Query psy2966
Match_columns 237
No_of_seqs 211 out of 2437
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 22:08:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 1.9E-25 6.3E-30 188.6 20.2 162 9-171 55-245 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 3.7E-21 1.3E-25 160.3 12.0 144 7-151 60-212 (451)
3 3o7q_A L-fucose-proton symport 99.8 3.3E-20 1.1E-24 154.1 15.4 141 8-149 60-234 (438)
4 2gfp_A EMRD, multidrug resista 99.8 2.4E-20 8.3E-25 152.1 12.2 146 3-150 30-179 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 4.8E-17 1.7E-21 137.1 18.0 140 3-144 49-194 (491)
6 2xut_A Proton/peptide symporte 99.6 1.8E-14 6.2E-19 122.4 14.7 138 7-144 52-196 (524)
7 4gc0_A D-xylose-proton symport 99.4 3.2E-12 1.1E-16 107.5 12.6 138 11-149 314-466 (491)
8 2cfq_A Lactose permease; trans 99.4 1.2E-12 4.1E-17 108.3 7.7 141 10-150 260-404 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.3 1.8E-11 6E-16 101.7 12.9 138 8-146 287-433 (451)
10 2cfq_A Lactose permease; trans 99.3 2.8E-13 9.5E-18 112.1 1.2 144 3-148 38-189 (417)
11 3o7q_A L-fucose-proton symport 99.1 3.7E-10 1.3E-14 93.4 10.8 130 8-141 294-427 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.1 1.8E-10 6.1E-15 96.9 6.8 140 9-149 319-475 (491)
13 2xut_A Proton/peptide symporte 98.7 4.6E-08 1.6E-12 82.8 8.1 111 12-123 338-465 (524)
14 2gfp_A EMRD, multidrug resista 98.5 3.5E-08 1.2E-12 79.9 3.2 120 8-131 234-361 (375)
15 2g9p_A Antimicrobial peptide l 52.6 3 0.0001 18.4 0.0 14 28-41 2-15 (26)
16 4dve_A Biotin transporter BIOY 24.6 71 0.0024 23.0 3.5 22 16-37 100-121 (198)
17 3arc_T Photosystem II reaction 24.4 70 0.0024 15.4 2.6 9 143-151 20-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=1.9e-25 Score=188.58 Aligned_cols=162 Identities=24% Similarity=0.460 Sum_probs=143.4
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH------------------hhccHHHHHHHHH
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA------------------FASTFWQFAICRF 70 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~ 70 (237)
.+.+++.+.+.+|.++|++++|+++||+|||++++++.+++.++.++++ ++++++.++++|+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999988 4789999999999
Q ss_pred HHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHHH
Q psy2966 71 FVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVA 139 (237)
Q Consensus 71 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~ 139 (237)
+.|++.|+..+..+.+++|+.|+++|++..++ .+.+...|.++++.++... ..|+..+....++.++.
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSF-NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh-hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 99999999999999999999999999999998 7888888888877766543 14777777777777777
Q ss_pred HHHhhccccChHHHHhcCCHHHHHHHHHHHHH
Q psy2966 140 VITPWIVPESARWLVSQGRVDEAVVIMKRFEK 171 (237)
Q Consensus 140 ~~~~~~~pe~p~~~~~~~~~~~~~~~~~~~~~ 171 (237)
.+..+++||+|+|+..+++.+++.+.+++...
T Consensus 214 ~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 214 LMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 78888999999999999999999988887764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.85 E-value=3.7e-21 Score=160.33 Aligned_cols=144 Identities=9% Similarity=0.049 Sum_probs=128.0
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHhhccchhhhH
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF----ASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.++ +++++.++++|++.|++.+...+.
T Consensus 60 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 139 (451)
T 1pw4_A 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139 (451)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccch
Confidence 4678999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---cc-hHHHHHHHHHHHHHH-HHHhhccccChH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---AN-WQYLCVITSLPLLVA-VITPWIVPESAR 151 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-w~~~~~~~~~~~~~~-~~~~~~~pe~p~ 151 (237)
..+++.|++|+++|+++.++ ...+..+|.+++|.+++.+ .+ ||+.|++.+++.++. ++..+++||+|+
T Consensus 140 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 140 CGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHTTCTTTHHHHHHHH-HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999999999999999 7888888888888887653 25 999888877765544 445567888875
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.84 E-value=3.3e-20 Score=154.08 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=121.8
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHhhccchhhhHHh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVAT---AFASTFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++. .++++++.+++.|++.|++.+...+...
