Query psy2966
Match_columns 237
No_of_seqs 211 out of 2437
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 22:07:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00898 2A0119 cation transp 100.0 2.2E-28 4.8E-33 208.9 23.7 227 1-233 119-345 (505)
2 KOG0255|consensus 100.0 5.6E-28 1.2E-32 207.2 23.6 232 1-234 110-341 (521)
3 TIGR01299 synapt_SV2 synaptic 100.0 2.7E-26 5.8E-31 200.9 22.1 225 8-234 201-464 (742)
4 KOG0569|consensus 99.9 3.8E-26 8.2E-31 189.5 21.2 214 10-229 61-283 (485)
5 TIGR00887 2A0109 phosphate:H+ 99.9 4.6E-24 9.9E-29 182.2 18.6 162 8-170 55-249 (502)
6 KOG0254|consensus 99.9 1E-23 2.2E-28 180.5 20.1 217 10-231 90-310 (513)
7 KOG0253|consensus 99.9 7.8E-23 1.7E-27 161.0 16.3 225 8-236 112-347 (528)
8 PF00083 Sugar_tr: Sugar (and 99.9 4.6E-27 1E-31 198.1 -13.6 162 9-171 46-216 (451)
9 TIGR00879 SP MFS transporter, 99.9 8.6E-21 1.9E-25 160.3 20.1 159 8-167 70-237 (481)
10 PRK10077 xylE D-xylose transpo 99.9 2.8E-21 6.2E-26 164.1 16.5 161 8-169 54-237 (479)
11 TIGR02332 HpaX 4-hydroxyphenyl 99.9 3.2E-20 7E-25 154.9 18.6 148 2-151 37-194 (412)
12 COG2814 AraJ Arabinose efflux 99.9 1.3E-20 2.8E-25 152.4 15.3 189 2-235 42-234 (394)
13 PRK10642 proline/glycine betai 99.9 4.9E-20 1.1E-24 157.0 18.9 138 15-153 63-219 (490)
14 PRK10406 alpha-ketoglutarate t 99.8 2.5E-19 5.5E-24 150.4 18.4 137 14-151 68-223 (432)
15 TIGR00903 2A0129 major facilit 99.8 8E-20 1.7E-24 150.1 14.6 146 3-151 21-170 (368)
16 COG2271 UhpC Sugar phosphate p 99.8 2.1E-20 4.5E-25 150.2 9.7 204 7-231 62-272 (448)
17 KOG2532|consensus 99.8 1.6E-19 3.5E-24 151.2 15.5 192 8-223 72-270 (466)
18 TIGR00893 2A0114 d-galactonate 99.8 1.1E-19 2.3E-24 149.8 13.6 142 8-150 28-173 (399)
19 PRK15403 multidrug efflux syst 99.8 1.9E-19 4.1E-24 150.3 15.1 142 8-150 50-195 (413)
20 PRK03545 putative arabinose tr 99.8 4.9E-19 1.1E-23 146.7 16.9 146 2-149 38-187 (390)
21 KOG2533|consensus 99.8 2.8E-19 6E-24 150.3 13.9 210 2-233 75-295 (495)
22 TIGR00894 2A0114euk Na(+)-depe 99.8 5.8E-19 1.2E-23 149.6 15.9 143 8-151 75-224 (465)
23 PRK12307 putative sialic acid 99.8 8.6E-19 1.9E-23 146.8 16.6 146 3-150 48-196 (426)
24 PRK10213 nepI ribonucleoside t 99.8 1.6E-18 3.4E-23 144.0 17.8 141 8-149 54-198 (394)
25 PRK09952 shikimate transporter 99.8 2.2E-18 4.7E-23 145.0 18.3 135 17-152 72-225 (438)
26 TIGR00895 2A0115 benzoate tran 99.8 1.7E-18 3.6E-23 143.2 16.6 148 8-156 51-202 (398)
27 TIGR00891 2A0112 putative sial 99.8 1.3E-18 2.9E-23 144.2 15.5 145 8-153 46-195 (405)
28 TIGR00881 2A0104 phosphoglycer 99.8 1.2E-19 2.7E-24 148.9 9.0 143 8-151 29-176 (379)
29 PRK11663 regulatory protein Uh 99.8 2.2E-18 4.7E-23 144.9 16.1 143 8-151 57-203 (434)
30 TIGR00900 2A0121 H+ Antiporter 99.8 1.3E-18 2.8E-23 142.2 14.1 136 8-144 33-176 (365)
31 PF07690 MFS_1: Major Facilita 99.8 1.7E-18 3.6E-23 141.0 13.7 141 8-149 31-175 (352)
32 PRK14995 methyl viologen resis 99.8 1.9E-17 4.1E-22 141.3 20.3 147 2-150 35-186 (495)
33 PRK11195 lysophospholipid tran 99.8 2.3E-17 5E-22 136.9 18.3 139 8-150 37-177 (393)
34 PRK11273 glpT sn-glycerol-3-ph 99.8 1.3E-17 2.8E-22 140.9 16.8 143 8-151 62-213 (452)
35 TIGR00711 efflux_EmrB drug res 99.8 6.7E-18 1.5E-22 143.6 14.9 142 8-150 36-181 (485)
36 PRK09556 uhpT sugar phosphate 99.8 2.8E-18 6.1E-23 145.5 11.1 147 3-151 59-217 (467)
37 TIGR00890 2A0111 Oxalate/Forma 99.8 9E-18 2E-22 137.7 13.7 140 8-149 37-180 (377)
38 TIGR00710 efflux_Bcr_CflA drug 99.8 1.7E-17 3.7E-22 136.9 15.3 142 8-150 39-184 (385)
39 PRK09705 cynX putative cyanate 99.8 2.9E-17 6.3E-22 136.3 16.5 129 8-138 43-175 (393)
40 KOG1330|consensus 99.8 2.9E-20 6.2E-25 150.7 -1.5 142 8-150 67-213 (493)
41 PRK11551 putative 3-hydroxyphe 99.8 2E-17 4.2E-22 137.8 15.5 147 8-155 49-199 (406)
42 KOG2615|consensus 99.8 1.2E-17 2.7E-22 132.4 13.3 141 7-149 66-216 (451)
43 PRK10473 multidrug efflux syst 99.8 3.9E-17 8.5E-22 135.4 15.9 146 3-150 33-182 (392)
44 PRK11102 bicyclomycin/multidru 99.8 3.2E-17 6.9E-22 135.1 15.2 142 8-150 25-170 (377)
45 PRK10091 MFS transport protein 99.8 7.3E-17 1.6E-21 133.4 17.1 141 8-149 37-181 (382)
46 TIGR00886 2A0108 nitrite extru 99.8 4.3E-17 9.2E-22 133.7 15.4 145 3-150 32-192 (366)
47 TIGR00712 glpT glycerol-3-phos 99.7 3.4E-17 7.4E-22 137.8 14.9 143 8-151 60-211 (438)
48 PRK15402 multidrug efflux syst 99.7 7.1E-17 1.5E-21 134.5 16.1 146 3-150 43-192 (406)
49 PLN00028 nitrate transmembrane 99.7 4.6E-17 9.9E-22 138.3 14.9 143 3-148 66-220 (476)
50 TIGR00806 rfc RFC reduced fola 99.7 9.4E-17 2E-21 132.6 15.5 148 3-153 56-209 (511)
51 PRK11652 emrD multidrug resist 99.7 1.2E-16 2.7E-21 132.6 16.3 146 3-150 38-187 (394)
52 PRK15075 citrate-proton sympor 99.7 4.8E-16 1E-20 130.7 18.9 113 22-135 69-200 (434)
53 PRK11043 putative transporter; 99.7 1.9E-16 4.1E-21 131.7 16.3 141 8-149 40-183 (401)
54 PRK10642 proline/glycine betai 99.7 7.6E-17 1.7E-21 137.5 14.1 161 9-170 286-458 (490)
55 TIGR00883 2A0106 metabolite-pr 99.7 3.5E-16 7.6E-21 129.1 17.3 131 20-151 46-195 (394)
56 TIGR00805 oat sodium-independe 99.7 1.2E-17 2.6E-22 145.7 8.3 141 8-149 67-283 (633)
57 PRK03893 putative sialic acid 99.7 1.3E-16 2.8E-21 136.2 14.3 145 8-153 54-201 (496)
58 PRK10054 putative transporter; 99.7 1.9E-16 4.1E-21 131.6 14.8 141 8-149 42-185 (395)
59 PRK15034 nitrate/nitrite trans 99.7 6.8E-16 1.5E-20 128.9 16.6 114 3-119 65-187 (462)
60 TIGR00885 fucP L-fucose:H+ sym 99.7 5.4E-16 1.2E-20 129.3 16.1 134 8-142 37-202 (410)
61 TIGR00899 2A0120 sugar efflux 99.7 9.1E-16 2E-20 126.2 16.8 143 8-151 32-181 (375)
62 PRK10133 L-fucose transporter; 99.7 7.2E-16 1.6E-20 129.7 16.1 116 3-120 56-174 (438)
63 PRK11646 multidrug resistance 99.7 1.1E-15 2.5E-20 127.1 16.1 140 8-148 45-187 (400)
64 PRK10504 putative transporter; 99.7 4.2E-15 9.2E-20 126.2 19.6 141 8-149 44-188 (471)
65 KOG0252|consensus 99.7 1E-16 2.2E-21 130.0 8.3 144 9-153 84-252 (538)
66 PRK03699 putative transporter; 99.7 2.5E-15 5.5E-20 124.8 16.6 133 8-141 41-177 (394)
67 TIGR00892 2A0113 monocarboxyla 99.7 5.1E-16 1.1E-20 131.2 12.3 141 3-146 49-193 (455)
68 PRK12382 putative transporter; 99.7 1.4E-15 2.9E-20 126.2 13.8 133 3-137 46-189 (392)
69 PRK09874 drug efflux system pr 99.7 7.1E-15 1.5E-19 122.4 16.9 137 11-149 56-196 (408)
70 PRK03633 putative MFS family t 99.7 6.5E-15 1.4E-19 121.8 16.5 119 3-123 36-154 (381)
71 KOG3764|consensus 99.7 5.3E-16 1.1E-20 123.9 9.2 142 6-148 103-248 (464)
72 TIGR00896 CynX cyanate transpo 99.7 7.6E-15 1.6E-19 120.2 16.2 131 3-137 30-165 (355)
73 PRK05122 major facilitator sup 99.6 2.1E-15 4.5E-20 125.4 12.6 141 7-148 49-200 (399)
74 TIGR00897 2A0118 polyol permea 99.6 6.9E-15 1.5E-19 122.5 15.4 114 8-122 47-165 (402)
75 TIGR01299 synapt_SV2 synaptic 99.6 4.3E-15 9.4E-20 130.8 14.1 139 11-150 597-737 (742)
76 PRK08633 2-acyl-glycerophospho 99.6 2.5E-15 5.5E-20 140.0 13.4 142 9-151 47-204 (1146)
77 PRK10489 enterobactin exporter 99.6 2.1E-15 4.6E-20 126.1 10.9 143 7-150 50-200 (417)
78 PTZ00207 hypothetical protein; 99.6 1.3E-14 2.9E-19 124.5 14.0 155 8-165 61-226 (591)
79 PRK06814 acylglycerophosphoeth 99.6 6.5E-15 1.4E-19 137.3 13.2 141 9-150 52-198 (1140)
80 cd06174 MFS The Major Facilita 99.6 9.2E-15 2E-19 118.6 12.4 140 7-147 32-174 (352)
81 TIGR00880 2_A_01_02 Multidrug 99.6 9.2E-15 2E-19 103.1 10.1 133 15-148 4-140 (141)
82 PF06609 TRI12: Fungal trichot 99.6 4.3E-14 9.4E-19 120.8 13.6 130 9-140 78-210 (599)
83 PRK10207 dipeptide/tripeptide 99.6 3.9E-14 8.5E-19 120.5 12.5 138 8-146 49-193 (489)
84 PRK11902 ampG muropeptide tran 99.6 1.1E-13 2.4E-18 115.3 14.9 140 8-150 33-185 (402)
85 TIGR00901 2A0125 AmpG-related 99.6 1.3E-13 2.9E-18 112.9 14.3 139 8-149 22-181 (356)
86 TIGR00924 yjdL_sub1_fam amino 99.6 5.1E-14 1.1E-18 119.6 12.1 141 3-145 43-190 (475)
87 COG2223 NarK Nitrate/nitrite t 99.5 2.7E-13 5.8E-18 109.5 15.1 145 3-150 44-197 (417)
88 PRK11010 ampG muropeptide tran 99.5 5.4E-13 1.2E-17 113.8 16.1 126 24-150 60-198 (491)
89 PRK11128 putative 3-phenylprop 99.5 2.4E-13 5.3E-18 112.5 13.4 138 7-149 37-181 (382)
90 TIGR00882 2A0105 oligosacchari 99.5 4.4E-13 9.5E-18 111.4 13.2 139 8-149 37-186 (396)
91 TIGR00902 2A0127 phenyl propri 99.5 7.2E-13 1.6E-17 109.7 13.4 129 3-135 34-167 (382)
92 KOG2504|consensus 99.5 4.2E-13 9.1E-18 114.1 9.9 140 4-146 77-220 (509)
93 TIGR01301 GPH_sucrose GPH fami 99.4 4.4E-12 9.6E-17 106.8 14.9 142 8-150 38-222 (477)
94 PRK15011 sugar efflux transpor 99.4 1.6E-11 3.6E-16 102.0 17.3 141 8-150 50-198 (393)
95 COG0738 FucP Fucose permease [ 99.4 1.5E-11 3.3E-16 99.0 14.5 114 8-122 47-163 (422)
96 PRK05122 major facilitator sup 99.4 7.5E-12 1.6E-16 104.1 13.1 138 11-149 251-391 (399)
97 TIGR00792 gph sugar (Glycoside 99.4 8.2E-12 1.8E-16 105.0 13.1 141 8-149 34-197 (437)
98 PRK09528 lacY galactoside perm 99.4 3.1E-12 6.8E-17 107.1 10.4 141 9-149 262-406 (420)
99 PRK09528 lacY galactoside perm 99.4 6E-12 1.3E-16 105.4 11.8 136 8-146 45-190 (420)
100 TIGR00889 2A0110 nucleoside tr 99.4 9.6E-12 2.1E-16 104.2 12.9 141 9-149 251-405 (418)
101 PRK15462 dipeptide/tripeptide 99.4 7.1E-12 1.5E-16 106.0 11.9 134 8-142 44-184 (493)
102 PRK15011 sugar efflux transpor 99.4 1.3E-11 2.9E-16 102.5 13.3 139 8-148 251-392 (393)
103 PRK09584 tppB putative tripept 99.4 9.8E-12 2.1E-16 106.3 12.6 130 8-138 56-192 (500)
104 cd06174 MFS The Major Facilita 99.4 1.2E-11 2.6E-16 100.3 12.0 137 8-145 210-350 (352)
105 PF05977 MFS_3: Transmembrane 99.3 6.4E-11 1.4E-15 101.3 16.6 138 6-144 42-187 (524)
106 TIGR00889 2A0110 nucleoside tr 99.3 1.6E-11 3.4E-16 102.9 12.4 142 3-150 33-183 (418)
107 PRK09952 shikimate transporter 99.3 3E-11 6.5E-16 101.8 13.9 136 14-149 291-435 (438)
108 PRK11551 putative 3-hydroxyphe 99.3 1.9E-11 4.1E-16 101.8 12.5 140 8-148 254-397 (406)
109 TIGR00890 2A0111 Oxalate/Forma 99.3 2.1E-11 4.6E-16 100.0 10.7 131 8-139 239-374 (377)
110 PRK12382 putative transporter; 99.3 5.8E-11 1.3E-15 98.6 12.6 132 11-143 251-385 (392)
111 TIGR00899 2A0120 sugar efflux 99.3 9.3E-11 2E-15 96.5 13.3 139 8-148 234-375 (375)
112 TIGR00898 2A0119 cation transp 99.3 6.2E-11 1.3E-15 101.6 12.4 135 14-149 360-497 (505)
113 PRK09874 drug efflux system pr 99.3 5.4E-11 1.2E-15 99.1 11.2 132 12-144 261-395 (408)
114 PRK09556 uhpT sugar phosphate 99.2 1.6E-10 3.6E-15 98.1 12.9 136 8-144 293-446 (467)
115 TIGR00887 2A0109 phosphate:H+ 99.2 2.1E-10 4.6E-15 98.3 13.2 133 17-150 343-492 (502)
116 TIGR00892 2A0113 monocarboxyla 99.2 6.7E-11 1.5E-15 100.2 9.3 132 8-140 275-414 (455)
117 PRK10489 enterobactin exporter 99.2 2.8E-10 6E-15 95.3 12.7 142 8-150 258-403 (417)
118 PRK10406 alpha-ketoglutarate t 99.2 3.8E-10 8.3E-15 95.0 12.6 140 9-148 279-425 (432)
119 PRK10077 xylE D-xylose transpo 99.2 1E-09 2.2E-14 93.5 14.6 138 11-149 308-460 (479)
120 PRK03893 putative sialic acid 99.2 8.7E-11 1.9E-15 100.4 7.9 125 8-133 310-439 (496)
121 KOG0253|consensus 99.1 1E-10 2.2E-15 93.3 6.6 132 17-149 389-521 (528)
122 TIGR00879 SP MFS transporter, 99.1 4.5E-10 9.7E-15 94.9 10.8 141 9-150 319-474 (481)
123 TIGR00902 2A0127 phenyl propri 99.1 1.6E-09 3.5E-14 89.7 13.7 132 8-141 239-373 (382)
124 PF11700 ATG22: Vacuole efflux 99.1 2.2E-09 4.7E-14 91.0 14.0 141 8-149 316-470 (477)
125 TIGR02718 sider_RhtX_FptX side 99.1 5.9E-09 1.3E-13 86.5 16.3 141 8-149 35-186 (390)
126 PRK03545 putative arabinose tr 99.1 3.4E-09 7.3E-14 88.0 14.4 133 8-143 240-376 (390)
127 PLN00028 nitrate transmembrane 99.1 7E-10 1.5E-14 94.5 10.5 138 8-147 287-433 (476)
128 PRK03633 putative MFS family t 99.1 2.3E-09 5.1E-14 88.7 13.3 133 8-144 234-369 (381)
129 TIGR00883 2A0106 metabolite-pr 99.1 5.4E-10 1.2E-14 92.2 9.5 128 8-135 254-389 (394)
130 KOG0569|consensus 99.1 5.2E-09 1.1E-13 87.9 15.2 140 8-149 304-457 (485)
131 COG2807 CynX Cyanate permease 99.1 1.3E-08 2.9E-13 81.2 16.0 138 3-144 42-183 (395)
132 PRK09669 putative symporter Ya 99.1 4.9E-09 1.1E-13 88.6 14.6 141 8-149 44-207 (444)
133 PRK03699 putative transporter; 99.1 1.8E-09 4E-14 89.7 11.8 140 8-149 240-382 (394)
134 TIGR00893 2A0114 d-galactonate 99.1 2.2E-09 4.7E-14 88.4 11.9 133 8-142 250-394 (399)
135 KOG2325|consensus 99.1 8.1E-09 1.8E-13 86.3 15.1 147 2-151 65-234 (488)
136 TIGR00792 gph sugar (Glycoside 99.1 4.9E-09 1.1E-13 88.2 14.1 114 8-122 256-377 (437)
137 TIGR00891 2A0112 putative sial 99.1 1.3E-09 2.7E-14 90.5 10.0 115 8-123 273-388 (405)
138 PF13347 MFS_2: MFS/sugar tran 99.1 2.2E-09 4.7E-14 90.3 11.5 140 8-148 36-200 (428)
139 COG2270 Permeases of the major 99.0 1.2E-09 2.6E-14 88.8 9.1 141 8-149 287-431 (438)
140 PRK10504 putative transporter; 99.0 2.7E-09 5.8E-14 90.8 11.6 114 8-122 296-412 (471)
141 TIGR00900 2A0121 H+ Antiporter 99.0 2.8E-09 6.1E-14 87.1 10.6 114 8-122 246-360 (365)
142 PRK09705 cynX putative cyanate 99.0 9.3E-09 2E-13 85.6 13.7 140 8-150 239-385 (393)
143 TIGR00895 2A0115 benzoate tran 99.0 3.4E-09 7.3E-14 87.6 10.9 113 8-122 284-397 (398)
144 TIGR00897 2A0118 polyol permea 99.0 9.5E-09 2.1E-13 85.7 13.6 136 8-146 256-400 (402)
145 PF05977 MFS_3: Transmembrane 99.0 7.5E-09 1.6E-13 88.7 13.2 131 8-139 253-386 (524)
146 PRK10429 melibiose:sodium symp 99.0 1.1E-08 2.3E-13 87.3 12.7 103 8-111 41-155 (473)
147 PRK12307 putative sialic acid 99.0 1.2E-08 2.7E-13 85.5 12.9 114 9-123 266-381 (426)
148 TIGR00788 fbt folate/biopterin 99.0 7.3E-09 1.6E-13 88.1 11.5 144 3-150 56-212 (468)
149 PRK11273 glpT sn-glycerol-3-ph 99.0 1.4E-08 3E-13 86.0 13.1 135 9-144 289-432 (452)
150 PRK15075 citrate-proton sympor 99.0 1.3E-08 2.8E-13 85.8 12.8 115 8-122 273-391 (434)
151 TIGR00882 2A0105 oligosacchari 98.9 8.5E-09 1.8E-13 85.8 10.9 132 9-140 254-388 (396)
152 PF03825 Nuc_H_symport: Nucleo 98.9 2.9E-08 6.3E-13 82.5 12.7 87 7-93 35-122 (400)
153 PRK11128 putative 3-phenylprop 98.9 4E-08 8.7E-13 81.4 13.4 115 8-123 239-353 (382)
154 PRK11010 ampG muropeptide tran 98.9 3.4E-08 7.4E-13 84.5 12.8 141 8-149 257-405 (491)
155 COG3104 PTR2 Dipeptide/tripept 98.9 3.9E-08 8.6E-13 81.7 12.0 141 5-147 58-206 (498)
156 PRK08633 2-acyl-glycerophospho 98.9 2.9E-08 6.2E-13 93.2 12.6 112 10-122 270-381 (1146)
157 PF06813 Nodulin-like: Nodulin 98.9 4.7E-08 1E-12 75.6 11.6 141 8-150 36-185 (250)
158 PRK10429 melibiose:sodium symp 98.9 1E-07 2.2E-12 81.3 14.5 112 8-120 265-388 (473)
159 TIGR00710 efflux_Bcr_CflA drug 98.8 9.2E-08 2E-12 78.9 13.3 111 8-119 241-356 (385)
160 PRK11663 regulatory protein Uh 98.8 5.2E-08 1.1E-12 82.2 12.0 135 8-143 278-420 (434)
161 PRK09848 glucuronide transport 98.8 2.8E-07 6E-12 78.0 15.7 106 15-121 270-384 (448)
162 TIGR02332 HpaX 4-hydroxyphenyl 98.8 4.3E-08 9.3E-13 82.1 10.4 127 8-135 278-409 (412)
163 PF03137 OATP: Organic Anion T 98.8 7.8E-10 1.7E-14 95.0 -0.1 141 8-149 37-252 (539)
164 KOG2504|consensus 98.8 2.5E-08 5.5E-13 85.1 9.0 139 8-147 332-476 (509)
165 TIGR00711 efflux_EmrB drug res 98.8 5.1E-08 1.1E-12 83.1 10.8 114 8-122 290-407 (485)
166 PRK11646 multidrug resistance 98.8 7.3E-08 1.6E-12 80.4 11.1 115 8-123 242-357 (400)
167 TIGR02718 sider_RhtX_FptX side 98.8 1.7E-07 3.8E-12 77.8 13.2 132 8-140 242-384 (390)
168 PRK10054 putative transporter; 98.8 7.4E-08 1.6E-12 80.2 10.5 124 10-135 245-372 (395)
169 TIGR00903 2A0129 major facilit 98.8 1.5E-07 3.3E-12 77.6 12.1 134 12-149 229-367 (368)
170 PRK10091 MFS transport protein 98.8 3E-07 6.5E-12 76.2 13.7 133 8-143 234-372 (382)
171 PRK11195 lysophospholipid tran 98.7 2.2E-07 4.9E-12 77.3 12.5 113 8-122 240-353 (393)
172 PRK11102 bicyclomycin/multidru 98.7 2.7E-07 5.7E-12 76.1 12.9 115 8-123 229-347 (377)
173 COG0477 ProP Permeases of the 98.7 5.1E-07 1.1E-11 71.2 14.1 126 10-136 40-174 (338)
174 KOG0254|consensus 98.7 3E-07 6.6E-12 79.2 13.6 138 12-149 332-486 (513)
175 PRK14995 methyl viologen resis 98.7 8.7E-08 1.9E-12 82.2 10.2 114 8-122 294-410 (495)
176 TIGR00901 2A0125 AmpG-related 98.7 5.6E-08 1.2E-12 79.7 8.6 95 8-102 243-349 (356)
177 PRK11462 putative transporter; 98.7 7.6E-07 1.7E-11 75.7 15.6 107 8-115 44-162 (460)
178 PRK09669 putative symporter Ya 98.7 4.2E-07 9E-12 76.9 13.7 111 10-121 265-384 (444)
179 TIGR00712 glpT glycerol-3-phos 98.7 8.1E-08 1.7E-12 81.1 9.2 141 8-149 286-436 (438)
180 PRK09848 glucuronide transport 98.7 9.5E-07 2.1E-11 74.8 15.7 114 8-122 43-174 (448)
181 PF05631 DUF791: Protein of un 98.7 5.5E-07 1.2E-11 72.4 12.9 141 8-149 68-219 (354)
182 PRK15402 multidrug efflux syst 98.7 3.6E-07 7.9E-12 76.3 12.3 113 8-122 250-367 (406)
183 PRK11902 ampG muropeptide tran 98.7 3.4E-07 7.4E-12 76.4 11.7 134 8-143 244-386 (402)
184 COG2814 AraJ Arabinose efflux 98.7 1E-06 2.2E-11 72.3 13.9 136 7-145 245-384 (394)
185 PRK06814 acylglycerophosphoeth 98.7 1.7E-07 3.8E-12 88.0 10.8 114 8-122 260-393 (1140)
186 COG2271 UhpC Sugar phosphate p 98.7 1E-07 2.3E-12 77.7 8.0 134 8-142 287-429 (448)
187 PF01306 LacY_symp: LacY proto 98.7 3E-07 6.5E-12 76.0 10.7 141 9-149 259-403 (412)
188 PRK09584 tppB putative tripept 98.7 7.7E-07 1.7E-11 76.4 13.7 109 11-120 318-439 (500)
189 PF01770 Folate_carrier: Reduc 98.6 2E-07 4.2E-12 76.7 9.4 130 21-152 53-187 (412)
190 PF07690 MFS_1: Major Facilita 98.6 2.3E-07 5E-12 75.4 9.6 107 9-116 243-352 (352)
191 PF03825 Nuc_H_symport: Nucleo 98.6 1.1E-06 2.3E-11 73.2 13.4 140 10-149 244-398 (400)
192 KOG0252|consensus 98.6 9.8E-08 2.1E-12 78.6 6.3 128 19-150 358-501 (538)
193 PF13347 MFS_2: MFS/sugar tran 98.6 4.3E-07 9.4E-12 76.4 10.3 114 6-120 257-379 (428)
194 PRK10473 multidrug efflux syst 98.6 8.7E-07 1.9E-11 73.6 11.9 112 8-122 238-350 (392)
195 PRK10213 nepI ribonucleoside t 98.6 1.8E-06 4E-11 71.9 13.7 127 8-136 251-380 (394)
196 TIGR01272 gluP glucose/galacto 98.6 8.4E-07 1.8E-11 71.5 10.9 111 8-122 177-287 (310)
197 PRK11462 putative transporter; 98.6 2.7E-06 5.9E-11 72.3 14.4 85 8-92 262-348 (460)
198 TIGR00881 2A0104 phosphoglycer 98.6 2.3E-07 5.1E-12 76.0 7.7 114 8-122 251-369 (379)
199 TIGR00894 2A0114euk Na(+)-depe 98.5 6.8E-07 1.5E-11 76.0 10.2 138 8-147 296-450 (465)
200 TIGR00896 CynX cyanate transpo 98.5 1E-06 2.2E-11 72.2 10.7 113 8-122 231-345 (355)
201 PF11700 ATG22: Vacuole efflux 98.5 1.5E-05 3.2E-10 68.0 17.9 141 10-151 71-252 (477)
202 PF00083 Sugar_tr: Sugar (and 98.5 1.7E-09 3.7E-14 91.4 -6.6 132 17-149 294-439 (451)
203 KOG3626|consensus 98.5 3.4E-07 7.3E-12 80.0 7.4 140 10-150 133-346 (735)
204 KOG2563|consensus 98.5 7.3E-06 1.6E-10 67.6 14.3 114 9-122 79-203 (480)
205 COG2211 MelB Na+/melibiose sym 98.5 6.8E-06 1.5E-10 68.9 14.2 85 9-93 272-358 (467)
206 PRK15034 nitrate/nitrite trans 98.5 2.4E-06 5.2E-11 72.1 11.6 118 17-135 294-442 (462)
207 PRK10133 L-fucose transporter; 98.5 1.8E-06 4E-11 72.9 11.1 111 8-122 294-404 (438)
208 KOG2816|consensus 98.5 1.6E-06 3.4E-11 73.2 10.6 127 17-149 70-202 (463)
209 COG2223 NarK Nitrate/nitrite t 98.4 1.5E-06 3.3E-11 70.9 9.2 134 8-143 253-397 (417)
210 TIGR01272 gluP glucose/galacto 98.4 3.1E-06 6.6E-11 68.3 10.9 87 58-145 6-111 (310)
211 TIGR00924 yjdL_sub1_fam amino 98.4 6.1E-06 1.3E-10 70.5 13.0 128 11-139 314-460 (475)
212 TIGR00788 fbt folate/biopterin 98.4 1.3E-06 2.8E-11 74.5 8.6 140 8-148 287-447 (468)
213 PF01306 LacY_symp: LacY proto 98.4 5.5E-06 1.2E-10 68.6 11.0 84 8-91 42-133 (412)
214 COG2211 MelB Na+/melibiose sym 98.4 3E-05 6.5E-10 65.1 15.1 140 9-149 48-210 (467)
215 TIGR00926 2A1704 Peptide:H+ sy 98.4 2.8E-05 6.2E-10 68.6 15.8 132 10-142 24-177 (654)
216 KOG4686|consensus 98.3 2.2E-06 4.7E-11 66.8 7.6 136 9-146 300-442 (459)
217 PRK11043 putative transporter; 98.3 2.1E-05 4.5E-10 65.6 14.1 113 8-122 237-354 (401)
218 PF05978 UNC-93: Ion channel r 98.3 1.1E-05 2.3E-10 58.0 10.5 104 12-117 40-143 (156)
219 KOG0255|consensus 98.3 7.7E-06 1.7E-10 70.7 10.9 136 14-150 355-496 (521)
220 KOG3762|consensus 98.3 1.6E-06 3.6E-11 72.8 6.0 133 9-141 406-541 (618)
221 PRK10207 dipeptide/tripeptide 98.3 1.4E-05 2.9E-10 68.6 11.8 108 12-120 312-436 (489)
222 TIGR00885 fucP L-fucose:H+ sym 98.2 1.8E-05 3.8E-10 66.4 11.1 107 12-122 272-378 (410)
223 PRK11652 emrD multidrug resist 98.2 3E-05 6.5E-10 64.5 12.3 114 8-123 242-358 (394)
224 PF03209 PUCC: PUCC protein; 98.2 7.2E-05 1.6E-09 61.4 13.3 111 10-122 16-148 (403)
225 TIGR00886 2A0108 nitrite extru 98.1 7.4E-06 1.6E-10 67.2 6.6 98 8-107 260-361 (366)
226 COG2807 CynX Cyanate permease 98.1 0.00017 3.6E-09 58.3 13.0 132 8-141 242-379 (395)
227 TIGR01301 GPH_sucrose GPH fami 98.0 0.00012 2.6E-09 62.3 11.7 137 13-150 309-475 (477)
228 KOG3764|consensus 98.0 2.1E-05 4.6E-10 64.1 6.4 132 6-138 303-445 (464)
229 TIGR00769 AAA ADP/ATP carrier 97.9 0.00059 1.3E-08 58.0 14.3 113 9-122 43-188 (472)
230 PF03092 BT1: BT1 family; Int 97.9 0.00023 4.9E-09 60.2 11.6 139 8-148 24-177 (433)
231 KOG4686|consensus 97.9 1.1E-05 2.3E-10 63.1 3.2 104 10-114 80-187 (459)
232 KOG2532|consensus 97.9 4.3E-05 9.3E-10 64.9 6.9 136 8-146 293-446 (466)
233 PF03209 PUCC: PUCC protein; 97.8 0.0012 2.5E-08 54.4 14.2 132 8-140 243-391 (403)
234 PF06609 TRI12: Fungal trichot 97.8 0.0005 1.1E-08 59.9 12.4 105 10-115 350-457 (599)
235 KOG3098|consensus 97.7 0.00089 1.9E-08 56.4 11.9 92 15-107 56-147 (461)
236 KOG2533|consensus 97.7 0.0001 2.2E-09 62.9 6.2 122 8-129 308-438 (495)
237 COG2270 Permeases of the major 97.6 0.0014 3.1E-08 54.1 12.0 102 7-108 56-161 (438)
238 COG0738 FucP Fucose permease [ 97.5 0.00061 1.3E-08 55.8 8.0 113 7-123 270-382 (422)
239 PF06779 DUF1228: Protein of u 97.5 0.00028 6.1E-09 44.9 4.7 59 7-65 25-83 (85)
240 PF02487 CLN3: CLN3 protein; 97.5 0.0014 3.1E-08 54.3 10.0 132 12-149 62-198 (402)
241 PRK15462 dipeptide/tripeptide 97.4 0.0044 9.5E-08 53.2 12.3 112 10-122 309-437 (493)
242 PTZ00207 hypothetical protein; 97.4 0.0059 1.3E-07 53.5 12.9 128 14-144 396-549 (591)
243 KOG0637|consensus 97.4 0.00039 8.6E-09 57.8 5.5 105 18-123 76-203 (498)
244 PRK15403 multidrug efflux syst 97.3 0.0049 1.1E-07 51.8 11.7 112 8-122 253-370 (413)
245 TIGR00939 2a57 Equilibrative N 97.2 0.0052 1.1E-07 52.0 11.0 78 17-95 53-138 (437)
246 KOG2816|consensus 97.1 0.0056 1.2E-07 52.1 10.0 113 8-122 276-389 (463)
247 PF12832 MFS_1_like: MFS_1 lik 97.0 0.00063 1.4E-08 42.7 2.8 41 8-48 34-74 (77)
248 PF00854 PTR2: POT family; In 96.9 0.0075 1.6E-07 49.9 9.2 105 40-145 2-121 (372)
249 PF03219 TLC: TLC ATP/ADP tran 96.8 0.082 1.8E-06 45.4 14.3 101 21-122 71-203 (491)
250 KOG2615|consensus 96.8 0.0074 1.6E-07 49.4 7.5 117 8-125 296-414 (451)
251 PF03092 BT1: BT1 family; Int 96.7 0.0057 1.2E-07 51.8 6.8 142 8-150 254-416 (433)
252 KOG3098|consensus 96.7 0.069 1.5E-06 45.3 12.9 104 10-115 280-404 (461)
253 PF02487 CLN3: CLN3 protein; 96.6 0.031 6.7E-07 46.5 10.1 110 9-123 281-395 (402)
254 KOG3810|consensus 96.3 0.023 5E-07 46.1 7.6 129 24-154 57-190 (433)
255 PF13000 Acatn: Acetyl-coenzym 96.1 0.031 6.6E-07 47.5 7.5 42 80-122 136-177 (544)
256 KOG4332|consensus 95.9 0.0079 1.7E-07 47.1 3.2 70 21-91 84-154 (454)
257 PRK03612 spermidine synthase; 95.7 0.36 7.8E-06 42.0 12.7 28 8-35 49-76 (521)
258 COG3104 PTR2 Dipeptide/tripept 95.6 0.2 4.3E-06 42.7 10.3 110 10-120 325-451 (498)
259 KOG3574|consensus 95.2 0.19 4.1E-06 41.6 8.8 92 26-118 80-188 (510)
260 KOG3880|consensus 95.2 0.015 3.3E-07 46.3 2.4 130 12-149 65-202 (409)
261 KOG2563|consensus 95.0 0.018 4E-07 48.1 2.6 107 9-115 301-412 (480)
262 KOG1237|consensus 94.5 0.26 5.6E-06 43.3 8.4 128 12-140 76-238 (571)
263 PF06963 FPN1: Ferroportin1 (F 93.2 2.7 5.9E-05 35.7 12.0 38 13-50 42-79 (432)
264 COG3202 ATP/ADP translocase [E 93.0 5.5 0.00012 34.3 14.7 113 12-125 64-210 (509)
265 KOG3880|consensus 92.7 0.75 1.6E-05 37.1 7.5 113 8-125 287-404 (409)
266 KOG3762|consensus 92.3 0.096 2.1E-06 45.0 2.3 51 8-58 45-96 (618)
267 PF06963 FPN1: Ferroportin1 (F 91.4 3 6.5E-05 35.4 10.2 112 8-120 292-413 (432)
268 KOG1330|consensus 91.1 0.34 7.3E-06 41.0 4.2 113 9-121 283-408 (493)
269 PF07672 MFS_Mycoplasma: Mycop 89.4 9 0.0002 30.1 10.4 94 13-106 145-250 (267)
270 PF01733 Nucleoside_tran: Nucl 89.2 0.11 2.4E-06 41.9 0.0 76 70-151 5-88 (309)
271 KOG1479|consensus 89.0 5.7 0.00012 33.3 9.7 108 10-118 283-398 (406)
272 TIGR00939 2a57 Equilibrative N 88.6 7.1 0.00015 33.3 10.3 58 60-118 370-427 (437)
273 COG5336 Uncharacterized protei 85.8 1.5 3.3E-05 29.0 3.7 38 11-48 44-82 (116)
274 PF07672 MFS_Mycoplasma: Mycop 84.2 1.1 2.3E-05 35.1 2.9 24 123-146 38-61 (267)
275 KOG1479|consensus 84.1 21 0.00046 30.1 10.5 84 62-151 117-208 (406)
276 PF01770 Folate_carrier: Reduc 83.2 6.6 0.00014 33.1 7.3 95 8-102 284-380 (412)
277 TIGR00806 rfc RFC reduced fola 83.0 4.4 9.6E-05 35.0 6.3 93 10-102 299-393 (511)
278 KOG4332|consensus 80.3 13 0.00029 29.7 7.5 95 8-102 281-384 (454)
279 KOG3097|consensus 74.5 11 0.00024 30.9 5.7 77 16-93 65-141 (390)
280 TIGR01667 YCCS_YHJK integral m 74.3 71 0.0015 29.3 14.4 41 37-77 55-96 (701)
281 TIGR00805 oat sodium-independe 71.8 6.5 0.00014 35.3 4.5 46 8-53 365-413 (633)
282 PF01733 Nucleoside_tran: Nucl 71.4 1.6 3.5E-05 35.2 0.5 103 14-118 187-303 (309)
283 PF01528 Herpes_glycop: Herpes 70.9 13 0.00029 30.9 5.6 60 59-118 231-290 (374)
284 COG1422 Predicted membrane pro 70.5 43 0.00093 25.1 10.8 14 107-120 30-43 (201)
285 PF07857 DUF1632: CEO family ( 70.4 51 0.0011 25.9 8.7 18 129-146 118-135 (254)
286 KOG0637|consensus 68.0 6.1 0.00013 33.7 3.2 74 14-87 337-410 (498)
287 TIGR00880 2_A_01_02 Multidrug 64.7 18 0.00039 24.1 4.8 28 15-42 93-120 (141)
288 KOG3312|consensus 57.0 65 0.0014 22.9 6.1 35 141-175 25-59 (186)
289 PF03547 Mem_trans: Membrane t 56.6 27 0.00059 29.0 5.2 17 204-220 238-254 (385)
290 COG1268 BioY Uncharacterized c 56.2 25 0.00055 26.1 4.3 23 16-38 89-111 (184)
291 KOG1237|consensus 55.5 40 0.00087 30.0 6.2 59 61-120 457-515 (571)
292 COG3389 Uncharacterized protei 55.2 13 0.00027 28.5 2.6 31 14-44 33-63 (277)
293 PF02632 BioY: BioY family; I 54.7 32 0.0007 24.5 4.6 23 17-39 61-83 (148)
294 KOG3810|consensus 54.6 47 0.001 27.7 5.9 91 12-102 274-366 (433)
295 PF04281 Tom22: Mitochondrial 54.5 46 0.001 23.4 5.1 16 87-102 60-75 (137)
296 PF06645 SPC12: Microsomal sig 50.9 38 0.00082 21.0 3.9 30 65-94 41-70 (76)
297 TIGR01666 YCCS hypothetical me 49.6 2.1E+02 0.0046 26.3 14.8 41 37-77 55-96 (704)
298 KOG0055|consensus 49.5 2.5E+02 0.0054 27.7 10.4 35 106-140 789-823 (1228)
299 TIGR00986 3a0801s05tom22 mitoc 48.8 64 0.0014 22.8 5.1 17 86-102 57-73 (145)
300 PF12805 FUSC-like: FUSC-like 47.4 1.4E+02 0.0031 23.7 14.1 34 44-77 4-38 (284)
301 TIGR00926 2A1704 Peptide:H+ sy 45.1 2E+02 0.0043 26.2 9.0 60 62-122 565-624 (654)
302 PRK14229 camphor resistance pr 44.9 93 0.002 20.8 6.1 16 77-92 64-79 (108)
303 PF11947 DUF3464: Protein of u 40.7 60 0.0013 23.3 4.1 79 31-113 56-144 (153)
304 PF11299 DUF3100: Protein of u 39.4 81 0.0018 24.4 4.8 36 66-102 175-210 (241)
305 TIGR03802 Asp_Ala_antiprt aspa 39.0 2.1E+02 0.0045 25.6 8.0 22 11-32 452-473 (562)
306 PRK14230 camphor resistance pr 38.4 1.2E+02 0.0025 20.8 5.1 14 79-92 70-83 (119)
307 PRK10692 hypothetical protein; 37.9 90 0.002 19.9 4.0 20 37-56 2-21 (92)
308 PRK09609 hypothetical protein; 37.5 2.3E+02 0.0049 23.1 11.7 13 141-153 96-108 (312)
309 KOG3626|consensus 36.1 64 0.0014 29.7 4.4 58 65-122 589-646 (735)
310 COG0861 TerC Membrane protein 36.0 2.2E+02 0.0047 22.5 9.4 29 74-102 28-56 (254)
311 PF06912 DUF1275: Protein of u 36.0 1.9E+02 0.004 21.7 12.6 41 15-55 52-95 (209)
312 PRK10697 DNA-binding transcrip 35.4 1.5E+02 0.0032 20.3 5.2 13 139-151 56-68 (118)
313 PHA03242 envelope glycoprotein 35.3 2.1E+02 0.0046 24.5 7.0 39 59-97 245-283 (428)
314 PF09605 Trep_Strep: Hypotheti 34.0 1.6E+02 0.0034 21.9 5.7 29 24-52 43-71 (186)
315 TIGR02230 ATPase_gene1 F0F1-AT 33.0 1.3E+02 0.0028 19.9 4.4 25 24-48 57-82 (100)
316 PHA03237 envelope glycoprotein 30.4 2.2E+02 0.0047 24.4 6.4 38 59-96 248-285 (424)
317 PF10762 DUF2583: Protein of u 30.4 1.1E+02 0.0023 19.5 3.5 18 38-55 3-20 (89)
318 KOG2325|consensus 30.0 19 0.00041 31.2 0.2 64 70-134 396-462 (488)
319 PRK10263 DNA translocase FtsK; 29.5 4.1E+02 0.0088 26.6 8.5 16 107-122 143-158 (1355)
320 PF13829 DUF4191: Domain of un 29.2 2.5E+02 0.0054 21.7 6.0 48 124-171 50-99 (224)
321 PF04120 Iron_permease: Low af 28.4 2.1E+02 0.0046 20.0 9.4 20 130-149 44-63 (132)
322 PF02694 UPF0060: Uncharacteri 27.9 1.2E+02 0.0026 20.3 3.6 47 9-55 54-100 (107)
323 PRK04972 putative transporter; 27.3 4.5E+02 0.0098 23.5 8.2 27 76-102 511-537 (558)
324 PF10785 NADH-u_ox-rdase: NADH 27.2 1.4E+02 0.003 19.1 3.8 40 22-61 31-77 (86)
325 PF03137 OATP: Organic Anion T 25.6 23 0.0005 31.2 0.0 56 67-122 456-511 (539)
326 KOG4255|consensus 25.6 55 0.0012 27.0 2.1 61 41-101 81-151 (439)
327 PF15061 DUF4538: Domain of un 25.0 1.1E+02 0.0023 18.0 2.6 22 123-144 3-24 (58)
328 PF01405 PsbT: Photosystem II 24.0 1.1E+02 0.0023 15.1 2.8 9 143-151 20-28 (29)
329 PF13000 Acatn: Acetyl-coenzym 23.9 2.9E+02 0.0062 24.5 6.0 43 68-111 411-453 (544)
330 TIGR02185 Trep_Strep conserved 23.6 3.1E+02 0.0068 20.4 6.1 25 24-48 45-69 (189)
331 PRK14205 camphor resistance pr 22.9 2.5E+02 0.0055 19.1 5.6 16 78-93 70-85 (118)
332 COG4769 Predicted membrane pro 22.5 65 0.0014 23.4 1.7 16 58-73 116-131 (181)
333 PF04474 DUF554: Protein of un 22.5 2.9E+02 0.0064 21.3 5.4 57 17-74 10-66 (226)
334 KOG3097|consensus 21.8 51 0.0011 27.2 1.2 41 9-49 310-350 (390)
335 PRK03818 putative transporter; 21.6 5.8E+02 0.013 22.8 8.7 32 11-42 437-468 (552)
336 COG2119 Predicted membrane pro 21.3 2.4E+02 0.0051 21.1 4.4 36 18-53 143-178 (190)
337 PRK02237 hypothetical protein; 21.1 2.2E+02 0.0048 19.1 3.9 43 11-53 58-100 (109)
338 PRK14233 camphor resistance pr 20.5 3.1E+02 0.0067 19.1 5.9 16 77-92 78-93 (133)
339 CHL00031 psbT photosystem II p 20.1 1.4E+02 0.0031 15.1 2.4 9 143-151 20-28 (33)
340 KOG2927|consensus 20.1 1.1E+02 0.0023 25.3 2.7 9 90-98 209-217 (372)
No 1
>TIGR00898 2A0119 cation transport protein.
