.015 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964 68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLE 147 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 147 (208)
..++..++..++..++.++.++++||+|||+.+..+.++.++...+.++.++.+.+.+..++.+++.+...+..+.+++|
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777888999999999999999999999888888877777777777777777777787777666777899999
Q ss_pred hcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964 148 CVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES 207 (208)
Q Consensus 148 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet 207 (208)
.+|++.|+++.++.++....+|..++|.+.+.+. ++...|.+.+++.+++.+ .++..||+
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999887446677789999999988765 567777777777666544 34556665
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=6.4e-12 Score=101.54 Aligned_cols=135 Identities=15% Similarity=0.157 Sum_probs=111.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHHHHHHHHHH-HHHHHHhhh--ccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAVLGSHVVSF-LGVALTPFS--KDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....++..++..++..++.++.|++.||+ |||+.+..+..+.. ++..+..+. .+.+...+..++.|++.+...+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHH
Confidence 556788889999999999999999999999 99999888877766 565555555 3677777888899998888888
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHH-HHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTV-SEVALPWIAYYLA---DWQWISVITIFPLIVGLIV 200 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 200 (208)
....++.|.+|++.|++++++ .+....+ |..++|.+.+.+. +|+..+++.+++.+++.+.
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999 6667777 9999999888775 7888888877666654443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=9.3e-12 Score=100.30 Aligned_cols=135 Identities=11% Similarity=0.143 Sum_probs=107.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 144 (208)
+....++..+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.... .++.|++.+...+....+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5667888889999999999999999999999999999999999888888887777655444 478888888888999999
Q ss_pred HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHHHHHHhc
Q psy2964 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPLIVGLIVAIF 203 (208)
Q Consensus 145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~~~~ 203 (208)
..|.+|++ |+.+.++ .. ...+|..++|.+.+.+. + ++..+++.++..++..+..+.
T Consensus 372 ~~~~~~~~-~~~~~~~-~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSF-IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHSSCGGG-HHHHHHH-HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHhhcccc-ccchhhH-HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999866 8888777 34 45588889998888775 5 777777765555554444333
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=5.5e-13 Score=107.53 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=88.9
Q ss_pred ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHH---HHhhhccH-HHHHHHHHHHhh
Q psy2964 57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVA---LTPFSKDV-VLFSLSRFLTGV 132 (208)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~g~ 132 (208)
+++++ +..+.+++.+++.++..++++++|+++||+|||++++.+..+..+... ...+.+.. ......+.+.++
T Consensus 36 ~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 36 DINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp TTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666 677899999999999999999999999999999999988877654221 11121111 112234455554
Q ss_pred hhhhHHHHHHHHHHhhcCC--chhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhccC
Q psy2964 133 GHFNAFIFYYIIVLECVGP--KWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIFTP 205 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~p 205 (208)
+.+...+.......+..++ ++|+...+. ......+|..++|.+++++. +|++.|++.++..++..+..++.|
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-ARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHH-HSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHH-HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcC
Confidence 4443333323333333322 344554554 33345667778888877765 789988876665544444444443
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.19 E-value=8.4e-11 Score=96.25 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHH-----HHHHHHHHHHHHHhhhc---------cHHHHHHHHHHHhh
Q psy2964 67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVL-----GSHVVSFLGVALTPFSK---------DVVLFSLSRFLTGV 132 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~g~ 132 (208)
...++..+...++..++.++.+++.||+|||+... .+..+.+++..+..... +.+.+.+..++.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 398 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL 398 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 45566677788888999999999999999987655 66666666665555432 66677778889999
Q ss_pred hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Q psy2964 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIV 196 (208)
Q Consensus 133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~ 196 (208)
+.+...+..+.++.|.+|++.|+.++|+ ......+|..++|.+.+.+. ++.+.+.+.++..++
T Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (491)
T 4aps_A 399 GEMLISPVGLSVTTKLAPKAFNSQMMSM-WFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVV 463 (491)
T ss_dssp HHHTTTTHHHHHHHHHTTTTCSSSSTHH-HHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHH
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9888888999999999999999999999 67788899999999988876 555666666555554
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.65 E-value=5.6e-08 Score=80.14 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhh----hhhCc----hHHHHHHHHHHHHHHHHHhhh---------ccHHHHHHHHHHHh
Q psy2964 69 LAITRSIFFLGSLLGGFILSWVA----DRYGR----ITAVLGSHVVSFLGVALTPFS---------KDVVLFSLSRFLTG 131 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g 131 (208)
.+.......++..++.++.+++. ||.|+ ++.+..+.++.+++.++.+.. .+.+.+.+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 34444444445555555555543 45443 345667777777777666553 35666777888999
Q ss_pred hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 181 (208)
++.+...+..+.++.|..|++.|++++|+ .+....+|..++|.+.+.+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSF-WTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHH-HGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999 67788899999999988875
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.60 E-value=1.3e-08 Score=80.26 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=87.5
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHH-HHHHHH--HHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964 65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVV-SFLGVA--LTPF--SKDVVLFSLSRFLTGVGHFNAFI 139 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~g~~~~~~~~ 139 (208)
+....+...+...++..++.++.+++.||+|++. ..+... ...+.. .... .++.+.+.+..++.|++.+...+
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 310 (375)
T 2gfp_A 233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFP 310 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhH
Confidence 4566788888899999999999999999998832 333322 222211 1111 13566666778888999888889
Q ss_pred HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHH
Q psy2964 140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVI 189 (208)
Q Consensus 140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~ 189 (208)
....++.|..| ++|+++.++ .+....+|..++|.+.+.+. ++...+.+
T Consensus 311 ~~~~~~~~~~p-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 311 LATSGAMEPFP-FLAGTAGAL-VGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp TTHHHHHTHHH-HHHHHHHHH-HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-cccchHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999998 899999999 67777888888887777664 44444443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=77.18 E-value=1.5 Score=19.08 Aligned_cols=14 Identities=14% Similarity=0.477 Sum_probs=11.3
Q ss_pred HHHHhhhhhCchHH
Q psy2964 86 ILSWVADRYGRITA 99 (208)
Q Consensus 86 ~~g~l~dr~Grr~~ 99 (208)
++|.+..++|||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999854
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=46.44 E-value=55 Score=23.13 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHhhhhhCch
Q psy2964 74 SIFFLGSLLGGFILSWVADRYGRI 97 (208)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~Grr 97 (208)
.-|.+|..+++.+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 456778888899999999987644
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=21.22 E-value=15 Score=16.55 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=7.6
Q ss_pred hhhhCchHHH
Q psy2964 91 ADRYGRITAV 100 (208)
Q Consensus 91 ~dr~Grr~~l 100 (208)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888764
Done!