RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2964
(208 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 58.9 bits (141), Expect = 5e-11
Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 4/142 (2%)
Query: 66 SSNLAITRSIFFLGSLLGGFILSWVADRYGR----ITAVLGSHVVSFLGVALTPFSKDVV 121
+L S + FI+ V+DR ++ + V + + +
Sbjct: 58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 117
Query: 122 LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181
+ + FL G + ++ K R ++ + +A
Sbjct: 118 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177
Query: 182 DWQWISVITIFPLIVGLIVAIF 203
+ P ++VA+F
Sbjct: 178 WFNDWHAALYMPAFCAILVALF 199
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 45.9 bits (107), Expect = 1e-06
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 5/135 (3%)
Query: 74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
+ L SLL + ++D+ G +L + A L + + +
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 134 HFNAFIFYYIIVLECV-----GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISV 188
F + V R+ +F V I + V
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV 169
Query: 189 ITIFPLIVGLIVAIF 203
+ ++ +
Sbjct: 170 FWLGSGCALILAVLL 184
Score = 38.2 bits (87), Expect = 4e-04
Identities = 15/148 (10%), Positives = 51/148 (34%), Gaps = 3/148 (2%)
Query: 60 NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
G+ ++ L + F + +R G A+L + + + + + F+
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS 311
Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
+ + + L + + + ++ F F ++ + + +A
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371
Query: 180 LAD---WQWISVITIFPLIVGLIVAIFT 204
+ + +Q ++ + ++++FT
Sbjct: 372 MYESIGFQGAYLVLGLVALGFTLISVFT 399
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 36.0 bits (83), Expect = 9e-04
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ EE K KE+ +K E N+E
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLE 118
Score = 33.7 bits (77), Expect = 0.006
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 15 PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
S E ++K E E +++ +E E K E+ + R ++
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLA-EKREHEREVIQKAI 84
Score = 31.8 bits (72), Expect = 0.024
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEE-KKERNEELDRRRRRRRRRD 59
K ++E E E ++ EE K E+L ++ +
Sbjct: 65 LLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENR 109
Score = 31.4 bits (71), Expect = 0.032
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
QK E + +E ++ + ++ R+ +
Sbjct: 99 AQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 30.6 bits (69), Expect = 0.053
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRR 55
++ KE E E +EK + EE+ + + +
Sbjct: 100 QKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 29.5 bits (66), Expect = 0.16
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKE---RNEEL 48
K + +E E+ +E+++ E +N+EL
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 136
Score = 26.0 bits (57), Expect = 2.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 16 KSKREGRQKEEEEEGK-KEKKEEEEEKKERNEE 47
K RE E + K+K EE K + +E
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 25.6 bits (56), Expect = 3.1
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 9 CYGLIV--PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ +I+ P + EE ++K E EE + + +
Sbjct: 16 SFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLK 67
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.5 bits (81), Expect = 0.003
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
K + + Q +E+E K +E+E+ + E + R +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLK-EGFQKESRIMKN 291
Score = 35.1 bits (80), Expect = 0.003
Identities = 6/40 (15%), Positives = 20/40 (50%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
E +++ +E K+ ++ E ++ + +E +R + +
Sbjct: 233 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
Score = 34.3 bits (78), Expect = 0.007
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
R +E + EK E + + + +E + + +
Sbjct: 239 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 276
Score = 33.9 bits (77), Expect = 0.008
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ + + + + KE++ K + E+L + ++ R
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Score = 32.8 bits (74), Expect = 0.023
Identities = 5/39 (12%), Positives = 17/39 (43%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
K + + +E+ + K+ ++E + E+ + +
Sbjct: 261 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 30.9 bits (69), Expect = 0.090
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKK---ERNEELDRRRRRRRRR 58
+ + +E + +K E + + E+ L + + + +
Sbjct: 234 MEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Score = 27.0 bits (59), Expect = 1.8
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEEL 48
K + +++ +E +KE + + E ++ ++
Sbjct: 268 ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 29.1 bits (65), Expect = 0.20
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEE---------------KKERNEELDRRRRRRRRRDN 60
K++R G+ + E E+ + KE+ +E + R + R+
Sbjct: 9 KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKV 68
Query: 61 WVCDGS 66
W+
Sbjct: 69 WINTSD 74
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 28.0 bits (62), Expect = 0.22
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 8/28 (28%)
Query: 24 KEEEEEGKK--------EKKEEEEEKKE 43
K + K KK +E K+
Sbjct: 41 KWHNDAENKKCTLDKEEAKKVADETAKD 68