Probab=99.97 E-value=2.2e-28 Score=208.91 Aligned_cols=227 Identities=36% Similarity=0.679 Sum_probs=191.6
Q ss_pred CccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhh
Q psy2966 1 LNWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 80 (237)
||+.|+++.+.++..+++.++..+++++.|+++||+|||++++++.++.+++.+..+++++++.+++.|++.|++.+...
T Consensus 119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 198 (505)
T TIGR00898 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198 (505)
T ss_pred ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchH
Confidence 68899989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccChHHHHhcCCHH
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVD 160 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~~~ 160 (237)
+....++.|++|+++|+++.++ ...+..+|.++++.++....+||+.+++.+++.++..+..+++||+|+|+..+++.+
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~ 277 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTL-IQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIE 277 (505)
T ss_pred HHHHHHhheecChhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHH
Confidence 9999999999999999999998 688889999999999888888999999888887777777788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHHHH
Q psy2966 161 EAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMA 233 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (237)
++.+..++..+.++....++..+...+ + +++++.++.++++++++|.++..++.....|+.....++.
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
T TIGR00898 278 EALKILQRIAKINGKKLPAEVLSLSLE---K--DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG 345 (505)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHhhhhh---h--hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877766544332211111 1 0111122457889999999999888887777776655543
No 2
>KOG0255|consensus
Probab=99.96 E-value=5.6e-28 Score=207.19 Aligned_cols=232 Identities=37% Similarity=0.576 Sum_probs=194.1
Q ss_pred CccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhh
Q psy2966 1 LNWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 80 (237)
||+.|++.....+..+++++|..+|+++.|+++||+|||++++++.++..++.+..++++|++.+++.|++.|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccChHHHHhcCCHH
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVD 160 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~~~ 160 (237)
.....+++|++++++|+.+.++ ....+..|.+..+..+....+||+.++...++.++.++.+++.||+|||+..+++.+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~ 268 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRID 268 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchH
Confidence 9999999999999999999998 677777777777777777779999999999888877777777789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHHHHh
Q psy2966 161 EAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMAY 234 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (237)
++.+.+++..+.|+...+.+...+... ..++......+++..+.++++.|.+++.++...+.|+.....++..
T Consensus 269 ~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl 341 (521)
T KOG0255|consen 269 EAIKILKKIAKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL 341 (521)
T ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999988744333222222111 1111122222334568999999989999999999998776666654
No 3
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.95 E-value=2.7e-26 Score=200.89 Aligned_cols=225 Identities=20% Similarity=0.381 Sum_probs=176.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+++.+++.++.+++++++|+++||+|||+.++++.++.+++.++.+++++++.++++|++.|++.++..+...+++
T Consensus 201 ~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~i 280 (742)
T TIGR01299 201 DSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYF 280 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cchHHHHHHHHHHHHHHHHHhhccccChH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----------------ANWQYLCVITSLPLLVAVITPWIVPESAR 151 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~~w~~~~~~~~~~~~~~~~~~~~~pe~p~ 151 (237)
.|++|++.|++..++ ...++.+|.++++.++..+ .+||+++++.+++.++.++..+++||+|+
T Consensus 281 sE~~p~~~Rg~~~g~-~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr 359 (742)
T TIGR01299 281 AEFLAQEKRGEHLSW-LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR 359 (742)
T ss_pred HHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 999999999999988 6777777777776654321 26999998888888887788888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCh--HHH--HHHHHHHHHHh--h-hhhhc------------c----ccchhccc
Q psy2966 152 WLVSQGRVDEAVVIMKRFEKINNKKVDP--KLY--QQLKETCQRQA--K-QEIDG------------K----RYSVLDLF 208 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~--~-~~~~~------------~----~~~~~~~~ 208 (237)
|+..+++.+++.+.++++++.|.+.... ... ++.+...++.+ + +.... . ..+++++|
T Consensus 360 wL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf 439 (742)
T TIGR01299 360 FFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCF 439 (742)
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHc
Confidence 9999999999999999998766543211 110 11111110000 0 00000 0 01356677
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHh
Q psy2966 209 RTPRLRNITCLLIVICAGVRGAIMAY 234 (237)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (237)
+ +.+++.++....+|++..+.+|.+
T Consensus 440 ~-~~~~~~tl~l~~~wf~~~~~yygl 464 (742)
T TIGR01299 440 N-PEVREITIKLMGVWFTLSFGYYGL 464 (742)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 678888889999999988877754
No 4
>KOG0569|consensus
Probab=99.95 E-value=3.8e-26 Score=189.46 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=172.2
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF---ASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+...+++.+|.++|+++.++++||+|||..+.++.++..++.+.+.+ .+++..++++|++.|+..|......+.|
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3466789999999999999999999999999999998888888777766 4788999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHhhccccChHHHHh-cCCHH
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY-----VANWQYLCVITSLPLLVAVITPWIVPESARWLVS-QGRVD 160 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~-~~~~~ 160 (237)
+.|..|.+.||....+ .+++..+|.+++..++.- -..|++.+.+..++.++..+.+.++||||||+.. +++.+
T Consensus 141 l~E~sP~~~RG~~g~~-~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~ 219 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTL-LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEE 219 (485)
T ss_pred HhhcChhhhccHHHHH-HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHH
Confidence 9999999999998888 788888888888555432 2369999999999999999999999999999988 89999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHH
Q psy2966 161 EAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRG 229 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (237)
|+++.+++++..+.++... ++..+ +.++++.+++++.+++|+++++++|+...+...+.+++..
T Consensus 220 ~A~~sl~~y~G~~~~~~~~---e~~~~--e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~ 283 (485)
T KOG0569|consen 220 EARKALKFYRGKEDVEAEI---EEMLR--EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQF 283 (485)
T ss_pred HHHHHHHHHhCCCcchhHH---HHHHH--HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHh
Confidence 9999999987543322211 11111 1112222234567899999999999998877777666554
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.92 E-value=4.6e-24 Score=182.25 Aligned_cols=162 Identities=20% Similarity=0.349 Sum_probs=136.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHhhccchhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST------FWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~ 81 (237)
..+.+++.+...++..+++++.|+++||+|||+.+.++.++..++.++.+++.+ ++.++++|++.|++.|...+
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 346688999999999999999999999999999999999999999988888655 67899999999999999999
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------cchHHHHHHHHHH
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV--------------------------ANWQYLCVITSLP 135 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~w~~~~~~~~~~ 135 (237)
..+.+++|++|+++|+++.++ ......+|..+++.+...+ .+||+++.+.+++
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAA-VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 999999999999999999998 6677777777666554321 2699999888888
Q ss_pred HHHHHHHhhccccChHHHHhcCCHH-HHHHHHHHHH
Q psy2966 136 LLVAVITPWIVPESARWLVSQGRVD-EAVVIMKRFE 170 (237)
Q Consensus 136 ~~~~~~~~~~~pe~p~~~~~~~~~~-~~~~~~~~~~ 170 (237)
.++..+..+++||+|+|+..+++.+ ++.+.+++..
T Consensus 214 ~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 214 ALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence 8877777888999999998877764 4555555544
No 6
>KOG0254|consensus
Probab=99.92 E-value=1e-23 Score=180.46 Aligned_cols=217 Identities=22% Similarity=0.353 Sum_probs=170.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLE 89 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 89 (237)
+.+++.+...++..++++++|.++|++|||+.++.+.+...++.+++++++|.+.++++|++.|++.|....+.+.|++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhccccChHHHHhcCCHHHHHHH
Q psy2966 90 YVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVI 165 (237)
Q Consensus 90 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~~~~~~~~ 165 (237)
..|++.||...+. .+....+|..++..++.... +||..+.+..+++++..+..+++||+|+|+..+++.+++++.
T Consensus 170 iap~~~RG~l~~~-~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 170 IAPAHIRGTLVSL-YQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred cCChhhhHHHHHH-HHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence 9999999999998 78888888888877777664 699998888888888777788999999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHH
Q psy2966 166 MKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAI 231 (237)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
++++...++.+ .+.+.++.+ .+...+......+..+.++++ |..++..+........++...
T Consensus 249 l~~l~g~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG 310 (513)
T KOG0254|consen 249 LKRLRGLSPED-VEVELELLK--IKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTG 310 (513)
T ss_pred HHHHhCCCCcc-hHHHHHHHH--HHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhC
Confidence 99988644222 122222222 111111111122224666776 556665555544444444343
No 7
>KOG0253|consensus
Probab=99.91 E-value=7.8e-23 Score=161.01 Aligned_cols=225 Identities=23% Similarity=0.343 Sum_probs=184.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+..++....+.|..+++..+|.++|++|||+.+....+...+..++.+.++|+..+.+.|.+.|++.|+ .|...++-
T Consensus 112 ~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y 190 (528)
T KOG0253|consen 112 EGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIY 190 (528)
T ss_pred hhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccChHHHHhcCCHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVV 164 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~~~~~~~ 164 (237)
.|..|...|..-+-+ . ..+.+|.++...+..... ||||.......+..+.....+++||+||++..+++.+++..
T Consensus 191 le~lp~~~r~~~~V~-~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAle 268 (528)
T KOG0253|consen 191 LEFLPSSHRWLLTVM-S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALE 268 (528)
T ss_pred HHhccCcCCCcchhH-H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHH
Confidence 999999999876655 3 677777777766666553 89998888888888888888899999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHH-----HHHHHH---HHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2966 165 IMKRFEKINNKKVDPKLYQ-----QLKETC---QRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMAYIC 236 (237)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 236 (237)
.++++++.|+.+.+....+ +.++++ .+.+.+..++.+....+++. |++|+.++....+||.+-+.+|..++
T Consensus 269 tL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VL 347 (528)
T KOG0253|consen 269 TLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVL 347 (528)
T ss_pred HHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998765432111 111111 11122222334456777884 99999999999999999999887764
No 8
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.89 E-value=4.6e-27 Score=198.09 Aligned_cols=162 Identities=34% Similarity=0.730 Sum_probs=144.7
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS---TFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
.+.++..+...+|..+|+++.|.++||+|||+.++.+.++..++.++.++++ +++.+.++|++.|++.|+..+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4578899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---c---chHHHHHHHHHHHHHHHHHhhccccChHHHHhcCCH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---A---NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRV 159 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~~ 159 (237)
|+.|..|+++|++..++ .+.+..+|.+++..++... . .||..+.+..++.+...+..+++||||+|+..+++.
T Consensus 126 ~~~E~~~~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~ 204 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSL-FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRD 204 (451)
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccc
Confidence 99999999999998888 7777777777776665443 2 499999988888877777778899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2966 160 DEAVVIMKRFEK 171 (237)
Q Consensus 160 ~~~~~~~~~~~~ 171 (237)
+|+++.+++.++
T Consensus 205 ~~A~~~l~~~~~ 216 (451)
T PF00083_consen 205 EEAEKVLRKLRG 216 (451)
T ss_pred cccccccccccc
Confidence 999999888543
No 9
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.88 E-value=8.6e-21 Score=160.26 Aligned_cols=159 Identities=22% Similarity=0.402 Sum_probs=135.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA---STFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
..+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++..+. .+++.+++.|++.|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 5788999999999999999999999999999999999999999988888553 3456899999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH---Hhc---cchHHHHHHHHHHHHHHHHHhhccccChHHHHhcCC
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA---YYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR 158 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~---~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~ 158 (237)
.++.|++|+++|+++.++ ...+..+|..+++.++ ... .+||+.|++.++..+...+..+++||+|++...+++
T Consensus 150 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 228 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSL-YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR 228 (481)
T ss_pred HHHHccCChhhhhhhhhH-HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC
Confidence 999999999999999999 7888899999999988 432 389999998777666666777788999988777666
Q ss_pred HHHHHHHHH
Q psy2966 159 VDEAVVIMK 167 (237)
Q Consensus 159 ~~~~~~~~~ 167 (237)
.++.++..+
T Consensus 229 ~~~~~~~~~ 237 (481)
T TIGR00879 229 VEEARKSLA 237 (481)
T ss_pred hHHHHHHHH
Confidence 655544443
No 10
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.87 E-value=2.8e-21 Score=164.09 Aligned_cols=161 Identities=20% Similarity=0.443 Sum_probs=135.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh------------ccHHHHHHHHHHHhhc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA------------STFWQFAICRFFVGLA 75 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~l~g~~ 75 (237)
+.+.++..+.+.++..++++++|+++||+|||++++.+.++..++.+..++. +..+.+++.|++.|++
T Consensus 54 ~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~ 133 (479)
T PRK10077 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh
Confidence 5678999999999999999999999999999999999999988888777652 2246678999999999
Q ss_pred cchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHHHHHHhh
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~ 144 (237)
.|...+...++++|++|+++|+++.++ .+.+..+|.++++.++... .+||+.|++.+++.++..+..+
T Consensus 134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 134 VGLASMLSPMYIAEIAPAHIRGKLVSF-NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred HhHHhhHHHHHHHhhCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 7888888888877665432 2799999987777666666677
Q ss_pred ccccChHHHHhcCCHHHHHHHHHHH
Q psy2966 145 IVPESARWLVSQGRVDEAVVIMKRF 169 (237)
Q Consensus 145 ~~pe~p~~~~~~~~~~~~~~~~~~~ 169 (237)
++||+|+++..+++.+++++..++.
T Consensus 213 ~l~~s~~~l~~~~~~~~~~~~~~~~ 237 (479)
T PRK10077 213 FVPETPRYLMSRGKQEQAEGILRKI 237 (479)
T ss_pred cCCCCcHHHHHcCCHHHHHHHHHHH
Confidence 8999999988777777766555443
No 11
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.86 E-value=3.2e-20 Score=154.86 Aligned_cols=148 Identities=18% Similarity=0.288 Sum_probs=129.1
Q ss_pred ccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
|++.+ ..+.++..+++.+++.+++++.|+++||+|||+++..+.++.+++.+..+++++++.+++.|++.|++.+...+
T Consensus 37 ~~~~s-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 115 (412)
T TIGR02332 37 DLGLS-ATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLP 115 (412)
T ss_pred hcCCC-HHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHH
Confidence 34445 67889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHH-HHHhhccccChH
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---------ANWQYLCVITSLPLLVA-VITPWIVPESAR 151 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~w~~~~~~~~~~~~~~-~~~~~~~pe~p~ 151 (237)
....++.|++|+++|+++.++ +..+..+|..+++.++..+ .+||+.|++.+++.++. .+.++++||+|+
T Consensus 116 ~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 116 GILLYLTFWFPAYFRARANAL-FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999999999 7778888888888776543 38999999877765543 455567899875
No 12
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.3e-20 Score=152.42 Aligned_cols=189 Identities=17% Similarity=0.217 Sum_probs=153.4
Q ss_pred ccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
|++.+ ..+.|+..+.+.++..+++++...+.||+.||++++....++.++++++++++|++.+++.|++.|+..|..++
T Consensus 42 dl~vs-~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~ 120 (394)
T COG2814 42 DLGVS-EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWS 120 (394)
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 45555 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHH-HhhccccChHHHHhcC
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI-TPWIVPESARWLVSQG 157 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pe~p~~~~~~~ 157 (237)
...++..++.|+++|+++.++ ...+..++.+++..++.+++ |||..|+..+.+.++..+ .+..+| |+.
T Consensus 121 i~~~~a~~lvpp~~~~~Aiai-v~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~----- 192 (394)
T COG2814 121 IAAALAARLVPPGKRGRALAL-VFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE----- 192 (394)
T ss_pred HHHHHHHHHcCccchhhHHHH-HHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----
Confidence 999999999999999999999 77888888888887777765 899999998888766554 455677 210
Q ss_pred CHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy2966 158 RVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMAYI 235 (237)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 235 (237)
..++.+.+..+..+++|+|..+...... ..++...+..|+||
T Consensus 193 -----------------------------------~~~~~~~~~~~~~~~l~~p~v~~~l~~t-~l~~~g~F~~ftYi 234 (394)
T COG2814 193 -----------------------------------ISGSLPGPLRTLLRLLRRPGVLLGLLAT-FLFMTGHFALYTYI 234 (394)
T ss_pred -----------------------------------CCCCCCcchhHHHHHhcCchHHHHHHHH-HHHHcchhhhHHhH
Confidence 0001111122345688888887655544 56666667777776
No 13
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.86 E-value=4.9e-20 Score=157.03 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=115.8
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHH--------HHHHHHHHhhccchhhhHHhhh
Q psy2966 15 QAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQ--------FAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 15 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
.++.+++..+|+++.|+++||+|||+++.++.+++++++++++++++++. ++++|++.|++.|+.++....+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 46777899999999999999999999999999999999999999999864 7889999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH----Hh-------ccchHHHHHHHHHHHHHHHHHhhccccChHHH
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA----YY-------VANWQYLCVITSLPLLVAVITPWIVPESARWL 153 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~----~~-------~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~ 153 (237)
++|++|+++|++..++ ...+..+|..+++.+. .. ..+||+.|++.+++.++..+....+||+|++.
T Consensus 143 ~~e~~p~~~Rg~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~ 219 (490)
T PRK10642 143 VAEYSPDRKRGFMGSW-LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ 219 (490)
T ss_pred HHHhCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence 9999999999999888 6666666666655333 21 13899999987766665555566789998864
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.84 E-value=2.5e-19 Score=150.42 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=110.1
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHHhhccchhhhHHhh
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFW--------QFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
..+..+++..+|++++|+++||+|||+++..+.++++++++.+++.+++. .++++|++.|++.|..++...+
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 147 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 34555566669999999999999999999999999999999999887753 5888999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccchHHHHHHHHHHHHHHHHHhhccccChH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY-----------VANWQYLCVITSLPLLVAVITPWIVPESAR 151 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~ 151 (237)
++.|++|+++|++..++ ...+...|.++++.+... ..+||+.|++.+++.++.......+||+|+
T Consensus 148 ~i~e~~p~~~rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~ 223 (432)
T PRK10406 148 YMSEVAVEGRKGFYASF-QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ 223 (432)
T ss_pred HHHHhCCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 99999999999998887 566666666665543321 248999999877776665555555677653
No 15
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.84 E-value=8e-20 Score=150.10 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=114.7
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ +.+.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|++.|++.+. ...
T Consensus 21 ~~~s-~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~ 98 (368)
T TIGR00903 21 IDVS-KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLN 98 (368)
T ss_pred hCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHH
Confidence 4444 67889999999999999999999999999999977655544444333223337899999999999999885 555
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHH-HHHHhhccccChH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESAR 151 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~-~~~~~~~~pe~p~ 151 (237)
....++|++|+++|++++++ ...+..+|..+++.++..+ .+||+.|+..+++.++ .++..+++||+|+
T Consensus 99 ~~~~~~~~~~~~~r~~a~~~-~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 99 AFAPAASQIREERRDLVISL-LSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 66667999999999999999 7778888888888777766 3899999886666544 4455667899875
No 16
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.1e-20 Score=150.15 Aligned_cols=204 Identities=10% Similarity=0.092 Sum_probs=156.5
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
|+.|.+++.+.+.+.+.++..+.|.++||.+.|..+-.++++.++.++++++.++.+.+.++.++.|.++|...|+....
T Consensus 62 sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~ 141 (448)
T COG2271 62 SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART 141 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH--Hhcc---chHHHHHHHHHHHHH-HHHHhhccccChHHHHhcCCHH
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA--YYVA---NWQYLCVITSLPLLV-AVITPWIVPESARWLVSQGRVD 160 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~--~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe~p~~~~~~~~~~ 160 (237)
++.|+|+++||+..++ ++++.++|+.+.|.+. +... +||..|++.++++++ +++.++..+++|+..
T Consensus 142 i~~Wfsr~eRG~~~si-Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~------- 213 (448)
T COG2271 142 ITHWFSRKERGTWWSI-WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE------- 213 (448)
T ss_pred HHHHcCccccCceEEE-ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-------
Confidence 9999999999999999 8999999998888877 4443 899999998877544 556666778887410
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHH
Q psy2966 161 EAVVIMKRFEKINNKKVDPKLYQQLKET-CQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAI 231 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
.-+..++..++..|. +++++.+.-...+.-++-+++||.+|...+...++++..++..
T Consensus 214 -------------GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~ 272 (448)
T COG2271 214 -------------GLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGIN 272 (448)
T ss_pred -------------CCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 000000000000000 0000000000111224457899999999999999988876653
No 17
>KOG2532|consensus
Probab=99.83 E-value=1.6e-19 Score=151.18 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=149.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA--STFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
..+.+++.+.++.|++++.+++|+++||+|-|+++..+.++.++.+++...+ .+++.+++.|+++|++.|..+|....
T Consensus 72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~ 151 (466)
T KOG2532|consen 72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence 4578999999999999999999999999999999999999999999998875 35567899999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhc-cccChHHHHhcCCHH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWI-VPESARWLVSQGRVD 160 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~-~pe~p~~~~~~~~~~ 160 (237)
+...|.|+++|++..++ ...+..+|.+++-.+++.+ .||+.+|++.++..++..+.+++ ..|+|.
T Consensus 152 i~~~W~P~~Ers~~~ai-l~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~--------- 221 (466)
T KOG2532|consen 152 ILAKWAPPNERSTFIAI-LTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS--------- 221 (466)
T ss_pred eeeeECCHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc---------
Confidence 99999999999999998 5556666666665444443 48999999999998887776664 466664
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHH
Q psy2966 161 EAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223 (237)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (237)
+++...+++.+..++.+.+++.+++ .+-+++++++++.++...+..+..
T Consensus 222 ------------~h~~is~~El~~I~~~k~~~~~~~~--~~vP~~~i~ts~~vwai~~~~f~~ 270 (466)
T KOG2532|consen 222 ------------KHPNISEKELKYIEKGKSEAHVKKK--PPVPYKAILTSPPVWAIWISAFGG 270 (466)
T ss_pred ------------cCCCCCHHHHHHHHhcccccccCCC--CCCCHHHHHcCHHHHHHHHHHHHH
Confidence 2333344444444443332222211 467899999999998766665543
No 18
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.83 E-value=1.1e-19 Score=149.83 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=124.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.+++.+++.++..++.++.|.++||+|||+++..+.++.+++....++.++++.+++.|++.|++.+...+....++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 107 (399)
T TIGR00893 28 AAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV 107 (399)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHH-HhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~-~~~~~pe~p 150 (237)
.|++|+++|++..++ ......+|..+++.+...+ .+|++.++..+++.++..+ ..++.||+|
T Consensus 108 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 108 ASWFPASERATAVSI-FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHhCCHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 999999999999999 7888888888888877754 3799998887776555443 344566664
No 19
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.83 E-value=1.9e-19 Score=150.31 Aligned_cols=142 Identities=24% Similarity=0.349 Sum_probs=122.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++++++.++++|++.|++.+...+....++
T Consensus 50 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 50 VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999998887677778889
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe~p 150 (237)
.|++|+++|+++.++ ......++..++|.++..+. +||+.|++.++..++..+. .+.+||++
T Consensus 130 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 130 QEAFGQTKGIKLMAI-ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999988 67777788888888776553 8999998877776555443 44578874
No 20
>PRK03545 putative arabinose transporter; Provisional
Probab=99.82 E-value=4.9e-19 Score=146.72 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=125.4
Q ss_pred ccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
|++.+ ..+.++..+.+.+++.+++++.|.++||+|||+++..+.++.+++.+.+.++++++.++++|++.|++.+...+
T Consensus 38 ~~~~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~ 116 (390)
T PRK03545 38 SFHMQ-TAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWS 116 (390)
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34554 67889999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHH-HhhccccC
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI-TPWIVPES 149 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pe~ 149 (237)
...+++.|++|+++|+++.++ ...+..+|..++|.++..+. +||+.|+..+++.++..+ ....+||.
T Consensus 117 ~~~~~i~~~~~~~~r~~~~g~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 117 ITASLAIRVAPAGKKAQALSL-LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHhCChhhhhhHHHH-HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999 78888888888888876542 899999887776554433 33345654
No 21
>KOG2533|consensus
Probab=99.82 E-value=2.8e-19 Score=150.29 Aligned_cols=210 Identities=18% Similarity=0.217 Sum_probs=161.2
Q ss_pred ccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
|++-. ..+.+...++++++++++.++++.+.||++..+.+....+++++..++....+|++.+++.|++.|++.+..+|
T Consensus 75 dl~~~-~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 75 DLKLV-GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred ccchh-hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 33333 56889999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHH-HHHHhhccccChH
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---------ANWQYLCVITSLPLLV-AVITPWIVPESAR 151 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~w~~~~~~~~~~~~~-~~~~~~~~pe~p~ 151 (237)
....+++.|+.+++|++.+++ +.....+|++++++++..+ .+||+.|++.+++.+. ++++.+++|+.|.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~-~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGI-WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHH-HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 999999999999999999999 8888888888888888772 3899999998877655 4566778899985
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhh-hhhccccchhccccCchHHHHHHHHHHHHHHHHHH
Q psy2966 152 WLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQ-EIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGA 230 (237)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (237)
.. .-.+.+|..-..++.+ +++.+. .++.+...+++.+++|..+...+..++....+++.
T Consensus 233 ~~-~fl~~~ek~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~ 292 (495)
T KOG2533|consen 233 KA-WFLTDEEKELVVERLR-------------------ESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGF 292 (495)
T ss_pred hc-cccchHHHHHHHHHHH-------------------hccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccH
Confidence 11 0000011000001100 000111 11134567889999999999888888888777755
Q ss_pred HHH
Q psy2966 231 IMA 233 (237)
Q Consensus 231 ~~~ 233 (237)
.+.
T Consensus 293 ~~~ 295 (495)
T KOG2533|consen 293 SYW 295 (495)
T ss_pred HHH
Confidence 443
No 22
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.82 E-value=5.8e-19 Score=149.58 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=121.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF--ASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++..+ ..+++.+++.|++.|++.+...+....
T Consensus 75 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~ 154 (465)
T TIGR00894 75 GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK 154 (465)
T ss_pred HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH
Confidence 567899999999999999999999999999999999999998888877654 356788999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhh-ccccChH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPW-IVPESAR 151 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~-~~pe~p~ 151 (237)
++.|++|+++|+++.++ ...+..+|.++++.+...+ .+|++.|++.+++.++..+.++ +.+|+|+
T Consensus 155 ~~~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 155 IIVKWAPPKERSRLLGM-STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred HHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999 7778888888888777654 2899999988777666555444 4566664
No 23
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.81 E-value=8.6e-19 Score=146.79 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=122.7
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ +.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.++++|++.|++.+..++.
T Consensus 48 ~~~s-~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~ 126 (426)
T PRK12307 48 LGLT-DMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYAC 126 (426)
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
...++.|++|+++|+++.++ ...+..+|.++++.+...+ .+||+.+++.....++........||++
T Consensus 127 ~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 127 ASTYAVESWPKHLKSKASAF-LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESK 196 (426)
T ss_pred HHHHHHHhCCHhHhhHhhhH-HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence 99999999999999999999 7788888888888776543 3899988875544433333223345554
No 24
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.81 E-value=1.6e-18 Score=143.97 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=121.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+...++..+++++.|.++||+|||+.++.+.++.+++.+...+.++++.+++.|++.|++.+...+...+++
T Consensus 54 ~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 54 EGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe~ 149 (237)
.|++|+++|+++.++ ...+..+|..++|.++..+. +||+.|++.+++.++..+. ....||+
T Consensus 134 ~~~~~~~~~~~a~~~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 134 MRLVPPRTVPKALSV-IFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHcCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999998 67777788888887777653 8999988876655443322 2235654
No 25
>PRK09952 shikimate transporter; Provisional
Probab=99.81 E-value=2.2e-18 Score=144.98 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=111.7
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFW--------QFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
+.+++..+++++.|+++||+|||++++.+.+++++++++++++++++ .++++|++.|++.|..++....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999876 5888999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccchHHHHHHHHHHHHHHHHHhhccccChHH
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY-----------VANWQYLCVITSLPLLVAVITPWIVPESARW 152 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~ 152 (237)
|++|+++|++..+. ...+..+|.++++.+... ..+||..|++.+++.++........||+|++
T Consensus 152 e~~p~~~rg~~~~~-~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~ 225 (438)
T PRK09952 152 ESAPKNKKAFYSSG-VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF 225 (438)
T ss_pred HhCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 99999999998887 677777777777544332 1389999988777665554444557888754
No 26
>TIGR00895 2A0115 benzoate transport.
Probab=99.81 E-value=1.7e-18 Score=143.20 Aligned_cols=148 Identities=25% Similarity=0.359 Sum_probs=126.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++++.+++.+++.|++.+...+...+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (398)
T TIGR00895 51 PVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALV 130 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHH
Confidence 56788999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHH-HHHHHHHhhccccChHHHHhc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLP-LLVAVITPWIVPESARWLVSQ 156 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~-~~~~~~~~~~~pe~p~~~~~~ 156 (237)
.|++|+++|+++.++ ...+..+|..+++.+.+.+. +|+..+++.++. .+...+...++||+|++...+
T Consensus 131 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (398)
T TIGR00895 131 SEYAPKRFRGTAVGL-MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK 202 (398)
T ss_pred HHHcCHHhhchhHhh-HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence 999999999999999 77788888888888776552 788888776543 444455566789988765444
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.80 E-value=1.3e-18 Score=144.23 Aligned_cols=145 Identities=19% Similarity=0.313 Sum_probs=126.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...++..+++++.|.++||+|||++++.+.++.+++.+...+.++++.+++.|++.|++.+..++...+++
T Consensus 46 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 125 (405)
T TIGR00891 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYV 125 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHhhccccChHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-----NWQYLCVITSLPLLVAVITPWIVPESARWL 153 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~ 153 (237)
.|++|+++|+++.++ ...+..+|..+++.+...+. +||+.+++.+++.+...+....+||+|++.
T Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00891 126 IESWPKHLRNKASGL-LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWK 195 (405)
T ss_pred HHhCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 999999999999998 77788888888877765542 499998887666666656666778887654
No 28
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.80 E-value=1.2e-19 Score=148.87 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=122.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+++.++..++..+++++.|+++||+|||+.++.+.++.+++.++..+.++++.+++.|++.|++.+...+...+++
T Consensus 29 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 108 (379)
T TIGR00881 29 KTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108 (379)
T ss_pred HhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHH-HHHHhc---cchHHHHHHHHHHHHH-HHHHhhccccChH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLP-WIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESAR 151 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~-~~~~~~---~~w~~~~~~~~~~~~~-~~~~~~~~pe~p~ 151 (237)
.|++|+++|+++.++ ...+..+|..++| .+.... .+|++.+++.+++.++ .++..++.||+|+
T Consensus 109 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 109 TKWFSRSERGTWVSF-WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred HHhcCHhhheeeEee-hhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 999999999999988 6777778888887 344332 3799988877665544 4455556777654
No 29
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.80 E-value=2.2e-18 Score=144.85 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=124.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.++.++++.+++.|++.|++.|...+....++
T Consensus 57 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~ 136 (434)
T PRK11663 57 RSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLL 136 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHH-HHHhhccccChH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESAR 151 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~-~~~~~~~pe~p~ 151 (237)
.|++|+++|+++.++ ...+..+|..++|.+.+.+ .+||+.|++.+++.+.. ++..+++||+|+
T Consensus 137 ~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~ 203 (434)
T PRK11663 137 TAWYSRTERGGWWAI-WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQ 203 (434)
T ss_pred HHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHh
Confidence 999999999999999 7778888888888776654 38999998877665433 344556788764
No 30
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.80 E-value=1.3e-18 Score=142.23 Aligned_cols=136 Identities=14% Similarity=0.131 Sum_probs=118.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS-----TFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+.+.+++.++..++..+++++.|+++||+|||++++.+.++.+++.++..+.+ +.+.+++.|++.|++.+...+.
T Consensus 33 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999998888888877776 8999999999999999999999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 144 (237)
..+++.|++|+++|++..++ ......+|.+++|.++..+. +|++.+++.++..++..+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 113 YQAMLPDLVPEEQLTQANSL-SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHhcCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 78888888888888877653 799988877665555444433
No 31
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.79 E-value=1.7e-18 Score=140.97 Aligned_cols=141 Identities=25% Similarity=0.415 Sum_probs=121.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+.+.++..+++++.|.++||+|||++++.+.++.+++.++..++++.+.+++.|++.|++.+...+....++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i 110 (352)
T PF07690_consen 31 PSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALI 110 (352)
T ss_dssp SHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccc
Confidence 67899999999999999999999999999999999999999999966666668888999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe~ 149 (237)
.|++|+++|+++.++ ......+|..++|.++..+. +|++.+++.++..++..+. ..+++++
T Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 111 ADWFPPEERGRAFGI-LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHCCCTCCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred cccchhhhhhhcccc-ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 999999999999999 78899999999999988875 7898988888777666543 3455554
No 32
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.79 E-value=1.9e-17 Score=141.35 Aligned_cols=147 Identities=16% Similarity=0.071 Sum_probs=125.2
Q ss_pred ccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
|++.+ ..+.+|..+.+.++...+.++.|+++||+|||++++.+.++..++.+++++++|.+.++++|++.|++.+...+
T Consensus 35 ~l~~s-~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~ 113 (495)
T PRK14995 35 TLGAS-GNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVP 113 (495)
T ss_pred HhCCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444 56789999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhhhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHH-HHHhhccccCh
Q psy2966 82 MMYILVLEYV-GPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVA-VITPWIVPESA 150 (237)
Q Consensus 82 ~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pe~p 150 (237)
.....+.+.+ |+++|+++.++ ......+|..++|.+++.+. +||+.|++...+.++. .+..+++||+|
T Consensus 114 ~~~~~l~~~~~~~~~r~~~~g~-~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 114 ATLAGIRATFTEEKQRNMALGV-WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8777777765 67999999999 78888899999999888773 8999998866554443 34445677765
No 33
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.78 E-value=2.3e-17 Score=136.93 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=114.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+.+.+++.+..+++|.++||+|||++++++.++.+++.+.+.+..+. ++.|++.|++.+...|...+++
T Consensus 37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i 113 (393)
T PRK11195 37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGIL 113 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998888777666553 6789999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANW--QYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
.|++|+++|+++.++ .+....++.+++|.+++.+..| +..+.+.+...+...+..+.+||+|
T Consensus 114 ~~~~~~~~~~~a~~~-~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 114 TELLPGEKLVKANGW-MEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999 7788888888998888877544 3344433333344444556678864
No 34
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.78 E-value=1.3e-17 Score=140.87 Aligned_cols=143 Identities=8% Similarity=0.019 Sum_probs=117.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA----STFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
..+.++..+...++..+++++.|+++||+|||++++.+.++.+++.+..++. .+++.+++.|++.|++.+...+..
