RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2964
(208 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.8 bits (105), Expect = 4e-06
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 15 PKSKREGRQK-----EEEEEGKKEKKEEEEEK---------KERNEELDRRRRRRRRRD 59
P+S R+ R++ +E + K ++E EK + ++E++++ + R D
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Score = 36.7 bits (84), Expect = 0.003
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 22 RQKEEEEEGKKEKKEEEEE-KKERNEEL 48
RQ E+ E+ K + ++ ++ + ++
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 32.4 bits (73), Expect = 0.063
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 16 KSKREGRQKEE-EEEGKKEK-------KEEEEEKKERNEELDRRRRRRRRRD 59
++E E+ KK+ E+ E+ K N D+ ++ D
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 28.2 bits (62), Expect = 1.7
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 32 KEKKEEEEEKKERNEELDRRRRRRRRRD 59
+E E ++ EE +R+R + D
Sbjct: 78 DRLTQEPESIRKWREE---QRKRLQELD 102
Score = 27.0 bits (59), Expect = 3.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 33 EKKEEEEE--KK---ERNEELDRR-RRRRRRRDNW 61
++ +E E +K E+ + L + W
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 112
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 12/138 (8%)
Query: 74 SIFFLGSLLGGFILSWVADRYG-RIT---AVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129
S + FI+ V+DR R+ ++ + V + + + + + FL
Sbjct: 69 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128
Query: 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP----WIAYYLADWQW 185
G + ++ K R ++ + + V P + DW
Sbjct: 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHA 187
Query: 186 ISVITIFPLIVGLIVAIF 203
+ P ++VA+F
Sbjct: 188 ALYM---PAFCAILVALF 202
Score = 28.9 bits (65), Expect = 1.3
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 8/139 (5%)
Query: 74 SIFFLGSLLGGFILSWVADRY-----GRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRF 128
++ + G + W++D+ G + V V + + + +
Sbjct: 295 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354
Query: 129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD---WQW 185
+ G + + + LE K A F L Y VA I Y D W
Sbjct: 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 414
Query: 186 ISVITIFPLIVGLIVAIFT 204
++ I I+ +I+ I
Sbjct: 415 GFMVMIGGSILAVILLIVV 433
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 37.7 bits (86), Expect = 8e-04
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ ++ +QKE KE + E E +R +E ++ R +
Sbjct: 90 EEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWM 133
Score = 31.2 bits (69), Expect = 0.13
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 16 KSKREGRQKEE-EEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
++ E E E K +KEEE+ + + E + + R+
Sbjct: 100 NVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQ 143
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consor SGC, fatty acid metabolism,
hydrolase; HET: COA; 2.70A {Homo sapiens}
Length = 333
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/102 (12%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 13 IVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRR-RRRDNWVCDGSSNLAI 71
+ ++++ + E +K + + E+ +E + + V +++
Sbjct: 143 VTLLTEQDHVEHNLAAERRKVRLQHEDTFNNLMKESSKFDDLIFDEEEGAVSTRGTSVQS 202
Query: 72 TRSIF-----FLGSLLGGFILSWVADRYGRITAVL--GSHVV 106
+ G+ GG I++W + I+A +H
Sbjct: 203 IELVLPPHANHHGNTFGGQIMAW-METVATISASRLCWAHPF 243
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 36.8 bits (86), Expect = 0.003
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 72 TRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131
+ L + ++DR GR +L + L + + + + + + G
Sbjct: 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99
Query: 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWI-S 187
+G + + + A + + VS + P I L +W+
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGI-LVSPLLAPLIGGLLDTMWNWRACYL 158
Query: 188 VITIFPLIVGLIVAIFTPES 207
+ + V +A + PE+
Sbjct: 159 FLLVLCAGVTFSMARWMPET 178
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 36.1 bits (82), Expect = 0.004
Identities = 7/50 (14%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 16 KSKREGRQKEEEEEGKKE------KKEEEEEKKERNEELDRRRRRRRRRD 59
+ ++ ++ + + ++ KK+ EE + ++E++++ + R D
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157
Score = 33.7 bits (76), Expect = 0.025
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
+ RE ++K +E K E+E +++ ++L+ +R+
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 143
Score = 28.7 bits (63), Expect = 1.2
Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 22 RQKEEEEEGKK--EKKEEEEEKKERNEELDR---RRRRRRRRDNW 61
R +E E +K E++ + ++ + ++ R + ++ + W
Sbjct: 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 138
Score = 27.6 bits (60), Expect = 2.9
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 22 RQKEEEEEGKKEKKEEEEE-KKERNEEL 48
RQ E+ E+ K + ++ ++ + ++
Sbjct: 141 RQSEQVEKNKINNRIADKAFYQQPDADI 168
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 36.1 bits (83), Expect = 0.006
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 11/139 (7%)
Query: 74 SIFFLGSLLGGFILSWVADRYGRITAVLG-SHVVSFLGVALTPFSKDVVLFSLSRFLTGV 132
+ L SLL + ++D+ G +L + + F +L + V
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 133 GHFNAFIFY-------YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQW 185
G + + + F +F V I +
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR---ARMFGCVGWALGASIVGIMFTINN 166
Query: 186 ISVITIFPLIVGLIVAIFT 204
V + ++ +
Sbjct: 167 QFVFWLGSGCALILAVLLF 185
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 34.9 bits (79), Expect = 0.009
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 16 KSKREGRQKEEEEEGKKEKKE-EEEEKKERNEELDRRRRRRRRR 58
K + ++ E KE +E ER +E D+ R+
Sbjct: 192 WIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKN 235
Score = 34.2 bits (77), Expect = 0.017
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K K + + +E + E +E+++ + R+ + ++
Sbjct: 197 KEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKELKE 240
Score = 33.8 bits (76), Expect = 0.024
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+ + +E+ +K + +E K + E L +R
Sbjct: 135 IEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREH 177
Score = 32.2 bits (72), Expect = 0.071
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K RE E +++ K EE ++ EE + + + +
Sbjct: 106 KENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEK 148
Score = 32.2 bits (72), Expect = 0.072
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ K +E+ ++ + +E +K + EL + +R
Sbjct: 135 IEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREH 177
Score = 32.2 bits (72), Expect = 0.084
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 18 KREGRQKEEEEEGKK---EKKEEEEEKKERNEELDRRRRRRRRR 58
+ +K +E E K EK+E E E +R E + + +
Sbjct: 155 SNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKE 198
Score = 31.9 bits (71), Expect = 0.11
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ ++ EE + +E+ +K + + +R +
Sbjct: 75 HEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLE 118
Score = 31.9 bits (71), Expect = 0.12
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+++ E E ++ +E K E+L ++ +
Sbjct: 65 LLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN 108
Score = 31.5 bits (70), Expect = 0.13
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+ +E+ K E +E E L+R + + +
Sbjct: 190 NNWIKMAKEKLAQKMESNKENREAHFA-AMLERLQEKDKH 228
Score = 31.5 bits (70), Expect = 0.14
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ +RE Q+ EE + +EK + E ++ R
Sbjct: 176 EHEREVIQRAIEEN--NNWIKMAKEKLAQKMESNKENREAHFA 216
Score = 31.1 bits (69), Expect = 0.18
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEK-----KERNEELDRRRRRRRRR 58