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.2 bits (65), Expect = 0.35
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKER 44
K +++E EE+ ++ K +E+ +KER
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.6 bits (61), Expect = 1.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 31 KKEKKEEEEEKKERNEELDRRRRRRR 56
+ +K+ E EEK R + + + R
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.5 bits (58), Expect = 2.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 31 KKEKKEEEEEKKERNEELDRRRRRRRR 57
K+ +K E E+K R +L + + + R
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 25.3 bits (55), Expect = 6.3
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRR 52
Q +E + ++E +E+ K E+ ++ R
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 25.3 bits (55), Expect = 6.4
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 23 QKEEEEEGKKEKKEEEEEKKERNEELDRRRR 53
+ +E K+ + EE+ + + +E + R
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.5 bits (53), Expect = 9.8
Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 16 KSKREGRQKEEEEEGKKEKK---EEEEEKK 42
++ +E +++ E EE + K E+ E+++
Sbjct: 302 QAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 0.40
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEE------LDRRRRR 54
Q E ++ KE+K + +E+ E+ + +D + R
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKER 149
Score = 26.6 bits (59), Expect = 1.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELD 49
K + E K+ KEE+ + KE NE+L
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL 135
Score = 25.8 bits (57), Expect = 3.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEE 40
R+ KEE+ + K+E ++ +E
Sbjct: 113 TEARKQMSKEEKLKIKEENEKLLKE 137
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 29.1 bits (64), Expect = 0.41
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
++ EE + +++ E + E+L + R+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 26.0 bits (56), Expect = 3.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRR 54
++ EE +++ E E KE+ + + R+
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 27.9 bits (62), Expect = 0.46
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTF---PFLIFYTVSEVALPWIA 177
+L S+ L GV A I +++ R F + + V L I
Sbjct: 20 ILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLLGQIG 79
Query: 178 YYLADWQWISVITIFPLIVGLIVAIFTP 205
+ ++ + I I I P
Sbjct: 80 ACHVEVPYVLMGQIATFIYFAYFLIIVP 107
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 28.4 bits (63), Expect = 0.50
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 14 VPKSKREGRQKEEEEEGKKEKKEE--EEEKKERNEELDRRRRRRRRRDN 60
P ++ +++ EE+ ++ K EE+ E + + ++ D
Sbjct: 211 QPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDP 259
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 0.57
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEE------LDRRRRR 54
QKE++++ ++K++ ++E+ EE LD RR +
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQ 141
Score = 27.4 bits (61), Expect = 1.00
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEE 40
K +++ +E+++ + E+++ EE+
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.2 bits (58), Expect = 2.8
Identities = 4/26 (15%), Positives = 16/26 (61%)
Query: 24 KEEEEEGKKEKKEEEEEKKERNEELD 49
+ ++E+ K+ +E+++ + E+ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.9 bits (62), Expect = 0.63
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ +K +EE E E ++ EE R++ +
Sbjct: 45 RDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLK 85
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
halodurans [TaxId: 86665]}
Length = 155
Score = 27.6 bits (61), Expect = 0.72
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 36 EEEEEKKERNEELDRRRRRRRRR 58
+ EEEK+ R+ R++R
Sbjct: 131 QTEEEKRLYETAPARKENRKKRA 153
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 27.3 bits (60), Expect = 0.92
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 36 EEEEEKKERNEELDRRRRRRRRR 58
+ EEEK+ + R +R R+
Sbjct: 130 DTEEEKESHRIAVLRAEQRHIRK 152
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 26.4 bits (58), Expect = 0.96
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 14 VPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEEL------DRRRRRRRRR 58
+ + EE K + +E++ + D ++++R+
Sbjct: 33 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRK 83
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 22 RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
R E + E+K R LD + R
Sbjct: 137 RHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERA 173
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA)
{Thermotoga maritima [TaxId: 2336]}
Length = 535
Score = 27.8 bits (60), Expect = 1.1
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 114 TPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGP---KWRTFAMTFPFLIFYTVSE 170
P + D V+F+ G + ++ ++ +E V K+ + ++
Sbjct: 79 VPLTADDVVFTFEIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQMLINT 138
Query: 171 VALPWIAYYLADWQW 185
+P + +
Sbjct: 139 PIVPKHIWENKTEEE 153
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 26.3 bits (58), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 14 VPKSKREG--RQKEEEEEGKKEKK-----EEEEEKKER 44
VPK+ G K + EE +K + EEE ++KE
Sbjct: 58 VPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 27.0 bits (58), Expect = 1.5
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 23 QKEEEEEGKKEKKEEEEEKK-----ERNEELDRRRRRRRRRDN 60
+KE + K+ K +++E+ ++ ELD ++++ N
Sbjct: 4 KKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVN 46