T Consensus 62 ~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~ 141 (452)
T PRK11273 62 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 141 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHH
Confidence 5688999999999999999999999999999999999999999888887764 367888999999999988888888
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHH-HHHHHHHHh---ccchHHHHHHHHHHHHH-HHHHhhccccChH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAA-SLLPWIAYY---VANWQYLCVITSLPLLV-AVITPWIVPESAR 151 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~---~~~w~~~~~~~~~~~~~-~~~~~~~~pe~p~ 151 (237)
...+.|++|+++|+++.++ ++.+..+|. +.+|++... ..+||+.|++.+++.++ .++..+++||+|+
T Consensus 142 ~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 142 GRTMVHWWSQKERGGIVSV-WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred HHHHHHhCChHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 8889999999999999999 777777765 445543322 24899998887766544 4455667788875
No 35
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.78 E-value=6.7e-18 Score=143.58 Aligned_cols=142 Identities=14% Similarity=0.256 Sum_probs=124.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+.+.++..++.++.|+++||+|||+.++.+.++..++.++++++++++.+++.|++.|++.+...+...+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i 115 (485)
T TIGR00711 36 LSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTL 115 (485)
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
.|++|+++|+++.++ +.....+|..++|.+++.+. +||+.|+..+.+.++.. +..++.||++
T Consensus 116 ~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 116 LNIYPPEKRGRAMAI-WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHCCHHHHHHHHHH-HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 999999999999999 78888888888888877653 79998887666554443 3344567654
No 36
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.77 E-value=2.8e-18 Score=145.45 Aligned_cols=147 Identities=12% Similarity=-0.000 Sum_probs=118.5
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHhhccc
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-----ASTFWQFAICRFFVGLAFD 77 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~~~ 77 (237)
++.+ +.+.+++.+.+.+++.++.++.|.++||+|||+++..+.+++++..+..++ +++++.+++.|++.|++.+
T Consensus 59 ~~~s-~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 137 (467)
T PRK09556 59 YGLS-TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQS 137 (467)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 4444 678899999999999999999999999999999998888888777766654 5889999999999999999
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHH-HHHhhccccCh
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV------ANWQYLCVITSLPLLVA-VITPWIVPESA 150 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~------~~w~~~~~~~~~~~~~~-~~~~~~~pe~p 150 (237)
...+....+++|++|+++|+++.++ ...+..+|..+++.+.... .+|+..|.+.+++.++. ++.+++.+++|
T Consensus 138 ~~~~~~~~~i~~~~~~~~rg~a~gi-~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p 216 (467)
T PRK09556 138 TGGPCSYSTITRWTPRRKRGRFLGF-WNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSP 216 (467)
T ss_pred ccchHHHHHHHHHcCccceeeeEEe-eecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 8899999999999999999999998 6777777777776665322 25888777766655443 34444567766
Q ss_pred H
Q psy2966 151 R 151 (237)
Q Consensus 151 ~ 151 (237)
+
T Consensus 217 ~ 217 (467)
T PRK09556 217 E 217 (467)
T ss_pred h
Confidence 4
No 37
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.77 E-value=9e-18 Score=137.74 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=116.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+++.++..+++++.|.++||+|||+++..+.++.+++.+.++++++++.+++.|++.|++.+..++.....+
T Consensus 37 ~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 116 (377)
T TIGR00890 37 VTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTA 116 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHH-HHHHhc--cchHHHHHHHHHHHHHHHHH-hhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLP-WIAYYV--ANWQYLCVITSLPLLVAVIT-PWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~w~~~~~~~~~~~~~~~~~-~~~~pe~ 149 (237)
.|++| ++|+++.++ ...+..+|..+++ ...... .+||+.|++.+++.+...+. .++++++
T Consensus 117 ~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 117 VKWFP-DKRGLASGI-IIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred HHHcC-cccHHHHHH-HHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99987 569999998 6777777776544 333333 37999998877766555433 4445554
No 38
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.77 E-value=1.7e-17 Score=136.90 Aligned_cols=142 Identities=17% Similarity=0.318 Sum_probs=122.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+...+.++++.+.+.|++.|++.+...+...+++
T Consensus 39 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 118 (385)
T TIGR00710 39 ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALV 118 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
.|++|+++|++..++ ......+|..+++.++..+ .+|+..+++.++..++.. ...+..||++
T Consensus 119 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 119 RDIYPGEELSRIYSI-LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999 6777788888887777654 279988887666654443 3344567663
No 39
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.76 E-value=2.9e-17 Score=136.32 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=108.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+++++++.+++.|++.|++.+...+....++
T Consensus 43 ~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~ 122 (393)
T PRK09705 43 FSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVI 122 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY----VANWQYLCVITSLPLLV 138 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~~w~~~~~~~~~~~~~ 138 (237)
.+++| ++|+++.+. +..+...|..+++.+... ..+||..+...++..++
T Consensus 123 ~~~~~-~~~~~~~g~-~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 123 KRRFQ-QRTPLVMGL-WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHHcc-ccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99997 779999988 665555555555544433 34799876655444433
No 40
>KOG1330|consensus
Probab=99.76 E-value=2.9e-20 Score=150.71 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=127.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+...|++++.+.+.+++.+|++|+++||++||.++.+|..++.++.+..+++..+|++.++|.+.|+|.+...++.+.++
T Consensus 67 ~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~I 146 (493)
T KOG1330|consen 67 DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLI 146 (493)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
+|.+|..+|++.+++ ++++..+|..+|.+++.... .||+.|...+++.++.. +..++.+|++
T Consensus 147 aD~f~~~~Rs~~~~i-fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 147 ADSFPDDKRSRVLGI-FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hhcCcchhhhHHHHH-hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 999999999999999 88888888888877666553 59999998888765554 4455667764
No 41
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.76 E-value=2e-17 Score=137.77 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=126.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+...++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+++.|++.|++.+...+...+++
T Consensus 49 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 128 (406)
T PRK11551 49 VAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALT 128 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999988888999999999999999999998999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHH-HHHhhccccChHHHHh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVA-VITPWIVPESARWLVS 155 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pe~p~~~~~ 155 (237)
.|++|+++|+++.++ ...+..+|..+++.++.... +|+..+++.+++.+.. .+...++||+|++...
T Consensus 129 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (406)
T PRK11551 129 SEAVGPRLRGTAVSL-MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQA 199 (406)
T ss_pred HHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence 999999999999999 77788888888888775542 6998888766554443 3445567998875433
No 42
>KOG2615|consensus
Probab=99.76 E-value=1.2e-17 Score=132.36 Aligned_cols=141 Identities=18% Similarity=0.362 Sum_probs=114.8
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
+....|.+.+.+.++..+.++.+|.++||+|||++++.+++..++...+.+.++|+..+++.|++.|++.| ...+.-++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999666777999999877 67888999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHHHH--HHHHHHHHH-HHHHhhccccC
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVAN-------WQYLC--VITSLPLLV-AVITPWIVPES 149 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------w~~~~--~~~~~~~~~-~~~~~~~~pe~ 149 (237)
++|++++|+|+.+++. .+..+.+|.++||.+++++.- +...+ ++..+.... .....+++|||
T Consensus 145 isdV~sek~r~l~ms~-v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSL-VGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred HHhhcChhhccceeee-eehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999998 788888888888888887642 11111 222222222 34556678998
No 43
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.76 E-value=3.9e-17 Score=135.42 Aligned_cols=146 Identities=18% Similarity=0.306 Sum_probs=122.5
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ +.+.++..+.+.++..++.++.|+++||+|||+.++.+.++..++.....+.++.+.+++.|++.|++.+...+.
T Consensus 33 ~~~s-~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 111 (392)
T PRK10473 33 LNAS-EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVV 111 (392)
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHH
Confidence 3444 567889999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHH-HHHhhccccCh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESA 150 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~-~~~~~~~pe~p 150 (237)
...++.|.+|+++|++..++ ......++..++|.++..+ .+|++.+++.++..++. .+..+++||++
T Consensus 112 ~~~~i~~~~~~~~r~~~~~~-~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 112 AFAILRDTLDDRRRAKVLSL-LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999998 6667777788888777654 37998888776654443 33445567763
No 44
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.75 E-value=3.2e-17 Score=135.11 Aligned_cols=142 Identities=25% Similarity=0.407 Sum_probs=122.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+++.++..++.++.|+++||+|||+.+..+.++.+++.....+.++++.+++.|++.|++.+...+...+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 104 (377)
T PRK11102 25 AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALM 104 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
.|++|+++|+++.++ ......+|..++|.++..+ .+|++.++..+.+.++.. ...+++||++
T Consensus 105 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 105 RDMFPKEEFSRMMSF-VTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999 6777788888888777654 279998887766655443 4445667763
No 45
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.75 E-value=7.3e-17 Score=133.45 Aligned_cols=141 Identities=15% Similarity=0.214 Sum_probs=121.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+....++
T Consensus 37 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 116 (382)
T PRK10091 37 IPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVL 116 (382)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH-HHhhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAV-ITPWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe~ 149 (237)
.|++|+++|+++.++ ...+..+|..++|.++..+. +||+.|.+.++..++.. ...+.+||.
T Consensus 117 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 117 SKIIKPGKVTAAVAG-MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHhCChHHhhHHHHH-HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999988 67778888888877766542 79999988776654443 334456775
No 46
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.75 E-value=4.3e-17 Score=133.75 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=111.9
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhccchhhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS-TFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~ 81 (237)
++.+ ..+.++..+...+++.+++++.|+++||+|||+.++.+.++..++.+..++.+ +++.+++.|++.|++.+ ..+
T Consensus 32 ~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 109 (366)
T TIGR00886 32 LGLS-TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFA 109 (366)
T ss_pred hCCC-HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhH
Confidence 4444 66889999999999999999999999999999999999999999999999998 99999999999999855 456
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHH----HHHHHHHHHHHHHHHhc---------cchHHHHH-HHHHH-HHHHHHHhhcc
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIA----IFFTLAASLLPWIAYYV---------ANWQYLCV-ITSLP-LLVAVITPWIV 146 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~----~~~~~g~~~~~~~~~~~---------~~w~~~~~-~~~~~-~~~~~~~~~~~ 146 (237)
....++.|++|+++|+++.++ .. .+..++..+++.+.... .+||+.++ ..++. .+...+...+.
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 188 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGL-AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG 188 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999988 55 34444444544444321 26998873 33333 33334444556
Q ss_pred ccCh
Q psy2966 147 PESA 150 (237)
Q Consensus 147 pe~p 150 (237)
+|+|
T Consensus 189 ~~~~ 192 (366)
T TIGR00886 189 ADTP 192 (366)
T ss_pred ccCC
Confidence 6665
No 47
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.75 E-value=3.4e-17 Score=137.80 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=118.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA----STFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
+.+.++..+++.++..+++++.|+++||+|||+.+..+.++.+++.+..... ++.+.+.+.|++.|++.+..++..
T Consensus 60 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~ 139 (438)
T TIGR00712 60 KGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPC 139 (438)
T ss_pred HhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHH
Confidence 6788999999999999999999999999999999999998988888876653 466778888999999998888888
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHH-HHHHhhccccChH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY----VANWQYLCVITSLPLLV-AVITPWIVPESAR 151 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~~w~~~~~~~~~~~~~-~~~~~~~~pe~p~ 151 (237)
..++.|++|+++|+++.++ .+.+..+|..+++.+... ..+||..|++.+++.++ .++..+++||+|+
T Consensus 140 ~~~i~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 140 GRTMVHWWSQSERGTIVSI-WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQ 211 (438)
T ss_pred HHHHHHhcCcccchhHHHH-HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 8999999999999999999 777777887777655432 23799999887776555 3455566788765
No 48
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.75 E-value=7.1e-17 Score=134.50 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=119.9
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ ..+.++..+.+.+++.++.++.|.++||+|||++++.+..+.+++.+...+.++++.+++.|++.|++.+...+.
T Consensus 43 ~~~s-~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 121 (406)
T PRK15402 43 FNAG-AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAV 121 (406)
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHH
Confidence 3444 567888899999999999999999999999999999999999999998889999999999999999998888888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHH-HhhccccCh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPESA 150 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~-~~~~~pe~p 150 (237)
...++.|.+|+++|.+..++ ......++..++|.++..+ .+|++.+++.+++.++..+ ..+..||++
T Consensus 122 ~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 122 GYAAIQESFEEADAIKITAL-MANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHhChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 89999999999999998887 4555566777777776554 3799988877766555443 334567763
No 49
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.74 E-value=4.6e-17 Score=138.33 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=111.5
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ ..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++.+.+++.|++.|++.+.. ..
T Consensus 66 ~gls-~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~ 143 (476)
T PLN00028 66 LNLT-KSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VS 143 (476)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HH
Confidence 4454 567888889999999999999999999999999999999999999998999999999999999999987754 44
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHH----HHHHHHHHHHHHHHhc--------cchHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAI----FFTLAASLLPWIAYYV--------ANWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~----~~~~g~~~~~~~~~~~--------~~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
...+++|++|+++|++++++ ... +..++..+.|.+.... .+||+.|++.+++.++..+..+++++
T Consensus 144 ~~~~i~~~~~~~~rg~a~g~-~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 144 CQYWMSTMFNGKIVGTANGI-AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHhcChhheeHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56688999999999999998 443 3344444444443221 37999999888776655544444443
No 50
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.74 E-value=9.4e-17 Score=132.56 Aligned_cols=148 Identities=11% Similarity=0.124 Sum_probs=126.2
Q ss_pred cccCCCch-hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 3 WVCAQDTL-PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 3 l~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
++-+ +.+ .+.+.++++.+++++.+++|+++||+|.|+++..+.+.+++..++.+++++...+.+.|++.|++.|...
T Consensus 56 lglT-~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 56 LNFT-EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred cCCC-HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4445 456 8999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHH---HHHHHHHHHHHhhccccChHHH
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVI---TSLPLLVAVITPWIVPESARWL 153 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~---~~~~~~~~~~~~~~~pe~p~~~ 153 (237)
....++..++|+++|++++++ ...+..+|.+++++++..+. +|+....+ ......++++..+++|..++.+
T Consensus 134 A~~syI~~WfP~kER~ratsi-~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl 209 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAY-SRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSL 209 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence 999999999999999999999 78888888888877776643 78765443 3344556667778888665543
No 51
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.74 E-value=1.2e-16 Score=132.56 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=122.4
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ +.+.++..+.+.++..+++++.|.++||+|||+.+..+.++..++.+...+.++++.+++.|++.|++.+...+.
T Consensus 38 ~~~s-~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 116 (394)
T PRK11652 38 LNVR-EGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVM 116 (394)
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHH
Confidence 4444 578899999999999999999999999999999999999999999999889999999999999999998877888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHH-HHHHhhccccCh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESA 150 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~-~~~~~~~~pe~p 150 (237)
...+..|.+++++|+++.+. ...+..++..++|.+++.+ .+|++.+++.++..++ ..+..++.||++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 117 ARTLPRDLYEGTQLRHANSL-LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 88889999999999998888 7778888888888777654 3799988887665443 334445677764
No 52
>PRK15075 citrate-proton symporter; Provisional
Probab=99.73 E-value=4.8e-16 Score=130.70 Aligned_cols=113 Identities=18% Similarity=0.243 Sum_probs=92.5
Q ss_pred hhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHHhhccchhhhHHhhhhhhhcCC
Q psy2966 22 AIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFW--------QFAICRFFVGLAFDNCFTMMYILVLEYVGP 93 (237)
Q Consensus 22 ~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~ 93 (237)
..+++++.|+++||+|||+.++.+.++..++.++++++++++ .++++|++.|++.+...+....+++|++|+
T Consensus 69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 357899999999999999999999999999999999998876 368899999999999899889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHH
Q psy2966 94 SWRTFVANMSIAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLP 135 (237)
Q Consensus 94 ~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~ 135 (237)
++|++..++ ...+..+|..+++.++..+ .+||+.|++....
T Consensus 149 ~~rg~~~~~-~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 149 GRKGFYTSW-QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred ccchHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence 999999988 5555545544444433322 3899998875443
No 53
>PRK11043 putative transporter; Provisional
Probab=99.73 E-value=1.9e-16 Score=131.69 Aligned_cols=141 Identities=17% Similarity=0.274 Sum_probs=118.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+++.++..++++++|+++||+|||+.+..+..+..++.+...+.++++.+++.|++.|++.+...+...+++
T Consensus 40 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 119 (401)
T PRK11043 40 ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALV 119 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999999999999998887778888899
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
.|++|++++++..+. ......++..++|.+++.+ .+|++.++..++..++..+..++++|+
T Consensus 120 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 120 IDRYPAQKANRVFAT-IMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999988888777 5555666777777766654 389998888776666555555555554
No 54
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.73 E-value=7.6e-17 Score=137.50 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=118.6
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA---TAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
.+.++..+...++..++.++.|+++||+|||+.+..+.++..+.... ....++...+++++++.|++.+...+....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 365 (490)
T PRK10642 286 DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778889999999999999999999888776644433322 222455677778888888877777777888
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhccccChHHHHhc-----
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQ----- 156 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~----- 156 (237)
++.|.+|++.|+++.+..++.+... +.++|.+.+.+ .+|+..+.+..++.++..+..+++||+|+++.++
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~ 444 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAA 444 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccc
Confidence 8999999999999998756665544 44555554443 3567666666666666666667789999987754
Q ss_pred CCHHHHHHHHHHHH
Q psy2966 157 GRVDEAVVIMKRFE 170 (237)
Q Consensus 157 ~~~~~~~~~~~~~~ 170 (237)
++.+|+++.+++++
T Consensus 445 ~~~~~a~~~l~~~~ 458 (490)
T PRK10642 445 SDIQEAKEILVEHY 458 (490)
T ss_pred cchhhHHHHhhccc
Confidence 88889998888776
No 55
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.73 E-value=3.5e-16 Score=129.06 Aligned_cols=131 Identities=17% Similarity=0.279 Sum_probs=106.8
Q ss_pred HhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHHhhccchhhhHHhhhhhhhc
Q psy2966 20 CGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFW--------QFAICRFFVGLAFDNCFTMMYILVLEYV 91 (237)
Q Consensus 20 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 91 (237)
++..+++++.|+++||+|||+++..+.++..++.++.++.++++ .+++.|++.|++.+...+....++.|++
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~ 125 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA 125 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence 34457899999999999999999999999999999999888764 4788899999999989999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHHHHHHhhccccChH
Q psy2966 92 GPSWRTFVANMSIAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESAR 151 (237)
Q Consensus 92 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~pe~p~ 151 (237)
|+++|++..+. ...+..+|.++++.+.... .+||+.+++.+++.++........||+|+
T Consensus 126 ~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (394)
T TIGR00883 126 PPGKRGFYGSF-QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPV 195 (394)
T ss_pred CcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 99999999988 7777778888777665332 27999888776666555555555677643
No 56
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.72 E-value=1.2e-17 Score=145.75 Aligned_cols=141 Identities=8% Similarity=0.126 Sum_probs=117.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc---------------------------
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS--------------------------- 60 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--------------------------- 60 (237)
..+.|++.+.+.+++.++.++.++++||+|||+.+.++.++++++.++.++.+
T Consensus 67 s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~ 146 (633)
T TIGR00805 67 TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM 146 (633)
T ss_pred CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence 45689999999999999999999999999999999999999999999887642
Q ss_pred ------------------------cHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2966 61 ------------------------TFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLP 116 (237)
Q Consensus 61 ------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~ 116 (237)
.+..++++|++.|++.+..++...+++.|++|+++|++..++ ......+|..+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i-~~~~~~iG~~lG~ 225 (633)
T TIGR00805 147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI-LESIAVFGPAFGY 225 (633)
T ss_pred CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH-HHHHHHhhhHHHH
Confidence 245677899999999999999999999999999999999999 7778888888887
Q ss_pred HHHHhcc-------------------------chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 117 WIAYYVA-------------------------NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 117 ~~~~~~~-------------------------~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
++++.+. .|+..|++.+++.++..+.++++|++
T Consensus 226 llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 226 LLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 7765432 26667777777766655556666665
No 57
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.72 E-value=1.3e-16 Score=136.17 Aligned_cols=145 Identities=23% Similarity=0.374 Sum_probs=124.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.+...+.++++.+++.|++.|++.+..++....++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 133 (496)
T PRK03893 54 TVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYV 133 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccChHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPESARWL 153 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~ 153 (237)
.|.+|+++|+++.++ ...+..+|..++|.+...+. +||+.|.+..+..++..+....+||++++.
T Consensus 134 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~ 201 (496)
T PRK03893 134 IESWPKHLRNKASGF-LISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWK 201 (496)
T ss_pred HHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 999999999999998 77788888888888776553 799988875555554444445678876543
No 58
>PRK10054 putative transporter; Provisional
Probab=99.72 E-value=1.9e-16 Score=131.57 Aligned_cols=141 Identities=12% Similarity=0.076 Sum_probs=117.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...+++.+++++.|.++||+|||++++.+.++.+++.+...+.++++.+++++++.|.+.+...+....+.
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (395)
T PRK10054 42 VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWF 121 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999989888888899998888889888887777788889999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHH-hhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLVAVIT-PWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~-~~~~pe~ 149 (237)
.|..|+++|+++.++ ......+|..++|.++..+. +|+..|...++..++..+. .+++||+
T Consensus 122 ~~~~~~~~~~~~~g~-~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 122 ADNLSSTSKTKIFSL-NYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHhcCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998 66677778888877776653 7888888777665555433 3445554
No 59
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.71 E-value=6.8e-16 Score=128.91 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=97.1
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHhhccc
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-----STFWQFAICRFFVGLAFD 77 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~~~ 77 (237)
++-+ +.|.++..++..+++.++.++.|.+.||+|.|+++.++.++.++..+..+++ ++++.+++.|++.|++ +
T Consensus 65 ~~ls-~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 65 FNFT-TDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 4444 5689999999999999999999999999999999999999999999988876 8999999999999997 7
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHH----HHHHHHHHH
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTL----AASLLPWIA 119 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~----g~~~~~~~~ 119 (237)
..++.....+++++|+++||++.++ .....++ +.++.|.+.
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi-~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGI-NGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 7889999999999999999999999 5333334 444455433
No 60
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.71 E-value=5.4e-16 Score=129.33 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=113.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF---ASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
+.+.++..+.+.+++.+++++.|++.||+|||+.++.+.++.+++..+... .++++.+++.|++.|++.+...+...
T Consensus 37 ~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~ 116 (410)
T TIGR00885 37 AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAAN 116 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhh
Confidence 568899999999999999999999999999999999999999999877543 46889999999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------cchHHHHHHHHHH
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV-----------------------------ANWQYLCVITSLP 135 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------------~~w~~~~~~~~~~ 135 (237)
.++.+..|+++|++..++ .+....+|..++|.+...+ .+||+.|+..+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~-~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~ 195 (410)
T TIGR00885 117 PYILVMGPESTATRRLNL-AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAV 195 (410)
T ss_pred HHHHHHCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 6677777777777665533 1499988877766
Q ss_pred HHHHHHH
Q psy2966 136 LLVAVIT 142 (237)
Q Consensus 136 ~~~~~~~ 142 (237)
.+...+.
T Consensus 196 ~~~~~~~ 202 (410)
T TIGR00885 196 VLAVALL 202 (410)
T ss_pred HHHHHHH
Confidence 5544333
No 61
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.70 E-value=9.1e-16 Score=126.21 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=110.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALV-GTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
+.+.++..+.+.++..+.+++.|.++||+|||+.++ .+.+...++.+..+++++++.+++.|++.|.+.+...+...++
T Consensus 32 ~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~ 111 (375)
T TIGR00899 32 PAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFAL 111 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 678899999999999999999999999999988655 4556666677778888999999999999888777778888888
Q ss_pred hhhhcCCchhHHH--HHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH-HHhhccccChH
Q psy2966 87 VLEYVGPSWRTFV--ANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAV-ITPWIVPESAR 151 (237)
Q Consensus 87 ~~e~~~~~~r~~~--~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe~p~ 151 (237)
..|+.|++.|++. .+. ...+..+|..++|.++..+. +||+.|++.+++.++.. +..+++||+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 112 AREHADRTGREAVMFSSV-MRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHhhhcchhhHHHHHH-HHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9999988877754 344 44556677777777666542 79999988777655544 34455788753
No 62
>PRK10133 L-fucose transporter; Provisional
Probab=99.70 E-value=7.2e-16 Score=129.65 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=99.2
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHhhccchh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVAT---AFASTFWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~ 79 (237)
++.+ +.+.++..+.+.+++.+++++.|++.||+|||+++..+.++++++.+++ .++++++.++++|++.|++.+..
T Consensus 56 ~~~s-~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~ 134 (438)
T PRK10133 56 FTLT-NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134 (438)
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3444 5788999999999999999999999999999999999999999998775 45789999999999999999999
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
.+..+.++.|+.|+++|....++ ....+.+|..+++.++.
T Consensus 135 ~~~~~~~v~~~~~~~~~~~~~s~-~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 135 ETAANPFVTVLGPESSGHFRLNL-AQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HhhHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999998777777666777 56666677777766543
No 63
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.69 E-value=1.1e-15 Score=127.10 Aligned_cols=140 Identities=17% Similarity=0.252 Sum_probs=117.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...++..+.+++.|.++||+|||+++..+.++.+++.+...+.++.+.+++.|++.|++.+...+...+++
T Consensus 45 ~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 124 (400)
T PRK11646 45 AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALV 124 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889998999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHH-HHhhcccc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLVAV-ITPWIVPE 148 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~-~~~~~~pe 148 (237)
.|++|+++|+++.++ ......+|..++|.+++.+. +|++.|++.++..++.. +..+++||
T Consensus 125 ~~~~~~~~~~~a~~~-~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 125 IKLIRPHQRGRFFSL-LMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999 77777777777777766553 78888887766554433 33344554
No 64
>PRK10504 putative transporter; Provisional
Probab=99.69 E-value=4.2e-15 Score=126.17 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=118.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+.+.++..++.++.|+++||+|||++++.+.++.+++.+...+.++.+.+++.|++.|++.+...+....++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 123 (471)
T PRK10504 44 PLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTV 123 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHH-HhhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~-~~~~~pe~ 149 (237)
.|.+|+++|+++.++ ......+|..++|.+++.+ .+|++.|.+......+..+ .....|+.
T Consensus 124 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 124 MKIVPREQYMAAMTF-VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHcCHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999998 6777778888888877654 3799988886655444433 33344554
No 65
>KOG0252|consensus
Probab=99.68 E-value=1e-16 Score=130.01 Aligned_cols=144 Identities=17% Similarity=0.342 Sum_probs=116.3
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHhhccchhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS-------TFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~~ 81 (237)
...+.+..+.++|.++|+++.|+++||+|||+++...++++.++++++++.. -.+.+...|++.|+|.|+-+|
T Consensus 84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP 163 (538)
T KOG0252|consen 84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP 163 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence 3557788899999999999999999999999999999999999998777631 235678889999999999999
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHH----HHHHHHHHHHHHHHHhcc--------------chHHHHHHHHHHHHHHHHHh
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIA----IFFTLAASLLPWIAYYVA--------------NWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~----~~~~~g~~~~~~~~~~~~--------------~w~~~~~~~~~~~~~~~~~~ 143 (237)
...+..+|....+.||...+. .. .+...|.+++-++..... -||..+.+..++.+......
T Consensus 164 lSAtI~SE~an~~~RGa~iaa-vFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R 242 (538)
T KOG0252|consen 164 LSATIMSESANKKTRGAFIAA-VFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR 242 (538)
T ss_pred chHHHhhhhhhhccccceeEE-EEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999986665 22 233333333333333321 39999999999988888888
Q ss_pred hccccChHHH
Q psy2966 144 WIVPESARWL 153 (237)
Q Consensus 144 ~~~pe~p~~~ 153 (237)
+.+|||+++.
T Consensus 243 l~M~Et~~Y~ 252 (538)
T KOG0252|consen 243 LKMPETARYT 252 (538)
T ss_pred hcCCcchhHH
Confidence 8899999886
No 66
>PRK03699 putative transporter; Provisional
Probab=99.68 E-value=2.5e-15 Score=124.77 Aligned_cols=133 Identities=16% Similarity=0.235 Sum_probs=113.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+++.+...+++.++.++.|++.||+|||+++..+.++.+++.+...+.++++.+++.|++.|++.+...+....++
T Consensus 41 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i 120 (394)
T PRK03699 41 VSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVI 141 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~ 141 (237)
.|++|+++|+++.+. ......+|..++|.+...+ .+||+.|...+++.++..+
T Consensus 121 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 121 THVYEGKQRGSRLLF-TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred hhhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999998887 5556666777777665432 3799999887766554443
No 67
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.68 E-value=5.1e-16 Score=131.23 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=114.0
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHH-HHHHHhhccchhhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAI-CRFFVGLAFDNCFT 81 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~ 81 (237)
++.+ ..+.++..+.+.++..++.++.|+++||+|||++++.+.++.+++.+.++++++++.+++ .|++.|++.+...+
T Consensus 49 ~g~s-~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~ 127 (455)
T TIGR00892 49 FQAT-YSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQ 127 (455)
T ss_pred hCcc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhh
Confidence 4444 567889999999999999999999999999999999999999999999989888888765 46899999887667
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhcc
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
....++.++++ ++|+++.++ ...+..+|..++|.+.+.+ .+||+.|++.+++.++..+..+++
T Consensus 128 ~~~~~~~~~~~-~~r~~a~g~-~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 128 PSLTMLGKYFY-RRRPLANGL-AMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHH-hhHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 77788889996 789999999 6777777777777766544 279999998887765554443333
No 68
>PRK12382 putative transporter; Provisional
Probab=99.67 E-value=1.4e-15 Score=126.24 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=107.7
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHH---Hh-----hccHHHHHHHHHHHhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVAT---AF-----ASTFWQFAICRFFVGL 74 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~-----~~~~~~~~~~~~l~g~ 74 (237)
++-+ ..+.++..+++.+++.+++++.|+++||+|||+.++.+.+...++.+.. .. ..+++.+++.|++.|+
T Consensus 46 lg~s-~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 46 LGFG-NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred cCCc-HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 4444 6789999999999999999999999999999999998887766654332 11 2577889999999999
Q ss_pred ccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHH
Q psy2966 75 AFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLL 137 (237)
Q Consensus 75 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~ 137 (237)
+.+...+...+++.|++|+++|+++.++ .+.+...|..++|.++..+ .+|+..+.+..+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~ 189 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSW-NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL 189 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhH-HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 9998888888999999999999999998 7777778888888777654 278876665444433
No 69
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.66 E-value=7.1e-15 Score=122.37 Aligned_cols=137 Identities=21% Similarity=0.203 Sum_probs=113.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
.++..++..++..+++++.|+++||+|||+.+..+.++.+++.++..+.++++.+++.|++.|++.+ ..+....++.|.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 134 (408)
T PRK09874 56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQ 134 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHh
Confidence 4788899999999999999999999999999999999999998888888999999999999998754 567778889999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHH-HhhccccC
Q psy2966 91 VGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPES 149 (237)
Q Consensus 91 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~-~~~~~pe~ 149 (237)
+|+++|+++.++ ...+..+|..++|.+.+.+ .+|++.+++.++..++..+ ..+++||+
T Consensus 135 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 135 VPRNKSGWALGT-LSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred cCHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999998 6777788888888777765 3799888877766554433 34455665
No 70
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.66 E-value=6.5e-15 Score=121.79 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=107.9
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ +.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++....+++++++.+++.|++.|++.+...+.
T Consensus 36 ~~~s-~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 114 (381)
T PRK03633 36 EHLP-TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVV 114 (381)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 678999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
....+.+..++++|+++.+. +..+..+|..++|.+...+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 115 VESALMCSGTSRNRGRLLAA-YMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 88888899999999999998 77888899999998887764
No 71
>KOG3764|consensus
Probab=99.65 E-value=5.3e-16 Score=123.89 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=128.4
Q ss_pred CCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 6 AQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
.++.+.|++.+...+.+.+.+++.|.+.||+|+|..++++++.+...+++.++.++++.+++.|.++|++.+.......+
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 86 LVLEYVGPSW-RTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 86 ~~~e~~~~~~-r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
++++.+|.+. |++++|+ .-.+..+|..++|.+++.+. |.+.+|++.++++++.....+++-|
T Consensus 183 mlAd~f~~d~er~~vmGi-algfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGI-ALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHcccchhhhHHHHH-HHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 9999999986 6999999 56788899999999998874 7889999999888877666665533
No 72
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.65 E-value=7.6e-15 Score=120.18 Aligned_cols=131 Identities=14% Similarity=0.078 Sum_probs=106.3
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ ..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+.. ..++.+.+++.|++.|++.+...+.
T Consensus 30 ~~~s-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~ 107 (355)
T TIGR00896 30 LGMS-FSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVL 107 (355)
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhcc
Confidence 4444 6788999999999999999999999999999999999988888877766 6788889999999999999887878
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----c-chHHHHHHHHHHHH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----A-NWQYLCVITSLPLL 137 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~-~w~~~~~~~~~~~~ 137 (237)
...++.|++| ++|+++.++ ...+..+|..+++.+...+ . +||..|...++..+
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 108 LPSLIKRDFP-QRVGLMTGL-YSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred chHHHHHhCc-chhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 8888899886 579999998 6777777777766655433 1 38887776554433
No 73
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.65 E-value=2.1e-15 Score=125.35 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=111.9
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh---c-----cHHHHHHHHHHHhhccch
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA---S-----TFWQFAICRFFVGLAFDN 78 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~-----~~~~~~~~~~l~g~~~~~ 78 (237)
++.+.+++.+++.+++.+++++.|.++||+|||++++.+.++.+++.+...+. + +++.+++.|++.|++.+.
T Consensus 49 s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 128 (399)
T PRK05122 49 SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESL 128 (399)
T ss_pred cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHh
Confidence 36788999999999999999999999999999999999998887776655442 2 466789999999999998
Q ss_pred hhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
..+....++.|+.|+++|+++.++ ...+..+|..+++.++..+ .+|+..+++..+..++..+.....|+
T Consensus 129 ~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (399)
T PRK05122 129 AGTGSILWGIGRVGALHTGRVISW-NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPA 200 (399)
T ss_pred hcchHHHHHHhhcChhhhccchhh-hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999988 6777777777777776554 27888877655554443333333344
No 74
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.64 E-value=6.9e-15 Score=122.48 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=96.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH---h-hccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA---F-ASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
+.+.++..+.+.++..+++++.|.++||+|||+++..+.++.+++.+... . .++++.+++.|++.|++.+...+..
T Consensus 47 ~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~ 126 (402)
T TIGR00897 47 PQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSF 126 (402)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHH
Confidence 57889999999999999999999999999999999999998888866542 3 3578888899999999888777778
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAA-SLLPWIAYYV 122 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~~ 122 (237)
..++.+.+|+++|+++.++ ...+..+|. .++|.+++.+
T Consensus 127 ~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 127 LVWVVYNTKQDNLSSAVGW-FWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999 677777775 5677776543
No 75
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.64 E-value=4.3e-15 Score=130.83 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=117.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
..+...+..++.+++.+++|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999888888888888888888988888899999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 91 VGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 91 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
+|++.|++++++ ......+|.+++|.+++.+. +...++++.++..++..+...++||+.
T Consensus 677 ~Pt~~Rgta~Gi-~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGF-LNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999 67788899999998876543 334566666666666666667789983
No 76
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.64 E-value=2.5e-15 Score=140.04 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=110.0
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA---FASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
...+++.+++.+++.++++++|+++||+|||++++++.++..+..++.. ..++++.++++|++.|++.+...+...+
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 4568888999999999999999999999999999988776655554433 3578999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc------------chHHHHHHHH-HHHHHHHHHhhccccChH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA------------NWQYLCVITS-LPLLVAVITPWIVPESAR 151 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~w~~~~~~~~-~~~~~~~~~~~~~pe~p~ 151 (237)
++.|++|+++|++++++ ...+..+|.++++.+++.+. +|.+.+.+.. ...++.++..+.+||+|+
T Consensus 127 ~i~~~~~~~~r~~~~~~-~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 127 IIPELVGKENLSRANGL-LEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred hhHHhcCcccchhhhhH-HHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 99999999999999999 77788888888877776553 2233333322 233334444556677753
No 77
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.63 E-value=2.1e-15 Score=126.14 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=117.1
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHhhccchhhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-----ASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++...... .++++.+++.|++.|++.+...+
T Consensus 50 s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 129 (417)
T PRK10489 50 STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVT 129 (417)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999988887777766554432 46788888999999998888888
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
...+++.|+.|+++|+++.++ ......+|..++|.+++.+ .+|++.+++.++..++..+..+.+|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 130 ALLAATPALVGRENLMQAGAI-TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred HHhhhhhhccCHHHHHHHHHH-HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 889999999999999999998 6777888888888877665 2788888877766666666666677764
No 78
>PTZ00207 hypothetical protein; Provisional
Probab=99.61 E-value=1.3e-14 Score=124.45 Aligned_cols=155 Identities=13% Similarity=0.027 Sum_probs=112.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHhhccchhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA------STFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
..+.+++.+.. .....+.++.|++.||+|||+++.++.++++++.++++++ .+++.+.+.|++.|++.+...+
T Consensus 61 ~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~ 139 (591)
T PTZ00207 61 QRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDL 139 (591)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 44566666553 3344567789999999999999999999999999999986 6899999999999999988888
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHH-HHHHHHhc-cchHHHHHHHHHHHHHH-HHHhhcc--ccChHHHHhc
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASL-LPWIAYYV-ANWQYLCVITSLPLLVA-VITPWIV--PESARWLVSQ 156 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~w~~~~~~~~~~~~~~-~~~~~~~--pe~p~~~~~~ 156 (237)
.....+.+++| ++||++.++ ...+.++|+.+ +++..... .+|+..+++.+++.++. ++.+.++ |+.|++...+
T Consensus 140 ~~~~~i~~~Fp-~~RG~a~Gi-~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~ 217 (591)
T PTZ00207 140 GAVVTVLSVFP-SNRGAVVAI-MKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQE 217 (591)
T ss_pred HHHHHHHHhCh-hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccc
Confidence 88899999996 779999999 67777777764 55555444 37877777766654443 3444444 4444443334
Q ss_pred CCHHHHHHH
Q psy2966 157 GRVDEAVVI 165 (237)
Q Consensus 157 ~~~~~~~~~ 165 (237)
++.++.++.
T Consensus 218 ~~~~~~~~~ 226 (591)
T PTZ00207 218 KHLDEEEKA 226 (591)
T ss_pred cCCCHHHHH
Confidence 333333333
No 79
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.61 E-value=6.5e-15 Score=137.25 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=111.6
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHH---HHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVG---TNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
...++..+++.+.+.++++++|.++||+|||+++.. ..+...+..+.....++++.++++|++.|++.+...+...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 356778889999999999999999999999997533 22222222233333488999999999999999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
++.|++|+++|++++++ ...+..+|.+++|.+++.+. +|++.|+...+..+...+..+++|+++
T Consensus 132 ~l~~~~~~~~~~~a~~~-~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 132 ILPDHLNKDELLGANAL-VEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hhHhhcCccccchhhHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999999999999999 78888999999998888763 788887555555555555666677663
No 80
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.61 E-value=9.2e-15 Score=118.64 Aligned_cols=140 Identities=25% Similarity=0.392 Sum_probs=122.2
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
+..+.++..+...++..+++++.|+++||+|||+.+..+.++..++.+...+.++++.+++.|++.|++.+...+...++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 111 (352)
T cd06174 32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL 111 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVP 147 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~p 147 (237)
+.|++|+++|++..++ ......+|..++|.+...+. +|++.+.+.++..++..+...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
T cd06174 112 IAEWFPPKERGRALGL-FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174 (352)
T ss_pred HHHhCCccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 77888888888888877663 588888877766555544444443
No 81
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.60 E-value=9.2e-15 Score=103.13 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=110.0
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCc
Q psy2966 15 QAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPS 94 (237)
Q Consensus 15 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 94 (237)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34556788899999999999999999999999888888888888889999999999999999988999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhcccc
Q psy2966 95 WRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPE 148 (237)
Q Consensus 95 ~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe 148 (237)
+|++..++ ......+|..++|.+..... +|++.+.......+...+. .++.||
T Consensus 84 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGL-MSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHH-HHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999 67777888888887777653 6888777766665554433 334454
No 82
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.57 E-value=4.3e-14 Score=120.81 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=106.4
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
....|+.+...++..+++++.|.++|.||||.+++.+.++..++.++++.++|...++.+..+.|++.|... .....++
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~is 156 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAIS 156 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999877655 4566689
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHH
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAV 140 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~ 140 (237)
|..|.|.|..+..+ ...........++.++... .+|||.|++..+...+.+
T Consensus 157 El~p~k~R~~~~~~-~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 157 ELVPNKWRGLGLAI-ASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HhcccchhhhHhHH-HHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 99999999887766 3444444444556665443 389999988776654443
No 83
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.56 E-value=3.9e-14 Score=120.53 Aligned_cols=138 Identities=11% Similarity=0.003 Sum_probs=108.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc-ccchHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH-FGRIPALVGTNLTGFVAGVATAFASTFW-QFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+.+.+++.+.+.....+..+++|+++|| +|||++++.+.++++++.+.++++.+.. .+++.|.+.|++.|...+...+
T Consensus 49 ~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~ 128 (489)
T PRK10207 49 QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPAS 128 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHH
Confidence 4566778888887778888899999999 9999999999999999999998876544 3557899999999999999999
Q ss_pred hhhhhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcc
Q psy2966 86 LVLEYVGPSW--RTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 86 ~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
++.|.+|+++ |.++.++ +..+.++|..++|.++..+. +|++.|++.++..+..++.+.+.