++ + +E+ K E +E E ER +E D+ R+R
Sbjct: 86 ENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQR 133
Score = 31.1 bits (69), Expect = 0.22
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEK--KERNEELDRRRRRRRRRD 59
+ + +E +K E +E L+R + + + +
Sbjct: 83 AIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAE 128
Score = 30.7 bits (68), Expect = 0.27
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ ++ EE + +E+ +K + + +R +
Sbjct: 177 HEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLE 220
Score = 29.9 bits (66), Expect = 0.42
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+ + EE K +E+ ++ E R
Sbjct: 73 REHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFA 114
Score = 29.9 bits (66), Expect = 0.54
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K E RQ+ EE K +E+ ++ + R+ +
Sbjct: 125 KHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAEL 167
Score = 29.5 bits (65), Expect = 0.64
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K ++E E E + EE + +E ++ + +
Sbjct: 169 KHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN 210
Score = 29.2 bits (64), Expect = 0.75
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
++ + +E+ K E +E + +E +R R+
Sbjct: 137 ENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHERE 180
Score = 28.4 bits (62), Expect = 1.6
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K ++E E E + EE + +E ++ + +
Sbjct: 64 ELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN 108
Score = 28.0 bits (61), Expect = 1.9
Identities = 4/43 (9%), Positives = 14/43 (32%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ + + + EE + E+ + + + R+
Sbjct: 119 RLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRK 161
Score = 28.0 bits (61), Expect = 2.0
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+S +E R+ E+ +E+++ E + +
Sbjct: 103 ESNKENREAHFAAM--LERLQEKDKHAEEVRQRAIEENNNWIKMA 145
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 35.1 bits (80), Expect = 0.009
Identities = 0/51 (0%), Positives = 0/51 (0%), Gaps = 11/51 (21%)
Query: 20 EGRQKEEEE--EGKKEKKEEEEEKKERN---------EELDRRRRRRRRRD 59
+ E
Sbjct: 178 GKQIVFEIPSE 228
Score = 28.5 bits (63), Expect = 1.6
Identities = 1/26 (3%), Positives = 4/26 (15%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEE 47
+ K + +
Sbjct: 115 SRTLTAVHDKILEDLVFPTEIVGKRV 140
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 34.8 bits (79), Expect = 0.016
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
P G + +G +EK + + ++ R+ +R RRR R RD
Sbjct: 327 PDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDR 372
Score = 34.8 bits (79), Expect = 0.017
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ +R R ++ + KEE +ER+++ DR R+RR R
Sbjct: 251 ERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRS 295
Score = 34.1 bits (77), Expect = 0.026
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ +R R +E ++ K+E + E +
Sbjct: 288 RKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGP 331
Score = 34.1 bits (77), Expect = 0.028
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
P +K + + ++ + E ++ R+ + DR R R +R
Sbjct: 337 PDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGE 382
Score = 33.7 bits (76), Expect = 0.035
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
+ G ++ + + + +E+ + DR RRR R +
Sbjct: 318 EPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERE 363
Score = 33.7 bits (76), Expect = 0.037
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + G E E ++ + + D + R RD
Sbjct: 308 ELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRD 351
Score = 33.3 bits (75), Expect = 0.043
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K + G + E + ++ + RD
Sbjct: 306 KEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRD 349
Score = 32.9 bits (74), Expect = 0.060
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
P + + + E+K R+ + +RRR R R+
Sbjct: 319 PSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERE 363
Score = 32.9 bits (74), Expect = 0.064
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
E + + E + + EE R R R RRR +
Sbjct: 314 GDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSH 358
Score = 32.9 bits (74), Expect = 0.070
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
K K R++ ++ ++E E +++ R D
Sbjct: 281 SKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAP 326
Score = 32.5 bits (73), Expect = 0.088
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
E + ++ + E ++ + E E +++R+ + DR R +R
Sbjct: 340 PDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERG 384
Score = 32.1 bits (72), Expect = 0.099
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+SK + R ++ +E+ E E+KE
Sbjct: 280 RSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAG 323
Score = 32.1 bits (72), Expect = 0.099
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + +++ + +ER R RRR RD
Sbjct: 326 PPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRD 369
Score = 32.1 bits (72), Expect = 0.11
Identities = 2/45 (4%), Positives = 16/45 (35%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + + + ++ + + ++ E++ + E +
Sbjct: 277 SRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSE 321
Score = 32.1 bits (72), Expect = 0.13
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ +R + +EE +E+ ++++ ++R R R RR R
Sbjct: 262 RRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERER 305
Score = 31.7 bits (71), Expect = 0.15
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + E E + + R R R+
Sbjct: 310 RGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE 353
Score = 31.7 bits (71), Expect = 0.16
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ +R + ++EE ++ ++ +++ ++R R R R RR
Sbjct: 259 SRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERE 304
Score = 31.7 bits (71), Expect = 0.16
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ + E + EE+ ++R R R RRRD
Sbjct: 324 DAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDR 368
Score = 31.7 bits (71), Expect = 0.17
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
E + +K + + E ++ E +RRR R R RD
Sbjct: 330 GPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRD 373
Score = 31.7 bits (71), Expect = 0.17
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ +G EE+ ++++ + ER DR R R R R++
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREH 378
Score = 31.4 bits (70), Expect = 0.21
Identities = 4/44 (9%), Positives = 14/44 (31%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ ++ + E ++ +++EE + D
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDD 329
Score = 31.4 bits (70), Expect = 0.21
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+E+ + +E++ ++ER + DR R R R
Sbjct: 335 LGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKR 380
Score = 31.4 bits (70), Expect = 0.21
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ R +E ++ +++K +ER R+ R
Sbjct: 270 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGG 314
Score = 31.4 bits (70), Expect = 0.22
Identities = 5/45 (11%), Positives = 17/45 (37%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+S+ + K+ + + + + E ++ +E R +
Sbjct: 276 RSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPS 320
Score = 31.4 bits (70), Expect = 0.22
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ R ++E ++ K ++ + K+ + +R RR R R++
Sbjct: 264 RRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEE 308
Score = 31.0 bits (69), Expect = 0.24
Identities = 2/46 (4%), Positives = 10/46 (21%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
K + ++ E +++++
Sbjct: 289 KRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGE 334
Score = 31.0 bits (69), Expect = 0.24
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ K E R + E + + E +