T Consensus 60 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 139 (438)
T 3o7q_A 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHH
Confidence 6789999999999999999999999999999999999999999999998 8889999999999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c------------------------hHHHHHHHHHH
Q psy2966 85 ILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA-----N------------------------WQYLCVITSLP 135 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~------------------------w~~~~~~~~~~ 135 (237)
+++.|++|+++|+++.++ ...+..+|..++|.++..+. . |++.+++.+++
T Consensus 140 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 140 PFVTVLGPESSGHFRLNL-AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHSSCSTTHHHHHHH-HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999998 78888888888888776542 2 89988776665
Q ss_pred HHHHHHHhhc--cccC
Q psy2966 136 LLVAVITPWI--VPES 149 (237)
Q Consensus 136 ~~~~~~~~~~--~pe~ 149 (237)
.++..+..++ .||+
T Consensus 219 ~~~~~~~~~~~~~p~~ 234 (438)
T 3o7q_A 219 VLLVALLIMLTKFPAL 234 (438)
T ss_dssp HHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHcCCcc
Confidence 5444333333 3554
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.83 E-value=2.4e-20 Score=152.13 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=129.9
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhH
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
++.+ +.+.++..+...++..+++++.|+++||+|||++++.+.++.+++.+...+.++++.+++.|++.|++.+...+.
T Consensus 30 ~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 108 (375)
T 2gfp_A 30 LNVR-EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM 108 (375)
T ss_dssp SSST-THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhh
Confidence 3444 678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHH-HhhccccCh
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI-TPWIVPESA 150 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pe~p 150 (237)
..+++.|++|+++|+++.++ ......+|..++|.++..+. +|++.+++.++..++..+ ..+++||+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSL-LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHH-HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 99999999999999999999 88889999999999988774 799988887776655544 555678875
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.75 E-value=4.8e-17 Score=137.11 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=121.2
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhccccc-ccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhh
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADH-FGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFT 81 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 81 (237)
++.+ ..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++.+++++.+.+++.|++.|++.+...+
T Consensus 49 ~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 49 LHIT-RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp CCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 4444 5788999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhh
Q psy2966 82 MMYILVLEYVGPSW--RTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 82 ~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~ 144 (237)
...+++.|++|+++ |+.+.++ +..+..+|..++|.+++.+ .+|++.|++.++..++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSI-FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCcccccceeeehH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 6667776 6778888888888888775 3799999887666555544433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.60 E-value=1.8e-14 Score=122.37 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=116.9
Q ss_pred CCchhhHHHHHHHHhhhhhhhhhhcccccc-cchHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhccchhhhHHh
Q psy2966 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHF-GRIPALVGTNLTGFVAGVATAFAS-TFWQFAICRFFVGLAFDNCFTMMY 84 (237)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~ 84 (237)
+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.+++.++.++++ +.+.+++.|++.|++.+...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 367889999999999999999999999999 999999999999999999999998 999999999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHH--HHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhh
Q psy2966 85 ILVLEYVGPSWRTFVANM--SIAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPW 144 (237)
Q Consensus 85 ~~~~e~~~~~~r~~~~~~--~~~~~~~~g~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~ 144 (237)
+++.|++|+++|+++.+. .......+|..++|.+++.+ .+|++.|++.+++.++..+..+
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999765433 04566777888887776654 2799998887776655554443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=3.2e-12 Score=107.50 Aligned_cols=138 Identities=16% Similarity=0.080 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHH-HHHhhccchhhhHHhh
Q psy2966 11 PTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA----STFWQFAICR-FFVGLAFDNCFTMMYI 85 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~-~l~g~~~~~~~~~~~~ 85 (237)
.........+...++.++++.+.||+|||+.++.+.....++.+..+.. ...+..++.. +..+.......++.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4gc0_A 314 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 393 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445566677888999999999999999999998888877776655432 2222222222 2222222234567789
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHH-HHHhhccccC
Q psy2966 86 LVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---------NWQYLCVITSLPLLVA-VITPWIVPES 149 (237)
Q Consensus 86 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~~-~~~~~~~pe~ 149 (237)
+.+|.+|++.|+++.+++ .....++.++++.+...+. ++...+++.+++.++. ++.++++|||
T Consensus 394 ~~~E~fPt~~R~~~~g~~-~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 394 LLSEIFPNAIRGKALAIA-VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHSSCTTTHHHHHHHH-HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhCCHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 999999999999999994 4445555555544432221 2334555555554444 4566789999