T Consensus 129 li~~~~p~~~~~~~~~~~~-~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 129 LLSKCYPPKDPRLDGAFTL-FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHhcCCCchhhhcchhH-HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999874 4666777 66777777777776666553 79999888655444444333333
No 84
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.56 E-value=1.1e-13 Score=115.27 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=107.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc-----cchH-HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhccch
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF-----GRIP-ALVGTNLTGFVAGVATAFA---STFWQFAICRFFVGLAFDN 78 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~ 78 (237)
..+.++...+... .+..+++|+++||+ |||+ .++.+.++.+++....++. .+.+.+.+..++.+++.+.
T Consensus 33 ~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 110 (402)
T PRK11902 33 IQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSAS 110 (402)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH
Confidence 5677777655554 58889999999999 8876 7888788887777776665 3567777777778888888
Q ss_pred hhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
..+...+++.|+.|+++|+++.++ ...+..+|.++++.+...+ .+||..|++.++..+...+..++.||++
T Consensus 111 ~~~~~~al~~~~~~~~~r~~~~~~-~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 111 QDIVFDAYSTDVLHPEERGAGAAV-KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHH-HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 889999999999999999999998 6677777777776655443 3799999887776655555555677763
No 85
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.55 E-value=1.3e-13 Score=112.87 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=103.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc-----cchHH-HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhccch
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF-----GRIPA-LVGTNLTGFVAGVATAFA---STFWQFAICRFFVGLAFDN 78 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~ 78 (237)
..+.++..+. .+...+ .+++|+++||+ |||+. ++.+.++.++.....++. .+.+.+....++.+.+.+.
T Consensus 22 ~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~ 99 (356)
T TIGR00901 22 LKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSAT 99 (356)
T ss_pred HHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHH
Confidence 4566776544 444444 88999999998 89886 466777777776666665 4556667777788887887
Q ss_pred hhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--------hHHHHHHHHHHHHHHHHHhh-cc
Q psy2966 79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---N--------WQYLCVITSLPLLVAVITPW-IV 146 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--------w~~~~~~~~~~~~~~~~~~~-~~ 146 (237)
..+...+++.|++|+++|+++.++ ...+..+|.++++.++..+. + ||..|++.++..++..+..+ ..
T Consensus 100 ~~~~~~a~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~ 178 (356)
T TIGR00901 100 QDIALDAWRLEILSDEELGYGSTI-YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLA 178 (356)
T ss_pred HHHHHHHHHHHhCCHhhhchHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999998 77788888888877775442 4 99999888776666554444 34
Q ss_pred ccC
Q psy2966 147 PES 149 (237)
Q Consensus 147 pe~ 149 (237)
||+
T Consensus 179 ~e~ 181 (356)
T TIGR00901 179 KEP 181 (356)
T ss_pred cCC
Confidence 664
No 86
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.55 E-value=5.1e-14 Score=119.63 Aligned_cols=141 Identities=9% Similarity=-0.006 Sum_probs=118.9
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhccccc-ccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADH-FGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
++.+ ..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.+++.++.+++++.+.+.+.+++.|++.|...+
T Consensus 43 lg~s-~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 121 (475)
T TIGR00924 43 LGFS-QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKA 121 (475)
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccC
Confidence 3444 6788999999999999999999999999 8999999999999999999998888888888999999999998899
Q ss_pred HHhhhhhhhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhc
Q psy2966 82 MMYILVLEYVGPSW---RTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWI 145 (237)
Q Consensus 82 ~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 145 (237)
...++++|++|+++ |+++.++ ...+.++|.+++|.+++.+. +|++.|...++..++..+...+
T Consensus 122 ~~~~~~a~~~~~~~~~~r~~~~~~-~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 122 NPSSMVGKLYERGDMPRRDGGFTL-FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred CHHHHHHHhcCCCCcccccceehh-HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998865 7778888 77888899999988877663 7999888876554444444333
No 87
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.7e-13 Score=109.50 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=116.2
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhccchh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS---TFWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~ 79 (237)
++.+ +.|.+++.++..+...+..++.|.+.||+|.|++...+.++..+..+..+++. +++.+++++++.|++ |+.
T Consensus 44 ~~LS-~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-Gas 121 (417)
T COG2223 44 FGLS-EGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GAS 121 (417)
T ss_pred cCCC-HHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cce
Confidence 4444 67899999999999999999999999999999999999999999999988864 445999999999995 447
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHH---HHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHH-HHHHhhccccCh
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIA---IFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLV-AVITPWIVPESA 150 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~---~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~-~~~~~~~~pe~p 150 (237)
+++...++++++|++++|.+.++ .+ .+..+..+++|++..... .|+....+.....++ .+..++.+.+.|
T Consensus 122 Fav~m~~~s~~fP~~~qG~AlGI-~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 122 FAVGMPNASFFFPKEKQGLALGI-AGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred ehcccccccccCChhhhhHHHHH-hccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 88899999999999999999999 55 334445556677776664 388877766665554 455566666664
No 88
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.52 E-value=5.4e-13 Score=113.84 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=101.5
Q ss_pred hhhhhhhcccccc-----cchHH-HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCc
Q psy2966 24 VGGLVFGWVADHF-----GRIPA-LVGTNLTGFVAGVATAFA---STFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPS 94 (237)
Q Consensus 24 ~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 94 (237)
++.+++|+++||+ |||+. ++.+.++.+++...+++. ++++.+.+.+++.+++.+...+...++..|++|++
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 6889999999999 99985 667777777776666664 46788888999999999988999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 95 WRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 95 ~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
+|+++.++ ...+..+|.++++.+...+ .+||..|++.++..++..+..+++||++
T Consensus 140 ~rg~~~~i-~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 140 ERGAGAAI-SVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999998 6777778887777655443 3799999988777666666555678864
No 89
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.52 E-value=2.4e-13 Score=112.46 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=95.8
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccch----HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRI----PALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+..+.++..+++.++..+++++.|++.||+||| +.+.+...+. ........++++.+++.|++.|++.+...+.
T Consensus 37 s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~ 114 (382)
T PRK11128 37 TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPL 114 (382)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccH
Confidence 367899999999999999999999999999994 3222222211 1222334578999999999999988878888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
..++..++. ++|+++.+. ......+|..++|.+++.+. +||..|+..++..+...+..++.||.
T Consensus 115 ~~a~~~~~~--~~~~~a~~~-~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 115 TDALANTWQ--KQIGLDYGK-VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHHHHHH--hhccCCcch-HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 777777763 446666665 45555677777777777652 89988877665544444433444543
No 90
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.50 E-value=4.4e-13 Score=111.42 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=92.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH---hhc-----cHHHHHHHHHHHhhccchh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA---FAS-----TFWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~-----~~~~~~~~~~l~g~~~~~~ 79 (237)
..+.++..+...++..+++++.|+++||+|||+.++.+.+..++...... +.+ ......+.+++.|++.+..
T Consensus 37 ~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (396)
T TIGR00882 37 KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAG 116 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57889999999999999999999999999999999887666655433221 111 2233455678888877777
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhc-cccC
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV--ANWQYLCVITSLPLLVAVITPWI-VPES 149 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~-~pe~ 149 (237)
.+....+..|..++ ++...+. ......+|..++|.+++.+ .+|+..|+..+++.++..+..+. .||+
T Consensus 117 ~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 117 AGAIEAYIEKVSRN--SNFEYGK-ARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred hhhHHHHHHHhhhh--cccccch-hhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77777777665433 2233333 3334456666666665544 27999998877766555444443 3444
No 91
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.48 E-value=7.2e-13 Score=109.68 Aligned_cols=129 Identities=13% Similarity=0.036 Sum_probs=94.3
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHH-HHHHHHHH-HHHhhccHHHHHHHHHHHhhccchhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTN-LTGFVAGV-ATAFASTFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~-~~~~i~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~ 80 (237)
++.+ ..+.+++.+.+.+...+++++.|+++||+|||+...... +...+..+ ....+++++.+++.|.+.|.+.+...
T Consensus 34 ~g~s-~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 34 IGLG-EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 3443 678999999999999999999999999999865332221 11112222 33356889999999999998887778
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHH
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLP 135 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~ 135 (237)
+...++..+. .++|++..+. ......+|.+++|.+++.+. +|+..|......
T Consensus 113 p~~~al~~~~--~~~~~~~~g~-~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGK-VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccH-HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 8888887664 4667877877 56677788888887766653 799888776544
No 92
>KOG2504|consensus
Probab=99.45 E-value=4.2e-13 Score=114.07 Aligned_cols=140 Identities=12% Similarity=0.237 Sum_probs=116.5
Q ss_pred ccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHHHhhccchhhhH
Q psy2966 4 VCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAIC-RFFVGLAFDNCFTM 82 (237)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~l~g~~~~~~~~~ 82 (237)
+++ ..+.+|+.++......+.+++.+.+.||+|.|++.+.+.++..++.++.+++++.|.+++. -++.|+|.+..+..
T Consensus 77 ~~s-~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p 155 (509)
T KOG2504|consen 77 GSS-SSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP 155 (509)
T ss_pred CCC-ccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence 344 4568999999999999999999999999999999999999999999999999999888776 58889999999988
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
....+..+| +|+|+.++++ ...+.++|.++-|.+...+. |||+.++..+.+.+..++....+
T Consensus 156 aiviv~~YF-~kkR~lA~Gi-a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 156 AVVILGTYF-EKKRALATGI-AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred hhhhhhhHh-HHHHHHHHhh-hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 888888777 5669999999 56677888877777766653 89998888777765555544443
No 93
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.44 E-value=4.4e-12 Score=106.80 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=102.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccc----cccchHHHHHH-HHHHHHHHHHHHhhccHH-----------------HH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVAD----HFGRIPALVGT-NLTGFVAGVATAFASTFW-----------------QF 65 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~~~-----------------~~ 65 (237)
....+++..+..+...+.+++.|.++| |+|||+.++.+ .+...++.++++++++.. ..
T Consensus 38 ~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (477)
T TIGR01301 38 HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVF 117 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHH
Confidence 567788888999999999999999999 59999988775 555556666666655432 22
Q ss_pred HHHHHHHhhccchhhhHHhhhhhhhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHhc------------------cch
Q psy2966 66 AICRFFVGLAFDNCFTMMYILVLEYVGPSWR--TFVANMSIAIFFTLAASLLPWIAYYV------------------ANW 125 (237)
Q Consensus 66 ~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~w 125 (237)
+++..+..++.+...++..++++|..|+++| +.+.++ .+...++|.++++.+++.. .+.
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~-~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY-FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL 196 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence 3333444557777888899999999999876 466776 6677778888887776543 145
Q ss_pred HHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 126 QYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
+..|++.++..++.. +..+..+|.|
T Consensus 197 ~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 197 KSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 777887776655544 4455678875
No 94
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.42 E-value=1.6e-11 Score=101.96 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=98.1
Q ss_pred CchhhHHHHHHHH-hhhhhhhhhhcccccccchHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFC-GAIVGGLVFGWVADHFGRIPAL-VGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
..+.++..+...+ +..++.+.+++ .||+|||+.+ +.+.+..++.....+++++++.+++.+.+.+...+...+....
T Consensus 50 ~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 128 (393)
T PRK15011 50 PAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA 128 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5677888665544 66666666666 9999999865 4556666677777778888888766665555545567788888
Q ss_pred hhhhhcCCchhH--HHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 86 LVLEYVGPSWRT--FVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 86 ~~~e~~~~~~r~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
+..|+.+++.|. ...+. ...+..+|.+++|.+++.+. +||..|+..++..++.. ...+++||+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 129 LAREHADKTGREAVMFSSF-LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHhhhccchHHHHHHH-HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 888888776553 33355 56677788888888877663 89999888776654443 4455678764
No 95
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.5e-11 Score=99.00 Aligned_cols=114 Identities=20% Similarity=0.139 Sum_probs=103.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA---FASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
..+++++...++.|+.+.+++.+.+.+|+|+|+-++.++.+++++..+.. ...++..+++..++.|.|.+...+..+
T Consensus 47 ~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaN 126 (422)
T COG0738 47 YFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAAN 126 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccc
Confidence 45789999999999999999999999999999999999999999998875 457888899999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.|++.+.+++.-...+++ .+....+|.+++|+++..+
T Consensus 127 p~v~~lg~~~~a~~rlnl-~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 127 PYVTLLGKPESAAFRLNL-AQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred hHHHHhCCchhHHHHHHH-HHHhhhhHHHHHHHHHHHH
Confidence 999999999888888888 7888899999999888765
No 96
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.39 E-value=7.5e-12 Score=104.08 Aligned_cols=138 Identities=18% Similarity=0.299 Sum_probs=111.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.+...+.++.+..++..++.|++.+..++.......|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45566778888899999999999999999999888888888877777778888888889999999888888888888899
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 91 VGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 91 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
.|+++|+++.++ ++....+|..+++.+.+... +|+..+++.++..++..+...+++++
T Consensus 331 ~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 331 VPPQNRGAALGA-YSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999998 67777777776666655542 68888888777766666555555554
No 97
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.38 E-value=8.2e-12 Score=105.00 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=99.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc----ccchH-HHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHhhcc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH----FGRIP-ALVGTNLTGFVAGVATAFAST------FWQFAICRFFVGLAF 76 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~ 76 (237)
..+.+++.++..+..++..++.|.++|| +|||+ .++.+.+..+++.+.+...++ ...+.+.+++.+.+.
T Consensus 34 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (437)
T TIGR00792 34 AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFY 113 (437)
T ss_pred HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999998 67744 677777788877777665543 345566677778777
Q ss_pred chhhhHHhhhhhhhc-CCchhHHHHHHHHHHHHHHHHHHH-----HHHHHh-----ccchHHHHHHHHHHHHHHH-HHhh
Q psy2966 77 DNCFTMMYILVLEYV-GPSWRTFVANMSIAIFFTLAASLL-----PWIAYY-----VANWQYLCVITSLPLLVAV-ITPW 144 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~-----~~~~~~-----~~~w~~~~~~~~~~~~~~~-~~~~ 144 (237)
+...+...++..|.. ++++|++..++ ...+..+|..++ +++... ..+|+..+.+.+++.++.. +..+
T Consensus 114 ~~~~~~~~al~~~~~~~~~~R~~~~~~-~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 114 SFVNIPYWSLVPAITLDPRERESLSTF-RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred HhhcccHhhCcccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 766777788888987 56889988877 455555544433 222211 1379988887776655544 3445
Q ss_pred ccccC
Q psy2966 145 IVPES 149 (237)
Q Consensus 145 ~~pe~ 149 (237)
..||+
T Consensus 193 ~~~e~ 197 (437)
T TIGR00792 193 GTKER 197 (437)
T ss_pred CCEec
Confidence 56775
No 98
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.38 E-value=3.1e-12 Score=107.14 Aligned_cols=141 Identities=10% Similarity=0.046 Sum_probs=111.2
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
.+.+...++..++..++.++.|++.||+|||+.+..+.++.++..+..++.++.+.+++.+++.|++.+...+....++.
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 341 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT 341 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888999999999999999999999988888888888888889998888899999988877788888999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhccccC
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPES 149 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe~ 149 (237)
|.+|++.|++..+..++....+|.++++.+.+.+. +|+..|...+++.++..+. .+.+++.
T Consensus 342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999877654345566777777777766653 7888888766665544433 3344443
No 99
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.37 E-value=6e-12 Score=105.44 Aligned_cols=136 Identities=15% Similarity=0.057 Sum_probs=80.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh---hc-----cHHHHHHHHHHHhhccchh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF---AS-----TFWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~-----~~~~~~~~~~l~g~~~~~~ 79 (237)
..+.+++.+...++..+++++.|+++||+|||++++++..+.++....... .. ......+.++..|.+....
T Consensus 45 ~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (420)
T PRK09528 45 GTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAG 124 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 678899999999999999999999999999999988766655544322111 11 1111122233333333333
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhhcc
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
.+....+..+ . .+++++..+. ......+|..++|.+++.+. +|+..|+..+++.++..+..+++
T Consensus 125 ~~~~~~~~~~-~-~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 125 AGAIEAYIER-V-SRRSGFEYGR-ARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred hhhhhhHHHH-H-Hhhccccchh-hHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcc
Confidence 3333333222 2 2234445554 34445566666666655442 78888888776665555555444
No 100
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.37 E-value=9.6e-12 Score=104.19 Aligned_cols=141 Identities=13% Similarity=0.046 Sum_probs=110.0
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHhhccchhhhHHh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS----TFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
...+...++..++..++.++.|++.||+|||+++..+.++.++......... +.+.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888889999999999999999999999999998888766665532 235567788999998888888889
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHH-HHHHhhccccC
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---------NWQYLCVITSLPLLV-AVITPWIVPES 149 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~pe~ 149 (237)
.++.|.+|++.|+++.++.......+|..++|.+++.+. +|+..|...+++.++ .++..+++||+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999323566777777777776542 488888776665444 44556667877
No 101
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.37 E-value=7.1e-12 Score=105.98 Aligned_cols=134 Identities=12% Similarity=0.092 Sum_probs=101.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFAS-TFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+.+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++.+... +...+.+...+.+++.|...+...+
T Consensus 44 ~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~a 123 (493)
T PRK15462 44 DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSC 123 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHH
Confidence 56677888888888899999999999999 999999999999988877665533 2233344444444556666677788
Q ss_pred hhhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH
Q psy2966 86 LVLEYVGPS--WRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT 142 (237)
Q Consensus 86 ~~~e~~~~~--~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~ 142 (237)
+++|.+|++ +|.++.++ ...+.++|+.++|.+.+.+. +|++.|...++..+++++.
T Consensus 124 lv~elfp~~~~~R~sgf~i-~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 124 LLGELYEPTDPRRDGGFSL-MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHCCCCCccccceehH-HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 999999986 68888888 55566789999998888763 7999888766544444333
No 102
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.37 E-value=1.3e-11 Score=102.50 Aligned_cols=139 Identities=9% Similarity=0.017 Sum_probs=105.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.+...+....+.
T Consensus 251 ~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~ 330 (393)
T PRK15011 251 EKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYF 330 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777788999999999999999988777666555544444567777777888888887777677777888
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
.|.+|++ |+++.++ ++....+|..++|.+++.+. +|+..+.+..++.++..+..+++||
T Consensus 331 ~~~~p~~-~g~~~~~-~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 331 QDLMPGQ-AGSATTL-YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHhCCCC-cchHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999864 8888888 55566777777777776653 6888888877777777777766665
No 103
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.36 E-value=9.8e-12 Score=106.34 Aligned_cols=130 Identities=8% Similarity=0.011 Sum_probs=100.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc-ccchHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH-FGRIPALVGTNLTGFVAGVATAFAS-TFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+.+.++..+.+........+++|+++|| +|||+.++.+.++.+++..++++++ +.+.+.+.+++.|++.|...+...+
T Consensus 56 ~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~ 135 (500)
T PRK09584 56 EADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSS 135 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHH
Confidence 3445555555555555556789999999 5999999999999999988888764 5566777889999999988888889
Q ss_pred hhhhhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHH
Q psy2966 86 LVLEYVGPSW--RTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLV 138 (237)
Q Consensus 86 ~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 138 (237)
++.|++|+++ |..+.++ +..+.++|..++|.+++.+. +|++.|.+.++..++
T Consensus 136 l~~~~f~~~~~~~~~~~~~-~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 136 LLSTCYEKDDPRLDGAFTM-YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHhcCCCchhhhhcchH-HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9999998754 3446666 67788888988888887763 799998886654333
No 104
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.35 E-value=1.2e-11 Score=100.35 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=120.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIP-ALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
+.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+...+..++.|++.+...+....+
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 289 (352)
T cd06174 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL 289 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH
Confidence 567788899999999999999999999999999 9999999999999988888888889999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWI 145 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 145 (237)
..|..|+++|++..++ ......++..+++.+.+... +|+..+.+.+++.++..+..++
T Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 290 ASELAPPEARGTASGL-FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHhhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999 77888888888888877653 7888888877777666555443
No 105
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.35 E-value=6.4e-11 Score=101.27 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=110.0
Q ss_pred CCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHhhccchhh
Q psy2966 6 AQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-----ASTFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~ 80 (237)
+|+...+++.++..+...+.++++|.++||++||++++.+.++.++.....++ ..+.+.+++.-++.|++.+...
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999998877665544433 2478889999999999999999
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhh
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 144 (237)
|...+.+.|+.|+++...+.++ .++..+++.++||.+++.+- |-.+.|++.++..++.+....
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al-~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~ 187 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANAL-NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALL 187 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 77777888888887777653 445566665554444433333
No 106
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.34 E-value=1.6e-11 Score=102.88 Aligned_cols=142 Identities=13% Similarity=-0.024 Sum_probs=93.5
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccc-hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGR-IPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
++.+ ..+.|++.++..++..+++++.|.++||+|| |+++.++.++.++......+.++++.+.+.|++.|++.+...+
T Consensus 33 ~g~s-~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (418)
T TIGR00889 33 LHFS-GAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA 111 (418)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence 3444 6789999999999999999999999999965 7788888888888888888888999999999999987665555
Q ss_pred HHhhhh----h----hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 82 MMYILV----L----EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 82 ~~~~~~----~----e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
...+.. . |......|.+..+. .+..+|+.+++.+. ....|. .|+..++..++..+..+++||+|
T Consensus 112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G~---lG~~ig~~l~g~l~-~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 112 LTNSISYANLPQAGLDVVTDFPPIRVMGT---IGFIAAMWAVSLLD-IELSNI-QLYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred HHHHHHHHHHhhcCCCchhcCCCeeeehh---HHHHHHHHHHHHhc-ccchhH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 544432 2 22222234443332 34444444444331 111243 34444444444444556778875
No 107
>PRK09952 shikimate transporter; Provisional
Probab=99.34 E-value=3e-11 Score=101.85 Aligned_cols=136 Identities=19% Similarity=0.328 Sum_probs=98.0
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh---h-ccHHHHHHHHHHHhhccchhhhHHhhhhhh
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF---A-STFWQFAICRFFVGLAFDNCFTMMYILVLE 89 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 89 (237)
......+...++.++.|+++||+|||+.++.+.++..++.+.... . ++.+.+.+..++.+++.+...+..++++.|
T Consensus 291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 370 (438)
T PRK09952 291 IGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTE 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566778889999999999999988877665554433222 2 234444455666678777778888999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 90 YVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV-----ANWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 90 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
.+|++.|+.+.++.+..+..+++.++|.+.+.+ ++|...+.+..+..++..+..+.++|+
T Consensus 371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999988876666667878888777654 247777777777777666666666765
No 108
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.33 E-value=1.9e-11 Score=101.85 Aligned_cols=140 Identities=17% Similarity=0.127 Sum_probs=109.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+...+...++..++.++.|++.||+|||+.+..+.+...++.+...+.++.+.+.+..++.|++.+...+...++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (406)
T PRK11551 254 RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALA 333 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678888889999999999999999999999998887777777766666677777777777888888777888889999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
.|.+|+++|+++.++ ......+|..++|.+.+.+. +|...+.......+...+..+.+.+
T Consensus 334 ~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 334 PLFYPTQVRGTGVGA-AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHcchhhhhhhhhH-HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 67777888888888887763 4555555555444444444444433
No 109
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.30 E-value=2.1e-11 Score=99.98 Aligned_cols=131 Identities=18% Similarity=0.129 Sum_probs=105.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTF--WQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+.+.+...+...++..+++++.|++.||+|||+.+..+.++.+++.+...+.++. ..++...++.|++.+...+..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 318 (377)
T TIGR00890 239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPS 318 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHH
Confidence 4566778888999999999999999999999999998888888887777665532 33445567788887877778888
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVA 139 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 139 (237)
++.|.+|+++|++..++ ......+|..++|.+.+.+. +|+..+.+.+++.+++
T Consensus 319 ~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 319 LVSDIFGPANSAANYGF-LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhhhhhhhhHhHH-HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999 77778888888888777653 6888887776665543
No 110
>PRK12382 putative transporter; Provisional
Probab=99.29 E-value=5.8e-11 Score=98.57 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=109.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.+...+.++.+...+..++.|++.+...+.......|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45556677778889999999999999999999988888888887777778888888888999998888888888889999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHh
Q psy2966 91 VGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 91 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 143 (237)
+|+++|+++.++ .+....+|..++|.+.+.+. +|+..+.+.++..++..+..
T Consensus 331 ~~~~~~g~~~g~-~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 331 VPSQVRGTALGG-YAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999 77777888888887777653 78888888777666555443
No 111
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.28 E-value=9.3e-11 Score=96.47 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=105.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+...+...++.++.|++.||+|||+.+..+.++..+......+.++.+.+.+.+++.|++.+...+....+.
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 313 (375)
T TIGR00899 234 DKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYF 313 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666777888999999999999998887776666655555667777778888889988888888888899
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
.|..|++ ++++.++ ++....+|..++|.+.+.+. +|+..+++.++..++..+...+++|
T Consensus 314 ~~~~~~~-~~~~~~~-~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 314 QDLMPGR-AGAATTL-YTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHhCcch-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 9998765 6688888 66666688888887776652 6888888877777776666555543
No 112
>TIGR00898 2A0119 cation transport protein.
Probab=99.27 E-value=6.2e-11 Score=101.64 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=104.1
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHhhccchhhhHHhhhhhhhc
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTF--WQFAICRFFVGLAFDNCFTMMYILVLEYV 91 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 91 (237)
......+..+++.++.+++.||+|||+.+.++.++.+++.+...+.++. +...+..++.+++.+..++..+.+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445556677888999999999999999999988888888777765433 44555556667777777888899999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 92 GPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 92 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
|++.|+++.++ ......+|.+++|.+..... ++...+.+.++..++..+..+++||+
T Consensus 440 p~~~r~~~~g~-~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 440 PTVVRNLGVGV-CSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred cHHHHhhhHhH-HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCC
Confidence 99999999999 67777899999998887322 34456666666666666667788998
No 113
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.26 E-value=5.4e-11 Score=99.06 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=108.1
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhc
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYV 91 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 91 (237)
+.+.+...++..++.+..|++.||+|||+.+..+.++..+..+...+.++.+.+.+.+++.|++.+...+....++.+..
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 340 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence 44555667788888899999999999999999888888777777777778888888899999999988999889999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhh
Q psy2966 92 GPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 92 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 144 (237)
|++.|++..++ +.....+|..++|.+.+.+. +|+..|+..+++.++..+..+
T Consensus 341 ~~~~~g~~~~~-~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 341 SNQIAGRIFSY-NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CcccceeeehH-HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999888 67777888888888877653 688888887777666554443
No 114
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.23 E-value=1.6e-10 Score=98.15 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=92.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHH--HHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGV--ATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
..+.++..+...++..++.+++|+++||+|||+.+.....+..+... .....++.+...+.+++.|++..........
T Consensus 293 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 372 (467)
T PRK09556 293 KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGV 372 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45677888888999999999999999999999877665444333322 2223456666667788888654434444446
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHhc---------------cchHHHHHHHHHHHHHHHHHhh
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFT-LAASLLPWIAYYV---------------ANWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~-~g~~~~~~~~~~~---------------~~w~~~~~~~~~~~~~~~~~~~ 144 (237)
...|.+|++.|+++.++ .+.... .|..++|.+.+.+ .+|+..|.+..+..+++.+..+
T Consensus 373 ~~~~~~p~~~~g~a~gi-~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 373 AAVGFVPKKAIGVANGI-KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhhcchhhHHHHHHH-HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999 554444 4656655554433 2488888777666666554444
No 115
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.22 E-value=2.1e-10 Score=98.33 Aligned_cols=133 Identities=20% Similarity=0.129 Sum_probs=86.3
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHhhccchhhhHHhhhhhhhcC
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS----TFWQFAICRFFVGLAFDNCFTMMYILVLEYVG 92 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~ 92 (237)
...++..++.++.++++||+|||+.++++..+.+++..+..+.. +...+...-+...++..+..+..+.+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 34456667888999999999999999888877776665555421 11111111111122222345567788899999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------chHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 93 PSWRTFVANMSIAIFFTLAASLLPWIAYYVA-------------NWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 93 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
++.|+++.++ .+....++.+++|.+...+. ++...+.+.++..++..+..+++||++
T Consensus 423 ~~~R~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 423 TRYRSTAHGI-SAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred hhHHHHHHHH-HHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 9999999999 55666677777776665432 123455655555555555567789983
No 116
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.21 E-value=6.7e-11 Score=100.19 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=102.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc--cchHHHHH--HHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF--GRIPALVG--TNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
..+.++..+...++..++.++.|.++||. ++|+...+ +.++.++..+.....++.+.+++.+++.|++.+...+..
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHH
Confidence 45678888888999999999999999973 34433333 333334444555567788888889999999999888999
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAV 140 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 140 (237)
.+++.|.+|++++++..++ ++....+|.+++|.+.+.+. +|+..|++.++..++..
T Consensus 355 ~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGL-VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHhhHHHHhhHHhH-HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 9999999999999999999 78888899999998887652 58888887776655443
No 117
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.20 E-value=2.8e-10 Score=95.31 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=110.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.+...+.++.+...++.++.|++.+...+...+++
T Consensus 258 ~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 337 (417)
T PRK10489 258 AAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLL 337 (417)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999998888888888888777777777778877777888889988887777888899
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHH-HHHHHHHHhhccccCh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSL-PLLVAVITPWIVPESA 150 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~-~~~~~~~~~~~~pe~p 150 (237)
.|..|++.|+++.++ +.....+|..++|.+.+.+. +++..++..+. ..++.++....+|+.+
T Consensus 338 ~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 338 QTQTPDEMLGRINGL-WTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HhhCCHHHHHHHHHH-HHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999 66666777777777776664 34445554443 3444555556667763
No 118
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.18 E-value=3.8e-10 Score=94.96 Aligned_cols=140 Identities=13% Similarity=0.055 Sum_probs=86.5
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH--h--hccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA--F--ASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
.+.+...+...++..++.++.|+++||+|||+.+.++.++.++...... . .++....+..-.+.++..+...+...
T Consensus 279 ~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
T PRK10406 279 NVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISG 358 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777788899999999999999988776554433332111 1 22333222222223333333445677
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
.+.+|++|++.|+++.++.++.+..+.....|.+...+. .|...+++.++..++..+..+++++
T Consensus 359 ~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 359 ILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999766655543444666555442 3555556555555555555555443
No 119
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.17 E-value=1e-09 Score=93.45 Aligned_cols=138 Identities=16% Similarity=0.065 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh--cc-HH-HHHHHHHHHhhccch-hhhHHhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA--ST-FW-QFAICRFFVGLAFDN-CFTMMYI 85 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~-~~-~~~~~~~l~g~~~~~-~~~~~~~ 85 (237)
..+......++..++.++.++++||+|||+.++.+.++.+++.+..... .+ .. ....+.++.+.+.+. ..+..+.
T Consensus 308 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (479)
T PRK10077 308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 387 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHH
Confidence 3455556677888999999999999999999999998888887766542 11 11 222233333333332 2366789
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHH----HHHH--Hh---ccchHHHHHHHHHHHHHHH-HHhhccccC
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLL----PWIA--YY---VANWQYLCVITSLPLLVAV-ITPWIVPES 149 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~----~~~~--~~---~~~w~~~~~~~~~~~~~~~-~~~~~~pe~ 149 (237)
++.|.+|+++|+++.++ ......++.+++ |.+. .. ..+|+..+++.++..++.. +.+++.||+
T Consensus 388 ~~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 388 LLSEIFPNAIRGKALAI-AVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred HhHhhCChhHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999998 555555555554 3333 11 1246666666555544443 344566887
No 120
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.16 E-value=8.7e-11 Score=100.44 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=90.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA--STFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
..+.++..+...++..++.++.|+++||+|||+.+..+.++..+..+..... .+.+.+.+..++.+....+..+..+.
T Consensus 310 ~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (496)
T PRK03893 310 PHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence 4577888899999999999999999999999999888776666555443332 33333444444444433334566778
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITS 133 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~ 133 (237)
++.|.+|+++|++.+++ ......+|..++|.+.+.+. +|+..+...+
T Consensus 390 ~~~~~~~~~~~g~~~~~-~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 390 LIGGYFDTEQRAAGLGF-TYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HHHhhCCHHHhhcccch-hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 89999999999999998 55666788888888877653 5666554433
No 121
>KOG0253|consensus
Probab=99.14 E-value=1e-10 Score=93.28 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=100.4
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchh
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWR 96 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r 96 (237)
+..+....|.++.+.+.||+|||+.+..+.++++++.+......+.....+..+..-++..+.+.+.+.|..|.+|.+.|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 44566779999999999999999999999999999998887765554455555555555666777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 97 TFVANMSIAIFFTLAASLLPWIAYYVA-NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
+++.|.+ ....-+|+++.|+++-..+ +-.....+.+...+++.++..++|-.
T Consensus 469 atgvGtc-SsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 469 ATGVGTC-SSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred hcchhhh-hhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 9999994 5567889999999984443 22334445566666666666777643
No 122
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.13 E-value=4.5e-10 Score=94.95 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=99.3
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-----hc------cHHHHHHHHHHHhhccc
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-----AS------TFWQFAICRFFVGLAFD 77 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~------~~~~~~~~~~l~g~~~~ 77 (237)
.+.++......++..++.++.|+++||+|||+.+.++.++.+++.++..+ .+ +...+....++.+....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (481)
T TIGR00879 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAM 398 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHc
Confidence 45677788888899999999999999999999999888877777666652 11 22222223333333222
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhccccCh
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPESA 150 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe~p 150 (237)
...+....++.|.+|++.|+++.++ ......+|.+++|.+.+... +|++.|++.+++.++..+. .++.||++
T Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 399 GWGPVPWVIVSEIFPLSLRPKGISI-AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred cccCeehhhhhccCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 3346667788999999999999999 67777888888887766542 6787777777665555444 44567763
No 123
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.13 E-value=1.6e-09 Score=89.73 Aligned_cols=132 Identities=9% Similarity=-0.058 Sum_probs=107.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.+...+...++.+++.++.+++.||+|+|+.+.++.++..+.....++.++.+.+++..++.|+..+...+....++
T Consensus 239 ~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i 318 (382)
T TIGR00902 239 ASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYI 318 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI 141 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 141 (237)
.+. |+++|+++.++......++|..+++.+++.+. ++ ..+...+.+.+.+.+
T Consensus 319 ~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 319 AAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 998 99999988888333566777777777777664 33 334444554444433
No 124
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.12 E-value=2.2e-09 Score=91.03 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=116.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccch--HHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHhhccc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRI--PALVGTNLTGFVAGVATAF--------ASTFWQFAICRFFVGLAFD 77 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~l~g~~~~ 77 (237)
..+...+..+..+..++|++++|++.||+|.| ++++.+++.+.+..+...+ .++.+.+.+.-++.|++.|
T Consensus 316 ~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G 395 (477)
T PF11700_consen 316 TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMG 395 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhh
Confidence 34556667777888999999999999999999 8888888887666666555 5788889999999999999
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
..++..-++.+|+.|+++.+..+|+ +.+..-..+.++|++.+... +.|+.+....++.++..++.+.+++.
T Consensus 396 ~~qs~sRs~~~~LiP~g~e~efFgl-y~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 396 GIQSASRSLFSRLIPPGREAEFFGL-YAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999999999999999 88888888888888777653 56777777777777776666666554
No 125
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.11 E-value=5.9e-09 Score=86.53 Aligned_cols=141 Identities=7% Similarity=-0.169 Sum_probs=90.3
Q ss_pred CchhhHH--HHHHHHhhhhhhhhh-hcccccccchHHHHHHHHHH-HHHHHHHH-h--hcc-HHHHHHHHHHHhhccchh
Q psy2966 8 DTLPTLA--QAIFFCGAIVGGLVF-GWVADHFGRIPALVGTNLTG-FVAGVATA-F--AST-FWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~~~~-~i~~~~~~-~--~~~-~~~~~~~~~l~g~~~~~~ 79 (237)
..+.|+. .+...+...+.+++. ++..||+|||+..++...+. +......+ + ..+ ...+....++.+++.+..
T Consensus 35 ~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 114 (390)
T TIGR02718 35 LTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQ 114 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5677775 355677777788887 55799999999865554322 21222222 1 222 223344445555666767
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
.+....+..|..++++++...+. ...+..+|.++++.....+ .+|+..|++.++..++..+..++++|+
T Consensus 115 d~~~d~~~~~~~~~~~~~~~~~~-~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 115 DIATDGMAAEHFNGRTLAKGNAV-QIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHhCCHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78888888899988888877776 5666677777777544433 289999998887766555444444443
No 126
>PRK03545 putative arabinose transporter; Provisional
Probab=99.10 E-value=3.4e-09 Score=87.99 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=96.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHH-HHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG-VATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.++..+...++..+++++.|++.||+|||..... ..+..++. ......++.+.+.++.++.|++.+...+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 318 (390)
T PRK03545 240 ENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVK 318 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4567888888889999999999999999998875444 33333333 333455677777788888888877666777788
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHh
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 143 (237)
+.|..| +.|+++.++ +.....+|..++|.+++.+. +++..+...+.+.+++.+..
T Consensus 319 ~~~~~~-~~~~~~~g~-~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 319 VLKLAP-DATDVAMAL-FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHhCC-CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 888876 578988887 55556667777777766543 67888887776666654443
No 127
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.10 E-value=7e-10 Score=94.55 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=94.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccch-------HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRI-------PALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 80 (237)
....+...+...++..++.+++|+++||+||| .......++.++..++....++.+...+..++.+++.+...
T Consensus 287 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 366 (476)
T PLN00028 287 LETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAAC 366 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 34567788888899999999999999999876 23333333333333444445555555555566666655555
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhhccc
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV--ANWQYLCVITSLPLLVAVITPWIVP 147 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~p 147 (237)
+..+++..+.. ++.|+...++ .+.+..+|+.++|.+.... .+|+..|++.+++.+++.+..++++
T Consensus 367 ~~~~~~~~~~~-~~~~g~~~g~-~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 367 GATFGIVPFVS-RRSLGVISGL-TGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhcccCcccC-hhhchhhhhh-hhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 66666677765 4689999998 5666678888888775532 2588888888877777766666665
No 128
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.10 E-value=2.3e-09 Score=88.70 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=98.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...++..++.++.|++.||+|+|+.+..+..+..++..... . ........++.|++.....|....+.
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~ 310 (381)
T PRK03633 234 DASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWA 310 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567778888899999999999999999999998888777766654432 2 22334456677776666788888889
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhh
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 144 (237)
.|..|+++++...+. ......+|..++|.+.+.+. +|++.|.+.+.+.+...+..+
T Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 311 CEKVEHHELVAMNQA-LLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 999998887776666 56677888888888777663 677777776666655544433
No 129
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.09 E-value=5.4e-10 Score=92.16 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=93.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHH--HHHHh--hccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG--VATAF--ASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
+.+.+...+...++..++.++.|+++||+|||+.+.....+..+.. ....+ .++.+......++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (394)
T TIGR00883 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPM 333 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhH
Confidence 4567777888889999999999999999999998775544443333 12222 2456666777788888888888999
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLP 135 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~ 135 (237)
.+++.|.+|+++|+++.++.++.+..+|..++|.+.+.+. +|+..++.....
T Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 9999999999999998887555666667777777766542 376665554443
No 130
>KOG0569|consensus
Probab=99.09 E-value=5.2e-09 Score=87.90 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=93.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh----ccH--H---HHHHHHHHHhhccc-
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA----STF--W---QFAICRFFVGLAFD- 77 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~--~---~~~~~~~l~g~~~~- 77 (237)
..++.+.+....+...+..+++.++.||+|||+.++.+..+..+..+++... ... | ..+++.++..++.+
T Consensus 304 ~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~ 383 (485)
T KOG0569|consen 304 PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAI 383 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Confidence 3455677888888899999999999999999999999999998888777652 111 1 12233333333222
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHH---HHHHHHhccchHHHHHHHHHH-HHHHHHHhhccccC
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASL---LPWIAYYVANWQYLCVITSLP-LLVAVITPWIVPES 149 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~---~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~pe~ 149 (237)
+.-|+.+-+.+|++|++.|+.+.+++....+.....+ -|.+....++ +.|+...++ .+..+..+..+|||
T Consensus 384 G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 384 GPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred CCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence 2468888999999999999998887443333322222 2444444444 445554444 44556667789999
No 131
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.3e-08 Score=81.22 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=113.7
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ ....++.+++..+...+.+++..++++|+|.++.+..++++.+++..+-... +.+.++.+-.+.|.+.+.....
T Consensus 42 ~gls-~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVL 119 (395)
T COG2807 42 LGLS-FSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVL 119 (395)
T ss_pred hccc-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHh
Confidence 4444 5678999999999999999999999999999999999999999998887776 7788899999999999999999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHH----HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTL----AASLLPWIAYYVANWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~----g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 144 (237)
.+..+.+.+|++ -+..+++ |...... ++.+.+.+.....+||....+.+.+.+++++.++
T Consensus 120 LPslIK~~Fpk~-~~~mtgl-Ys~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 120 LPSLIKRDFPKR-VGLMTGL-YSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred hhHHHHhhcccc-hhhHHhH-HHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999877 4566666 5544444 5555555555556899999888888888876664
No 132
>PRK09669 putative symporter YagG; Provisional
Probab=99.08 E-value=4.9e-09 Score=88.60 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=88.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc----ccch-HHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHhhcc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH----FGRI-PALVGTNLTGFVAGVATAFAST------FWQFAICRFFVGLAF 76 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~ 76 (237)
..+.+.+.++..+...+..|+.|.++|| +||| +.++++.+..++...+....++ ...+++..++.+.+.
T Consensus 44 ~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~ 123 (444)
T PRK09669 44 AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVY 123 (444)
T ss_pred HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999998 7774 5666776777666655444332 344555555666655
Q ss_pred chhhhHHhhhhhhhc-CCchhHHHHHHHHHHHHHHHHHHHH----HHHHhc------cchHHHHHHHHHHHHHHH-HHhh
Q psy2966 77 DNCFTMMYILVLEYV-GPSWRTFVANMSIAIFFTLAASLLP----WIAYYV------ANWQYLCVITSLPLLVAV-ITPW 144 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~----~~~~~~------~~w~~~~~~~~~~~~~~~-~~~~ 144 (237)
.....+..++.+|+. ++++|.+..+. -..+..+|..+++ .+.... .+|+..+.+.+++.++.. +..+
T Consensus 124 t~~~ip~~al~~~~t~~~~eR~~l~~~-r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 124 TAINVPYCAMPGAITNDPRERHSLQSW-RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HhhcchHHHhHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 566667778899987 55788876665 3333344433332 222222 256666666555544433 3334
Q ss_pred ccccC
Q psy2966 145 IVPES 149 (237)
Q Consensus 145 ~~pe~ 149 (237)
..+|.
T Consensus 203 ~~~e~ 207 (444)
T PRK09669 203 MTKER 207 (444)
T ss_pred CeEEe
Confidence 44553
No 133
>PRK03699 putative transporter; Provisional
Probab=99.07 E-value=1.8e-09 Score=89.74 Aligned_cols=140 Identities=11% Similarity=0.002 Sum_probs=103.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+...+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+..++...++.
T Consensus 240 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 319 (394)
T PRK03699 240 LEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLG 319 (394)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999999999999998887777776666666667776666777888888887788888888
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
.|..|.+ +++..+. ......+|..++|.+.+.+. +++..++...++.++..+.....+..
T Consensus 320 ~~~~~~~-~~~~~g~-~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 320 SQQTKVA-SPKLVNF-ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHccCC-CHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8877644 5666666 45566678888887776653 67777776666655554444444443
No 134
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.07 E-value=2.2e-09 Score=88.42 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=90.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchH--HHH------HHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIP--ALV------GTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 79 (237)
..+.++..+...++..++.++.|+++||+|||+ ... .+.++..+........++.+.......+.+.+.+ .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (399)
T TIGR00893 250 ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-A 328 (399)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-h
Confidence 456778888888999999999999999999996 111 1111111111111122334444444444444444 7
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-hHHHHHHHHHHHHHHHHH
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---N-WQYLCVITSLPLLVAVIT 142 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~ 142 (237)
.+....+..|.+|+++|+++.++ ......+|..++|.+.+.+. + |+..+.+.++..++..+.
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 329 GAIGWALISDNAPGNIAGLTGGL-INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhHHHHHHHhhcChhHHHHHHHH-HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999 67777888888888877653 4 888877766665554443
No 135
>KOG2325|consensus
Probab=99.07 E-value=8.1e-09 Score=86.32 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=109.9
Q ss_pred ccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccc-hHHHHHHHHHHHHHHHHH-Hh---hc-cHHHHHHHHHHHhhc
Q psy2966 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGR-IPALVGTNLTGFVAGVAT-AF---AS-TFWQFAICRFFVGLA 75 (237)
Q Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~-~~---~~-~~~~~~~~~~l~g~~ 75 (237)
|...+ ....|++.++..++.+++++..|....|.+. |+.++.+.++..+++++. +. .+ ..+.++++|++.|++
T Consensus 65 D~~A~-~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg 143 (488)
T KOG2325|consen 65 DPTAT-ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG 143 (488)
T ss_pred CCCCC-cchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC
Confidence 34444 5678999999999999999999999999985 667788888888888877 33 23 678999999999998
Q ss_pred cchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c-----------hHHHHHHHHHHHHHH
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-----N-----------WQYLCVITSLPLLVA 139 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~-----------w~~~~~~~~~~~~~~ 139 (237)
.+ .....-+|+++....+.|.++.+. ...+..+|..+||.+...+. + +..+-++..+..++.
T Consensus 144 ~~-n~a~lR~Y~a~~s~~~dR~rA~a~-~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~ 221 (488)
T KOG2325|consen 144 VG-NFAVLRAYIADASTVEDRPRAFAA-TSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIY 221 (488)
T ss_pred cc-cHHHHHHHHHhccCccchHHHHHH-hhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHH
Confidence 77 677888999999999999998887 56666777777776665542 1 233445555554444
Q ss_pred H-HHhhccccChH
Q psy2966 140 V-ITPWIVPESAR 151 (237)
Q Consensus 140 ~-~~~~~~pe~p~ 151 (237)
+ +..+++.|.++
T Consensus 222 ~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 222 IVIILFFFKEVYR 234 (488)
T ss_pred HHHHHhheeeccc
Confidence 3 34455677643
No 136
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.06 E-value=4.9e-09 Score=88.17 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=89.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-STFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.++..+...++.+++.+++++++||+|+|+.+..+.++.+++.+...+. ++.+.+.+..++.|++.+...+..+++
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL 335 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777889999999999999999999999999988888777666554 455666777788899998888999999
Q ss_pred hhhhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 87 VLEYVG-------PSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 87 ~~e~~~-------~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
++|..+ ++.+|...++ .+....+|..+++.+.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 336 VADTVDYGEWKTGVRAEGLVYSV-RTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HhhhhhhhhhhcCccchHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999876 4556888887 6666677777766665543
No 137
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.05 E-value=1.3e-09 Score=90.49 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=89.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGV-ATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.++..+...++..++.++.|++.||+|||+.+..+.++..+... .....++.+.+.+..++.|++.+...+..+.+
T Consensus 273 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (405)
T TIGR00891 273 PHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKH 352 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHH
Confidence 45677888889999999999999999999999998887766533332 23334566666666677777666677888899
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
+.|.+|+++|+++.++ ......+|..++|.+.+.+.
T Consensus 353 ~~~~~~~~~~~~~~g~-~~~~~~~g~~~g~~~~g~l~ 388 (405)
T TIGR00891 353 LGEYFPTDQRAAGLGF-TYQLGNLGGALAPIIGALLA 388 (405)
T ss_pred HhhhCCcchhHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 56666777788887776653
No 138
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.05 E-value=2.2e-09 Score=90.30 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=94.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccc----cccchH-HHHHHHHHHHHHHHHHHhh-c-------cHHHHHHHHHHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVAD----HFGRIP-ALVGTNLTGFVAGVATAFA-S-------TFWQFAICRFFVGL 74 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~-~-------~~~~~~~~~~l~g~ 74 (237)
+...+++..+..+..++..|+.|.++| |+|||+ .++++.+..+++.+++... + ....+.+..++..+
T Consensus 36 ~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~ 115 (428)
T PF13347_consen 36 PALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDI 115 (428)
T ss_pred HHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 456677778888888899999999999 899776 5556778888877776655 3 12234556666688
Q ss_pred ccchhhhHHhhhhhhhcC-CchhHHHHHHHHHHHHHHHHH----HHHHHHHhcc------chHHHHHHHHHHHHHHH-HH
Q psy2966 75 AFDNCFTMMYILVLEYVG-PSWRTFVANMSIAIFFTLAAS----LLPWIAYYVA------NWQYLCVITSLPLLVAV-IT 142 (237)
Q Consensus 75 ~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~----~~~~~~~~~~------~w~~~~~~~~~~~~~~~-~~ 142 (237)
+.........++..|+.+ +++|.+..+. -..+..+|.+ +.+.+....+ +|++...+.+++.++.. +.
T Consensus 116 ~~t~~~i~~~al~~~lt~~~~~R~~l~~~-~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~ 194 (428)
T PF13347_consen 116 AYTFVQIPYNALIPELTPDPDERTRLSSW-RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLIT 194 (428)
T ss_pred hhhhccCchhhcCccccccHhhhhhHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhh
Confidence 888888888999999998 4688887776 4444455554 3333332222 57777776666554443 34
Q ss_pred hhcccc
Q psy2966 143 PWIVPE 148 (237)
Q Consensus 143 ~~~~pe 148 (237)
.+..+|
T Consensus 195 ~~~~ke 200 (428)
T PF13347_consen 195 FFFVKE 200 (428)
T ss_pred hheeee
Confidence 444566
No 139
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=88.82 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=118.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+..++.....+..++|++++|++.||+|.|+++..+.++..+.++...+......+.++-.+.|.+.|+.++..-+|.
T Consensus 287 ~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~ 366 (438)
T COG2270 287 STELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYL 366 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45667777888889999999999999999999999999999999988888877777788888999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
++..|+++-++.+|+ +++..-.+++++|++.+.. ++-|.-+....++..+..+.++.+|+.
T Consensus 367 ~~lvp~~k~~~fFgl-yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 367 ARLVPKGKEGRFFGL-YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHhCCCccccceeeh-hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999 8888888888888777665 355666666666666666666666655
No 140
>PRK10504 putative transporter; Provisional
Probab=99.04 E-value=2.7e-09 Score=90.78 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=89.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA---STFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
+.+.++......++..++.++.+++.||+|||+.+..+.++.++...+..+. ++.+.+.+..++.|++.+..++...
T Consensus 296 ~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 375 (471)
T PRK10504 296 PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMN 375 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777788888999999999999999998888777776665553 3334444556777888888888888
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.+..+..|++.|+.+.++ .+....+|..+++.+.+.+
T Consensus 376 ~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 376 TLTLKDLPDNLASSGNSL-LSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHcCCHHhccchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 6777777777777666554
No 141
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.02 E-value=2.8e-09 Score=87.06 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=98.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST-FWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.+...+...++..++.++.+++.||+|||+.+..+..+.++......+.++ .+.+.+..++.|++.+...+....+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (365)
T TIGR00900 246 STHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTL 325 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999999999999998887777777777777664 7788888999999999889999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+.|..|+++|++..++ ......++..++|.+.+.+
T Consensus 326 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 326 LQRRVPAELLGRVFGA-QFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 7777778888888776654
No 142
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.02 E-value=9.3e-09 Score=85.55 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=96.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-ASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.+...+.+.++..++.+..+++.||+|||+.+..+..+..++...... ..+.... ..++.|++.+...+.....
T Consensus 239 ~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~ 316 (393)
T PRK09705 239 AQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLL 316 (393)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHH
Confidence 456788889999999999999999999999999988887777666655443 2222222 2345677777777777767
Q ss_pred hhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHH-HHhhccccCh
Q psy2966 87 VLEYVG-PSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAV-ITPWIVPESA 150 (237)
Q Consensus 87 ~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~-~~~~~~pe~p 150 (237)
..+..+ +++|++..++ .+....++..++|.+.+.+ ++|...+.+..+..+... ....+.||++
T Consensus 317 ~~~~~~~~~~~g~~~g~-~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 317 ALDHSVQPAIAGKLVAF-MQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777775 6788999888 4555556666666665554 356666766555544433 3455668874
No 143
>TIGR00895 2A0115 benzoate transport.
Probab=99.01 E-value=3.4e-09 Score=87.62 Aligned_cols=113 Identities=21% Similarity=0.272 Sum_probs=90.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA-FASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.++..+...++..++.++.|++.||+|||+.+....+ .++...+.. ..++.+...+..++.|++.+...+...++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (398)
T TIGR00895 284 LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL-GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYAL 362 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999955444433 333333333 35667777788899999999899999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+.|.+|+++|+++.++ ......+|..++|.+.+.+
T Consensus 363 ~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 363 MALFYPTAIRATGVGW-AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999 6667788888998877653
No 144
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.01 E-value=9.5e-09 Score=85.72 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=94.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHH-HHHHHHHHHHHHHHh-----hccHHHHHHHHHHHhhccchhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALV-GTNLTGFVAGVATAF-----ASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
..+.+...+...++..++.++.|+++||+|||+.+. .+.+..++..+.... .++.+...+..++.|++.+...+
T Consensus 256 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 335 (402)
T TIGR00897 256 TSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP 335 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999999999999988664 333333333222221 24566667778888887776544
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcc
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
......|.. +++|+++.++ .+....+|..++|.+.+.+. +|...+++.+++.++..+...++
T Consensus 336 -~~~~~~~~~-~~~~g~~~g~-~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 336 -LAAVFPTLA-PKHKGAAMSV-LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred -HHHHHHhhC-cchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 345566765 4689999999 78888888888888776653 67777777776665555444443
No 145
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.01 E-value=7.5e-09 Score=88.71 Aligned_cols=131 Identities=21% Similarity=0.192 Sum_probs=108.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
....|++.+...+|.++|+++.+.+.+|+++++.+..+.++.+++.+..++.++.+...+..++.|++.........+.+
T Consensus 253 a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~ 332 (524)
T PF05977_consen 253 ASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLV 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVA 139 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 139 (237)
.+..|++.||+.+++ +.+....+..+|.++.+.+. +-+..+.+.++..++.
T Consensus 333 Q~~~P~~~~GRv~si-~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 333 QLSVPDWVRGRVFSI-YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS 386 (524)
T ss_pred HHhCCHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999998 66666666666666655553 4455555555443333
No 146
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.97 E-value=1.1e-08 Score=87.30 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=74.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccc----cccc-hHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHhhcc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVAD----HFGR-IPALVGTNLTGFVAGVATAFAST------FWQFAICRFFVGLAF 76 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~ 76 (237)
...+|.+..+.-+..++..++.|.++| |+|| |+.++++.+..+++..+....++ +..+++..++.+++.
T Consensus 41 ~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~ 120 (473)
T PRK10429 41 VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTY 120 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 567788888888889999999999999 6698 56777787777777655544321 234445555666777
Q ss_pred chhhhHHhhhhhhhc-CCchhHHHHHHHHHHHHHHH
Q psy2966 77 DNCFTMMYILVLEYV-GPSWRTFVANMSIAIFFTLA 111 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g 111 (237)
.....+..++..|+. ++++|.+..+. -..+..+|
T Consensus 121 t~~~ip~~al~~~lt~~~~eR~~l~~~-~~~~~~ig 155 (473)
T PRK10429 121 TIMDIPFWSLVPTLTLDKREREQLVPY-PRFFASLA 155 (473)
T ss_pred HHHcchHHhhhHHhCCCHHHHHHHHHH-HHHHHHHH
Confidence 777778888999998 68999987776 33333443
No 147
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.97 E-value=1.2e-08 Score=85.52 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=79.2
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS--TFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
.+.+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....+ +........+..+++..+..+..+.+
T Consensus 266 ~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (426)
T PRK12307 266 GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKF 345 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 4556677788889999999999999999999998888777666554443322 22222222222223333334566778
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
+.|.+|++.|+++.++ ......++..++|.+.+.+.
T Consensus 346 ~~~~~p~~~~g~~~g~-~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 346 LYDYFPLEVRGLGTGL-IYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHhCcHHHHhhhhhH-HHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999998 45556667788888776654
No 148
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.97 E-value=7.3e-09 Score=88.07 Aligned_cols=144 Identities=14% Similarity=-0.015 Sum_probs=96.1
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhccccccc-----chHHHHHHHHHHH-HHHHHHHhhccHH-HHHHHHHHHhhc
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFG-----RIPALVGTNLTGF-VAGVATAFASTFW-QFAICRFFVGLA 75 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-i~~~~~~~~~~~~-~~~~~~~l~g~~ 75 (237)
++.+ ..+.+...+...+...+-.+ +|+++||++ ||+.++++.++.+ +.....+..++.. ...+..++.+++
T Consensus 56 lg~s-~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 133 (468)
T TIGR00788 56 LGLD-GARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALA 133 (468)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 4444 56677778888888877544 999999998 7777777766652 3333333334433 344478889999
Q ss_pred cchhhhHHhhhhhhhcCCchhHHHHHHHHHH---HHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTFVANMSIAI---FFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~---~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
.+...+...++..|..+ +++....+. ... ...+|.++++.+++.+. +|+..|++.++..++..+..+++||+
T Consensus 134 ~a~~dv~~da~~~e~~~-~~~~~~~~~-~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~ 211 (468)
T TIGR00788 134 KALYDVLVDSLYSERIR-ESPSAGPSL-VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKER 211 (468)
T ss_pred HHHHHHhHHHHHhhhhh-cCCCcCCCe-eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 99899999999999998 545433222 111 22356666666555542 79998888777766666666778886
Q ss_pred h
Q psy2966 150 A 150 (237)
Q Consensus 150 p 150 (237)
+
T Consensus 212 ~ 212 (468)
T TIGR00788 212 R 212 (468)
T ss_pred c
Confidence 3
No 149
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.97 E-value=1.4e-08 Score=86.05 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=82.5
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccc--cchHHHH-HHHHHHHHHHHHHHh--hccHHHHHHHHHHHhhccchhhhHH
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHF--GRIPALV-GTNLTGFVAGVATAF--ASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
.+.++....+.++..++.++.|+++||+ |||.... ....+..++.+.... ..+.+...+..++.|.+........
T Consensus 289 ~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 368 (452)
T PRK11273 289 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLI 368 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHH
Confidence 4566777788888899999999999999 5554322 222222232222222 2344444445555555433333334
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHH-HHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhh
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAA-SLLPWIAYYVA---NWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~ 144 (237)
..+..|.+|++.||++.++ .+....+|. ..+|.+.+.+. +|+..|++.++..++..+...
T Consensus 369 ~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 369 GLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHcChhhhhhHHHH-HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999 554445554 44666655543 688888776666555544433
No 150
>PRK15075 citrate-proton symporter; Provisional
Probab=98.96 E-value=1.3e-08 Score=85.79 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=78.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHH-HH---hhccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA-TA---FASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~---~~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
..+.++......++..++.++.|+++||+|||+.+..+.++..+.... .. ..++........++.+++.+...+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (434)
T PRK15075 273 AADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAM 352 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhH
Confidence 345667777888889999999999999999999887765444332211 11 12333334444455566666666667
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
..++.|.+|++.|+++.++.++.+..++..++|.+.+.+
T Consensus 353 ~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 353 VVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 788999999999999988855655555455566665543
No 151
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.94 E-value=8.5e-09 Score=85.78 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=101.5
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
...+...+...+...++.+..+++.||+|||+.+.++.++.++........++.+.+++..++.|++.+........+..
T Consensus 254 ~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 254 RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777888889999999999999999999988888887777777888888888899999887766666677788
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAV 140 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 140 (237)
+..+++.+++..+...+....+|..+++.+.+.+. +|+..|.+.++..++..
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888775555345566777777776666553 67788887666654443
No 152
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.91 E-value=2.9e-08 Score=82.53 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=71.8
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhccccccc-chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFG-RIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
++.|+|.+.+...+..+++.+++|.++||.+ +|+.+.+..++.++........++++.+++..++..++.....|...+
T Consensus 35 s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds 114 (400)
T PF03825_consen 35 SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDS 114 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4678999999999999999999999999985 566777777777777777777888888888888888877778888888
Q ss_pred hhhhhcCC
Q psy2966 86 LVLEYVGP 93 (237)
Q Consensus 86 ~~~e~~~~ 93 (237)
+..+...+
T Consensus 115 i~~~~~~~ 122 (400)
T PF03825_consen 115 IALSYLGD 122 (400)
T ss_pred HHHHHccc
Confidence 88877654
No 153
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.90 E-value=4e-08 Score=81.40 Aligned_cols=115 Identities=6% Similarity=-0.030 Sum_probs=93.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+...+...++..+..++.+++.||+|+|+.+..+.++.++..+..+..++.+.+++..++.|++.+...+....++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 318 (382)
T PRK11128 239 ASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYI 318 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888999999999999999999999998888887788888999888999999999888888888888
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
.+. +++++++..+.........|..++|.+++.+.
T Consensus 319 ~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 319 AAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 55567887777333555667677777777663
No 154
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.89 E-value=3.4e-08 Score=84.54 Aligned_cols=141 Identities=11% Similarity=0.164 Sum_probs=97.1
Q ss_pred CchhhHHH-HHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHH---Hhh-ccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQ-AIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVAT---AFA-STFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
..+.++.. ....++.+++.+++|+++||+|+|+.+.++.++.++..+.. +.. ++.+.+....++..++.+...+.
T Consensus 257 ~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~ 336 (491)
T PRK11010 257 AGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAA 336 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667766 45567889999999999999999987776665555443322 232 34444454556655555656677
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
..++..+..+++.+++..++ .+....+|..+++.+.+.+ .||+..|.+..+..+.+.+...+++++
T Consensus 337 ~~a~~~~l~~~~~~~t~~gl-~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 337 FVALLMTLCNKSFSATQFAL-LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHcCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888999999999998888 5656677766555555443 278888888877777776666555544
No 155
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.87 E-value=3.9e-08 Score=81.73 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=107.9
Q ss_pred cCCCchhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhhccchhhh
Q psy2966 5 CAQDTLPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFA--STFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
-++ .++.-+.+.+.--.-+..+++|+++||+ |+|+++..+.++..++-++.+.. .+...+++...+.+++.|..-+
T Consensus 58 ~~~-~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~ 136 (498)
T COG3104 58 FDE-THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKP 136 (498)
T ss_pred cCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccc
Confidence 453 3344444444444447788999999998 99999999999999999998887 4778889999999999999999
Q ss_pred HHhhhhhhhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhccc
Q psy2966 82 MMYILVLEYVGPSWR--TFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVP 147 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r--~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~p 147 (237)
...+.+.|.+|++.. -.++++ +.++.++|++++|++...+. +|...|...++-....++...+.+
T Consensus 137 NiS~llg~ly~~~DprrD~gFt~-fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 137 NISSLLGELYPKDDPRRDGGFTL-FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cHHHHHHHhcCCCCcccCCCccE-EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999988643 335555 56777888888888887775 677777777766666655554443
No 156
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.87 E-value=2.9e-08 Score=93.21 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLE 89 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 89 (237)
+.+++.+...++.++++++.|++.||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...+...+++.+
T Consensus 270 ~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 349 (1146)
T PRK08633 270 QVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQF 349 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 67888899999999999999999999999998888888888888887777788888888899999999888889999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 90 YVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 90 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
..|++.||+++++ .+....+|.++++.++..+
T Consensus 350 ~~p~~~rg~~~~~-~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 350 RAPEKELGKVLAA-NNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred cCCccchhhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 6666666666555555443
No 157
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.86 E-value=4.7e-08 Score=75.58 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=99.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhhccchhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-------STFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~ 80 (237)
+.|...+.+.-.+|..+| ++.|.+.|++|+|.++.++.+...++......+ .+.|.+.+..++.|.+.+...
T Consensus 36 q~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ 114 (250)
T PF06813_consen 36 QSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFN 114 (250)
T ss_pred HHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhh
Confidence 567788888888998775 889999999999999999999999988776652 356777777777777766556
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANW--QYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
........+.||. +||++.++..+.....+.++..+......+- ...+.....+.++.++..++++..|
T Consensus 115 ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 115 TASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred hHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 6666667788975 6999999965655555666666666665532 2233333344555555556665443
No 158
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.85 E-value=1e-07 Score=81.25 Aligned_cols=112 Identities=9% Similarity=0.091 Sum_probs=78.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-----ASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+...++..+...++.+++.+++++++||+|+|+.+.++.++..++.+...+ .++.+.+++.-++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667677888899999999999999999998887766655544332 345566667778888888888899
Q ss_pred HhhhhhhhcCC-----chh--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 83 MYILVLEYVGP-----SWR--TFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 83 ~~~~~~e~~~~-----~~r--~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
..++++|..+. .+| |...+. .....-+|..+++.+.+
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~-~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSV-QTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999663 233 445555 44444455555544443
No 159
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.84 E-value=9.2e-08 Score=78.92 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=85.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-----STFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+.+.++..+...++..++.++.|++.||+|||+.+..+..+..++....... .+...+....++.|++.+...+.
T Consensus 241 ~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (385)
T TIGR00710 241 PSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSI 320 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999999999999888877777766555442 23344555567788888888888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA 119 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~ 119 (237)
...+..|..| ++|+++.++.......+|.+.++.++
T Consensus 321 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 321 AMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888886 57899988844455566777777766
No 160
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.84 E-value=5.2e-08 Score=82.16 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=85.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc--cc-hHHHHHHHHHHHHH--HHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF--GR-IPALVGTNLTGFVA--GVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Gr-r~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
..+.+...+.+.++..++.++.|+++||+ ++ |.......+...+. .+......+........+..|++.......
T Consensus 278 ~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 357 (434)
T PRK11663 278 LVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQML 357 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHH
Confidence 45667788888999999999999999999 33 33222211111111 111111223333333444455433333334
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~ 143 (237)
...+..|.+|++.|+++.++ .+....+|..++|.+.+.+. +|+..|+..+++.++..+..
T Consensus 358 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 358 IGMAAAECSHKEAAGAATGF-VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHhcccHhhHHhHHHH-HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999 67777888888877766653 68888887777765554433
No 161
>PRK09848 glucuronide transporter; Provisional
Probab=98.81 E-value=2.8e-07 Score=78.03 Aligned_cols=106 Identities=9% Similarity=0.060 Sum_probs=80.9
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhccchhhhHHhhhhhhhcC
Q psy2966 15 QAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS--TFWQFAICRFFVGLAFDNCFTMMYILVLEYVG 92 (237)
Q Consensus 15 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~ 92 (237)
.....++..++.++.+++.||+|+|+.+.++.++..++.+...+.+ +.+.+.+..++.|++.+...+...+..+|..|
T Consensus 270 ~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~ 349 (448)
T PRK09848 270 LVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVE 349 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334566778899999999999999999999888888777666643 56666677788899999899999999999987
Q ss_pred Cch-------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2966 93 PSW-------RTFVANMSIAIFFTLAASLLPWIAYY 121 (237)
Q Consensus 93 ~~~-------r~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (237)
.++ +|...++ .+....+|..+++.+.+.
T Consensus 350 ~~~~~~g~r~~G~~~~~-~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 350 YGEYLTGVRIEGLTYSL-FSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred hhHHhhCccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 653 4777777 666666776666555443
No 162
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.80 E-value=4.3e-08 Score=82.09 Aligned_cols=127 Identities=9% Similarity=0.022 Sum_probs=81.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA-LVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.+...+...++..++.++.|+++||++||+. .....++.+++..+.....+....+..-++.+++.....+.....
T Consensus 278 ~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (412)
T TIGR02332 278 NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTT 357 (412)
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence 4567778888999999999999999999997774 333333444333222223332222222222233333334445566
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHH
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLP 135 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~ 135 (237)
..|.+|+++|+++.++ .+....+|.+++|.+.+.. ++|...+.+.++.
T Consensus 358 ~~~~~~~~~~~~a~g~-~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 358 PDQSISLQARAIAIAV-INATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred cccccchHHHHHHHHH-HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 6788999999999999 6777778888888776554 2577776655443
No 163
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.80 E-value=7.8e-10 Score=95.01 Aligned_cols=141 Identities=14% Similarity=0.200 Sum_probs=2.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh------------c---------------
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA------------S--------------- 60 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------------~--------------- 60 (237)
..+.|++.+.+-++..+..++..++++|..|-+.+-++.++.+++.++.++- .
T Consensus 37 S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~ 116 (539)
T PF03137_consen 37 SSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDS 116 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccc
Confidence 3478999999999999999999999999777778889999999998887750 0
Q ss_pred -----------------------cHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2966 61 -----------------------TFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPW 117 (237)
Q Consensus 61 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 117 (237)
-+..++++.++.|+|....++...+|+-|..+++.-+...|+ ......+|+.+|.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi-~~~~~~lGPa~Gf~ 195 (539)
T PF03137_consen 117 SSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI-LYAMSILGPALGFL 195 (539)
T ss_dssp -----------------------------------SSS------------------------------------------
T ss_pred cccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh-hhHHhhccHHHHHH
Confidence 024467778999999999999999999999999999988888 66677777777766
Q ss_pred HHHhcc-------------------------chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 118 IAYYVA-------------------------NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 118 ~~~~~~-------------------------~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
+++... .|+.-|++.+...++..+.+++.|+.
T Consensus 196 lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 196 LGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 665431 25555556666666666666666665
No 164
>KOG2504|consensus
Probab=98.80 E-value=2.5e-08 Score=85.14 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=122.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccccc--chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFG--RIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+.+.+...++..+...++.++.|+++|+.. ++....++.++.+++.....+.++++.+...-.+.|++.|........
T Consensus 332 ~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 332 SNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999988 555777888888888888999999999999999999999988888888
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhccc
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVP 147 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~p 147 (237)
.+.|..+.++-+.+.|+ .....+++.+++|.+.+.+. +|...|...++..+.+...++..|
T Consensus 412 i~~~~~g~~~l~~a~Gl-~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 412 ILVDLVGLEKLSNAYGL-LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHcChhhcchHHHH-HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999 78899999999998888663 588889998888888877777766
No 165
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.80 E-value=5.1e-08 Score=83.10 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=94.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF----ASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
..+.++......++..++.++.|++.||+|||+.+..+.++.+++.....+ ..+.+......++.|++.+...+..
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 369 (485)
T TIGR00711 290 ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPL 369 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888999999999999999999999999998888888777662 2345666667788999888877777
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.....+..|+++|+++.++ .+....+|..+++.+.+.+
T Consensus 370 ~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 370 TTIALSGLPPHKIARGSSL-SNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHhcCCHHHHhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999 7777888888887766654
No 166
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.79 E-value=7.3e-08 Score=80.41 Aligned_cols=115 Identities=10% Similarity=-0.079 Sum_probs=87.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccc-cccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVAD-HFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
+.+.++..+...++...+..+.+.+.| |++.|+.+..+.++.+++.+..++.++.+.+.+..++.+++.+...+...++
T Consensus 242 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~ 321 (400)
T PRK11646 242 PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETL 321 (400)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 345566666666655555555555555 5676777777777777777777777877777777778888877778888899
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
+.|..|+++|++..++ .+....+|..++|.+.+.+.
T Consensus 322 ~~~~~p~~~~g~~~g~-~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 322 SASLADARARGSYMGF-SRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred HHhcCCcccchhhhhH-HHHHHHHHHHhcccchHHHH
Confidence 9999999999999998 78888888888887777663
No 167
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.78 E-value=1.7e-07 Score=77.76 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=90.7
Q ss_pred CchhhHHHHHHH-HhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHHHHhhccchhh
Q psy2966 8 DTLPTLAQAIFF-CGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF------ASTFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~g~~~~~~~ 80 (237)
+.+.++...... .+..++.++.|++.||+|+|+.+..+.++.++..+.... ..+...+.....+.+++.+...
T Consensus 242 ~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 321 (390)
T TIGR02718 242 LEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS 321 (390)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 456666666654 466778899999999999999988776655333222211 1233334444455566677777
Q ss_pred hHHhhhhhhhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHH
Q psy2966 81 TMMYILVLEYVGP-SWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAV 140 (237)
Q Consensus 81 ~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 140 (237)
+.......+..++ +.+++..++ .+....+|..++|.+++.+. +|+..|...+++.+.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 322 VAIYTAFMRFAGDGDQAGTDVTA-VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHhCcccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 8888887788776 888999998 67777888888888877664 56677777666555543
No 168
>PRK10054 putative transporter; Provisional
Probab=98.76 E-value=7.4e-08 Score=80.22 Aligned_cols=124 Identities=12% Similarity=0.058 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-STFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
..+...+...+......++.|.+.||.++|+.+..+..+..++.....+. ++.+.+.+...+.|++.+...|....++.
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 324 (395)
T PRK10054 245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLID 324 (395)
T ss_pred HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455555556666667788999999999999988888777777666654 56666777788889988877888888999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHH
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLP 135 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~ 135 (237)
+..|++.|++..+. .+ ...+|..++|.+++.+. +....+++.+..
T Consensus 325 ~~~p~~~~~~~~~~-~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~ 372 (395)
T PRK10054 325 HIAPPGMKASYFSA-QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALA 372 (395)
T ss_pred HhCCcccceehHhH-HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence 99999999988775 33 34467777777776664 334445444433
No 169
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.76 E-value=1.5e-07 Score=77.62 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=83.2
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccch---HHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRI---PALV-GTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+...+...+...++ .++++||.+|| +... ...++.++......+..+.....++-++.+++....++..+++.
T Consensus 229 ~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 305 (368)
T TIGR00903 229 GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWI 305 (368)
T ss_pred HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444444444444 57778877543 3322 23344444444444444444555566677777777788888999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV-ANWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
+|.+|++.|+++.++ .+....++++.+|.+.... .+....|.+.+++.++..+...+++++
T Consensus 306 ~~~~p~~~rgt~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 367 (368)
T TIGR00903 306 GKFCDKELHGKAAGA-IGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPND 367 (368)
T ss_pred HHhcchhhcCcccch-hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 5666666776666665443 366666776666665555554444543
No 170
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.75 E-value=3e-07 Score=76.20 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=86.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhhccchhhhHHh-h
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-ASTFWQFAICRFFVGLAFDNCFTMMY-I 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~-~ 85 (237)
+.+.++..+...++..++.++.|++.||+|+|+.+..+..+.+++.+.... .++.+...+..++.+++.....+... .
T Consensus 234 ~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (382)
T PRK10091 234 ETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQIL 313 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456788889999999999999999999999999988888777777655443 44555555555566655443343333 3
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHh
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~ 143 (237)
...+..+++.++.+.+ .....+|..++|.+.+.+ .+|+..+...++..+..+...
T Consensus 314 ~~~~~~~~~~~~~~~~---~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 314 LLQNAKGGELLGAAGG---QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHhCCcchHHHHHHH---HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 3444455555555432 334556666666666543 368888877666555544333
No 171
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.74 E-value=2.2e-07 Score=77.31 Aligned_cols=113 Identities=12% Similarity=-0.056 Sum_probs=87.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+...++..++++..+++.||.++|+.+..+. +.++......+.++.+...+..++.|++.+...+...+.+
T Consensus 240 ~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~ 318 (393)
T PRK11195 240 LNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALL 318 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 567888999999999999999999999999998887775 3444444455566777667777788998888778788888
Q ss_pred hhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 88 LEYVGPSW-RTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 88 ~e~~~~~~-r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.|..|++. +|++.++ .+....++..++..+....
T Consensus 319 q~~~~~~~~~g~~~a~-~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 319 QHRGHVLVGAGHSIAV-QNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HhhCcccccchhHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 88766655 7888888 6777777777776665544
No 172
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.73 E-value=2.7e-07 Score=76.14 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=77.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH---h-hccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA---F-ASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
+.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+... . ..+.+...++..+.+.+.+......
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (377)
T PRK11102 229 PQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNA 308 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45678888888899999999999999999999998887765444333222 1 2234444444444444444445555
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
..++.|..| +.|+++.++.......+|..+++.++....
T Consensus 309 ~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~ 347 (377)
T PRK11102 309 MAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAPF 347 (377)
T ss_pred HHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 566777766 789998888555556778888877765443
No 173
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.73 E-value=5.1e-07 Score=71.22 Aligned_cols=126 Identities=22% Similarity=0.308 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST--FWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..++..+...++..++.++.|.++||+|||+.+..+.....++.+...+..+ .+.+.+.|+..|++.+...+...+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 119 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5688889999999999999999999999998888877655555566666655 88899999999999998999999999
Q ss_pred hhhcCC-chhHHHHHHHHHH-HHHHHHHHHHHHHHhcc-----chHHHHHHHHHHH
Q psy2966 88 LEYVGP-SWRTFVANMSIAI-FFTLAASLLPWIAYYVA-----NWQYLCVITSLPL 136 (237)
Q Consensus 88 ~e~~~~-~~r~~~~~~~~~~-~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~ 136 (237)
.|+.|+ +.|+...+. ... ....|..+++.++.... +|+..+.......
T Consensus 120 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 120 SEWFPEATERGLAVGL-VTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHhcCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999998 678877776 343 45566666665554432 6887555544443
No 174
>KOG0254|consensus
Probab=98.73 E-value=3e-07 Score=79.20 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=89.0
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhcc-------------HHHHHHHHHHHhhccch
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST-------------FWQFAICRFFVGLAFDN 78 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~l~g~~~~~ 78 (237)
.+...+..+...++..++..+.||+|||+.++.+...+.++.++.+.... ...+....+....+..+
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 44555666667778888899999999999999999999999887775211 11122222223333334
Q ss_pred hhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHH-HHHHHHHHH-HHhhccccC
Q psy2966 79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVAN--WQYLCVI-TSLPLLVAV-ITPWIVPES 149 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~--w~~~~~~-~~~~~~~~~-~~~~~~pe~ 149 (237)
..++.+.+.+|.+|.+.|+++.+++....+.....+.......... +...|.. .++..+... ...+++||+
T Consensus 412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 5566678899999999999999886666666555554332222222 2333433 444444444 567788999
No 175
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.73 E-value=8.7e-08 Score=82.16 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=94.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF---ASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
..+.++......++..++.++.|++.||+|+|+.+..+.++..++.+.... .++.+......++.|++.+...+...
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~ 373 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAST 373 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 567788888888999999999999999999999988888877777655443 24555666778899999998888888
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
....+..|+++++.+.++ .+....+|..+++.+.+.+
T Consensus 374 ~~~~~~~~~~~~g~~~~~-~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 374 SAIMAAAPPEKAAAAGAI-ETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHhcCCHHhcchHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998 7888888888887766655
No 176
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.73 E-value=5.6e-08 Score=79.65 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred CchhhHHHHHHH-HhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHhhc
Q psy2966 8 DTLPTLAQAIFF-CGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-----------STFWQFAICRFFVGLA 75 (237)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~ 75 (237)
..+.+....... ++..++.+++|++.||+|||+.+..+.++.++......+. ++.+.+..+.++.+++
T Consensus 243 ~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (356)
T TIGR00901 243 KEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVT 322 (356)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 345555555444 5678999999999999999999888888777766554432 3456677778888999
Q ss_pred cchhhhHHhhhhhhhcCCchhHHHHHH
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTFVANM 102 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~~~~~ 102 (237)
.+...+...+++.|.+|+++||+..++
T Consensus 323 ~~~~~~~~~~~~~~~~p~~~~g~~~g~ 349 (356)
T TIGR00901 323 GGLGTVAFVAFLSKLSNPKFGATQMAL 349 (356)
T ss_pred hHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 999999999999999999999999988
No 177
>PRK11462 putative transporter; Provisional
Probab=98.72 E-value=7.6e-07 Score=75.69 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=75.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc----ccchH-HHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHhhcc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH----FGRIP-ALVGTNLTGFVAGVATAFAST------FWQFAICRFFVGLAF 76 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~ 76 (237)
...+|.+..+.-+.-++..|+.|.++|| +|||+ .++++.+..+++.+++...++ ...+.+..++..++.