Sbjct: 304 ERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKG 347
Score = 31.0 bits (69), Expect = 0.25
Identities = 11/60 (18%), Positives = 22/60 (36%)
Query: 1 RFDRGNCNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
R K + R + + + +++EE ++ R D+ R R+RR
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR 294
Score = 31.0 bits (69), Expect = 0.27
Identities = 6/45 (13%), Positives = 21/45 (46%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ +R R++ ++++ ++++ ++ R E + R D
Sbjct: 271 KEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGD 315
Score = 31.0 bits (69), Expect = 0.27
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
R+ ++ E K+K + + + R+ E RR R R+
Sbjct: 265 RSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEEL 309
Score = 31.0 bits (69), Expect = 0.28
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+S+ R++ K+E++ E K+++ + RR R R R
Sbjct: 256 RSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERA 299
Score = 31.0 bits (69), Expect = 0.28
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
++ ++G + + + DR R RRR +
Sbjct: 316 MAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS 360
Score = 30.6 bits (68), Expect = 0.34
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K + R+ E + ++E +EE + ++
Sbjct: 284 KDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPP 327
Score = 30.6 bits (68), Expect = 0.34
Identities = 5/46 (10%), Positives = 10/46 (21%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
+ R++ E +KE+ E
Sbjct: 290 RRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGEL 335
Score = 30.6 bits (68), Expect = 0.38
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
R+ R E ++E++ +EE + + + D+
Sbjct: 285 DRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDD 329
Score = 30.2 bits (67), Expect = 0.43
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ + EE +++ E E R R R R RD
Sbjct: 332 PGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDR 376
Score = 30.2 bits (67), Expect = 0.43
Identities = 7/45 (15%), Positives = 22/45 (48%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + R + + +++ ++ ++++ DR+RR R R+
Sbjct: 253 ERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRE 297
Score = 30.2 bits (67), Expect = 0.44
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+E R++ E K++ + + R R R+ R
Sbjct: 268 SRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRG 311
Score = 29.8 bits (66), Expect = 0.55
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ K E R+ E + K ++ + +R R+ R
Sbjct: 269 RDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGG 313
Score = 29.8 bits (66), Expect = 0.56
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDR---RRRRRRRRDN 60
+ +GR ++ E + E ++R+ + DR R R R
Sbjct: 342 GPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGR 389
Score = 29.8 bits (66), Expect = 0.64
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
R R + ++E ++ +E ++K + R R R RR+
Sbjct: 259 SRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERE 304
Score = 29.4 bits (65), Expect = 0.79
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + R K+++ + K+ E + E + R
Sbjct: 273 ERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMA 317
Score = 29.4 bits (65), Expect = 0.83
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 17 SKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
RE R+ E ++ ++ + ++ ++ +R R R
Sbjct: 350 RDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEAR 393
Score = 29.4 bits (65), Expect = 0.87
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
E G EE+ ++R+ E R R R R
Sbjct: 322 AGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERR 365
Score = 29.4 bits (65), Expect = 0.88
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
E + + E + ++ R R R R
Sbjct: 312 GGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERR 355
Score = 29.4 bits (65), Expect = 0.96
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
E ++ E + + E R RRR R
Sbjct: 317 AEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSE 361
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+S+ R+ ++ ++ + E + K+R+ + R R R R
Sbjct: 258 RSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRE 302
Score = 28.7 bits (63), Expect = 1.5
Identities = 6/45 (13%), Positives = 19/45 (42%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ RE + ++ + ++ + E ++ER + + R +
Sbjct: 274 RRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAE 318
Score = 28.3 bits (62), Expect = 1.8
Identities = 6/44 (13%), Positives = 10/44 (22%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
G E E G + + + + R R
Sbjct: 309 LRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDR 352
Score = 27.9 bits (61), Expect = 2.4
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ +R + ++++ +K + E+ R E R
Sbjct: 272 EERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMA 317
Score = 27.9 bits (61), Expect = 2.5
Identities = 7/47 (14%), Positives = 22/47 (46%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
+ + + E ++ ++ ++ +++ R+ D+ RRR R +
Sbjct: 236 DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSK 282
Score = 27.5 bits (60), Expect = 3.7
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+S+ + ++ E K + ++ + E R R R+
Sbjct: 266 SRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRG 311
Score = 27.1 bits (59), Expect = 4.4
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 1 RFDRGNCNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
+ + + + R KE E + + + EE R R R + +D
Sbjct: 227 PLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD 285
Score = 27.1 bits (59), Expect = 4.6
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K +R ++ +++ + K+ ++ E +R+ R
Sbjct: 270 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGG 314
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 33.7 bits (77), Expect = 0.035
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGSSNLAI 71
+ ++E E ++KKEEEE + +L +R R R+ + +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEF 438
Score = 29.5 bits (66), Expect = 0.91
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 33/78 (42%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNE----------------ELD---------- 49
++K+E +++E ++ + E + KE+ E E D
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGE 449
Query: 50 -------RRRRRRRRRDN 60
+ +R R+R N
Sbjct: 450 VFDKDLSKLKRNRKRITN 467
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 32.6 bits (73), Expect = 0.036
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRR 52
++ E ++E+E+ + E+EEE++E ++L+ R
Sbjct: 44 EENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Score = 31.4 bits (70), Expect = 0.096
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEEL 48
+ + E ++E+E+ ++ ++++E +E EE+
Sbjct: 40 EEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
Score = 30.6 bits (68), Expect = 0.21
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEE 47
+ K E E+E+E + E ++++++ E EE
Sbjct: 39 GEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEE 71
Score = 29.1 bits (64), Expect = 0.65
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELD 49
K + G + E+E+E + + +++E+++E E D
Sbjct: 41 EKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase,
RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A
{Homo sapiens} SCOP: h.1.27.1
Length = 71
Score = 31.3 bits (70), Expect = 0.042
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+E EE +K KK EEE K E+ EE+ + +
Sbjct: 13 RENEELTEKMKKAEEEYKLEKEEEISNLKAAFEK 46
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 33.4 bits (76), Expect = 0.048
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV---VLFSLSRFLT 130
S F+ G + + + ++ + LG AL + ++ LF + F+
Sbjct: 68 SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII 127