Score = 27.0 bits (58), Expect = 1.5
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 18 KREGRQKEEEEEGKKEKKEEEEEKKE 43
+ + KE ++ K + ++EK++
Sbjct: 158 QNYKKLKEVSDKYTKVLNKVQKEKQD 183
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 26.1 bits (57), Expect = 1.9
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
K + + ++ ++KK+ E E E L ++R +
Sbjct: 53 KLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGE 96
>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator
RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 119
Score = 25.8 bits (56), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 154 RTFAMTFPFLIFY---TVSEVALPWIAYYLADWQWI 186
R AMT FL FY E A IA +LA W+ +
Sbjct: 20 RRLAMTRVFLFFYAEGAAEETARGEIAAFLARWRGV 55
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.0 bits (57), Expect = 2.2
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 13 IVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRR 55
++ + K ++ + + EEE + +EL + R++
Sbjct: 82 VLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQ 124
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.5 bits (56), Expect = 2.2
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 34 KKEEEEEKKERNEELDRRRR 53
K E+++E++ ++ ++ R+
Sbjct: 3 KTEQKQEQETTHKNIEEDRK 22
Score = 24.0 bits (52), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 31 KKEKKEEEEEKKERNEELDRR 51
K E+K+E+E + EE DR+
Sbjct: 3 KTEQKQEQETTHKNIEE-DRK 22
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 26.5 bits (58), Expect = 2.6
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 3/33 (9%)
Query: 28 EEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
+ G + K EE R R+
Sbjct: 324 KLGDFNLIAKT---KTELEETQRELRKEEEAKG 353
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 24.9 bits (54), Expect = 3.0
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 32 KEKKEEEEEKKERNEELDRRRRRRRRR 58
K+ ++ + + + ++L R +R +R+
Sbjct: 50 KKLEDSDRKAVHQIDQLQREQRHLKRQ 76
>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 25.2 bits (55), Expect = 5.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 37 EEEEKKERNEELDRRRRRRRRR 58
+EE+ E LD+ RR+ R +
Sbjct: 123 SQEEEVYAAERLDKIRRQNRIK 144
>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
{Bacillus subtilis [TaxId: 1423]}
Length = 504
Score = 25.8 bits (55), Expect = 5.1
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 114 TPFSKDVVLFSLSRFLT-GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVA 172
+ D V+F+ S L+ + + +E G F + + FY + +
Sbjct: 80 KELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKGDYEVLFKLKYKDGNFYNNALDS 139
Query: 173 LPWIAYYLADWQW 185
+ ++
Sbjct: 140 TAILPKHILGNVP 152
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 23.7 bits (51), Expect = 5.6
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 31 KKEKKEEEEEKKERNEELDRRRRRR 55
+ ++K ++++ +RRR +
Sbjct: 2 ELKRKTTNADRRKAATMRERRRLSK 26
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 92
Score = 24.4 bits (53), Expect = 5.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 34 KKEEEEEKKERNEELDRRRR 53
+ E + E+KE +++D R+
Sbjct: 5 QGESDPERKETRQKVDDDRK 24
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 24.0 bits (52), Expect = 5.8
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 17 SKREGRQ--KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
SK+ G Q E E +E ++ + E+ + R RR+
Sbjct: 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRK 79
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 24.8 bits (54), Expect = 5.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 14 VPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELD 49
+P+ K + EE+E K E + K R +E +
Sbjct: 77 IPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYE 112
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 25.1 bits (54), Expect = 6.5
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
+ + + K +E + ++ + ELD R R RRR
Sbjct: 206 SELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRR 248
>d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 135
Score = 24.2 bits (52), Expect = 7.9
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 77 FLGSLLGGFILSWVADRYGRITAVLGSH 104
G+L GG L+ DR I A
Sbjct: 22 HHGTLFGGTGLAL-MDRVAFIAATRFGR 48
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 24.8 bits (52), Expect = 9.2
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 114 TPFSKDVVLFSLSRFL-TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVA 172
PF + + L H + I+ ++ + + + + + E+A
Sbjct: 75 EPFDAEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAY--YPFLQELA 132
Query: 173 LPWIAYYLADWQW 185
LP ++A Q+
Sbjct: 133 LPRPFRFIAPSQF 145
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 23.6 bits (51), Expect = 9.4
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVG 197
F ++++ M F Y S + + + +V+ P+++
Sbjct: 20 TAFGLMLIVVIP-----AILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILII 74
Query: 198 LIVAIFT 204
+ +A+ T
Sbjct: 75 IFLAVLT 81
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 23.6 bits (51), Expect = 9.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 17 SKREGRQ--KEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
SKR G + E E + E + + +E + R RR+
Sbjct: 34 SKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.448
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 844,196
Number of extensions: 39720
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 77
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)