T Consensus 44 ~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~ 123 (460)
T PRK11462 44 AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLY 123 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4456666777777778999999999995 68765 556676777777666554432 334555556667777
Q ss_pred chhhhHHhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHHH
Q psy2966 77 DNCFTMMYILVLEYVG-PSWRTFVANMSIAIFFTLAASLL 115 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~ 115 (237)
.....+..++.+|+.+ +++|++..+. -..+..+|..++
T Consensus 124 t~~~ipy~al~~~lt~d~~eRt~l~s~-r~~~~~iG~~~~ 162 (460)
T PRK11462 124 TVVNIPYCALGGVITNDPTQRISLQSW-RFVLATAGGMLS 162 (460)
T ss_pred HHHhccHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHH
Confidence 7777888889999977 7889888887 555555554444
No 178
>PRK09669 putative symporter YagG; Provisional
Probab=98.72 E-value=4.2e-07 Score=76.91 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF--ASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.......+..+++.+++++++||+|+|+.+..+.++..+......+ .++.+.+++..++.|++.+...+..++++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777888899999999999999998887766654433322 35666777778899999999999999999
Q ss_pred hhhcCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2966 88 LEYVGPSW-------RTFVANMSIAIFFTLAASLLPWIAYY 121 (237)
Q Consensus 88 ~e~~~~~~-------r~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (237)
+|..+.++ .|...+. ......+|..+++.+.+.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~-~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFST-NLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99986332 2444555 444555555555555443
No 179
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.71 E-value=8.1e-08 Score=81.08 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=81.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHH---HHHHHHHh--hccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGF---VAGVATAF--ASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
..+.++......++..++.++.|+++||+++++....+..... ++.+.... ..+.+......+..|++.......
T Consensus 286 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 365 (438)
T TIGR00712 286 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVML 365 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHH
Confidence 4556778888888999999999999999965432222222111 11111111 223343334445555433222223
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHhcc---chHHHHHHHHHHHHHH-HHHhhccccC
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLA-ASLLPWIAYYVA---NWQYLCVITSLPLLVA-VITPWIVPES 149 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g-~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pe~ 149 (237)
......|.+|++.|+++.++ .+.....+ ..++|.+.+.+. +|...+.+..+..++. +...+++||.
T Consensus 366 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 366 IGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHhcChhheeeehhh-hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33467799999999999998 44443443 456666665542 5777776655544333 3444556665
No 180
>PRK09848 glucuronide transporter; Provisional
Probab=98.71 E-value=9.5e-07 Score=74.80 Aligned_cols=114 Identities=13% Similarity=0.036 Sum_probs=71.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc----cchHHH-HHHHHHHHHHHHHHH-hh----c--cHHHHHHHHHHHhhc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF----GRIPAL-VGTNLTGFVAGVATA-FA----S--TFWQFAICRFFVGLA 75 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~-~~----~--~~~~~~~~~~l~g~~ 75 (237)
..+.|.+.+...+..++..++.|.++||. |||+.. +++.+...+...... .. . .....++...+.+++
T Consensus 43 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (448)
T PRK09848 43 AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLC 122 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999996 777644 555554444443322 11 1 122234445566766
Q ss_pred cchhhhHHhhhhhhhcCC-chhHHHHHHHHHH-----HHHHHHHHHHHHHHhc
Q psy2966 76 FDNCFTMMYILVLEYVGP-SWRTFVANMSIAI-----FFTLAASLLPWIAYYV 122 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~-----~~~~g~~~~~~~~~~~ 122 (237)
.+...+...++..|.... ++|.+..+. -.. +..++..++|.+....
T Consensus 123 ~~~~~~~~~al~~~~~~~~~~r~~~~~~-r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 123 YSLVNIPYGSLATAMTQQPQSRARLGAA-RGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHhcccHhhhhhhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666676667777776544 668776554 222 2335555666666543
No 181
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.69 E-value=5.5e-07 Score=72.38 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=92.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+++.+...-+...++...+.|.++||+|||+.-+..+++.+++++. -..++++.++++|++.|++....+...-++.
T Consensus 68 ~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~ 146 (354)
T PF05631_consen 68 EHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWM 146 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888899999999999999999988888888888864 3457899999999999998887777766643
Q ss_pred -hhh----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHh-hccccC
Q psy2966 88 -LEY----VGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-----NWQYLCVITSLPLLVAVITP-WIVPES 149 (237)
Q Consensus 88 -~e~----~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~-~~~pe~ 149 (237)
.|. +|++..+...+.+......+-.+.+.+++.... +-..+|.....+.++..+.. ...+|.
T Consensus 147 V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 147 VHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 444 344444444443111222333344444444432 22456777666555544333 344554
No 182
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.68 E-value=3.6e-07 Score=76.25 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=84.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-----STFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+.+.++......++..++.++.+++.||+|+|+.+..+.++..++.+..... .+.+.+.+..++.|++.+...+.
T Consensus 250 ~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~ 329 (406)
T PRK15402 250 SYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAG 329 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666666777888999999999999999999888877776666555432 34556667778888888876666
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
....... .++++|++..+. .+....++..+++.+.+.+
T Consensus 330 ~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 330 LYRLTLF-SSDVSKGTVSAA-MGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHhh-hccccccHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 6555543 345889999998 7777778888888887766
No 183
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.67 E-value=3.4e-07 Score=76.39 Aligned_cols=134 Identities=12% Similarity=0.178 Sum_probs=84.8
Q ss_pred CchhhHHHHHH-HHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHH---Hhh-ccHHHHHHHH----HHHhhccch
Q psy2966 8 DTLPTLAQAIF-FCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVAT---AFA-STFWQFAICR----FFVGLAFDN 78 (237)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~----~l~g~~~~~ 78 (237)
..+.++..... .++..++.++.|++.||+|||+.+..+.++..+..+.. ++. ++.+.+.+.- +..|++.+.
T Consensus 244 ~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 323 (402)
T PRK11902 244 AGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAA 323 (402)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665444 34678999999999999999998877766655554332 333 4555555444 345566666
Q ss_pred hhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q psy2966 79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 143 (237)
..+....++.+.+|.+.++...+. ...+...++.++..+.... ||+..|...+++.+.+++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~G~l~~~~-G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 324 FVALLMALCNRSFSATQYALLSAL-ASVGRVYVGPTSGYLVEAY-GWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH
Confidence 778888888888887776654433 2333333333333333333 78888888877776665554
No 184
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1e-06 Score=72.30 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-STFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+....++....+.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.+...+.-++.|+...........
T Consensus 245 s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~ 323 (394)
T COG2814 245 SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQT 323 (394)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45678999999999999999999999999 99998888877777777666654 55566666677788777766666666
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhc
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWI 145 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~ 145 (237)
..++ ..++.+..+.++ +....++|..+|..+++.. .++....++.++..+......+.
T Consensus 324 ~~a~-~~p~~~~~a~sl-~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 324 RLAR-LAPDAADLAGSL-NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred Hhcc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 6666 446778888888 6666666666666666554 36777777777776666555443
No 185
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.66 E-value=1.7e-07 Score=88.04 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=91.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh--------------------ccHHHHHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA--------------------STFWQFAI 67 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~ 67 (237)
..+.+++.+.+.++.++|+++.|++.|+.++++.+..+.++.+++.+...+. .+.+.+++
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence 5678889999999999999999999998887776665555555555444332 56677778
Q ss_pred HHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 68 CRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 68 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
..++.|++.+...+...+++.+..|++.||+++++ .++...++..+++++.+.+
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~-~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAA-NNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHH-HHHHHHHHHHHHHHHHHHH
Confidence 88899999998899999999999999999999998 6777777777777666555
No 186
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1e-07 Score=77.69 Aligned_cols=134 Identities=20% Similarity=0.263 Sum_probs=98.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc--cchHHHHH-HHHHHHHHHHHHHhh--ccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF--GRIPALVG-TNLTGFVAGVATAFA--STFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
...+++..+.+=++.++|.+++|+++||+ |||....+ ..++..++.+..-.+ .|++...++.+..|+..-+..-.
T Consensus 287 ~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmL 366 (448)
T COG2271 287 LVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQML 366 (448)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHH
Confidence 56778889999999999999999999998 77765443 333333333333334 35688888889999887777777
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHH-HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTL-AASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT 142 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~-g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~ 142 (237)
......|..|++--|++.|+ .+.+..+ |..++....+.. .+|...|++..+.++++.+.
T Consensus 367 iGl~a~e~~pK~AaGtA~Gf-~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 367 IGLAAAEFVPKKAAGTATGF-VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HHHHHhccccHhhccchhch-hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 88888999999999999999 6655555 777776555554 27888888766665554433
No 187
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.65 E-value=3e-07 Score=75.97 Aligned_cols=141 Identities=11% Similarity=0.182 Sum_probs=110.0
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
...|...+...+.-++.-.+..++.+|+|.|+.++++..+.++=...++++++.+.+.+.+.+.|+..+.......-|++
T Consensus 259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~ 338 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYIT 338 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHH-HHHHHhhccccC
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLL-VAVITPWIVPES 149 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~-~~~~~~~~~pe~ 149 (237)
+.+|++..++...+..+....+|..+.+.+.+.+. |.+..+++.+.+.+ ..++..+.++.+
T Consensus 339 ~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 339 AHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999998888887667777777777666666553 56666666555544 344555556544
No 188
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.65 E-value=7.7e-07 Score=76.42 Aligned_cols=109 Identities=11% Similarity=-0.024 Sum_probs=87.0
Q ss_pred hhHHHHHHHHhhhhhhhhh----hcccccccchHHHHHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHhhccc
Q psy2966 11 PTLAQAIFFCGAIVGGLVF----GWVADHFGRIPALVGTNLTGFVAGVATAFAST---------FWQFAICRFFVGLAFD 77 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~l~g~~~~ 77 (237)
.++..+...+...+..++. +++.||++.+..+.++.++.+++.+..+...+ .+.+....++.|++..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4555666665555555554 77788888888899999999999888766543 4578888999999999
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
...|...+++.+..|++.||+.+|+ +.+...+|+.++..+..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~-~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGS-WFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 77777777777766654
No 189
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.65 E-value=2e-07 Score=76.74 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=99.1
Q ss_pred hhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHH
Q psy2966 21 GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVA 100 (237)
Q Consensus 21 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~ 100 (237)
.+...-++...+.|.+|.|++++.+.+...+...+..+.++...+-+..++.|++.+ ...+.++|+-...|+++-.++.
T Consensus 53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vt 131 (412)
T PF01770_consen 53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVT 131 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHH
Confidence 445666778899999999999999999999999999999999999999999999777 5788889999999999888888
Q ss_pred HHHHHHHH----HHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhccccChHH
Q psy2966 101 NMSIAIFF----TLAASLLPWIAYYV-ANWQYLCVITSLPLLVAVITPWIVPESARW 152 (237)
Q Consensus 101 ~~~~~~~~----~~g~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~ 152 (237)
+. ..... .+++++|.++...- .++.....+......++++..+++|..++.
T Consensus 132 s~-~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 132 SY-TRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRS 187 (412)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 77 33344 44444554444422 255666666556566666777788887653
No 190
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.64 E-value=2.3e-07 Score=75.44 Aligned_cols=107 Identities=24% Similarity=0.373 Sum_probs=89.1
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA---STFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
.+.+...+...++..++.++.|++.||+|+|+..........+..+..... ++....+...++.|++.+...+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 322 (352)
T PF07690_consen 243 SQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFS 322 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888999999999999999888777777766666665543 34566667788899999989999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLP 116 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~ 116 (237)
++.|..|+++|+++.++ .+....+|..++|
T Consensus 323 ~~~~~~~~~~~g~~~g~-~~~~~~~~~~igP 352 (352)
T PF07690_consen 323 LIQELVPPEYRGTAFGL-FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCCCHTCHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH-HHHHHHHHHHHCC
Confidence 99999999999999999 7788888888876
No 191
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.63 E-value=1.1e-06 Score=73.25 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH----HHHHhhccchhhhHHh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-STFWQFAIC----RFFVGLAFDNCFTMMY 84 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~----~~l~g~~~~~~~~~~~ 84 (237)
..+...+...++-++.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+. ..+.|+..+.......
T Consensus 244 ~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 244 TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34445555566667888889999999999999999999988888887776 555444333 3468999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHH-HHHHhhccccC
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---------NWQYLCVITSLPLLV-AVITPWIVPES 149 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~pe~ 149 (237)
.|+.+..|++.|+++.++...+..++|..++..+++.+. .|...+.+.++..++ .++.+++.+|+
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999998555667788888877777653 244455554444333 33334444544
No 192
>KOG0252|consensus
Probab=98.60 E-value=9.8e-08 Score=78.56 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=94.0
Q ss_pred HHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhcc----HHHHHHH----HHHHhhccchhhhHHhhhhhhh
Q psy2966 19 FCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST----FWQFAIC----RFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 19 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~----~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
..+++.|..+...+.|++|||+..+.+.+++.+..++.+...| ...++++ .++..+|- ......+.+|.
T Consensus 358 ~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~ 434 (538)
T KOG0252|consen 358 VCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEI 434 (538)
T ss_pred HHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhh
Confidence 3455668888999999999999999999999999999888655 1122222 33333433 34556678999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 91 VGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--------NWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 91 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
+|.+.|++..++ .+...-.|++++...-.... +.+..+++.+.+.+...+..+++||+.
T Consensus 435 FParvR~t~hGI-sAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 435 FPARVRSTCHGI-SAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred chHHHhhhhhhH-HHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 999999999999 45555556666544433331 568889988888888888889999984
No 193
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.59 E-value=4.3e-07 Score=76.42 Aligned_cols=114 Identities=17% Similarity=0.310 Sum_probs=92.3
Q ss_pred CCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhccchhhhHH
Q psy2966 6 AQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS--TFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
.++...+....+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.+++..++.|++.+..++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~ 336 (428)
T PF13347_consen 257 GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIP 336 (428)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccc
Confidence 3345677888889999999999999999999999999999999999998888875 89999999999999999999999
Q ss_pred hhhhhhhcCCch-------hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSW-------RTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 84 ~~~~~e~~~~~~-------r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
+++++|..+.++ .|...++ .....-++..+++.+.+
T Consensus 337 ~a~~ad~id~~e~~tg~r~~g~~~s~-~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 337 WAMLADVIDYDEWKTGRRREGMYFSV-NSFFIKIGQGLAGAIVG 379 (428)
T ss_pred ccccccchhhHHHhcCCCchHHHHHh-hhhhhHHHHHHHHHHHH
Confidence 999999987542 3555665 55555555555544433
No 194
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.59 E-value=8.7e-07 Score=73.61 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=75.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.+...+...++..++.++.+++.||+|||+.+..+.++..++.+...+.++.+.......+.+.+.+...+. ...
T Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~ 315 (392)
T PRK10473 238 RGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMS 315 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHH
Confidence 345677778888899999999999999999999999998888888777776655544444444444433333322 233
Q ss_pred hhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 88 LEYVGPSWR-TFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 88 ~e~~~~~~r-~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.+..|.++| +.+.++ ..++..+|+.+++.+....
T Consensus 316 ~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~l~~~~ 350 (392)
T PRK10473 316 QALGPFSLRAGVASST-LGIAQVCGSSLWIWLAAVL 350 (392)
T ss_pred HHhccCcccccHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 455565555 344444 5666677777777666655
No 195
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.58 E-value=1.8e-06 Score=71.90 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=85.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.+.......++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.+...+....++
T Consensus 251 ~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 330 (394)
T PRK10213 251 VDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWI 330 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34567778888899999999999999996544434333333333334444556677777788899998888888888888
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPL 136 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~ 136 (237)
.+..|+ ++++..+. ......+|..+++.+++.+. +++..++..+...
T Consensus 331 ~~~~~~-~~~~~~~~-~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 331 TRSLAD-QAEKAGSI-QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHCcc-cHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 888874 45566555 44455666677776666653 5566666655443
No 196
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.57 E-value=8.4e-07 Score=71.50 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=85.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++..+.+..+.++|.++.+++.||+|+|+.+.++.++..++.++....++.... ..-++.|++.+..+|...+..
T Consensus 177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a 255 (310)
T TIGR01272 177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLA 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999998888887777776655555544333 355688999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.+..|++ .+.+.++ .. ...+|..+.|.+.+.+
T Consensus 256 ~~~~~~~-~~~asai-~~-~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 256 LNALGRH-TSQGSGI-LC-LAIVGGAIVPLLQGSL 287 (310)
T ss_pred Hhhhhhh-hhhhHHH-HH-HHHhcchHHHHHHHHH
Confidence 8888765 4455566 43 4457778888766655
No 197
>PRK11462 putative transporter; Provisional
Probab=98.56 E-value=2.7e-06 Score=72.31 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=57.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS--TFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+...+...+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+ +...+.+.-++.|++.+...+..++
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777888889999999999999999987755554444333333322 2333444556677777766777777
Q ss_pred hhhhhcC
Q psy2966 86 LVLEYVG 92 (237)
Q Consensus 86 ~~~e~~~ 92 (237)
+++|..+
T Consensus 342 m~ad~~d 348 (460)
T PRK11462 342 MMSDTVD 348 (460)
T ss_pred HHHHhHh
Confidence 8887766
No 198
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.56 E-value=2.3e-07 Score=76.05 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=77.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccccc-chHHHH-HHHHH-HHHHHHHHHh--hccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFG-RIPALV-GTNLT-GFVAGVATAF--ASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~-~~~~~-~~i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
..+.++..+...++..++.++.|++.||.+ ||+... ..... ..++...... ..+.....+..++.|+......+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (379)
T TIGR00881 251 KEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQML 330 (379)
T ss_pred HHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHH
Confidence 456788888889999999999999999863 333222 21111 1122122222 234455556667777766556666
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
...+..|..|++.|+++.++ .+....+|..++|.+.+.+
T Consensus 331 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l 369 (379)
T TIGR00881 331 IGVIASELAPKKAAGTAAGF-VGFFAYLGGILAGLPLGYL 369 (379)
T ss_pred HHHHHHHhcCcchhHHHHHH-HHHhhhhhhhhhhhhHHHH
Confidence 77889999999999999999 6777778888887776665
No 199
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.54 E-value=6.8e-07 Score=76.00 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=87.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHH--------HHHHHHH--HHHHHHHHHh-hccHHHHHHHHHHHhhcc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA--------LVGTNLT--GFVAGVATAF-ASTFWQFAICRFFVGLAF 76 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~--------~~~~~~~--~~i~~~~~~~-~~~~~~~~~~~~l~g~~~ 76 (237)
..+.++..++..++..++.++.|+++||+++|+. +..+... .++..+.... ..+....+++..+.+.+.
T Consensus 296 ~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (465)
T TIGR00894 296 GKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS 375 (465)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 4577888889999999999999999999865421 1111111 1111111222 234444444455555555
Q ss_pred chhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHhhccc
Q psy2966 77 DNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA------NWQYLCVITSLPLLVAVITPWIVP 147 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~p 147 (237)
+...+.......|..|+ .+|...++ .+....+++.++|.+.+.+. +|...|.+.++..++..+...+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~-~~g~~~g~-~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 376 SGPLAGVLINSLDLAPR-FLGFIKGI-TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred hhhhhhhhhchhhcChh-HHHHHHHH-HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 54555555555676665 78999999 77788889999988877542 377788877777666655555443
No 200
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.53 E-value=1e-06 Score=72.22 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=80.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.+...+...++.++++++.|++.||+ +||+.+..+.++.+++.+...+..+..... ...+.|++.+..++.....
T Consensus 231 ~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~ 309 (355)
T TIGR00896 231 AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTL 309 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHH
Confidence 45678888999999999999999999999 566677777777777766666554433222 3467888888888887777
Q ss_pred hhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 87 VLEYVG-PSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 87 ~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
..+..+ +++++...++ .+....++..++|.+.+.+
T Consensus 310 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 310 IGLRSRQAAQAAALSAM-AQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHhccCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 665554 5566777777 4555556666777666554
No 201
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.53 E-value=1.5e-05 Score=67.96 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHH-HHHHHHHHHHHHhh--ccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGT-NLTGFVAGVATAFA--STFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++....+. ++++...++.++..++.+.......++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888899999999999999888766554 44444455555553 345555555566667888889999999
Q ss_pred hhhhcCCchh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhc----c-------chHHHH
Q psy2966 87 VLEYVGPSWR--------------------------TFVANMSIAIFFTLAASLLPWIAYYV----A-------NWQYLC 129 (237)
Q Consensus 87 ~~e~~~~~~r--------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~----~-------~w~~~~ 129 (237)
+.|+.+++.+ ++..+..++.++. |+++.-.+.... . +.|..+
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~-G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYI-GGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHH-HHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 9999999998 8888775554443 333332222221 1 236666
Q ss_pred HHHHHH-HHHHHHHhhccccChH
Q psy2966 130 VITSLP-LLVAVITPWIVPESAR 151 (237)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~pe~p~ 151 (237)
.+.++- .++.....+++||.|+
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Confidence 665554 4555566667788754
No 202
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.50 E-value=1.7e-09 Score=91.42 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=81.9
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH--h---hcc----HHHHHHHHHHHhhc-cchhhhHHhhh
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA--F---AST----FWQFAICRFFVGLA-FDNCFTMMYIL 86 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~---~~~----~~~~~~~~~l~g~~-~~~~~~~~~~~ 86 (237)
...+...++.+++..+.||+|||+.++.+.++.+++.+..+ . .++ ....++.-.+...+ ..+..+..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 34455567777788999999999999999888888777664 1 121 11112222222222 22345667788
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhccccC
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pe~ 149 (237)
..|.+|.+.|+++.+++... ..++.++.+.+..... .+....+..+...+..++.++++|||
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~-~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAV-GRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 99999999999999985443 3455555554433322 23333344444455555677789999
No 203
>KOG3626|consensus
Probab=98.50 E-value=3.4e-07 Score=80.00 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=114.7
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh--------------------c---------
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA--------------------S--------- 60 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------------------~--------- 60 (237)
+.|++.+.+-++..+...+..+.+-|.-|-+.+-++.++++++.++.++- +
T Consensus 133 ~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~ 212 (735)
T KOG3626|consen 133 QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCC 212 (735)
T ss_pred cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhc
Confidence 57888899999999999999999999888889999999999999888750 0
Q ss_pred ------------------c----HH-HHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2966 61 ------------------T----FW-QFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPW 117 (237)
Q Consensus 61 ------------------~----~~-~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~ 117 (237)
+ .+ .++++.++.|+|....++...+|+-|...+++-+...++ ......+|+++|.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi-~~~~~~lGPaiGfl 291 (735)
T KOG3626|consen 213 NKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGI-LYSMAILGPAIGFL 291 (735)
T ss_pred cCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHH-HHHHHHhhhHHHHH
Confidence 0 22 456678999999999999999999999999999999998 66777888888877
Q ss_pred HHHhcc----------------------chHHHHHHHHHHHHHHHHHhhccccCh
Q psy2966 118 IAYYVA----------------------NWQYLCVITSLPLLVAVITPWIVPESA 150 (237)
Q Consensus 118 ~~~~~~----------------------~w~~~~~~~~~~~~~~~~~~~~~pe~p 150 (237)
++++.. .|+.=|++.+.+.++..+.+++.|...
T Consensus 292 lgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 292 LGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 776541 366667778888888888888887663
No 204
>KOG2563|consensus
Probab=98.49 E-value=7.3e-06 Score=67.63 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=84.6
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh------ccHH--HHHHHHHHHhhccchhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA------STFW--QFAICRFFVGLAFDNCF 80 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~--~~~~~~~l~g~~~~~~~ 80 (237)
...-|.+.++.+.+.+..+++.|+.||+|-|...+++..+.+++..+-..+ +.++ ....+..+.+.+.....
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 345688888999999999999999999999999999999999998886653 2334 56667777777666555
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSI---AIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~---~~~~~~g~~~~~~~~~~~ 122 (237)
..-.-...-|+|+++|+.+..++. .++..+|.++.|++....
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 554566778899999999887732 244555555555554443
No 205
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.48 E-value=6.8e-06 Score=68.89 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS--TFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
....+.......+.+++.++...+++|+|+|+++.++.++..++.+...+.+ +.+.+++..++.+++.+...+..+++
T Consensus 272 l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam 351 (467)
T COG2211 272 LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAM 351 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHH
Confidence 4444556666667777799999999999999999999999999999888864 67888888899999999999999999
Q ss_pred hhhhcCC
Q psy2966 87 VLEYVGP 93 (237)
Q Consensus 87 ~~e~~~~ 93 (237)
++|..+.
T Consensus 352 ~~d~vDy 358 (467)
T COG2211 352 VADTVDY 358 (467)
T ss_pred hcchhhH
Confidence 9988654
No 206
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.48 E-value=2.4e-06 Score=72.10 Aligned_cols=118 Identities=8% Similarity=-0.063 Sum_probs=74.6
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-h-----ccHHHHHHHHHHHhhccchhhhHHhhhhhhh
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-A-----STFWQFAICRFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
+..+...+..+++|+++||+|+|+++.++.++..+....... . .+++...+..+...++.|......+.++.+.
T Consensus 294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~ 373 (462)
T PRK15034 294 FGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVI 373 (462)
T ss_pred HHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHH
Confidence 345667788899999999999999999888877776543222 1 2455555554444455555555666677777
Q ss_pred cCC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHH
Q psy2966 91 VGP---------------------SWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLP 135 (237)
Q Consensus 91 ~~~---------------------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~ 135 (237)
+|+ ++-|...|+ .+....+|+++.|.+.+.. +++...++...+.
T Consensus 374 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~-v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~ 442 (462)
T PRK15034 374 FRQITIYRVKMKGGSDEQAQREAVTETAAALGF-ISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIF 442 (462)
T ss_pred HhhhhhhcccccccchhHHhhHHHHHHHHHHHH-HHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHH
Confidence 764 134556666 5666677777777553332 3565555554444
No 207
>PRK10133 L-fucose transporter; Provisional
Probab=98.48 E-value=1.8e-06 Score=72.93 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=81.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
+.+.++....+.++..+|.++.+++.||+|||+++..+.++..+...+..+.++.. .+....+.|++.+..+|...+..
T Consensus 294 ~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~s~a 372 (438)
T PRK10133 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFSLG 372 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999998888777766665555555532 34556788999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.|..|++ .+.+.++ ..... +|..++|.+.+.+
T Consensus 373 ~~~~~~~-~~~as~l-~~~~~-~g~~~~~~i~G~l 404 (438)
T PRK10133 373 IKNLGQD-TKYGSSF-IVMTI-IGGGIVTPVMGFV 404 (438)
T ss_pred Hcccchh-hccchhH-HhHHh-ccchHHHHHHHHH
Confidence 9998764 4556665 33332 4444554444443
No 208
>KOG2816|consensus
Probab=98.48 E-value=1.6e-06 Score=73.22 Aligned_cols=127 Identities=17% Similarity=0.311 Sum_probs=93.2
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--cchhhhHHhhhhhhhcCCc
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLA--FDNCFTMMYILVLEYVGPS 94 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~e~~~~~ 94 (237)
...+...+.++..|.++||+|||..+....+...+..+...+.. +|.+. +.++. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 33567788999999999999999999999888888777776655 33332 33432 3446778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHH-HHHhhccccC
Q psy2966 95 WRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVA-VITPWIVPES 149 (237)
Q Consensus 95 ~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pe~ 149 (237)
.|....++ .......+..++|.+++... +.-.++.+..+..+.. ....+++||+
T Consensus 145 ~R~~~~gl-l~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 145 ERSSSIGL-LSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred HHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999 67667777777777777664 4445666666555554 3456678888
No 209
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.5e-06 Score=70.91 Aligned_cols=134 Identities=12% Similarity=0.070 Sum_probs=93.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhhccchhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA-------STFWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~ 80 (237)
+...+.....+.+...+..+.+|+++||+|.++++.+....++++..+.... .+....+...+..+++.|...
T Consensus 253 ~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~Gn 332 (417)
T COG2223 253 PVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGN 332 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCc
Confidence 5566788888888999999999999999999999999888888888777764 334444444444444444444
Q ss_pred hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHh
Q psy2966 81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITP 143 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~ 143 (237)
...+.++...+|+ +-|...++ .+...++|.+..|...+.. +++...|++.....+.+.+..
T Consensus 333 Gsvfk~Ip~if~~-~~G~v~G~-vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 333 GSVFKMIPVIFPK-ETGAVTGI-VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred chheeechHHHHh-hhhHHHHH-HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 5566667777755 46677777 6777778877766655443 257777777666655555443
No 210
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.43 E-value=3.1e-06 Score=68.25 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=69.6
Q ss_pred hhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Q psy2966 58 FASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-------------- 123 (237)
Q Consensus 58 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------- 123 (237)
..++++.+++..++.|.|.+..++..+.|+++..|++++++..++ .+..+.+|.+++|++...+-
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~-~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLAL-TQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHH-HHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 346788999999999999999999999999999999999999999 78889999999999887432
Q ss_pred -----chHHHHHHHHHHHHHHHHHhhc
Q psy2966 124 -----NWQYLCVITSLPLLVAVITPWI 145 (237)
Q Consensus 124 -----~w~~~~~~~~~~~~~~~~~~~~ 145 (237)
.|+++++..+.+.++..+.+.+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777555543333333333
No 211
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.42 E-value=6.1e-06 Score=70.50 Aligned_cols=128 Identities=12% Similarity=-0.026 Sum_probs=96.0
Q ss_pred hhHHHHHHHHhhhhhhhhhh----ccccc-ccchHHH--HHHHHHHHHHHHHHHh---------hccHHHHHHHHHHHhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFG----WVADH-FGRIPAL--VGTNLTGFVAGVATAF---------ASTFWQFAICRFFVGL 74 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g----~l~dr-~Grr~~~--~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~l~g~ 74 (237)
.++..+...+..++.+++.. ++.|| .+++... .++.++.+++....++ ..+++.+++..++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 55677777777777777755 44444 2333433 6778888777777664 4688999999999999
Q ss_pred ccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHH
Q psy2966 75 AFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA 139 (237)
Q Consensus 75 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~ 139 (237)
+.....|...++++|..|++.||+..++ +.....+|..+++.+.... .+|...+...++..++.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGM-WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLV 460 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999 7888888888887776644 25666666655544433
No 212
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.41 E-value=1.3e-06 Score=74.46 Aligned_cols=140 Identities=13% Similarity=0.083 Sum_probs=102.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh----------hccHHHHHHHHHHHhhccc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF----------ASTFWQFAICRFFVGLAFD 77 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~l~g~~~~ 77 (237)
+...|.......++.+++....+.+.+|++.|+++.++.++.+++...... .++.+.+...-++.+++.+
T Consensus 287 ~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g 366 (468)
T TIGR00788 287 PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ 366 (468)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence 677888888888999999999999999999999999999888887755431 1233344555677888888
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHH---HHHHHHHHHHHHHhhcc
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--------NWQYLC---VITSLPLLVAVITPWIV 146 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~w~~~~---~~~~~~~~~~~~~~~~~ 146 (237)
..+.+...++.+..|++.+++..++ .....++|..+++.+++.+. +++..+ ++..+..++.....+++
T Consensus 367 ~~~~~~~~~~~~~~p~~~egt~~al-~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~ll 445 (468)
T TIGR00788 367 LKFMPFLVLLARLCPSGCESSVFAL-LASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLL 445 (468)
T ss_pred HHHccHHHHHHHhCCCCceehHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 8888889999999999999999998 66666777777777666552 122222 22333444444555577
Q ss_pred cc
Q psy2966 147 PE 148 (237)
Q Consensus 147 pe 148 (237)
|+
T Consensus 446 P~ 447 (468)
T TIGR00788 446 PR 447 (468)
T ss_pred CC
Confidence 86
No 213
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.37 E-value=5.5e-06 Score=68.60 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=51.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHH--HHHHH-Hh----hccHH-HHHHHHHHHhhccchh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFV--AGVAT-AF----ASTFW-QFAICRFFVGLAFDNC 79 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i--~~~~~-~~----~~~~~-~~~~~~~l~g~~~~~~ 79 (237)
..+.|.+.++..+...+.+++.|.++||+|.||-++.......+ +.+.. .+ ..|.+ ..+++-...|+...+.
T Consensus 42 ~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~ 121 (412)
T PF01306_consen 42 GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAG 121 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 67889999999999999999999999999977766544332221 22111 11 12332 2333334445555555
Q ss_pred hhHHhhhhhhhc
Q psy2966 80 FTMMYILVLEYV 91 (237)
Q Consensus 80 ~~~~~~~~~e~~ 91 (237)
.|+..+|..+..
T Consensus 122 ~~~~Ea~~er~s 133 (412)
T PF01306_consen 122 VPLSEAYAERVS 133 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 666665555443
No 214
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.36 E-value=3e-05 Score=65.12 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=88.9
Q ss_pred chhhHHHHHHHHhhhhhhhhhhccccc----ccch-HHHHHHHHHHHHHHHHHHhhc------cHHHHHHHHHHHhhccc
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADH----FGRI-PALVGTNLTGFVAGVATAFAS------TFWQFAICRFFVGLAFD 77 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~g~~~~ 77 (237)
..+|.+..+.=+--++..|+.|.++|| +||| +.++++.+..++...++..++ +....++...+.+++..
T Consensus 48 ~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT 127 (467)
T COG2211 48 ALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYT 127 (467)
T ss_pred HHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHH
Confidence 344444555555667889999999995 5655 577777788888888777655 34556777788888888
Q ss_pred hhhhHHhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHHH-----HHHHHhcc-----chHHHHHHHHHHHHHHH-HHhhc
Q psy2966 78 NCFTMMYILVLEYVG-PSWRTFVANMSIAIFFTLAASLL-----PWIAYYVA-----NWQYLCVITSLPLLVAV-ITPWI 145 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~w~~~~~~~~~~~~~~~-~~~~~ 145 (237)
....+..++.+|+.+ +++|.+..+. -..+..+|.++. |++..... +|+....+.+++.++.. .+++-
T Consensus 128 ~vniPy~al~~~iT~d~~ER~~l~s~-R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~ 206 (467)
T COG2211 128 LVNIPYGALGPEITQDPQERASLTSW-RMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFN 206 (467)
T ss_pred heeCchhhcchhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888854 5778777776 454555554333 33333322 45555555555544433 33333
Q ss_pred cccC
Q psy2966 146 VPES 149 (237)
Q Consensus 146 ~pe~ 149 (237)
.+|.
T Consensus 207 v~ER 210 (467)
T COG2211 207 VKER 210 (467)
T ss_pred hhcc
Confidence 4554
No 215
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.35 E-value=2.8e-05 Score=68.58 Aligned_cols=132 Identities=10% Similarity=0.064 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHHhhccchhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFAST--------FWQFAICRFFVGLAFDNCF 80 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~ 80 (237)
.+..+...+....-+..+++|.++|++ ||++.++++.++..++..+.++... ....+++..+..+|.|+.-
T Consensus 24 ~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiK 103 (654)
T TIGR00926 24 TSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIK 103 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccc
Confidence 334444444445557778899999965 9999999999998888877766321 2235566777888899999
Q ss_pred hHHhhhhhhhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHHH
Q psy2966 81 TMMYILVLEYVGPSW---RTFVANMSIAIFFTLAASLLPWIAYYVA----------NWQYLCVITSLPLLVAVIT 142 (237)
Q Consensus 81 ~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~ 142 (237)
+...+...|-+++++ |-..+.+ +..+.++|+++++.+...+. +|...|.+.++..+++++.
T Consensus 104 p~vsaf~gdqf~~~~~~~~~s~F~~-fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 104 PCVSAFGGDQFEERQLSLRSRFFSF-FYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cCchhhhHhhcCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999988654 4455666 55677788887766665543 4777777766665555444
No 216
>KOG4686|consensus
Probab=98.34 E-value=2.2e-06 Score=66.83 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=93.8
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
..++-+.+..+.-.++.+++.|.++||+|++...+.+..+..+..-... .-+.+.-++...+.|+.....-...+..++
T Consensus 300 ~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l-~Ft~lsPy~~m~~lGLsysllAcslWP~va 378 (459)
T KOG4686|consen 300 VSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL-FFTFLSPYTSMTFLGLSYSLLACSLWPCVA 378 (459)
T ss_pred hhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH-HhhhccHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 3455566666777788899999999999999977776555544432221 122333455667788866655556788899
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----ch---HHHHHHHHHHHHHHHHHhhcc
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NW---QYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w---~~~~~~~~~~~~~~~~~~~~~ 146 (237)
.+.|+++-|++.+. .+...++|-.+.|++.+.+. ++ ...|+..+...+..+...+.+
T Consensus 379 ~~vpE~qLGTaygf-~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 379 SLVPEEQLGTAYGF-IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhCCHHHhcchHHH-HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 99999999999999 67788999999999988873 22 234444555555555444444
No 217
>PRK11043 putative transporter; Provisional
Probab=98.34 E-value=2.1e-05 Score=65.57 Aligned_cols=113 Identities=12% Similarity=-0.047 Sum_probs=77.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA---F--ASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
..+.++......++..++.+..+++.||+|+|+.+....++.+++.+... . .++.+...+...+.|++.+..++.
T Consensus 237 ~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (401)
T PRK11043 237 PADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPI 316 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667778888999999999999999876555544444433221 1 345555556667778888888888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
......|..| ++|+++.++ .+.....+...++.+.+.+
T Consensus 317 ~~~~~~~~~~-~~~g~~~g~-~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 317 VVAQALRPFP-QATGKAAAL-QNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHhhhCc-ccChHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 8888777776 579999999 5655555555665555554
No 218
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.33 E-value=1.1e-05 Score=58.00 Aligned_cols=104 Identities=12% Similarity=0.039 Sum_probs=82.7
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhc
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYV 91 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 91 (237)
....++.+....+++++.+.+.+++|.|+.++++.+...+.... .+.++.+.++..-.+.|++.+..++....++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 34466777778899999999999999999999998888755444 34567788899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2966 92 GPSWRTFVANMSIAIFFTLAASLLPW 117 (237)
Q Consensus 92 ~~~~r~~~~~~~~~~~~~~g~~~~~~ 117 (237)
+++.|++..++.+.+ ...+.++|.+
T Consensus 119 ~~~~~~~~~~ifw~i-~~~s~i~G~~ 143 (156)
T PF05978_consen 119 TEETIGRNTGIFWAI-FQSSLIFGNL 143 (156)
T ss_pred CHHHHhhHHHHHHHH-HHHHHHHHHH
Confidence 999999988873332 2334444433
No 219
>KOG0255|consensus
Probab=98.30 E-value=7.7e-06 Score=70.68 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=97.1
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHH---HHHHHHHHHhhccchhhhHHhhhhhhh
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFW---QFAICRFFVGLAFDNCFTMMYILVLEY 90 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~e~ 90 (237)
..+........+....+...|++|||.....+..+..++.++.++..+.. ...+...+..++.+..+...+.+.+|.
T Consensus 355 ~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 434 (521)
T KOG0255|consen 355 NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAEL 434 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445556666667899999999999999999999998888865332 355555566666677777789999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccchH-H-HHHHHH-HHHHHHHHHhhccccCh
Q psy2966 91 VGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQ-Y-LCVITS-LPLLVAVITPWIVPESA 150 (237)
Q Consensus 91 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~-~-~~~~~~-~~~~~~~~~~~~~pe~p 150 (237)
+|+..|..+.+. ......+|.+++|.+......+. . .+...+ ...+...+..+++||+.
T Consensus 435 ~pt~~r~~~~~~-~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 435 IPTVVRNTAVGA-ISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 999999999999 67788889999988876543221 1 222223 33444445558899984
No 220
>KOG3762|consensus
Probab=98.28 E-value=1.6e-06 Score=72.80 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=106.7
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
...|........+-++.-++.+++.+|+|+-+++..++.+..+=.+..+...|.|..+...++.|+..+..+...-+|++
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777888888999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHH
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI 141 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 141 (237)
...|++.|.++.++......++|--+|.++++... +-+..|...++.+++.++
T Consensus 486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 99999999999888555666666666666666553 345556655555444433
No 221
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.27 E-value=1.4e-05 Score=68.59 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=84.5
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchHH-------HHHHHHHHHHHHHHHH-----h-----hccHHHHHHHHHHHhh
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPA-------LVGTNLTGFVAGVATA-----F-----ASTFWQFAICRFFVGL 74 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~~-----~-----~~~~~~~~~~~~l~g~ 74 (237)
.+..+...+..++.+++.+.+.||+|+|+. +.++.++.+++.+..+ + ..+.+.+....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 445555667777888999999999999963 6667676666654321 1 1356777788899999
Q ss_pred ccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 75 AFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 75 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
+.+...+....++.+..|++.++.++++ +.....+|..++..++.
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~-~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGM-WFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 77777788887776664
No 222
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.22 E-value=1.8e-05 Score=66.40 Aligned_cols=107 Identities=11% Similarity=0.191 Sum_probs=80.8
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhc
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYV 91 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 91 (237)
+...+.+..+..+|.++++++.||+++|+++.++.++..+..++..+.++... .....+.|++.+..+|..++...+..