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=1.2e-12 Score=108.30 Aligned_cols=141 Identities=10% Similarity=0.030 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhhhh
Q psy2966 10 LPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLE 89 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 89 (237)
..++..+...++..++.++.|+++||+|||+.+..+.++.++..+..++.++.+.+++..++.+++.+...+....++.|
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888899999999999999999998888888877777777787777777777787766667777889999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH-hhccccCh
Q psy2966 90 YVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPESA 150 (237)
Q Consensus 90 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~pe~p 150 (237)
.+|++.|+++.+..++....+|..++|.+.+.+. ++...|.+.+++.++..+. +++.||++
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999998887445666777778877776543 5666777766665555444 44567664
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=1.8e-11 Score=101.72 Aligned_cols=138 Identities=19% Similarity=0.180 Sum_probs=111.4
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccc--cchHHHHHHHHHHH-HHHHHHHhh--ccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHF--GRIPALVGTNLTGF-VAGVATAFA--STFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
..+.++..+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+.+..++.|++.+...+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 366 (451)
T 1pw4_A 287 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVML 366 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHH
Confidence 45678889999999999999999999999 99998888877766 555555554 36777888888999988888888
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHH-HHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhcc
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTL-AASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIV 146 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~ 146 (237)
...++.|.+|++.|+++.++ ......+ |..++|.+.+.+. +|+..+++.++..++..+..+++
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999 6777777 8888888777653 68888887777766665554444
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=2.8e-13 Score=112.14 Aligned_cols=144 Identities=14% Similarity=0.071 Sum_probs=85.5
Q ss_pred cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHH---HHhhccHH-HHHHHHHHHhhccch
Q psy2966 3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA---TAFASTFW-QFAICRFFVGLAFDN 78 (237)
Q Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~-~~~~~~~l~g~~~~~ 78 (237)
++.+ +.+.+++.+...++..++++++|+++||+|||++++++..+.++.... ..+.+... .....+.+.|++.+.
T Consensus 38 ~g~s-~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 116 (417)
T 2cfq_A 38 NHIS-KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116 (417)
T ss_dssp TCCC-TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTH
T ss_pred hCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 678899999999999999999999999999999999887766543211 12221111 123455666665555
Q ss_pred hhhHHhhhhhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhhcccc
Q psy2966 79 CFTMMYILVLEYVGPS--WRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLVAVITPWIVPE 148 (237)
Q Consensus 79 ~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~pe 148 (237)
.++.......++.++. .|+...+. ......+|..++|.+++.+. +|+..|++.++..++..+..++.||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 117 CFNAGAPAVEAFIEKVSRRSNFEFGR-ARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCHHH-HSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHhhhHHHHHHHHHHhhhhcccchHH-HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 4444444444454432 23333333 22333445555555554432 6888888766655444444444443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.12 E-value=3.7e-10 Score=93.37 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=100.7
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhhhHHhhhh
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILV 87 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 87 (237)
..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.... .++.|++.+...+...++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~ 372 (438)
T 3o7q_A 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLG 372 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999999999999999998888888888777665444 4788888888899999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-hHHHHHHHHHHHHHHHH
Q psy2966 88 LEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---N-WQYLCVITSLPLLVAVI 141 (237)
Q Consensus 88 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~ 141 (237)
.|.+|++ |+.+.++ .. ...+|..++|.+.+.+. + ++..+++.++..+...+
T Consensus 373 ~~~~~~~-~~~~~~~-~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSF-IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HSSCGGG-HHHHHHH-HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred Hhhcccc-ccchhhH-HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999977 8777776 33 34477777777766543 3 77666665544444333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=1.8e-10 Score=96.90 Aligned_cols=140 Identities=8% Similarity=-0.079 Sum_probs=101.3
Q ss_pred chhhHHHHHHHHhhhhhhhhhhcccccccchHHHH-----HHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHhh
Q psy2966 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALV-----GTNLTGFVAGVATAFA---------STFWQFAICRFFVGL 74 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~ 74 (237)
...++..+...++..++.++.+++.||+|||+... .+.++.+++.++.... .+.+.+.+..++.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 398 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL 398 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 45667778888888899999999999999986544 6666666666555543 266677778889999
Q ss_pred ccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHH-HhhccccC
Q psy2966 75 AFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA--NWQYLCVITSLPLLVAVI-TPWIVPES 149 (237)
Q Consensus 75 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~-~~~~~pe~ 149 (237)
+.+...+....++.|.+|++.|+++.++ ......+|..+++.+..... ++...+...++..++..+ .+++.++.
T Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 399 GEMLISPVGLSVTTKLAPKAFNSQMMSM-WFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHTTTTHHHHHHHHHTTTTCSSSSTHH-HHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999 77888899999988887764 444555555555444433 33344443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.67 E-value=4.6e-08 Score=82.82 Aligned_cols=111 Identities=5% Similarity=-0.076 Sum_probs=79.2
Q ss_pred hHHHHHHHHhhhhhhhhhhccc----ccccc----hHHHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHhh
Q psy2966 12 TLAQAIFFCGAIVGGLVFGWVA----DHFGR----IPALVGTNLTGFVAGVATAFA---------STFWQFAICRFFVGL 74 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~ 74 (237)
++..+...++..++.++.+.+. ||.|+ ++.+..+.++.+++.++..+. .+.+.+.+..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 3444444455555666666554 44443 245667777777777666553 366677778899999
Q ss_pred ccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2966 75 AFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123 (237)
Q Consensus 75 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (237)
+.+...+....++.|..|++.|+++.++ .+....+|..++|.+.+...
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSF-WTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHH-HGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 77788888999888887764
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.53 E-value=3.5e-08 Score=79.93 Aligned_cols=120 Identities=7% Similarity=0.051 Sum_probs=86.3
Q ss_pred CchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHH-HHHHHH--HHHh--hccHHHHHHHHHHHhhccchhhhH
Q psy2966 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLT-GFVAGV--ATAF--ASTFWQFAICRFFVGLAFDNCFTM 82 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~--~~~~--~~~~~~~~~~~~l~g~~~~~~~~~ 82 (237)
+.+.++..+...++..++.++.+++.||+|+|.. .+... ...+.. .... .++.+.+.+..++.|++.+...+.
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 311 (375)
T 2gfp_A 234 SMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL 311 (375)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence 3567788888889999999999999999988432 22222 111111 1122 236666777788899998988999
Q ss_pred HhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHH
Q psy2966 83 MYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVI 131 (237)
Q Consensus 83 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~ 131 (237)
...+..|..| ++|+++.++ .+....+|..++|.+.+.+. +|...+..
T Consensus 312 ~~~~~~~~~p-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 312 ATSGAMEPFP-FLAGTAGAL-VGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp THHHHHTHHH-HHHHHHHHH-HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cccchHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999998 899999999 77778888888877766553 34444443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=52.57 E-value=3 Score=18.35 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.5
Q ss_pred hhhcccccccchHH
Q psy2966 28 VFGWVADHFGRIPA 41 (237)
Q Consensus 28 ~~g~l~dr~Grr~~ 41 (237)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35778889999863
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.64 E-value=71 Score=23.00 Aligned_cols=22 Identities=5% Similarity=0.150 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhhhhhccccccc
Q psy2966 16 AIFFCGAIVGGLVFGWVADHFG 37 (237)
Q Consensus 16 ~~~~~~~~~~~~~~g~l~dr~G 37 (237)
.-+.+|..+++.+.|++.||..
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~ 121 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLK 121 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555566666666666654
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.40 E-value=70 Score=15.44 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=5.8
Q ss_pred hhccccChH
Q psy2966 143 PWIVPESAR 151 (237)
Q Consensus 143 ~~~~pe~p~ 151 (237)
..+.+|+|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 345688875
Done!