Query: 131 GVG 133
G
Sbjct: 128 AAG 130
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 32.8 bits (74), Expect = 0.055
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 13 IVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
K + Q+E E + + E+K E+ +RR +
Sbjct: 191 RALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLK 235
Score = 26.2 bits (57), Expect = 7.9
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K + + + ++ E + +R E + R+R
Sbjct: 187 KRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKR 229
>1kil_E Complexin I snare-complex binding region; helix bound to four
helix bundle, membrane protein; 2.30A {Rattus
norvegicus} SCOP: h.1.15.1
Length = 49
Score = 30.3 bits (67), Expect = 0.055
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 20 EGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
+ +KEEE + + EEE + K E +R R+ RD +
Sbjct: 6 DAAKKEEERQEALRQAEEERKAKYAKMEAEREVMRQGIRDKY 47
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 32.9 bits (74), Expect = 0.057
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 22 RQKEEEEEGK--KEKKEEEEEKKERNEELDRRRRRRRRR 58
R + + +K +E KKE N + + +
Sbjct: 147 RLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKL 185
Score = 29.0 bits (64), Expect = 0.92
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
++KE +E +K K EE ++ + R
Sbjct: 37 QEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQ 75
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 32.6 bits (73), Expect = 0.082
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWV 62
+ + +E+E+ K+ ++E K ++L + + RRR+ +
Sbjct: 547 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDL--QTKMRRRKACTI 591
Score = 29.9 bits (66), Expect = 0.69
Identities = 6/43 (13%), Positives = 21/43 (48%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ E +++ +E K+ ++ E ++ + +E +R + +
Sbjct: 514 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.12
Identities = 41/256 (16%), Positives = 71/256 (27%), Gaps = 75/256 (29%)
Query: 10 YGLIVPKSKREGRQKEEEEEGKKEKKEE-----EEEKK---ERNEELDRRRR--RRRRRD 59
Y ++ K E RQ E+++ + K R + + R+ R
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 60 NWV-------CDGSSNLAIT--RS----------IFFLGSLLG-----GFILSWVADRYG 95
V G + +A+ S IF+L L +L +
Sbjct: 151 KNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLY 207
Query: 96 RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV-GPK-W 153
+I S + + L R L + N ++VL V K W
Sbjct: 208 QIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQNAKAW 259
Query: 154 RTFA------MT------FPFLIFYTVSEVALPWIAY---------YLADWQWIS----- 187
F +T FL T + ++L + L +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 188 --VITIFPLIVGLIVA 201
V+T P + +I
Sbjct: 320 REVLTTNPRRLSIIAE 335
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 31.5 bits (72), Expect = 0.15
Identities = 13/165 (7%), Positives = 35/165 (21%), Gaps = 35/165 (21%)
Query: 74 SIFF----LGSLLGGFILSWVADRYGR---------------ITAVLGSHVVSFLGVALT 114
+F+ GS + + +G + LG +
Sbjct: 151 DMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK 210
Query: 115 PFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP 174
+ + + G N + +I + +
Sbjct: 211 DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMG 270
Query: 175 WIAYYLADWQWIS--------------VITIFPLIVGLIV--AIF 203
++ + + V+ I L + ++F
Sbjct: 271 FVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLF 315
Score = 28.1 bits (63), Expect = 2.0
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 77 FLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLG---VALTPFSKDVVLFSLSRFLTGV 132
+ LLGG W+ADR+ G+ +L ++ +G +A+ S L FL +
Sbjct: 68 YFFPLLGG----WIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL--FLIAL 121
Query: 133 G 133
G
Sbjct: 122 G 122
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation,
ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP:
a.205.1.1 PDB: 2k5b_B 2w0g_A
Length = 265
Score = 31.3 bits (70), Expect = 0.16
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 7 CNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEEL 48
C GL VP + + KE EE G + E K +++
Sbjct: 223 CIDSGLWVP-NSKASEAKEGEEAGPGDPLLEAVPKTGDEKDV 263
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.2 bits (70), Expect = 0.18
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 25 EEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ K +E KE + L + +R
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSY 253
Score = 27.7 bits (61), Expect = 2.3
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEEL 48
+SK +E + K+ + E + L
Sbjct: 224 RSKCGPVGSDERVKEFKQSLIKYMETQRSYTAL 256
Score = 26.9 bits (59), Expect = 4.3
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDR 50
+R +E KE K+ + E
Sbjct: 221 LIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTA 255
>1l4a_E Synaphin A; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex;
2.95A {Loligo pealei} SCOP: h.1.15.1
Length = 79
Score = 29.5 bits (65), Expect = 0.19
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR--RDNW 61
+EE ++ ++E EE +KE++ +++ R R+ RD +
Sbjct: 15 EEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKY 54
Score = 26.4 bits (57), Expect = 2.5
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 25 EEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
E+E E++ E+ R E R+ + R+
Sbjct: 7 EKEGNENAEEEAAAIEEARREAEERRKEKHRK 38
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A
{Bos taurus} SCOP: h.1.27.1
Length = 71
Score = 29.4 bits (65), Expect = 0.20
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELD 49
E+EE K K+ +E+ + ++EE+
Sbjct: 11 NEKEELNNKLKEAQEQLSRLKDEEIS 36
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 30.1 bits (67), Expect = 0.22
Identities = 4/36 (11%), Positives = 19/36 (52%)
Query: 26 EEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
E + K+ ++ + ++ ++R++ R++++
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A
{Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.2 bits (68), Expect = 0.22
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 12 LIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEE 47
L + ++E +EE KE E+ E +++ EE
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEE 41
Score = 30.2 bits (68), Expect = 0.24
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
+ + + K + E KE + E+++E N EL ++R+
Sbjct: 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK 108
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 30.1 bits (67), Expect = 0.24
Identities = 5/31 (16%), Positives = 18/31 (58%)
Query: 31 KKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
K ++ K ++N ++++R+R++++
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane
protein-exocytosis transport protein complex, membrane
protein-exocytosis COMP; 3.50A {Homo sapiens} PDB:
3rl0_g
Length = 63
Score = 28.7 bits (63), Expect = 0.27
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 20 EGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
+ +K EE + + EEE + K E +R R+ RD +
Sbjct: 9 DAAKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGIRDKY 50
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 30.6 bits (69), Expect = 0.34
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
++ +E +++ E EE K + + +EK E+ E L+++++R + D
Sbjct: 378 QAVKENQKRRETEE-KMRRAKLAKEKAEK-ERLEKQQKREQLID 419
Score = 26.8 bits (59), Expect = 6.1
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 23 QKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGSSN 68
KE ++ + E+K + + E +R ++++R + +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGD 425
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 29.6 bits (67), Expect = 0.43
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 33 EKKEEEEEKKERNEELDRRRRRRR 56