T Consensus 272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~ 350 (410)
T TIGR00885 272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGL 350 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33455556778899999999999999999998888888888887777766544 55667888888889999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 92 GPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 92 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+++.+.....+ .++ .+|..+.|.+.+.+
T Consensus 351 g~~~~~~s~~l--~~~-~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 351 GQDTKYGAAGL--VMA-IIGGGIVPPLQGFI 378 (410)
T ss_pred hhhhhhhHHHH--HHH-HhccchHHHHHHHH
Confidence 88765444444 222 36777776666555
No 223
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.21 E-value=3e-05 Score=64.47 Aligned_cols=114 Identities=7% Similarity=0.013 Sum_probs=79.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHH-HHHHHHHh--hccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGF-VAGVATAF--ASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~-i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
..+.++......++..+++++.+++.||++++........+.. +....... ..+.+.+....++.|++.+...+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (394)
T PRK11652 242 SMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLAT 321 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888888888899998884433322222111 22111111 23556677778888998888899999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
.+..|..| ++++...++ .+....+|..+++.+.+...
T Consensus 322 ~~~~~~~~-~~~g~~~~~-~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 322 SGAMEPFP-YLAGTAGAL-LGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHhhcc-ccchHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence 99999887 568888888 67777888888888877664
No 224
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.18 E-value=7.2e-05 Score=61.36 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHhhhhhhhhhhccccccc-----chHHHHHH-HHHHHHHHHHHHh-----hc-------cHH----HHHH
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFG-----RIPALVGT-NLTGFVAGVATAF-----AS-------TFW----QFAI 67 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~-~~~~~i~~~~~~~-----~~-------~~~----~~~~ 67 (237)
..+...+...+.. +..+.+|+.+|+.+ ||..+++. ......+..++.+ .. +.+ ...+
T Consensus 16 lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l 94 (403)
T PF03209_consen 16 LVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAAL 94 (403)
T ss_pred HHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHH
Confidence 3444445555444 56888999999999 88766654 4444444444333 12 222 2344
Q ss_pred HHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 68 CRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 68 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
...+.|++.+.......++..|..|+++|++..++.+ ....+|.+++..+.+.+
T Consensus 95 ~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw-~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 95 AFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVW-VMLIVGIIVSAIVFGRL 148 (403)
T ss_pred HHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999944 44556666665555543
No 225
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.11 E-value=7.4e-06 Score=67.17 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=68.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh--hc--cHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF--AS--TFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~--~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
+.+.++..+...++..++.++.|+++||+|||+.+..+......+.....+ .+ +.+...+...+.+++.|...+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 339 (366)
T TIGR00886 260 KVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGST 339 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchh
Confidence 456777888888899999999999999999998777776665555544443 22 45544444455555555556667
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIF 107 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~ 107 (237)
.+.+.|..| +++|...|+ .+..
T Consensus 340 ~~~~~~~~~-~~~g~~~g~-~~~~ 361 (366)
T TIGR00886 340 FALVPHIFR-RATGAVSGL-VGAI 361 (366)
T ss_pred hhcchhhch-hhcccHHHH-HHHh
Confidence 777888886 578888887 4433
No 226
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.06 E-value=0.00017 Score=58.31 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=93.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..+.|+..+...+.....++....+++|. ++|+..+....++.++.+.+.+.+....+.- -++.|++.|..++.....
T Consensus 242 a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~l 320 (395)
T COG2807 242 AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTL 320 (395)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHH
Confidence 56788999999999999999999999966 7788888888888888777766553322222 489999999999999998
Q ss_pred hhhhcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHH
Q psy2966 87 VLEYVGPSWRT-FVANMSIAIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVI 141 (237)
Q Consensus 87 ~~e~~~~~~r~-~~~~~~~~~~~~~g~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~ 141 (237)
+.+-.+..+.. .-.++ .+....+-..++|++.+.+ ++|....+......+...+
T Consensus 321 i~~rs~~a~~Aa~LSgm-aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 321 ILLRSSDAAIAAALSGM-AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHhhcCChHHHHHHHHH-hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 88877665543 33444 3333333344566666655 5898877766655544433
No 227
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.99 E-value=0.00012 Score=62.29 Aligned_cols=137 Identities=7% Similarity=0.014 Sum_probs=95.6
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccc-hHHHHHHHHHHHHHHHHHHhhcc---------------------HHHHHHHHH
Q psy2966 13 LAQAIFFCGAIVGGLVFGWVADHFGR-IPALVGTNLTGFVAGVATAFAST---------------------FWQFAICRF 70 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~ 70 (237)
+....+.+...+.+++..++.+|+|+ |+...++.++.+++.....+.++ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 33444555556777788889999985 67778888888877776665432 366777888
Q ss_pred HHhhccchhhhHHhhhhhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHh----cc-chHHHHHHHHHHHHHHH-HH
Q psy2966 71 FVGLAFDNCFTMMYILVLEYVGPS--WRTFVANMSIAIFFTLAASLLPWIAYY----VA-NWQYLCVITSLPLLVAV-IT 142 (237)
Q Consensus 71 l~g~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~-~w~~~~~~~~~~~~~~~-~~ 142 (237)
+.|+..+..+.+-++++++..+++ ..|..+|+ .+.+..+..++..+..+. .+ +-...+.+.++..+++. ..
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgi-lN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGV-LNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999964 44888888 777766666655543333 22 33456666666665554 45
Q ss_pred hhccccCh
Q psy2966 143 PWIVPESA 150 (237)
Q Consensus 143 ~~~~pe~p 150 (237)
.+.+|+++
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 55678764
No 228
>KOG3764|consensus
Probab=97.97 E-value=2.1e-05 Score=64.05 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=95.8
Q ss_pred CCCchhhHHHHHHHHhhhhhhhhhhccccccc--chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHH
Q psy2966 6 AQDTLPTLAQAIFFCGAIVGGLVFGWVADHFG--RIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
..+++.++..--..+.+.+++.+.|.++||++ |...-..+++..++......+++++..+++-++..+++.+......
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl 382 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASL 382 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 44567777777778899999999999999999 6555556666666666777788999999988888888777766666
Q ss_pred hhhhhhhcCCch------hHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSW------RTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLV 138 (237)
Q Consensus 84 ~~~~~e~~~~~~------r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~ 138 (237)
.....+..+.++ .|...++ ...++.+|..++|.+++.+. +++|.....++..++
T Consensus 383 ~P~l~~lvd~rh~s~~~vYGsVyaI-ad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 383 IPTLGYLVDPRHVSGFNVYGSVYAI-ADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhhhHHhcchhhccccceeeeHHHH-HHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 666666655543 3455666 56778888899998888764 666655555544433
No 229
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.91 E-value=0.00059 Score=57.96 Aligned_cols=113 Identities=10% Similarity=0.035 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHhhhhh-hhhhhcccccccchHHHHHHHHHHHHHHHHHHhh----c-----------------------
Q psy2966 9 TLPTLAQAIFFCGAIVG-GLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA----S----------------------- 60 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~----------------------- 60 (237)
....++-+...+...+. .++.+++++|++|++.+-+....+.....+.++. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34556666665555555 7889999999999998877766666665555442 1
Q ss_pred ----cHHHHHHHHHHHhhccchhhh-HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 61 ----TFWQFAICRFFVGLAFDNCFT-MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 61 ----~~~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+.|...+......+......+ ..+.+..|.++.++-.|..++ .+.+.++|.++++.+...+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l-~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYAL-FGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 122222333334444444444 788999999999999999999 8899999999988776654
No 230
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.89 E-value=0.00023 Score=60.16 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=84.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccccc-----chHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhccch
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFG-----RIPALVGTNLTGFVAGVATAFA----STFWQFAICRFFVGLAFDN 78 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~ 78 (237)
+.+.....+...+.- ...++.|.++|-+- ||+-++++.++..++.+..+.. .+.....+..++..++...
T Consensus 24 ~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~ 102 (433)
T PF03092_consen 24 PAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAF 102 (433)
T ss_pred HHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 344444555555444 45688999999872 4445555666555555544442 3456666667778888888
Q ss_pred hhhHHhhhhhhhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhcccc
Q psy2966 79 CFTMMYILVLEYVGPSW--RTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPE 148 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe 148 (237)
...+..+...|...++- ||...+. ......+|.+++..+++... +++..|.+.+.+..+..+. .++.+|
T Consensus 103 ~DV~aDa~vvE~~~~~p~~~g~lqS~-~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 103 ADVAADALVVELARREPESRGDLQSF-VWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHhhhHHHHHHhhcCCchhHHHHHH-HHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 89999999999974433 5555555 34455666776666655542 5666666655554444333 344444
No 231
>KOG4686|consensus
Probab=97.88 E-value=1.1e-05 Score=63.05 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAF---ASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
+..++-+++.....+-++++|++.||. |-|..-++-++...++-++.+. .+.+|.+..+|++.|++.-..-+..+.
T Consensus 80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~ 159 (459)
T KOG4686|consen 80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK 159 (459)
T ss_pred eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc
Confidence 566777888889999999999999965 8777555555555566666554 578999999999999988777788889
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHH
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASL 114 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~ 114 (237)
|..-|+..|+-+..+|+ ......+|+..
T Consensus 160 yav~wFKGKELn~vfGl-qlSvAR~Gstv 187 (459)
T KOG4686|consen 160 YAVYWFKGKELNFVFGL-QLSVARLGSTV 187 (459)
T ss_pred eeEEEecCccccchhhH-HHHHHHhhcee
Confidence 99999999999888888 44344444443
No 232
>KOG2532|consensus
Probab=97.87 E-value=4.3e-05 Score=64.86 Aligned_cols=136 Identities=18% Similarity=0.130 Sum_probs=88.9
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccc---------hHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHH-Hhhc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGR---------IPALVGTNLTGFVAGVATAFAST--FWQFAICRFF-VGLA 75 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l-~g~~ 75 (237)
-.+.|+.+++..+...+..+++|.++||.-+ |..-.++....+++.+..++.++ .+..+++..+ .++
T Consensus 293 v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~- 371 (466)
T KOG2532|consen 293 VRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL- 371 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-
Confidence 4567899999999999999999999998855 33445556666666666666542 2122222211 222
Q ss_pred cchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHhhcc
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA------NWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
.|...+..+.-..+. .+++-+..+++ .+....++.+++|.+.+.+. .|+.+|++.+++.++..+.+.+.
T Consensus 372 ~g~~~~Gf~~~~~~~-apq~a~~l~g~-~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 372 SGFNISGFYKNHQDI-APQHAGFVMGI-INFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred cccchhhhHhhhhhc-cchHHHHHHHH-HHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 222222222222222 56667888888 67788888889988877663 69999999888877766554444
No 233
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.82 E-value=0.0012 Score=54.43 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=99.0
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccc-cccchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHhhccchhhhHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVAD-HFGRIPALVGTNLTGFVAGVATAF---ASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
..+.+..+.....|..+|-...|++.. |.++++.-.+++.+..++.....+ ..+.+.+...-++.|++.|......
T Consensus 243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vga 322 (403)
T PF03209_consen 243 VGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGA 322 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHH
Confidence 346677788888888888888887766 778888777777777766655443 4678889999999999999999999
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------chHHHHHHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-------------NWQYLCVITSLPLLVAV 140 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~w~~~~~~~~~~~~~~~ 140 (237)
-+...+..++++.|..+|. ++..+.++..++..+++... +|..+|.+.++..+.+.
T Consensus 323 ls~mM~lt~~~~aG~~mG~-WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~ 391 (403)
T PF03209_consen 323 LSLMMDLTSAGRAGLFMGA-WGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL 391 (403)
T ss_pred HHHHHhCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 77777666666655554431 35556666555544443
No 234
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.80 E-value=0.0005 Score=59.88 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHH-HHHHHHHHHHHHHHHh--hccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPAL-VGTNLTGFVAGVATAF--ASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
..++......++..+|+++.|.+..+++|-|.. +++.+++.++.-.++. .+|....+..-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 467778888889999999999999888766544 4565555544333333 3455556677889999998888887777
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLL 115 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 115 (237)
..-..|++.-+.+.++ ......+|+.++
T Consensus 430 ~ql~~p~~~ig~a~gL-~~s~R~~GGsIg 457 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGL-TGSIRSIGGSIG 457 (599)
T ss_pred eEeeeCchHHHHHHHH-HHHHHHHhhHHH
Confidence 7778898888888887 444444444444
No 235
>KOG3098|consensus
Probab=97.70 E-value=0.00089 Score=56.42 Aligned_cols=92 Identities=15% Similarity=-0.026 Sum_probs=80.0
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCc
Q psy2966 15 QAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPS 94 (237)
Q Consensus 15 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 94 (237)
.++.+....+++++++.+.|+.|.|..+.++............+ .|-+.+++.-.+.|+|.+..+...-.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67788888999999999999999999999999888877766555 45677888999999999988999999999999999
Q ss_pred hhHHHHHHHHHHH
Q psy2966 95 WRTFVANMSIAIF 107 (237)
Q Consensus 95 ~r~~~~~~~~~~~ 107 (237)
.+.+..++.++++
T Consensus 135 tie~Nisi~Wai~ 147 (461)
T KOG3098|consen 135 TIERNISIFWAIG 147 (461)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988866544
No 236
>KOG2533|consensus
Probab=97.67 E-value=0.0001 Score=62.94 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=81.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc----ccchHHHHHHHHHHHHHH-HHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH----FGRIPALVGTNLTGFVAG-VATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+.+.+..++.+.++.+++.+++|+++|| ..+|........+..+.. .......+........+....+.....+.
T Consensus 308 ~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (495)
T KOG2533|consen 308 ELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAII 387 (495)
T ss_pred hHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHH
Confidence 5567788889999999999999999999 777777777666666655 33333333444444444444556667788
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLC 129 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~ 129 (237)
......+....+.|......+...+.+.+...+|.+-.... .|...|
T Consensus 388 ~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 388 ALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred HHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence 88888888877777655544355666666666655443322 455555
No 237
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.64 E-value=0.0014 Score=54.07 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=74.9
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHH-HHHHHHHHHHHHHHhhcc---HHHHHHHHHHHhhccchhhhH
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALV-GTNLTGFVAGVATAFAST---FWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+....+...++..+..++-+|+.|.++|+.|+||..+ ....+..++.....+.++ ++..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3456667778888888899999999999999777554 444444455555555443 444555667788888888999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFF 108 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~ 108 (237)
..+++.+..++++-++..++.++.+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gy 161 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGY 161 (438)
T ss_pred hhhHhhhhcCccccCccccccccccc
Confidence 99999999999888887777555444
No 238
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.00061 Score=55.85 Aligned_cols=113 Identities=15% Similarity=0.238 Sum_probs=87.4
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
++.+.....+.+..+.++|.+++.++..|+...+.+.+..++..+..+..+++++...++. -++.|++.+..+|..++.
T Consensus 270 ~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~-l~~ig~F~simfPTIfsl 348 (422)
T COG0738 270 NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYA-LFLIGLFNSIMFPTIFSL 348 (422)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHH-HHHHHHHhHHHHHHHHHH
Confidence 3567778889999999999999999999999999999988888888888888888655544 478888899999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
..+..| ++-..+.++ .. ...+|+.+.|.+.+...
T Consensus 349 al~~l~-~~ts~~s~~-l~-maivGGAiiP~l~G~i~ 382 (422)
T COG0738 349 ALKNLG-EHTSVGSGL-LV-MAIVGGAIIPPLQGVIA 382 (422)
T ss_pred HHhccC-cccccccee-ee-eheecchHHHHHHHHHH
Confidence 999998 434444433 23 33456666666666653
No 239
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.47 E-value=0.00028 Score=44.90 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=53.3
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHH
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQF 65 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 65 (237)
+..+.+++.+..++|+.+|++....+.++..+++.+..+.+...+....+++.++.+..
T Consensus 25 s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 25 SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 36788999999999999999999999999888999999999999999999998887654
No 240
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.47 E-value=0.0014 Score=54.28 Aligned_cols=132 Identities=8% Similarity=-0.025 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhc
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYV 91 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 91 (237)
+.+.-+..+...+..+.+.++.+|+.-+.-+..+.+++.++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 34555556677777788888999987666666777788889999999999998888999999988877777666544 55
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHH-HHHHHHhhccccC
Q psy2966 92 GPSWRTFVANMSIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPL-LVAVITPWIVPES 149 (237)
Q Consensus 92 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~-~~~~~~~~~~pe~ 149 (237)
++. ..+- +..+.+.++++|+..-..+. +-|..++....+. +..+..++.+|.+
T Consensus 141 ~~~----~l~~-wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 141 GKS----SLSA-WSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred Ccc----cccc-ccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 543 1222 45555555665554433332 3355555544443 3333344445543
No 241
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.38 E-value=0.0044 Score=53.16 Aligned_cols=112 Identities=12% Similarity=-0.028 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccc--h----H-HHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGR--I----P-ALVGTNLTGFVAGVATAFA---------STFWQFAICRFFVG 73 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r----~-~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~g 73 (237)
..++..+...+..++.+++.+++=.|.+| | + =+.+++++.+++.+++.+. .+.+.+++..++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 35677888888888888887777555532 2 1 2567777777777666431 25667888889999
Q ss_pred hccchhhhHHhhhhhhhcCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy2966 74 LAFDNCFTMMYILVLEYVGPSWRTFVANMSIAI-FFTLAASLLPWIAYYV 122 (237)
Q Consensus 74 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~~g~~~~~~~~~~~ 122 (237)
++.-...|+..+.+++..|++.||..+|. +.. ...+|..++..+....
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~-w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGI-YMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99998999999999999999999999999 544 4467777766665544
No 242
>PTZ00207 hypothetical protein; Provisional
Probab=97.35 E-value=0.0059 Score=53.49 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=86.1
Q ss_pred HHHHHHHhhhhhhhhhhccccccc--------chH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFG--------RIP-ALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~G--------rr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
..++..++..+|.+..|.+....- +|+ .+.+..+ +.++.++.++.-....+++.-++.|++.|..+++..
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 677888888888888887762111 222 3333333 556666665553336789999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHhcc-------------c---hHHHHHHHHHHHHHHHHHhh
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLL-PWIAYYVA-------------N---WQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~-~~~~~~~~-------------~---w~~~~~~~~~~~~~~~~~~~ 144 (237)
..++|+|. |+-|+-.++ ......+|+.+- ..+.+... | ++..|++.+..+..+.+...
T Consensus 475 ~i~selFg-k~~g~~yN~-~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNF-CFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHhc-cchHHHhhH-HhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 99999999 888888777 455666666654 33333221 1 56777777776666654433
No 243
>KOG0637|consensus
Probab=97.35 E-value=0.00039 Score=57.77 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=73.4
Q ss_pred HHHhhhhhhhhhhcccc----cccchHHHHHH-HHHHHHHHHHHHhhccH-----------------HHHHHHHHHHhhc
Q psy2966 18 FFCGAIVGGLVFGWVAD----HFGRIPALVGT-NLTGFVAGVATAFASTF-----------------WQFAICRFFVGLA 75 (237)
Q Consensus 18 ~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~~-----------------~~~~~~~~l~g~~ 75 (237)
-.+...+.+++.|..+| |+|||+.++.. .....++.++..++.++ ...+++..+.-++
T Consensus 76 gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A 155 (498)
T KOG0637|consen 76 GPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVA 155 (498)
T ss_pred cccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhh
Confidence 34456678889999999 57888866554 44445555555553322 2233334445556
Q ss_pred cchhhhHHhhhhhhhcCCchhHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTF-VANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
....+...-+++.|....+++.+ +.+. +....++|..++...+.+.+
T Consensus 156 ~n~~qgp~ra~L~Dl~~~d~~~~~Ans~-f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 156 NNTLQGPCRALLADLARGDAKKTRANSV-FSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred hhhhhhhHHHHHHHhccChhhhhccchh-HHHHHHhcceeeeecccccC
Confidence 66778889999999998888887 8887 88888999999888777664
No 244
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.30 E-value=0.0049 Score=51.79 Aligned_cols=112 Identities=9% Similarity=0.075 Sum_probs=59.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccc-ccccchHHHHHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHhhccchhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVA-DHFGRIPALVGTNLTGFVAGVATA-----FASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~-dr~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
..+.++.......+..+++.+.+.+. |+.++|. ......+..++..+.. ..++++..++..++.+++.+...+
T Consensus 253 ~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p 331 (413)
T PRK15403 253 TSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP 331 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH
Confidence 34566666666777778777777765 4444443 2222222222222221 123343456677778888877777
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
......- .-....+|++.++ .+.....+...++...+.+
T Consensus 332 ~~~~~al-~~~~~~~G~a~a~-~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 332 TLFRFTL-FSNNLPKGTVSAS-LNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHh-ccCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6664322 1122236777776 4545444555555555544
No 245
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.23 E-value=0.0052 Score=51.99 Aligned_cols=78 Identities=6% Similarity=-0.047 Sum_probs=40.7
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHH-HHh----h---ccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA-TAF----A---STFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~~----~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
...+...+..+....+..|+..|.-+..++++..+..++ ..+ . ..++..++.-++.|++.+..+.....+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 333444444444555566666533334443322222222 111 1 23556666677888888877777777666
Q ss_pred hhcCCch
Q psy2966 89 EYVGPSW 95 (237)
Q Consensus 89 e~~~~~~ 95 (237)
.+|++.
T Consensus 133 -~fp~~~ 138 (437)
T TIGR00939 133 -VFPSTY 138 (437)
T ss_pred -cCCHHH
Confidence 555543
No 246
>KOG2816|consensus
Probab=97.10 E-value=0.0056 Score=52.08 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=91.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFG-WVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYIL 86 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 86 (237)
+.+.+...+.......++..+.. .+...+|-|+.+..++....+.....++.++.|.++....+.++ .....+...+.
T Consensus 276 ~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~-~~~~~pa~~s~ 354 (463)
T KOG2816|consen 276 KKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL-AGIVFPAIRAF 354 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh-hcchhHHHHhH
Confidence 45666666666666777777765 77888899999999999999999999999999998888877777 55578999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.+-+.+++++|+..++ ......+...++|.+-+..
T Consensus 355 ~s~~v~~~e~g~v~~~-is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 355 ASILVSPEEQGKVFGI-ISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred HHhhcccccccchhhH-HHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999 6777777777776665443
No 247
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.02 E-value=0.00063 Score=42.72 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=36.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLT 48 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 48 (237)
..+.|.+.++..+...++.+++|.++||+|+++.++.....
T Consensus 34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 67899999999999999999999999999999987766544
No 248
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.94 E-value=0.0075 Score=49.94 Aligned_cols=105 Identities=11% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh---c------cHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCch---hHHHHHHHHHHH
Q psy2966 40 PALVGTNLTGFVAGVATAFA---S------TFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSW---RTFVANMSIAIF 107 (237)
Q Consensus 40 ~~~~~~~~~~~i~~~~~~~~---~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~ 107 (237)
++++++.++..++.++..++ . +.+.++++.++.++|.|+.-+...++.+|-++++. |.+.++. +..+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~-fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW-FYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH-HHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH-HHHH
Confidence 45677777777777773332 1 23578888899999999999999999999998873 4456666 7788
Q ss_pred HHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhc
Q psy2966 108 FTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWI 145 (237)
Q Consensus 108 ~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 145 (237)
.++|.++++.+..++. +|.+.|.+.++..+++.+....
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 8999998877666654 7888888877776666554443
No 249
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.78 E-value=0.082 Score=45.43 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=64.2
Q ss_pred hhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh---------ccH----------------------HHHHHHH
Q psy2966 21 GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA---------STF----------------------WQFAICR 69 (237)
Q Consensus 21 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~~~----------------------~~~~~~~ 69 (237)
+..+...+..++.++++|.+++-+....+.....+.++. ++. |...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 334556668899999999998877666666555555541 110 1112222
Q ss_pred HHHhhccchhhh-HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 70 FFVGLAFDNCFT-MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 70 ~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+..-+-.....+ ..+.+..|.++.++-.+..++ .+.+.++|.++++.+....
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl-~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPL-FGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 222222222233 468889999999999999998 7888888888776655444
No 250
>KOG2615|consensus
Probab=96.76 E-value=0.0074 Score=49.43 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=89.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccccc--chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFG--RIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
..++|-..+...+++.+.+....+..||.. -+-.+..+..+..-..+..+..+....+..+..+..+..+...+....
T Consensus 296 s~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~ 375 (451)
T KOG2615|consen 296 SMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTS 375 (451)
T ss_pred hhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHH
Confidence 345566666666777777777777778776 555555555555555555666777777888888888888888888899
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANW 125 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w 125 (237)
++....|.++||...|+ ......++-+++|.+++....|
T Consensus 376 Lv~~~~~~~qrG~~~Gi-~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 376 LVHKYGPQSQRGTLNGI-FRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHhcCCcccchHHHHH-HHHHHHHHHHhhhhhhheeEEE
Confidence 99999999999999999 6777888999999999777666
No 251
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.69 E-value=0.0057 Score=51.76 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=89.5
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh-h---------ccHHHHHHHHHHHhhccc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF-A---------STFWQFAICRFFVGLAFD 77 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~---------~~~~~~~~~~~l~g~~~~ 77 (237)
+...+....+..++..+|..+.....-+..-|+++.++.++.++..+.... . ++.+..+.--++..+..+
T Consensus 254 ~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~ 333 (433)
T PF03092_consen 254 PSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGM 333 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHH
Confidence 344556666667777788887777766777888888777766665544222 1 122222333455555566
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c---hHHHHHHHHHHHHHHHHHhhcc
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--------N---WQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~---w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
..+-+....++|+.|+..-|+.+++ .....++|..++..++..+. . -.+..++..+..++.+....++
T Consensus 334 i~~mP~lvl~a~lcP~G~Egt~yal-l~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lL 412 (433)
T PF03092_consen 334 IAFMPSLVLAARLCPKGSEGTVYAL-LASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLL 412 (433)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHc
Confidence 6677778889999999999999888 66666666666665555542 1 2233444445555556666677
Q ss_pred ccCh
Q psy2966 147 PESA 150 (237)
Q Consensus 147 pe~p 150 (237)
|++.
T Consensus 413 p~~~ 416 (433)
T PF03092_consen 413 PPQK 416 (433)
T ss_pred CCCc
Confidence 7763
No 252
>KOG3098|consensus
Probab=96.67 E-value=0.069 Score=45.30 Aligned_cols=104 Identities=17% Similarity=0.310 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHhhhhhhhhhhccc---ccccchHHHHHHHHHHHHHHHHHHhh------------------ccHHHHHHH
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVA---DHFGRIPALVGTNLTGFVAGVATAFA------------------STFWQFAIC 68 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~~~~~ 68 (237)
..++......+|..++..+.+.+. +++||++.+.++..+..+..++.... ++.....+.
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence 334444455566666777777776 56799999988888877777665541 245677788
Q ss_pred HHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q psy2966 69 RFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLL 115 (237)
Q Consensus 69 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 115 (237)
-++.|++-+......+.++...+ ++.|..+.++ ...-..++..++
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi-~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSL-FKFYQSVASCVA 404 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHH-HHHHHHHHHHHH
Confidence 89999998888999999999999 6668777777 555555555444
No 253
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.58 E-value=0.031 Score=46.53 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHH--HHHHH---HHHHHhhccHHHHHHHHHHHhhccchhhhHH
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNL--TGFVA---GVATAFASTFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~--~~~i~---~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
++..+....+.+|..++.--...+ |+ |+..+.+.+ +..+. ....-+.++.|.+++..+..|+..|..++-.
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 355566777777777665443332 33 332222211 11122 2222246788999999999999999999999
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
+..+.|-.|+++|..+++. ...+...|..++.+++..++
T Consensus 357 F~~I~~~~~~~~REFslg~-vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGA-VSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHhcCCHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998 78888888888877766654
No 254
>KOG3810|consensus
Probab=96.32 E-value=0.023 Score=46.08 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=86.8
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHH
Q psy2966 24 VGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMS 103 (237)
Q Consensus 24 ~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~ 103 (237)
+.-++.=.+.|..--|++++.-.+.......+..+.++.+.+=+.-++.|...+ .....++|+-+..+++++.++++.+
T Consensus 57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~ 135 (433)
T KOG3810|consen 57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYC 135 (433)
T ss_pred HHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHh
Confidence 333344467899999998888777777777778888888888888888888655 5778899999999999999988873
Q ss_pred HHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHhhccccChHHHH
Q psy2966 104 IAIFFTLAASLLPWIAYYVA-----NWQYLCVITSLPLLVAVITPWIVPESARWLV 154 (237)
Q Consensus 104 ~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~ 154 (237)
-.....|-..+..++..+- ++...-.+......++.+..+++|..||...
T Consensus 136 -RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~ 190 (433)
T KOG3810|consen 136 -RAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLY 190 (433)
T ss_pred -HHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhh
Confidence 3333444444433333331 3333333333444555566677888765443
No 255
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=96.06 E-value=0.031 Score=47.53 Aligned_cols=42 Identities=10% Similarity=-0.103 Sum_probs=27.1
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
..++-.+.-.+.+++.++.+..- ...+...|.+++..+-..+
T Consensus 136 DIAVDGWALT~Ls~~n~~~ASTc-qtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 136 DIAVDGWALTMLSPENVGYASTC-QTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred CceeehhhhhhcChhhcchHHHH-HHhHhhhhHHHHHHHHHhh
Confidence 34445556667788888877655 6677777777765544433
No 256
>KOG4332|consensus
Probab=95.92 E-value=0.0079 Score=47.10 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=46.0
Q ss_pred hhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh-hhhhhc
Q psy2966 21 GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI-LVLEYV 91 (237)
Q Consensus 21 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~e~~ 91 (237)
..++...+.|-++||.|||+.-+.-++...++++ .-.++++-.++++|.+.|+.....+...-+ +++|.-
T Consensus 84 SsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 3456667778899999999954443333333222 223567778999999999987776666554 455554
No 257
>PRK03612 spermidine synthase; Provisional
Probab=95.66 E-value=0.36 Score=42.02 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=22.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhccccc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADH 35 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr 35 (237)
....+.+.+++..|..+|+.+++.+.++
T Consensus 49 ~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 49 VTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456778889999999999988887644
No 258
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.56 E-value=0.2 Score=42.69 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccch-------HHHHHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHH
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRI-------PALVGTNLTGFVAGVATAFA----------STFWQFAICRFFV 72 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~l~ 72 (237)
...+.++...+.-++.+++..++-.+.++| .-+-+++.+.+.+.++.... .+.+.++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 456778888888888888887777775444 22344555555554444332 3567888889999
Q ss_pred hhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 73 GLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 73 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
+++.=...|+..++++...|++..+..+++ +-.....|..++..+..
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~-wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAM-WFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHhhceecc
Confidence 999988899999999999999999999998 77777777777766555
No 259
>KOG3574|consensus
Probab=95.22 E-value=0.19 Score=41.55 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=53.3
Q ss_pred hhhhhcccc-----cccchHHHH-HHHHHHHHHHHHHHh-----------hccHHHHHHHHHHHhhccchhhhHHhhhhh
Q psy2966 26 GLVFGWVAD-----HFGRIPALV-GTNLTGFVAGVATAF-----------ASTFWQFAICRFFVGLAFDNCFTMMYILVL 88 (237)
Q Consensus 26 ~~~~g~l~d-----r~Grr~~~~-~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 88 (237)
-+++.++.| |+|||+.-+ -+-.+.+......+. .++...+....++..+..+.-...+-.+.-
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 356888999 999998432 222223333333322 123333333445555655555566666777
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 89 EYVGPSWRTFVANMSIAIFFTLAASLLPWI 118 (237)
Q Consensus 89 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 118 (237)
.+..+++-|.+... ...+...|.+++..+
T Consensus 160 tmLs~e~lgyaST~-q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 160 TMLSRENLGYASTC-QSVGQTAGYFLGNVV 188 (510)
T ss_pred HhcCHhhcCchhHH-HHHHHhhhHHhhcce
Confidence 77788877766655 566666666666443
No 260
>KOG3880|consensus
Probab=95.17 E-value=0.015 Score=46.31 Aligned_cols=130 Identities=11% Similarity=-0.023 Sum_probs=74.4
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccc--cchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhh
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHF--GRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLE 89 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 89 (237)
+.+.-+-.+...+..+.+....||+ |.|. .+..++.+.+.++.+++++.+.-+.+-.+..++.|.......++.+.
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~ 142 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR 142 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence 4445555566667777778888877 5555 44456777888888899999988888888888777554443333332
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HHH-HHHHHHHHHHHHHHhhccccC
Q psy2966 90 YVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANW-----QYL-CVITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 90 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w-----~~~-~~~~~~~~~~~~~~~~~~pe~ 149 (237)
+++..- +- +..+.+.++++|..--..+..| |.. ++...++.+.++..++.++++
T Consensus 143 -Y~~~~i----~~-WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 143 -YPSIVI----AG-WSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred -CCCcee----cc-ccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 222211 11 3334444444444333333332 433 334445555555555555443
No 261
>KOG2563|consensus
Probab=95.01 E-value=0.018 Score=48.12 Aligned_cols=107 Identities=12% Similarity=0.036 Sum_probs=69.3
Q ss_pred chhhHHHHHHHHhhhhhhhhhhccccccc-chHHHHHHHHHHHHHHHHHH-hh---ccHHHHHHHHHHHhhccchhhhHH
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFG-RIPALVGTNLTGFVAGVATA-FA---STFWQFAICRFFVGLAFDNCFTMM 83 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~-~~---~~~~~~~~~~~l~g~~~~~~~~~~ 83 (237)
...|++.....+++++++.++|.++||.. -|..+++......++..... .. ...+.++....+.|.+..+.+|+.
T Consensus 301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig 380 (480)
T KOG2563|consen 301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIG 380 (480)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcc
Confidence 46788899999999999999999999985 45555555555555532221 11 233445566677788777788888
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q psy2966 84 YILVLEYVGPSWRTFVANMSIAIFFTLAASLL 115 (237)
Q Consensus 84 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~ 115 (237)
.-+-.|..-|..-+...|+....++..+..+.
T Consensus 381 ~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~ 412 (480)
T KOG2563|consen 381 FELGVETTYPVAEGTSSGLLNLSGQIFGVILV 412 (480)
T ss_pred eeeeeeeccccCCcccceeEEeehhHHHHHHH
Confidence 88888885555455555552333333333333
No 262
>KOG1237|consensus
Probab=94.46 E-value=0.26 Score=43.32 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhhc----------------------c---HHHH
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFAS----------------------T---FWQF 65 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~----------------------~---~~~~ 65 (237)
.-..+.+.-......+.+++++|-+ ||-+++.++.++..++.++...+. + ...+
T Consensus 76 a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~ 155 (571)
T KOG1237|consen 76 ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVL 155 (571)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHH
Confidence 3344445545556778899999977 999999998888877755544311 1 1245
Q ss_pred HHHHHHHhhccchhhhHHhhhhhhhcC---Cchh-H--HHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHH
Q psy2966 66 AICRFFVGLAFDNCFTMMYILVLEYVG---PSWR-T--FVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPL 136 (237)
Q Consensus 66 ~~~~~l~g~~~~~~~~~~~~~~~e~~~---~~~r-~--~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~ 136 (237)
+....+..+|.|+.-+...++-+|-++ ++++ . ..++. +......|..++..+..+. .+|.+-|.+..+..
T Consensus 156 ~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW-~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~ 234 (571)
T KOG1237|consen 156 YGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW-FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLN 234 (571)
T ss_pred HHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH-HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHH
Confidence 555667778889889999999999998 3222 2 34455 5566677777775555544 27877666555544
Q ss_pred HHHH
Q psy2966 137 LVAV 140 (237)
Q Consensus 137 ~~~~ 140 (237)
.+++
T Consensus 235 ~lai 238 (571)
T KOG1237|consen 235 ALAI 238 (571)
T ss_pred HHHH
Confidence 4443
No 263
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.24 E-value=2.7 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHH
Q psy2966 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGF 50 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 50 (237)
...-.-.+..++.++..|...||..|.+++..+.+..-
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHH
Confidence 33344445667888888999999999998776644433
No 264
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=92.96 E-value=5.5 Score=34.27 Aligned_cols=113 Identities=7% Similarity=0.007 Sum_probs=71.8
Q ss_pred hHHHHHHHH-hhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh---------ccH-------------------
Q psy2966 12 TLAQAIFFC-GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA---------STF------------------- 62 (237)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~~~------------------- 62 (237)
..+-+..-+ +..+..++.+++.+++.|++++-.....+....+++++. +++
T Consensus 64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il 143 (509)
T COG3202 64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL 143 (509)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence 334344444 556777888999999999998877766666666666541 110
Q ss_pred ----HHHHHHHHHHhhccchhhh-HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy2966 63 ----WQFAICRFFVGLAFDNCFT-MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANW 125 (237)
Q Consensus 63 ----~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w 125 (237)
|...+.....-+-...... ..+....|.+..++-.|..++ .+++.+++.+++..+...+..+
T Consensus 144 i~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~l-f~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 144 IVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPL-FGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 2222222222221122222 456677889988888899998 8888888888887777776543
No 265
>KOG3880|consensus
Probab=92.74 E-value=0.75 Score=37.06 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=75.1
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHH-----HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA-----LVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+.|.-|....+.+|..++.-..-. +--+.. +-.-..++.+.-.+..+.++++..++..+.-|+..|..++-
T Consensus 287 ~sqYRwyqvlYQlGVFiSRSS~~~----~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVN 362 (409)
T KOG3880|consen 287 DSQYRWYQVLYQLGVFISRSSINL----FTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVN 362 (409)
T ss_pred hhcchhhheeeeeeEEEEeccceE----EechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHH
Confidence 345667777776665544322221 111211 11222333344444556889999999999999988888888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANW 125 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w 125 (237)
.+--+.+-.++++|..+++. ..++-.+|..++.+++..+.+|
T Consensus 363 Tf~~i~~e~~pd~rEfamsa-vs~sDS~Gi~lA~~lalplh~~ 404 (409)
T KOG3880|consen 363 TFHNIHKETEPDVREFAMSA-VSISDSIGIFLAGLLALPLHNW 404 (409)
T ss_pred HHHHHhhcCCchHHHHhHhh-heecchhhHHHHHHHhccchhh
Confidence 88888888889999999988 7777888888887776665444
No 266
>KOG3762|consensus
Probab=92.31 E-value=0.096 Score=45.04 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=40.2
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchH-HHHHHHHHHHHHHHHHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIP-ALVGTNLTGFVAGVATAF 58 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~ 58 (237)
..+.+.+...-.+..+++.+++|+++||+-+|+ .++.+.+....+.++..+
T Consensus 45 p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 45 PAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 667888888899999999999999999996555 555566666666666665
No 267
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=91.45 E-value=3 Score=35.44 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=70.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh---h-c------cHHHHHHHHHHHhhccc
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF---A-S------TFWQFAICRFFVGLAFD 77 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~------~~~~~~~~~~l~g~~~~ 77 (237)
+...+..-+...+..+.|.+...++.+|+|..+.=+++.....++..+... . . +...++.+-.+.=+|.=
T Consensus 292 ~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW 371 (432)
T PF06963_consen 292 PSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 456667777777888899999999999999998877776654433332221 1 1 11222222222223333
Q ss_pred hhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
.......-++.|..|+++||...+. .+....+..++...+..
T Consensus 372 ~fDL~~~qi~Qe~V~~~~Rg~v~gv-q~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 372 SFDLAVTQIMQENVPESERGAVSGV-QNSLQSLFELLSFVLTI 413 (432)
T ss_pred hhhHHHHHhhcccCCHHHhhHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3456667788999999999999988 55455554444444433
No 268
>KOG1330|consensus
Probab=91.14 E-value=0.34 Score=41.03 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccc-------hHHHHHHHHHHH---HHHHHHH--hhccHHHHHHHHHHHhhcc
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGR-------IPALVGTNLTGF---VAGVATA--FASTFWQFAICRFFVGLAF 76 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-------r~~~~~~~~~~~---i~~~~~~--~~~~~~~~~~~~~l~g~~~ 76 (237)
.+..+...+...++.+|.+++|.++||+.| .+.=.....+.+ +..+.+. +..+........++.|...
T Consensus 283 ~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~ 362 (493)
T KOG1330|consen 283 NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETI 362 (493)
T ss_pred ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344556677778889999999999999432 111111111111 1111111 1222222223334444322
Q ss_pred -chhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2966 77 -DNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY 121 (237)
Q Consensus 77 -~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (237)
-...+...-...|..|++.|..+.++-..+....|.+-+|.+.+.