++E+EEE ++R E R +
Sbjct: 128 LRQEQEEEGRKRYEAQKLERMETK 151
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 30.2 bits (67), Expect = 0.46
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 14 VPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELD 49
+ + E+ EE + +++ D
Sbjct: 304 TEEPTDDQDDDTASEDDADADDAAEEADDDDDDDED 339
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 28.8 bits (64), Expect = 0.47
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 23 QKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
E++ +E +E+KER + +R RR
Sbjct: 76 LVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRC 111
Score = 26.9 bits (59), Expect = 2.2
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+Q E++ ++ ++++ +R RR
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRR 110
Score = 26.1 bits (57), Expect = 4.0
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
E++ ++ +EEK+ N + +R RR +
Sbjct: 76 LVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.0 bits (67), Expect = 0.49
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 20 EGRQKEEE---EEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+ KE E E ++ + E+ + +EL ++ + +
Sbjct: 229 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA 269
Score = 29.2 bits (65), Expect = 0.84
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 16 KSKREGRQKEEE-EEGKKEKKEEEEEKKERNEELDRRRRR 54
++ +Q E+E +K+ K E+E + +E L + +
Sbjct: 31 AAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK 70
Score = 29.2 bits (65), Expect = 0.95
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+ +E + +KK E+ K+ +EL +++ +
Sbjct: 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKA 52
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
K ++E E E +KK + +
Sbjct: 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELV 44
Score = 27.3 bits (60), Expect = 3.7
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K ++ + EEE + +K +E E + E E + +
Sbjct: 213 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Score = 27.3 bits (60), Expect = 3.9
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+++ + + E + E K+ E+L+ ++
Sbjct: 47 QKKLKATEDELDKYSEALKDAQEKLELAEKKATD 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 28.0 bits (62), Expect = 0.65
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K + ++ ++ +E + ++ERN R+ R + +
Sbjct: 2 KSKAKKTVDK------HSDEYKIRRERNNIAVRKSRDKAKM 36
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 29.5 bits (67), Expect = 0.65
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 19 REGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
++ +E E +E+ E E E ++ +ELD+ +
Sbjct: 40 NRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.67
Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 85/209 (40%)
Query: 25 EEEEEGKK---------EKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSI 75
E EG +++ ++ + N L ++ + I
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ---------------VEI---- 368
Query: 76 FFLGSLLGG---FILS-WVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131
SL+ G ++S YG + + S L + PFS+ + FS +RFL
Sbjct: 369 ----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-NRFL-- 421
Query: 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPF----------LIFYTVSEVALPWIAYYLA 181
P + PF LI + + + + A +
Sbjct: 422 -------------------P------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 182 ----------DWQWISVITIFPLIVGLIV 200
D + +S +I IV I+
Sbjct: 457 IPVYDTFDGSDLRVLSG-SISERIVDCII 484
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 0.80
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 150 GPKWRTFA 157
+WRTF+
Sbjct: 60 RSEWRTFS 67
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 0.81
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K++ + E E E K+ +E E EL+ + ++
Sbjct: 747 KAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLAN 789
Score = 29.4 bits (65), Expect = 0.90
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K K + E E E ++ KK E E +L+ + ++
Sbjct: 745 KLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 29.3 bits (66), Expect = 0.88
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEE 47
K +++E EE+ ++ K +E+ +KER E+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 27.4 bits (61), Expect = 3.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 31 KKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ +K+ E EEK R + + + R
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLE 338
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 26.9 bits (60), Expect = 0.99
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWV 62
RQK+ E+ + E +E +++NE L R + ++
Sbjct: 18 RQKKRAEQ--EALTGECKELEKKNEALKERADSLAKEIQYL 56
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.7 bits (64), Expect = 1.0
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
E+E+ K ++E ++KK ++L +++ R
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 27.6 bits (61), Expect = 2.7
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 25 EEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
E+E+ + +EE +KK+ +++ ++++ R
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 26.8 bits (59), Expect = 4.1
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 26 EEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
E+E K EEE +K++ + ++++ R+
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEE----------KKERNEELDRRRRRRRR 57
R+ KEE+ + K+E ++ +E ++ N +++ R R
Sbjct: 139 TEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGR 190
Score = 27.0 bits (59), Expect = 5.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDR 50
PK+K + ++ E + KK+ K+EEE+K + EE
Sbjct: 2 PKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERY 37
Score = 26.6 bits (58), Expect = 7.3
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEE 47
Q E ++ KE+K + +E+ E+ +
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLK 162
Score = 26.3 bits (57), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRR 51
K + E K+ KEE+ + KE NE+L +
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 1.2
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 16 KSKREGRQKEEEEE----GKKEKKEEEEEKKERNEELDRRRRRRRR 57
+KRE ++ + E KK E + + ++D + + +
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Score = 28.2 bits (63), Expect = 2.7
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 22 RQKEEEEEGKKEKKEE--EEEKKERNEELDRRRRR 54
R+ ++ + E E+ EE K+ +L+ R R
Sbjct: 1044 RRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 27.8 bits (62), Expect = 2.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEE-------EKKERNEELDRRRRRRRRR 58
K + E E +E+ K E+EE + KE E ++++ ++
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Score = 27.4 bits (61), Expect = 4.7
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ ++E + + EKK EE + E ++ + +
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Score = 26.2 bits (58), Expect = 9.8
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRR 53
+ E + + + +E+ + + L +
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.1 bits (64), Expect = 1.2
Identities = 4/42 (9%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 14 VPKSKREGRQKEEE---EEGKKEKKEEEEEKKERNEELDRRR 52
+ +KE E + + + + + + + + D
Sbjct: 315 DMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
Score = 27.1 bits (59), Expect = 4.6
Identities = 4/44 (9%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 13 IVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
+ + + + E+E E + +E ++ + +
Sbjct: 311 VENEDMNKDQILLEKEA---ELRRMQEMIARMQAQMQMQMQGGD 351
Score = 26.7 bits (58), Expect = 6.1
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 17 SKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ + + E+ + E+E E + E + R + + + +
Sbjct: 305 KRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQ 346
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 20 EGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
E K + +E +K R+E LD R+ R
Sbjct: 349 EADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTA 387
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 28.1 bits (61), Expect = 1.3
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K EE K ++ E++ K + + ++ ++
Sbjct: 42 MEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKE 85
Score = 27.3 bits (59), Expect = 2.4
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 22 RQKEEEE------EGKKEKKEEEEEKKERNEELDRRR 52
R+ E + + K+ +++ +EL+ ++
Sbjct: 66 RKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKK 102
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 29.0 bits (65), Expect = 1.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEEL 48
K+ E E E+K E E++ + E L
Sbjct: 526 KDFELEETDEEKAEREKEIKEYEPL 550
Score = 26.3 bits (58), Expect = 8.8
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKE 43
+ + EE +E K E+++E +E +
Sbjct: 522 VDITKDFELEETDEEKAEREKEIKEYEP 549
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator
stalk, right handed coiled-coil, ATPase/SY ATP binding,
membrane, hydrolase; 2.25A {Thermus thermophilus} PDB:
3k5b_G 3j0j_I
Length = 105
Score = 27.7 bits (60), Expect = 1.4
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 11 GLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
GLI +++E + E E KKE +E + + + L + +
Sbjct: 6 GLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKA 53
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 28.4 bits (63), Expect = 1.4
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 26 EEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
E+E K E++ + + + R ++R
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 26.8 bits (59), Expect = 4.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
E+EE K +++ R ++R
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 27.7 bits (62), Expect = 1.4
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 11 GLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKE 43
G++ K + EK+E ++ K
Sbjct: 77 GILKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 25.8 bits (57), Expect = 6.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEE 47
+ E + G E+ E KK + E
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 28.2 bits (62), Expect = 1.5
Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 17 SKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
S+ + R +E+E G+++ EE+ E+ + + +R+
Sbjct: 111 SEPKYRTREQESSGEEDNDLSPEER-EKKRQFEMKRKL 147
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 27.8 bits (61), Expect = 1.7
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 27 EEEGKKEKKEEEEEKKERNEELDRRRR 53
EE ++K EE++ ++E +R+
Sbjct: 116 EEAEVRKKLEEKDRQEEAQRLQQKRQE 142
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
difficile}
Length = 189
Score = 27.9 bits (62), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 20 EGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
E + EE+ E +E ++ K E EE +RR R + D
Sbjct: 150 EEQDGFEEDANFMEYEEIDKIKSEALEEFAKRRNRVNKND 189
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 28.4 bits (64), Expect = 1.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEEL 48
K+ E E E+K E E++ + E L
Sbjct: 254 KDFELEETDEEKAEREKEIKEYEPL 278
>2j0s_T Protein CASC3; mRNA processing, phosphorylation, rRNA processing,
mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo
sapiens} PDB: 2j0q_I* 2xb2_T* 3ex7_D* 2j0u_T 2hyi_D*
Length = 150
Score = 27.7 bits (60), Expect = 1.9
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 25 EEEEEGKKEKKEEEEE-----KKERNEELDRRRRRRRRR 58
E+E+ K ++E + N + + RR R+ R
Sbjct: 88 REDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPR 126
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 27.4 bits (60), Expect = 2.1
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKK-ERNEELDRRRRRRRRR 58
K + +EE+ + KEKK+ E+ + + + + +
Sbjct: 97 KPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSK 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.7 bits (61), Expect = 2.2
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 20 EGRQKEEEEEGKKEKKEEEEEKKER 44
+ + EE + E + +R
Sbjct: 223 QVLRWAGPEERLRRVAERVAARVQR 247
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 26.8 bits (59), Expect = 2.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
EEE +E ++ E+ +K E L++ + R D
Sbjct: 17 ALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.9 bits (61), Expect = 2.4
Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKER---NEELDRRRRRR 55
+++ + Q+ E+ + + E+ + +++ +RRRR R
Sbjct: 137 RAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSR 179
>3pfy_A OTU domain-containing protein 5; structural genomics, structural
genomics consortium, SGC, PE C65 otubain, hydrolase;
HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Length = 185
Score = 27.4 bits (60), Expect = 2.4
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 21 GRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
GR+ + ++E E R E +D ++
Sbjct: 10 GRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHW 48
>2fxa_A Protease production regulatory protein HPR; protease porduction,
regulation, STR genomics, PSI, protein structure
initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis}
SCOP: a.4.5.28
Length = 207
Score = 27.6 bits (61), Expect = 2.4
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 13 IVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELD 49
I S E GK +KK ++ E EEL+
Sbjct: 165 IFETSLTNIDNDFESVNGKLKKKAKDSAADEPAEELE 201
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 27.4 bits (60), Expect = 2.8
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
K E ++E E+ + E K R E+ R +
Sbjct: 76 KEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTK 114
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.4 bits (61), Expect = 2.9
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELD 49
S+ E + +E K E E + D
Sbjct: 199 LSEEAAEAVLEGDASLEEVKAEASEDNAGTDSED 232
Score = 26.6 bits (59), Expect = 5.2
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 20 EGRQKEEEEEGKKEKKEEEEEKKERNEE 47
E EE + E + +E E
Sbjct: 193 LVAAGELSEEAAEAVLEGDASLEEVKAE 220
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin
binding, alternative splicing, developmental protein,
differentiation; 2.70A {Caenorhabditis elegans} PDB:
3k6b_A*
Length = 239
Score = 27.6 bits (60), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 27 EEEGKKEKKEEEEEKKERNEELDRRRRR 54
EEE K+ +KE E +ER + + ++R
Sbjct: 77 EEEHKRMRKEIEAVHEERVQAMLNEKKR 104
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 27.4 bits (60), Expect = 3.0
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K + +K E E + + EK++ N E+D + + +
Sbjct: 107 KHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQ 149
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain, thioesterase, structural genomics, structural
genomics consortium, SGC; 2.80A {Homo sapiens}
Length = 193
Score = 27.4 bits (61), Expect = 3.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 36 EEEEEKKERNEELDRRRRRRRRR 58
E E+EKK E R + + +R
Sbjct: 165 ETEDEKKRFEEGKGRYLQMKAKR 187
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.9 bits (59), Expect = 3.2
Identities = 6/44 (13%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKK-ERNEELDRRRRRRRRR 58
K + +E KE+ ++ +++K + E+ + ++ + +
Sbjct: 100 KPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKG 143
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 3.2
Identities = 7/37 (18%), Positives = 22/37 (59%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
+ E + ++ + KK+ +++ + +E+ EE + R++