T Consensus 363 ~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 363 SWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred HhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence 223445556788999999999998885544555555555533333
No 269
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=89.38 E-value=9 Score=30.11 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhhhhhhhhcccc-cccchHHHHH----HHHHHHHHHHHHHh-h----ccHHHHHHHHHHHhhccchhhhH
Q psy2966 13 LAQAIFFCGAIVGGLVFGWVAD-HFGRIPALVG----TNLTGFVAGVATAF-A----STFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~----~~~~~~i~~~~~~~-~----~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
.....+..|..+|.+..|+... ++.||+.+.. +.+...+..+..+. . .+...+++.-++.|++.=+.+++
T Consensus 145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V 224 (267)
T PF07672_consen 145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV 224 (267)
T ss_pred HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3455566677788788888876 4466665442 23333333333211 1 13456777778888765556666
Q ss_pred Hhhhhhhh--cCCchhHHHHHHHHHH
Q psy2966 83 MYILVLEY--VGPSWRTFVANMSIAI 106 (237)
Q Consensus 83 ~~~~~~e~--~~~~~r~~~~~~~~~~ 106 (237)
....-.|. ..|++-|...|+.++.
T Consensus 225 iL~lPhEyK~~~pk~ig~~Fg~iWGf 250 (267)
T PF07672_consen 225 ILNLPHEYKGYNPKKIGIQFGLIWGF 250 (267)
T ss_pred HhcChhhhcCCCcceehhHHHHHHHH
Confidence 66555555 4445455555554443
No 270
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=89.23 E-value=0.11 Score=41.86 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---c-----chHHHHHHHHHHHHHHHH
Q psy2966 70 FFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---A-----NWQYLCVITSLPLLVAVI 141 (237)
Q Consensus 70 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~-----~w~~~~~~~~~~~~~~~~ 141 (237)
++.|.+.+..+.....+.+. +|+++... ...++++++++..++.... . +-...|....++.++.++
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y~~a-----~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~ 78 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKYTQA-----VMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCII 78 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHHHHH-----HHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHH
Confidence 44566666666666666664 55544321 2233444444433322211 1 112334444444455555
Q ss_pred HhhccccChH
Q psy2966 142 TPWIVPESAR 151 (237)
Q Consensus 142 ~~~~~pe~p~ 151 (237)
.+..++.+|.
T Consensus 79 ~~~~l~~~~~ 88 (309)
T PF01733_consen 79 LYFILPRSPF 88 (309)
T ss_dssp ----------
T ss_pred HHHHhccChH
Confidence 5556666653
No 271
>KOG1479|consensus
Probab=89.04 E-value=5.7 Score=33.32 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=67.6
Q ss_pred hhhHHHHH-HHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHhhccchhhh
Q psy2966 10 LPTLAQAI-FFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA-------FASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
..-+.... +++.-.+|.+.+.+..+.=.|+..+....=...+..+.+. +-.+-+..++...+.|+..|-...
T Consensus 283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 283 YALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred hHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 33444555 7888889977777776653333333222222222222211 124556677888999999998888
Q ss_pred HHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 82 MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWI 118 (237)
Q Consensus 82 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 118 (237)
....+..+-.|++++..+..+ .......|...|..+
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~-m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNL-MVFFLVGGLALGSLL 398 (406)
T ss_pred heehhcCCCCChHHHHHHHHH-HHHHHHHHHHHhhHH
Confidence 888888999999988777666 455555555555443
No 272
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=88.57 E-value=7.1 Score=33.32 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 60 STFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWI 118 (237)
Q Consensus 60 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 118 (237)
++-+..++..++.|+..|-.......+..+..++++|..+..+ ...+..+|...|..+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~-~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGAL-MVIFLLVGLALGAVL 427 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456667778999999998888888899999999999877766 555555555555443
No 273
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.76 E-value=1.5 Score=29.00 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=25.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHH
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLT 48 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~ 48 (237)
...-.+.-+++..+.....|++.||| |.++..++.+++
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34445666777777778888999988 777765554433
No 274
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=84.22 E-value=1.1 Score=35.13 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcc
Q psy2966 123 ANWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 123 ~~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
.+|++++.+.+++..+-++.+..+
T Consensus 38 ~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 38 NNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379988887776665555544443
No 275
>KOG1479|consensus
Probab=84.13 E-value=21 Score=30.07 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH----Hhcc----chHHHHHHHH
Q psy2966 62 FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA----YYVA----NWQYLCVITS 133 (237)
Q Consensus 62 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~----~~~~----~w~~~~~~~~ 133 (237)
+...++.-.+.+++.+..+...+...++.-++-.++.. .+.++++.+..... .... +-...|....
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm------~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVM------SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHH------hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 44555566777777777666666655554433333322 23333333332222 1222 2234555555
Q ss_pred HHHHHHHHHhhccccChH
Q psy2966 134 LPLLVAVITPWIVPESAR 151 (237)
Q Consensus 134 ~~~~~~~~~~~~~pe~p~ 151 (237)
++.++.++.+..+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 556666666666777763
No 276
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=83.22 E-value=6.6 Score=33.13 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=65.6
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHH--HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA--LVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYI 85 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 85 (237)
...-|.+-++..+.+.++++..|++-.++++..- +....++.+...++++..++.|..+++.++.+.......+++..
T Consensus 284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~ 363 (412)
T PF01770_consen 284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF 363 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888899999999767666443 33344555566677788899999988888777766666666666
Q ss_pred hhhhhcCCchhHHHHHH
Q psy2966 86 LVLEYVGPSWRTFVANM 102 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~ 102 (237)
-++.....+.-+..+|+
T Consensus 364 qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 364 QIAKNLSEERYALVFGI 380 (412)
T ss_pred HHHHhccccceeeeeee
Confidence 66666665554544444
No 277
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=82.97 E-value=4.4 Score=34.98 Aligned_cols=93 Identities=6% Similarity=0.027 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccch--HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRI--PALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
.-|..-++..+.+.++++..|++-.++.+- ..+-+..++.+...++++.++|+|..+++..+.+.......++...-+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777888889999999997776542 344444555556667778889999999999988888887788888888
Q ss_pred hhhcCCchhHHHHHH
Q psy2966 88 LEYVGPSWRTFVANM 102 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~ 102 (237)
+.....+.-|..+|+
T Consensus 379 A~~L~~~~~aLvFGi 393 (511)
T TIGR00806 379 ASSLSKELCALVFGI 393 (511)
T ss_pred HHHhcccceEEEEec
Confidence 888777766666655
No 278
>KOG4332|consensus
Probab=80.26 E-value=13 Score=29.72 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchH--HHHHHHHHHHHHHHHHHh----h---ccHHHHHHHHHHHhhccch
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIP--ALVGTNLTGFVAGVATAF----A---STFWQFAICRFFVGLAFDN 78 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~~~~~~~i~~~~~~~----~---~~~~~~~~~~~l~g~~~~~ 78 (237)
+.--|.+.+.++++.++|+-+...+..|-..|. .+.+..++.+....+... + .+...-+++.++.-.+.|.
T Consensus 281 ~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGl 360 (454)
T KOG4332|consen 281 EIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGL 360 (454)
T ss_pred cCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhh
Confidence 445678888899999999988887777655552 333333333333222211 1 1233335555666677888
Q ss_pred hhhHHhhhhhhhcCCchhHHHHHH
Q psy2966 79 CFTMMYILVLEYVGPSWRTFVANM 102 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~~r~~~~~~ 102 (237)
.+|....+=.+..|.+.|+..+..
T Consensus 361 fwPSimkmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 361 FWPSIMKMRSQYIPEEARSTIMNF 384 (454)
T ss_pred cchHHHHHHHhhCCHHHHhhhhhh
Confidence 899999999999999999877765
No 279
>KOG3097|consensus
Probab=74.46 E-value=11 Score=30.91 Aligned_cols=77 Identities=6% Similarity=0.035 Sum_probs=56.6
Q ss_pred HHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCC
Q psy2966 16 AIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGP 93 (237)
Q Consensus 16 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~ 93 (237)
...++..+..+++.+.+.+++|-|.++..+...+...-. .-+-+.+..++..-...|++.+..+...-+|+++.-..
T Consensus 65 ~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ 141 (390)
T KOG3097|consen 65 GALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN 141 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence 344556667778888999999999999887766654422 22345677788888999999998888888888776443
No 280
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=74.32 E-value=71 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhccc
Q psy2966 37 GRIPALVGTNLTGFVAGVATAFA-STFWQFAICRFFVGLAFD 77 (237)
Q Consensus 37 Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~~~ 77 (237)
||.+-++++.++++++++...+. +..+.+.....+.+++.+
T Consensus 55 ~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ 96 (701)
T TIGR01667 55 GRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFI 96 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 66788888888888888777664 444555555555555444
No 281
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=71.84 E-value=6.5 Score=35.29 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=32.1
Q ss_pred CchhhHHHHHHHH-hhhhhhhhhhccccccc--chHHHHHHHHHHHHHH
Q psy2966 8 DTLPTLAQAIFFC-GAIVGGLVFGWVADHFG--RIPALVGTNLTGFVAG 53 (237)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~ 53 (237)
..+.+++.....+ +.++|.+++|+++||++ .|+.+.++.++..+..
T Consensus 365 ~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 365 SAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 4556666666555 56899999999999998 4456666655555543
No 282
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=71.43 E-value=1.6 Score=35.22 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=3.6
Q ss_pred HHHHHHHhhhhhhhhhhccccc-ccchHHHHHHHHHHHHH---HHHHH----------hhccHHHHHHHHHHHhhccchh
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADH-FGRIPALVGTNLTGFVA---GVATA----------FASTFWQFAICRFFVGLAFDNC 79 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~---~~~~~----------~~~~~~~~~~~~~l~g~~~~~~ 79 (237)
....++++-.+|..+.++.--+ -.+|...+ ..+.=.+. .+.+. ..++-+..++..++.|+..|-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 3456777777888776653211 12443332 21111111 11110 1223355666788999999988
Q ss_pred hhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 80 FTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWI 118 (237)
Q Consensus 80 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 118 (237)
......+..+..++++|..+..+ .......|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~-~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSV-MSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88889999999999999777666 455555555555443
No 283
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=70.89 E-value=13 Score=30.87 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=28.2
Q ss_pred hccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 59 ASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWI 118 (237)
Q Consensus 59 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~ 118 (237)
.+|+.....--.+..+..=...++.+..+.|.+=.++--.-.|...+...+.+.+..|.+
T Consensus 231 gNsF~v~~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv~v~~G~~~G~lia~~~l~~p~~ 290 (374)
T PF01528_consen 231 GNSFYVSVSDMVFGAINVFAVLSIIYLIVIEVVLARYVKVQFGPHLGTLIACGILGLPAI 290 (374)
T ss_pred hcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 455543333333333333334567777788887555544333332233333333444433
No 284
>COG1422 Predicted membrane protein [Function unknown]
Probab=70.51 E-value=43 Score=25.13 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy2966 107 FFTLAASLLPWIAY 120 (237)
Q Consensus 107 ~~~~g~~~~~~~~~ 120 (237)
+..++..++|.+..
T Consensus 30 ~~~ln~~f~P~i~~ 43 (201)
T COG1422 30 GGALNVVFGPLLSP 43 (201)
T ss_pred HHHHHHHHhhhccc
Confidence 33445555665544
No 285
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=70.38 E-value=51 Score=25.93 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy2966 129 CVITSLPLLVAVITPWIV 146 (237)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~ 146 (237)
-++..++.+++...+.++
T Consensus 118 n~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 118 NYIGVALVLVSGIIFSFI 135 (254)
T ss_pred HHHHHHHHHHHHHheeee
Confidence 334444455555555554
No 286
>KOG0637|consensus
Probab=67.99 E-value=6.1 Score=33.73 Aligned_cols=74 Identities=12% Similarity=-0.023 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
-..++.+...+.+....++.||+|-|+.+..+...+.++..+.....+.+.....+-..|+-.+....+-+..+
T Consensus 337 GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~ 410 (498)
T KOG0637|consen 337 GLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGAL 410 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHH
Confidence 34556666778888899999999977777777666777777777777777777777777755544443333333
No 287
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=64.69 E-value=18 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHH
Q psy2966 15 QAIFFCGAIVGGLVFGWVADHFGRIPAL 42 (237)
Q Consensus 15 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~ 42 (237)
.....++..++..+.+.+.|..|.+..+
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 120 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQFLGWRAPF 120 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhcccchHHHH
Confidence 3334444444444445554544444433
No 288
>KOG3312|consensus
Probab=56.98 E-value=65 Score=22.85 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=17.5
Q ss_pred HHhhccccChHHHHhcCCHHHHHHHHHHHHHHhCC
Q psy2966 141 ITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNK 175 (237)
Q Consensus 141 ~~~~~~pe~p~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (237)
+.|.++.++.+|-..+.+.++..+-+++....+.+
T Consensus 25 itWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~~~~~ 59 (186)
T KOG3312|consen 25 ITWVLVYRTDKYKRLKAEVDKQSKKLEKKKEENGD 59 (186)
T ss_pred ceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44555666666554444445544444444433333
No 289
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=56.56 E-value=27 Score=29.00 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=9.4
Q ss_pred hhccccCchHHHHHHHH
Q psy2966 204 VLDLFRTPRLRNITCLL 220 (237)
Q Consensus 204 ~~~~~~~~~~~~~~~~~ 220 (237)
+++.+++|......+..
T Consensus 238 ~~~~~~nP~~~a~~lgl 254 (385)
T PF03547_consen 238 ILKLFKNPPLIAIILGL 254 (385)
T ss_pred HHHHHhCcHHHHHHHHH
Confidence 35566677665444443
No 290
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=56.19 E-value=25 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=17.5
Q ss_pred HHHHHhhhhhhhhhhcccccccc
Q psy2966 16 AIFFCGAIVGGLVFGWVADHFGR 38 (237)
Q Consensus 16 ~~~~~~~~~~~~~~g~l~dr~Gr 38 (237)
.-+.+++.+++.+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 44567777888888888888775
No 291
>KOG1237|consensus
Probab=55.50 E-value=40 Score=29.98 Aligned_cols=59 Identities=5% Similarity=-0.098 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2966 61 TFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAY 120 (237)
Q Consensus 61 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~ 120 (237)
+..+++.-.++.|++.........-+..+-+|++.|+.+.++ +....++|..++..+..
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al-~l~t~a~G~~lss~Lv~ 515 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATAL-WLLTVAVGNYLSSVLVS 515 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456677778999999988888888888999999999999999 67777777777766653
No 292
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.17 E-value=13 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=24.5
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHH
Q psy2966 14 AQAIFFCGAIVGGLVFGWVADHFGRIPALVG 44 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 44 (237)
..+.+.+++.++......++-|+|||+.+-.
T Consensus 33 ~ns~yyfv~Il~atlfill~Ik~~~kwI~r~ 63 (277)
T COG3389 33 SNSVYYFVYILVATLFILLAIKLGRKWIFRG 63 (277)
T ss_pred cCceeeehhHHHHHHHHHhheeecceeeehh
Confidence 4566777888888888889999999986544
No 293
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=54.68 E-value=32 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=15.6
Q ss_pred HHHHhhhhhhhhhhcccccccch
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRI 39 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr 39 (237)
-+.+|..+.+.+.|++.+|..++
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~ 83 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRS 83 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc
Confidence 34566667777777777777665
No 294
>KOG3810|consensus
Probab=54.62 E-value=47 Score=27.73 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=61.6
Q ss_pred hHHHHHHHHhhhhhhhhhhcccccccchH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhh
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIP--ALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLE 89 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 89 (237)
|..-++..+.++++++..|.+.-++.|.. .+.++....+-..+++.-++++|..+++..+.........++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 44456667778899999999988777764 3344444444455666667888888887777666555566666666777
Q ss_pred hcCCchhHHHHHH
Q psy2966 90 YVGPSWRTFVANM 102 (237)
Q Consensus 90 ~~~~~~r~~~~~~ 102 (237)
....+.-|..+|+
T Consensus 354 nL~~e~~gLvFGi 366 (433)
T KOG3810|consen 354 NLSSELFGLVFGI 366 (433)
T ss_pred hhhhhhheeeeeh
Confidence 7766665655555
No 295
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=54.47 E-value=46 Score=23.37 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.5
Q ss_pred hhhhcCCchhHHHHHH
Q psy2966 87 VLEYVGPSWRTFVANM 102 (237)
Q Consensus 87 ~~e~~~~~~r~~~~~~ 102 (237)
+.|++|++.|....+.
T Consensus 60 Lkdi~P~~~R~~i~~~ 75 (137)
T PF04281_consen 60 LKDIFPPSVRNWISST 75 (137)
T ss_pred HhccCCHHHHHHHHHH
Confidence 5799999999887766
No 296
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=50.86 E-value=38 Score=21.04 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=11.6
Q ss_pred HHHHHHHHhhccchhhhHHhhhhhhhcCCc
Q psy2966 65 FAICRFFVGLAFDNCFTMMYILVLEYVGPS 94 (237)
Q Consensus 65 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~ 94 (237)
..++.++.-+-....+|...---.+|.+++
T Consensus 41 ~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~ 70 (76)
T PF06645_consen 41 YGAGVVLTLLVVVPPWPFYNRHPLKWLPPK 70 (76)
T ss_pred HHHHHHHHHhheeCCcHhhcCCcccCCCCC
Confidence 333333333333334444333333444443
No 297
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=49.61 E-value=2.1e+02 Score=26.33 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=26.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhccc
Q psy2966 37 GRIPALVGTNLTGFVAGVATAFA-STFWQFAICRFFVGLAFD 77 (237)
Q Consensus 37 Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~g~~~~ 77 (237)
||.+-++++.+++.++++...+. +..+.+..+..+.+++.+
T Consensus 55 ~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ 96 (704)
T TIGR01666 55 GRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFI 96 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 67778888888888777776654 444555555555555443
No 298
>KOG0055|consensus
Probab=49.52 E-value=2.5e+02 Score=27.69 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q psy2966 106 IFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAV 140 (237)
Q Consensus 106 ~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 140 (237)
+...+..++..++.++..+|+...+..+...++.+
T Consensus 789 vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~ 823 (1228)
T KOG0055|consen 789 VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLIL 823 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666799987776655544443
No 299
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=48.82 E-value=64 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.7
Q ss_pred hhhhhcCCchhHHHHHH
Q psy2966 86 LVLEYVGPSWRTFVANM 102 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~ 102 (237)
-+.|++|+..|....+.
T Consensus 57 ALkDm~Pp~~R~~i~~~ 73 (145)
T TIGR00986 57 ALKDIVPPTTRGWIYHK 73 (145)
T ss_pred HHHhhCCHHHHHHHHHH
Confidence 35799999999877665
No 300
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=47.37 E-value=1.4e+02 Score=23.68 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHh-hccHHHHHHHHHHHhhccc
Q psy2966 44 GTNLTGFVAGVATAF-ASTFWQFAICRFFVGLAFD 77 (237)
Q Consensus 44 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~g~~~~ 77 (237)
.+.+++++..++..+ .++.+.+.+..++.+++.+
T Consensus 4 ~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ 38 (284)
T PF12805_consen 4 ATLLCFALASLLVGLLFPYPWLLILVLALLTFFFG 38 (284)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 344444444444444 3455555555555555444
No 301
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=45.10 E-value=2e+02 Score=26.23 Aligned_cols=60 Identities=5% Similarity=-0.061 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 62 FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 62 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
.+..+.-.++.+.+.........-+..+-.|++.|+...++ +....++|.++...+...-
T Consensus 565 ~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~-~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 565 ILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQAL-WLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 34445555666666666666666667778899999988888 6777788888876666554
No 302
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=44.86 E-value=93 Score=20.79 Aligned_cols=16 Identities=19% Similarity=-0.058 Sum_probs=9.2
Q ss_pred chhhhHHhhhhhhhcC
Q psy2966 77 DNCFTMMYILVLEYVG 92 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~~ 92 (237)
-+.+....++..|...
T Consensus 64 ~GgfTTFSTf~~e~~~ 79 (108)
T PRK14229 64 CGGLTTFSTLNDELQR 79 (108)
T ss_pred ccccccHHHHHHHHHH
Confidence 3345566666666654
No 303
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=40.70 E-value=60 Score=23.31 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=38.6
Q ss_pred cccccccchHHHHHHHHHH-HHHHHHHHh---------hccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHH
Q psy2966 31 WVADHFGRIPALVGTNLTG-FVAGVATAF---------ASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVA 100 (237)
Q Consensus 31 ~l~dr~Grr~~~~~~~~~~-~i~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~ 100 (237)
.++||.-||..+..+.-.. +++.+.... .+.+..+++...+.|++ ...+.|..++-..+++.-|...
T Consensus 56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~g---llGisYGilSaSWD~~r~GSll 132 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLG---LLGISYGILSASWDPEREGSLL 132 (153)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHH---HHhhhhhhcccccCCCCCCCcc
Confidence 4568887887665553221 111111111 13333333333333332 2344555566667777777777
Q ss_pred HHHHHHHHHHHHH
Q psy2966 101 NMSIAIFFTLAAS 113 (237)
Q Consensus 101 ~~~~~~~~~~g~~ 113 (237)
|+ -.+-.+++-+
T Consensus 133 G~-~e~~~N~~r~ 144 (153)
T PF11947_consen 133 GW-EEFKRNWGRM 144 (153)
T ss_pred cH-HHHHHhHHHH
Confidence 77 4555444433
No 304
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=39.39 E-value=81 Score=24.40 Aligned_cols=36 Identities=3% Similarity=-0.119 Sum_probs=24.9
Q ss_pred HHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHH
Q psy2966 66 AICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANM 102 (237)
Q Consensus 66 ~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~ 102 (237)
...-.-.|.+++........-+.+.+|. ......++
T Consensus 175 ~ALAMasGvGSgSMMaAa~~aL~~~~P~-~a~~i~A~ 210 (241)
T PF11299_consen 175 YALAMASGVGSGSMMAAASGALAAAYPE-MADQILAF 210 (241)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHCcc-hHHHHHHH
Confidence 3445567888888888888888888864 44444444
No 305
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=38.98 E-value=2.1e+02 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=10.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhcc
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWV 32 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l 32 (237)
.++...++.+|.-.|.-+..-+
T Consensus 452 ~GL~lFla~vG~~aG~~f~~~l 473 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVTAI 473 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHHHH
Confidence 4444555555555555444444
No 306
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=38.42 E-value=1.2e+02 Score=20.78 Aligned_cols=14 Identities=29% Similarity=0.225 Sum_probs=7.4
Q ss_pred hhhHHhhhhhhhcC
Q psy2966 79 CFTMMYILVLEYVG 92 (237)
Q Consensus 79 ~~~~~~~~~~e~~~ 92 (237)
.+....++..|...
T Consensus 70 gfTTFSTf~~e~~~ 83 (119)
T PRK14230 70 SLTTLSGFSLETVT 83 (119)
T ss_pred hHhhHHHHHHHHHH
Confidence 35555555555543
No 307
>PRK10692 hypothetical protein; Provisional
Probab=37.90 E-value=90 Score=19.92 Aligned_cols=20 Identities=20% Similarity=-0.104 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q psy2966 37 GRIPALVGTNLTGFVAGVAT 56 (237)
Q Consensus 37 Grr~~~~~~~~~~~i~~~~~ 56 (237)
.||...+++.++++++.+.+
T Consensus 2 KRk~a~~~GN~lMglGmv~M 21 (92)
T PRK10692 2 KRKNASLLGNVLMGLGLVVM 21 (92)
T ss_pred cchhhHHHhhHHHHHHHHHH
Confidence 36667777777776665543
No 308
>PRK09609 hypothetical protein; Provisional
Probab=37.51 E-value=2.3e+02 Score=23.12 Aligned_cols=13 Identities=0% Similarity=0.143 Sum_probs=5.3
Q ss_pred HHhhccccChHHH
Q psy2966 141 ITPWIVPESARWL 153 (237)
Q Consensus 141 ~~~~~~pe~p~~~ 153 (237)
+.+++..--++|.
T Consensus 96 f~~~~fk~~~~~f 108 (312)
T PRK09609 96 VGWFFFKFGKKFF 108 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 309
>KOG3626|consensus
Probab=36.06 E-value=64 Score=29.65 Aligned_cols=58 Identities=17% Similarity=0.039 Sum_probs=39.7
Q ss_pred HHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 65 FAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 65 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+++..++.-+..+...+.....+-...++|+|..++|+-+.+...+|.+-+|++-+.+
T Consensus 589 Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ 646 (735)
T KOG3626|consen 589 FLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAV 646 (735)
T ss_pred HHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhh
Confidence 3333333344444444566667788999999999999966666677777788776665
No 310
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=35.99 E-value=2.2e+02 Score=22.48 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=21.7
Q ss_pred hccchhhhHHhhhhhhhcCCchhHHHHHH
Q psy2966 74 LAFDNCFTMMYILVLEYVGPSWRTFVANM 102 (237)
Q Consensus 74 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~ 102 (237)
...++-.....+.+.+.+|+++|-++.-+
T Consensus 28 ~vL~iDN~iviai~~~~Lp~~qr~ral~~ 56 (254)
T COG0861 28 IVLGIDNAIVIAILASKLPPKQRKKALFI 56 (254)
T ss_pred HHHHhhHHHHHHHHHhhCCHHHHHHHHHH
Confidence 33555677788889999999998776544
No 311
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=35.97 E-value=1.9e+02 Score=21.70 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHHHHhhhhhhhhhhcc---cccccchHHHHHHHHHHHHHHHH
Q psy2966 15 QAIFFCGAIVGGLVFGWV---ADHFGRIPALVGTNLTGFVAGVA 55 (237)
Q Consensus 15 ~~~~~~~~~~~~~~~g~l---~dr~Grr~~~~~~~~~~~i~~~~ 55 (237)
.....++..+|..+++.+ .++..+|+.....+.+..+....
T Consensus 52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~ 95 (209)
T PF06912_consen 52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLI 95 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 344445566777777777 23344455454444444444333
No 312
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=35.38 E-value=1.5e+02 Score=20.32 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=8.4
Q ss_pred HHHHhhccccChH
Q psy2966 139 AVITPWIVPESAR 151 (237)
Q Consensus 139 ~~~~~~~~pe~p~ 151 (237)
-++.++++|+.|.
T Consensus 56 Yi~l~~~lp~~P~ 68 (118)
T PRK10697 56 YIILSFALDPMPD 68 (118)
T ss_pred HHHHHHhccCCcc
Confidence 3456667787764
No 313
>PHA03242 envelope glycoprotein M; Provisional
Probab=35.34 E-value=2.1e+02 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=19.4
Q ss_pred hccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhH
Q psy2966 59 ASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRT 97 (237)
Q Consensus 59 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~ 97 (237)
.+|+.....--.+..+..=...++.+..+.|.+=.++--
T Consensus 245 gNsF~v~~~~~v~~ai~~F~vL~ii~liv~E~vL~~Yv~ 283 (428)
T PHA03242 245 ANNFHLSLPGTLVCLTAVFALLVVLLLVVVEGVLSHYVR 283 (428)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455443333333333333334566777777876555443
No 314
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=34.03 E-value=1.6e+02 Score=21.87 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=13.0
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHH
Q psy2966 24 VGGLVFGWVADHFGRIPALVGTNLTGFVA 52 (237)
Q Consensus 24 ~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 52 (237)
++.++.-.+..|.++|-.+.+..++.++.
T Consensus 43 i~g~vyml~~~KV~K~G~~~i~~~i~gl~ 71 (186)
T PF09605_consen 43 ICGIVYMLMVAKVPKRGAFLIMGIIMGLI 71 (186)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 33333444455555555544444443333
No 315
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.98 E-value=1.3e+02 Score=19.93 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=11.7
Q ss_pred hhhhhhhcccc-cccchHHHHHHHHH
Q psy2966 24 VGGLVFGWVAD-HFGRIPALVGTNLT 48 (237)
Q Consensus 24 ~~~~~~g~l~d-r~Grr~~~~~~~~~ 48 (237)
+.+.+.|...| ++|-++.+.+.+++
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 33444444444 55665544444333
No 316
>PHA03237 envelope glycoprotein M; Provisional
Probab=30.42 E-value=2.2e+02 Score=24.37 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=19.6
Q ss_pred hccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchh
Q psy2966 59 ASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWR 96 (237)
Q Consensus 59 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r 96 (237)
.+|+.....--.+.++..=...++.+..+.|.+=.++-
T Consensus 248 gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv 285 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYV 285 (424)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45544333333333333333456677777887655544
No 317
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=30.39 E-value=1.1e+02 Score=19.47 Aligned_cols=18 Identities=22% Similarity=0.008 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy2966 38 RIPALVGTNLTGFVAGVA 55 (237)
Q Consensus 38 rr~~~~~~~~~~~i~~~~ 55 (237)
||...+++.++++++.+.
T Consensus 3 Rk~a~~~GN~lMglGmv~ 20 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVV 20 (89)
T ss_pred chhhHHHhhHHHHHhHHH
Confidence 666677777776666554
No 318
>KOG2325|consensus
Probab=29.95 E-value=19 Score=31.18 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=44.8
Q ss_pred HHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHH
Q psy2966 70 FFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSL 134 (237)
Q Consensus 70 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~ 134 (237)
++.|.+.........+.-+|...+++++...+. ++.....+..++|++..... +.++...+...
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~-~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~ 462 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGV-FSISGSIARVVGPIFSTAIFTLSGPRPVWIILLC 462 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEE-EEeccchhhhhhHHHHhhhHHhcCccHHHHHHHH
Confidence 455555555566678888999999999998888 67777777777777766543 55555444333
No 319
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.46 E-value=4.1e+02 Score=26.65 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhc
Q psy2966 107 FFTLAASLLPWIAYYV 122 (237)
Q Consensus 107 ~~~~g~~~~~~~~~~~ 122 (237)
++.+|..++.++...+
T Consensus 143 GGIIG~lLs~lL~~Lf 158 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLL 158 (1355)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3444444444443333
No 320
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.20 E-value=2.5e+02 Score=21.66 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhcc--ccChHHHHhcCCHHHHHHHHHHHHH
Q psy2966 124 NWQYLCVITSLPLLVAVITPWIV--PESARWLVSQGRVDEAVVIMKRFEK 171 (237)
Q Consensus 124 ~w~~~~~~~~~~~~~~~~~~~~~--pe~p~~~~~~~~~~~~~~~~~~~~~ 171 (237)
++.+++++.+++..+.+..+.+- -|.--|....++...+...++.+++
T Consensus 50 ~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 50 GSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 44455555554433332222222 2333344456666677777776664
No 321
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=28.39 E-value=2.1e+02 Score=20.00 Aligned_cols=20 Identities=10% Similarity=0.429 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhccccC
Q psy2966 130 VITSLPLLVAVITPWIVPES 149 (237)
Q Consensus 130 ~~~~~~~~~~~~~~~~~pe~ 149 (237)
++.....++.++..+++..+
T Consensus 44 viNt~ttIitFlmvfLIQn~ 63 (132)
T PF04120_consen 44 VINTATTIITFLMVFLIQNT 63 (132)
T ss_pred HHccHHHHHHHHHHHHHHhh
Confidence 33344445555566666554
No 322
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=27.95 E-value=1.2e+02 Score=20.26 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHH
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA 55 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 55 (237)
...+=..+++.-.+++.++++++..|+.-+.+.=.++..+..++..+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 33455566666677788888888888776665545554444444433
No 323
>PRK04972 putative transporter; Provisional
Probab=27.33 E-value=4.5e+02 Score=23.48 Aligned_cols=27 Identities=0% Similarity=-0.198 Sum_probs=15.6
Q ss_pred cchhhhHHhhhhhhhcCCchhHHHHHH
Q psy2966 76 FDNCFTMMYILVLEYVGPSWRTFVANM 102 (237)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~r~~~~~~ 102 (237)
.+...+....+..|....+.-..+++.
T Consensus 511 G~~t~~~~l~~~~~~~~~~~~~~gYa~ 537 (558)
T PRK04972 511 GARTCAPAMEIISDTARSNIPALGYAG 537 (558)
T ss_pred CCCCCcHHHHHHHhhcCCCCcccccHh
Confidence 344456777777887765444444444
No 324
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=27.19 E-value=1.4e+02 Score=19.07 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=24.1
Q ss_pred hhhhhhhhhcccccccc-------hHHHHHHHHHHHHHHHHHHhhcc
Q psy2966 22 AIVGGLVFGWVADHFGR-------IPALVGTNLTGFVAGVATAFAST 61 (237)
Q Consensus 22 ~~~~~~~~g~l~dr~Gr-------r~~~~~~~~~~~i~~~~~~~~~~ 61 (237)
...+.+..+++.+|..+ ++.+..+.++...+.++.+..++
T Consensus 31 ~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 31 ATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566665554 67777776766677666665443
No 325
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=25.63 E-value=23 Score=31.20 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2966 67 ICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV 122 (237)
Q Consensus 67 ~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (237)
+..++.-+..+.........+-...|+++|+.+.|+.+.+...+|.+-+|++-+.+
T Consensus 456 ~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~i 511 (539)
T PF03137_consen 456 ILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAI 511 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence 33334444444455556666778899999999999855566667777777765554
No 326
>KOG4255|consensus
Probab=25.62 E-value=55 Score=27.00 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHHhhccchhhhHHhhhhhhhcCCchhHHHHH
Q psy2966 41 ALVGTNLTGFVAGVATAFA----------STFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVAN 101 (237)
Q Consensus 41 ~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~ 101 (237)
.+.+-..+..++.++.++- ..-|.++...+...+...........+++..-|.-.|+...|
T Consensus 81 iif~ll~~a~v~~l~laflW~~ts~V~g~~hS~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG 151 (439)
T KOG4255|consen 81 IIFVLLLLACVCQLGLAFLWHDTSPVFGALHSWAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVG 151 (439)
T ss_pred chhHHHHHHHHHHHHHHHHHhcchhhhcCcchHHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHh
Confidence 3344344445666666652 223455555566665555555566667777766666554433
No 327
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=25.04 E-value=1.1e+02 Score=17.96 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhh
Q psy2966 123 ANWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 123 ~~w~~~~~~~~~~~~~~~~~~~ 144 (237)
.+||...++.+++.++...++.
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Yp 24 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYP 24 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhh
Confidence 3788887777777776655543
No 328
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=23.97 E-value=1.1e+02 Score=15.09 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=2.6
Q ss_pred hhccccChH
Q psy2966 143 PWIVPESAR 151 (237)
Q Consensus 143 ~~~~pe~p~ 151 (237)
..+.+|+||
T Consensus 20 AI~FRePPr 28 (29)
T PF01405_consen 20 AIFFREPPR 28 (29)
T ss_dssp HHHSS----
T ss_pred hhhccCCCC
Confidence 344577775
No 329
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=23.87 E-value=2.9e+02 Score=24.48 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHH
Q psy2966 68 CRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLA 111 (237)
Q Consensus 68 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g 111 (237)
..++..+.....+....++-+.+.+|..=|+.+.+ .+...++|
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTL-LNTvSNLG 453 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTL-LNTVSNLG 453 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHH-HHHHHhcC
Confidence 34556666677788888888899999988888888 56554444
No 330
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=23.57 E-value=3.1e+02 Score=20.36 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=11.0
Q ss_pred hhhhhhhcccccccchHHHHHHHHH
Q psy2966 24 VGGLVFGWVADHFGRIPALVGTNLT 48 (237)
Q Consensus 24 ~~~~~~g~l~dr~Grr~~~~~~~~~ 48 (237)
++.++.-.+..|.+|+-++.+..++
T Consensus 45 ~~g~vyml~~~KV~K~G~~~i~~~i 69 (189)
T TIGR02185 45 LVGIIFFLMVAKVPKRGVIFIFGIL 69 (189)
T ss_pred HHhHHHhhhhhhcCCccHHHHHHHH
Confidence 3333333445555555444443333
No 331
>PRK14205 camphor resistance protein CrcB; Provisional
Probab=22.94 E-value=2.5e+02 Score=19.06 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=9.1
Q ss_pred hhhhHHhhhhhhhcCC
Q psy2966 78 NCFTMMYILVLEYVGP 93 (237)
Q Consensus 78 ~~~~~~~~~~~e~~~~ 93 (237)
+.+....++..|...-
T Consensus 70 GgfTTFSTf~~e~~~l 85 (118)
T PRK14205 70 GAFTTFSTFKLESVQL 85 (118)
T ss_pred cccccHHHHHHHHHHH
Confidence 3455566666666544
No 332
>COG4769 Predicted membrane protein [Function unknown]
Probab=22.55 E-value=65 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=8.5
Q ss_pred hhccHHHHHHHHHHHh
Q psy2966 58 FASTFWQFAICRFFVG 73 (237)
Q Consensus 58 ~~~~~~~~~~~~~l~g 73 (237)
+.+|...+.+.+++.+
T Consensus 116 F~hNl~QLivas~Lv~ 131 (181)
T COG4769 116 FTHNLGQLIVASFLVF 131 (181)
T ss_pred HHHhHHHHHHHHHHHh
Confidence 3455555555555544
No 333
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=22.48 E-value=2.9e+02 Score=21.33 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=33.0
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q psy2966 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGL 74 (237)
Q Consensus 17 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 74 (237)
...+|..+|..+...+.||+.+...-..+.....++.-...-.++.. .++.-.+.|-
T Consensus 10 aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~-~vi~slvlG~ 66 (226)
T PF04474_consen 10 AILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPL-LVILSLVLGT 66 (226)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccH-HHHHHHHHHH
Confidence 34456777777777778887766666666666555544333344444 3344444443
No 334
>KOG3097|consensus
Probab=21.76 E-value=51 Score=27.24 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHH
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTG 49 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 49 (237)
++.+.....+.++..+.+.+.|.++.++||-+.+..+.+.-
T Consensus 310 ~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~ 350 (390)
T KOG3097|consen 310 SRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVH 350 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 45677788888998999999999999999999877665443
No 335
>PRK03818 putative transporter; Validated
Probab=21.64 E-value=5.8e+02 Score=22.76 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=16.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHH
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPAL 42 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~ 42 (237)
.|+...++.+|.--|.-+..-+.+..|.+..+
T Consensus 437 ~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~ 468 (552)
T PRK03818 437 LGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIG 468 (552)
T ss_pred HhHHHHHHHHHhhhhHHHHHHHhccchHHHHH
Confidence 45555555555555555544444444555443
No 336
>COG2119 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=2.4e+02 Score=21.09 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=26.0
Q ss_pred HHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHH
Q psy2966 18 FFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG 53 (237)
Q Consensus 18 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 53 (237)
..+...++.+.+.++++|+..|.+-..+.+++.+..
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 345566777777888999999988877766655554
No 337
>PRK02237 hypothetical protein; Provisional
Probab=21.13 E-value=2.2e+02 Score=19.12 Aligned_cols=43 Identities=16% Similarity=-0.017 Sum_probs=25.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHH
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG 53 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 53 (237)
.|=..+++.-.+++.++++++..|+.-+-+.=.++..+..++.
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~ 100 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGM 100 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhH
Confidence 4555566666667777777777776655444444444444443
No 338
>PRK14233 camphor resistance protein CrcB; Provisional
Probab=20.49 E-value=3.1e+02 Score=19.12 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=9.0
Q ss_pred chhhhHHhhhhhhhcC
Q psy2966 77 DNCFTMMYILVLEYVG 92 (237)
Q Consensus 77 ~~~~~~~~~~~~e~~~ 92 (237)
-+.+....++..|...
T Consensus 78 ~GgfTTFSTf~~E~~~ 93 (133)
T PRK14233 78 LGGYTTVSSFCLQSVN 93 (133)
T ss_pred ccccccHHHHHHHHHH
Confidence 3345556666666643
No 339
>CHL00031 psbT photosystem II protein T
Probab=20.15 E-value=1.4e+02 Score=15.12 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=5.9
Q ss_pred hhccccChH
Q psy2966 143 PWIVPESAR 151 (237)
Q Consensus 143 ~~~~pe~p~ 151 (237)
..+.+|+|+
T Consensus 20 AI~FRePPr 28 (33)
T CHL00031 20 AIFFREPPK 28 (33)
T ss_pred hheecCCCC
Confidence 345688876
No 340
>KOG2927|consensus
Probab=20.13 E-value=1.1e+02 Score=25.31 Aligned_cols=9 Identities=11% Similarity=-0.248 Sum_probs=5.1
Q ss_pred hcCCchhHH
Q psy2966 90 YVGPSWRTF 98 (237)
Q Consensus 90 ~~~~~~r~~ 98 (237)
++|...|-.
T Consensus 209 LWP~~mR~g 217 (372)
T KOG2927|consen 209 LWPRRMRQG 217 (372)
T ss_pred cCcHHHhcc
Confidence 556666643
Done!