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Score = 27.5 bits (61), Expect = 3.7
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 9 CYGLIVPKSKREGRQKEEEEEGKKEKKE----EEEEKKERNEELDRRRR 53
L K + E E E ++E++ + E+KK + + LD +
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 27.1 bits (60), Expect = 4.7
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 20 EGRQKEEEEEGKK---EKKEEEEEKKERNEELDRRRRRRRR 57
E R +EEEE ++ EKK+ +++ + E+L+ R++
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Score = 27.1 bits (60), Expect = 5.2
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
K++++ R EE E K + E+ + +EL +
Sbjct: 1141 KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 26.3 bits (58), Expect = 8.2
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
+E+ E K + + E++K++ +EEL+ +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 25.8 bits (56), Expect = 3.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 19 REGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
RE + + E +K+E E K++ +ELD R+
Sbjct: 15 REEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQD 52
Score = 25.1 bits (54), Expect = 6.6
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 17 SKREGRQKEEEEEGKKEKKEEEEE-KKERNEELDRRRRRRRRRDN 60
+ +++E E K++ +E +E ++E+L + + R D
Sbjct: 23 EALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADE 67
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA,
protein-DNA complex, transcription factor, BZIP, C/EBP;
1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A
1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B
1nwq_A
Length = 78
Score = 26.0 bits (57), Expect = 3.2
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K + ++ + +E + ++ERN R+ R + +
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKM 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 27.3 bits (60), Expect = 3.2
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 14 VPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDR 50
+ R+ E+++ +K + EEE+ ++ ++
Sbjct: 286 ALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVES 322
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein,
structural genomics, PSI-2; 2.30A {Desulfovibrio
vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Length = 340
Score = 27.3 bits (60), Expect = 3.4
Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 31/151 (20%)
Query: 75 IFFLGSLLGG-------FILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSR 127
+ F +++ G + S ++ + I +++G + +
Sbjct: 191 VMFQDNIVTGVIFVVAILVNSRISALFAVIGSLVGLCTALIMHS------------PETP 238
Query: 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY-------- 179
G+ FN+ + + RTF ++ ++ A +
Sbjct: 239 VRLGLYGFNSVLCGIAMGGIFFYLNIRTFLYALGCMVLGAIATGAFSVLLSPIGMPALTW 298
Query: 180 ---LADWQWISVITIFPLIVGL-IVAIFTPE 206
+ W ++ ++F I + TPE
Sbjct: 299 PFIVVTWLFLFAGSMFRNIAQVPTEKAGTPE 329
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 27.1 bits (59), Expect = 3.7
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 12 LIVP-KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
LI P + R+ K E+ + + +EE ++ E ++R +
Sbjct: 182 LITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAH 228
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 27.1 bits (59), Expect = 3.7
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 14 VPKSKREGRQKEEEEEGKKEKKEEEEEKKE-RNEELDRRRRRRRRR 58
VP+ K++ + K + +KK E +++RR
Sbjct: 4 VPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAE 49
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 27.2 bits (61), Expect = 3.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEEL 48
K+ E E E+K E E++ + E L
Sbjct: 254 KDFELEETDEEKAEREKEIKEYEPL 278
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo
sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A*
Length = 219
Score = 27.1 bits (59), Expect = 4.0
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 27 EEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
EE+ E++ E R L +RR + +
Sbjct: 82 EEQVSGERQRLVETHATRVIAL-INDQRRAALEGF 115
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural
genomics, PSI-2, protein structure initiative; NMR
{Shigella flexneri}
Length = 108
Score = 26.2 bits (57), Expect = 4.1
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 17 SKREGRQKEEEEEGKKEKKEEEEEKKERN-----------EELDRRRRR 54
G E + K+ ++E E ++ + E DR ++
Sbjct: 60 GDDGGLTTAERQRLKEPERENRELRRSNDILRLASAYFAKAEFDRLWKK 108
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 27.1 bits (60), Expect = 4.3
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 7/38 (18%)
Query: 34 KKEEEEEKKERNE-------ELDRRRRRRRRRDNWVCD 64
K + + L +R D V +
Sbjct: 350 KAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGE 387
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP:
d.38.1.1 PDB: 3sps_A
Length = 169
Score = 26.5 bits (59), Expect = 4.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 36 EEEEEKKERNEELDRRRRRRRRR 58
+ EEEK+ R+ R++R
Sbjct: 144 QTEEEKRLYETAPARKENRKKRA 166
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 26.7 bits (58), Expect = 4.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRR 51
+E + + E+ KKE + KE N RR
Sbjct: 157 GGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRR 192
>2q2b_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain; 2.50A {Mus musculus}
Length = 179
Score = 26.6 bits (59), Expect = 4.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 36 EEEEEKKERNEELDRRRRRRRRR 58
E E+EKK E R + + +R
Sbjct: 149 ETEDEKKRFEEGKGRYLQMKAKR 171
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 27.1 bits (60), Expect = 4.8
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 31 KKEKKEEEEEKKERNE 46
++EK+ E +++KER E
Sbjct: 338 QEEKRIEAQKRKERQE 353
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal
transducing protein, cyclase, effector enzyme; HET: GSP
FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB:
1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C*
1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C*
3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 27.1 bits (59), Expect = 4.8
Identities = 4/32 (12%), Positives = 21/32 (65%)
Query: 32 KEKKEEEEEKKERNEELDRRRRRRRRRDNWVC 63
++++ EE+ ++E N++++++ ++ ++
Sbjct: 10 EDQRNEEKAQREANKKIEKQLQKDKQVYRATH 41
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 26.0 bits (57), Expect = 5.0
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 23 QKEEEEEGKKEKKEEEEEK--KERNEELD 49
K +++ GKK+ E ++K ER + L+
Sbjct: 10 AKADQKRGKKQTARETKKKVLAERRKPLN 38
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell
surface, secretory P metal binding protein; 2.00A {Homo
sapiens} PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Length = 211
Score = 26.8 bits (58), Expect = 5.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 26 EEEEGKKEKKEEEEEKKERNEELDRRRRR 54
E+E E+++ E R E + RRR
Sbjct: 74 LEQEAANERQQLVETHMARVEAMLNDRRR 102
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 26.9 bits (58), Expect = 5.1
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
K E ++ K+E+ + K L RR
Sbjct: 29 KSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSVIERRNDL 69
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 27.0 bits (59), Expect = 5.1
Identities = 1/28 (3%), Positives = 13/28 (46%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKE 43
+ ++ ++++ ++++ + E
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex,
double helix, overhanging base, transcription/DNA
complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 25.0 bits (55), Expect = 5.3
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 6/19 (31%)
Query: 48 LDRRRRR------RRRRDN 60
+D +RR RRRRD
Sbjct: 1 MDEKRRAQHNEVERRRRDK 19
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA
repair, recombination, HOOK motif, replication; HET:
DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Length = 112
Score = 25.9 bits (56), Expect = 5.5
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K+ EE + +K EEE+ E + + + +
Sbjct: 2 KKLLEELETKKTTIEEERNEITQRIGELKNKIGDLK 37
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 26.9 bits (59), Expect = 5.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 28 EEGKKEKKEEEEEKKERNE 46
E ++EK+ E +++KER E
Sbjct: 504 ERLQEEKRIEAQKRKERQE 522
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein
structure initiative, PSI, midwest center for structural
GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP:
d.38.1.1
Length = 174
Score = 26.5 bits (59), Expect = 5.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 36 EEEEEKKERNEELDRRRRRRRRR 58
+ EEEK+ + R +R R+
Sbjct: 140 DTEEEKESHRIAVLRAEQRHIRK 162
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 26.7 bits (59), Expect = 5.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 75 IFFLGSLLGGFILSWVADRYGRITAV 100
+ +G GG + A R+ V
Sbjct: 202 VGVMGPSQGGGLSLACAALEPRVRKV 227
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 26.5 bits (59), Expect = 6.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 19 REGRQKEEEEEGKKEKKEEEEEKKE 43
+EG + E+EE KK+++E++ + +
Sbjct: 256 KEGLELPEDEEEKKKQEEKKTKFEN 280
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural
genomics, PSI-biology, NEW YORK consortium on membrane
PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos
taurus} PDB: 4ezd_A*
Length = 384
Score = 26.6 bits (58), Expect = 6.7
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 31/151 (20%)
Query: 75 IFFLGSLLGG-------FILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSR 127
I+ + G + S + + I ++LG L
Sbjct: 228 IYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIIAGLSLSA------------PFED 275
Query: 128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY-------- 179
G+ FN+ + I + W+T + +F ++ +
Sbjct: 276 IYAGLWGFNSSLACIAIGGTFMALTWQTHLLALACALFTAYLGASMSHVMAVVGLPSGTW 335
Query: 180 ---LADWQWISVITIFPLIVGL-IVAIFTPE 206
LA ++ + T P I + I + PE
Sbjct: 336 PFCLATLLFLLLTTKNPNIYKMPISKVTYPE 366
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 26.0 bits (57), Expect = 6.8
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
+ +R + E+ ++ ER + L+R RR
Sbjct: 98 QERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 139
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for
eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin
hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Length = 328
Score = 26.7 bits (58), Expect = 6.8
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRR 53
+ E + EEE +K +R + + RR+
Sbjct: 257 SAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK 288
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 26.2 bits (57), Expect = 6.8
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 4 RGNCNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVC 63
+ ++KR+GR G ++K + RR+R RR
Sbjct: 56 VIHSRSRARAFLEAKRKGRHT-----GSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYR 110
Query: 64 D 64
Sbjct: 111 A 111
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C*
1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F*
1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C
1xmo_C* 1xmq_C* 1xnq_C* ...
Length = 239
Score = 26.4 bits (59), Expect = 6.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 30 GKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
G ++ K E K RR R +++
Sbjct: 209 GGQKPKARPELPKAEERPRRRRPAVRVKKEE 239
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 26.6 bits (59), Expect = 6.9
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 164 IFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA 208
+ +S +A + Y L ++ L+ A+ + E+
Sbjct: 38 LRMKISRLAGRFAGYIL----YVVSGVALCLLSTFWCAVLSTEAE 78
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 26.6 bits (59), Expect = 7.0
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL 109
+ R+ R + +++ LG ++G F L W+ FL
Sbjct: 206 EQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP---------------FFL 250
Query: 110 GVALTPFSKDVVLFSLSRFLTGVGHFNAFI 139
+ F++D+V L +G+ N+ +
Sbjct: 251 VNIVNVFNRDLVPDWLFVAFNWLGYANSAM 280
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 26.2 bits (57), Expect = 7.3
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
+ + E+ +K ++ E K+ +++ R+ RR
Sbjct: 143 HKSKAEKAREKTLSDQFEAKRAKSKASRERKIARR 177
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.4 bits (59), Expect = 7.6
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW 61
+++ + +E++ + +E E+ R+ E R + + +W
Sbjct: 400 EQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like
domain, UBL, ubiquitin specific protease, HOST-virus
interaction, nucleus, protease; NMR {Homo sapiens}
Length = 130
Score = 25.6 bits (56), Expect = 7.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 31 KKEKKEEEEEKKERNEE 47
++EK+ E +++KER E
Sbjct: 11 QEEKRIEAQKRKERQEA 27
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X*
3s6n_A
Length = 119
Score = 25.7 bits (56), Expect = 7.9
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 2 FDRGNCNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
RGN Y I+P S + E K KK E + R R R R R R
Sbjct: 59 SIRGNNIRY-FILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 26.2 bits (57), Expect = 8.0
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
+ ++ + ++E ++ +N +R +
Sbjct: 143 HVSKADKIKSDKLTSQQEARRAKNTASRAKRNEKA 177
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 26.2 bits (56), Expect = 8.1
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 122 LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
L L +F+ + ++I + G K RT + +L+ + A + Y+
Sbjct: 100 LVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYF 157
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 26.2 bits (57), Expect = 8.5
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 3 DRGNCNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
D N ++ K + R E E +E+ +++D+ R+
Sbjct: 114 DNPNMISAFILGDKDTKTKRVMERE-------GVDEKTALNMMKKMDKMRKVYHNF 162
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 26.2 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 10 YGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNE 46
Y I S KE++ K EK + + + RNE
Sbjct: 250 YCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYVQRRNE 286
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 195
Score = 25.8 bits (56), Expect = 8.7
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 13 IVPKSK----REGRQKEEEEEGKKEKKEEEEEKKE 43
S GR K + ++ + EE+ E
Sbjct: 160 FSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 194
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 26.0 bits (57), Expect = 8.9
Identities = 4/28 (14%), Positives = 16/28 (57%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRR 51
+ ++E+ K+ +E+++ + E+ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 25.3 bits (55), Expect = 9.0
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 23 QKEEEEEGKKEKKEEEEEKKERNEELDRRR 52
QK+ + E K K++ E EKK + +RR+
Sbjct: 7 QKQAQTERKSGKRQTEREKK-KKILAERRK 35
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.1 bits (58), Expect = 9.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 19 REGRQKEEEEEGKKEKKEEEEEKKE 43
+EG EE EE K++++EE+ ++
Sbjct: 272 KEGVHFEESEEEKQQREEEKAACEK 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.448
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,416,947
Number of extensions: 207486
Number of successful extensions: 2019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1796
Number of HSP's successfully gapped: 302
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)