RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2966
(237 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 159 bits (405), Expect = 4e-46
Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 6/222 (2%)
Query: 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
+ VC L Q+ FF G ++G VFG+++D FGR L+ + L V+GV TAF+
Sbjct: 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179
Query: 62 FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY 121
+ F + R VG+ + +L E++ R V + I +FF+L LLP +AY+
Sbjct: 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL-IQVFFSLGLVLLPLVAYF 238
Query: 122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
+ +W++L + SLP + + W VPES RWL+SQGR++EA+ I++R KIN K KL
Sbjct: 239 IPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGK----KL 294
Query: 182 YQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223
++ + K+YS LDLFRTP LR T L+++
Sbjct: 295 PAEVLSLSLEKDLSS-SKKQYSFLDLFRTPNLRKTTLCLMML 335
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 85.1 bits (211), Expect = 3e-19
Identities = 50/207 (24%), Positives = 71/207 (34%), Gaps = 31/207 (14%)
Query: 21 GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGL----AF 76
G G L FG +AD GR L+ + L V + A A+ Q I RF GL
Sbjct: 64 GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123
Query: 77 DNCFTMMYILVLEYVGPSWRTFVA-------NMSIAIFFTLAASLLPWIAYYVANWQYLC 129
N LV EY +R + A+ LA L+P W+ L
Sbjct: 124 PNLNA----LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-----WRSLF 174
Query: 130 VI-TSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKET 188
+ PLL+ ++ +PES +LVS+ +I N +
Sbjct: 175 YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVR--------RIVNAIAPQMQAEAQSAL 226
Query: 189 CQRQAKQEIDGKRYSVLDLFRTPRLRN 215
+ K KR LF+ R
Sbjct: 227 --PEQKATQGTKRSVFKALFQGKTARI 251
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 6 AQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQF 65
+L A+F G ++G ++FGW+AD G + L A + + +
Sbjct: 282 FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLL 341
Query: 66 AICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123
+ G + + +Y L+ + + R +I I L A + P +A Y+
Sbjct: 342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGI-GRLGAIIGPILAGYLL 398
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 73.1 bits (180), Expect = 5e-15
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 16 AIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA--STFWQFAICRFFVG 73
+IF G ++G L G + D FGR +L+ N+ + + FA +F+ + R VG
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 74 LA--FDNCFTMMYILVLEYVGPSWRTFVA---NMSIAIFFTLAASLLPWIAYYVANWQY- 127
L + MYI E R + + I +AA + + Y + +
Sbjct: 113 LGVGGISVLVPMYI--SEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWR 170
Query: 128 ----LCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ 183
L + ++ LL+ + +PES RWLV +G+++EA ++ + VD ++ +
Sbjct: 171 IPLGLQFVPAILLLIGL---LFLPESPRWLVLKGKLEEARAVLAKLRG--VSDVDQEIQE 225
Query: 184 QLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223
+ ++ ++ ++ S L+LFR +R + +++
Sbjct: 226 EKDSL-----ERSVEAEKASWLELFRGKTVRQRLLMGVML 260
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 62.7 bits (153), Expect = 1e-11
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFV 72
L + F G +G L+ G+++D FGR L+ L + + AFAS+ W + RF +
Sbjct: 38 LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLL 97
Query: 73 GLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLC 129
GL + L+ E+ P R + + F L A L P + +A W++L
Sbjct: 98 GLGGGALYPAAAALIAEWFPPKERGRALGL-FSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 130 VITSLPLLVAVI 141
+I ++ L+ +
Sbjct: 157 LILAILGLLLAL 168
Score = 42.3 bits (100), Expect = 1e-04
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 5/134 (3%)
Query: 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG-VATAFASTFWQFAICRF 70
L ++F G I+G L+ G ++D GR L+ L G + A A + +
Sbjct: 214 GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL 273
Query: 71 FVGLAFDNCFTMMYILVLEYVGPSWRTFV---ANMSIAIFFTLAASLLPWIAYYVANWQY 127
+G F + L E P R N ++ L L + +
Sbjct: 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL-LDTGGYGG 332
Query: 128 LCVITSLPLLVAVI 141
+ +I + L+A +
Sbjct: 333 VFLILAALALLAAL 346
Score = 32.3 bits (74), Expect = 0.20
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 12 TLAQAIFFCGAIVGGLVFGWVADHFG-RIPALVGTNLTGFVAGVATAFASTFWQFAICRF 70
L A F GA++G L+ G +A+ G R L+ L +A + A+ F
Sbjct: 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFF 185
Query: 71 FVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLL 115
+ + T + + + E +G S +S+ + +LL
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 61.2 bits (149), Expect = 5e-11
Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 20/221 (9%)
Query: 16 AIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG----VATAFASTFWQFAICRFF 71
+IF G +G L GW++D FGR +L+ L FV G AFA + + R
Sbjct: 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL-LFVIGAILMGLAAFALSVEMLIVGRVL 136
Query: 72 VGLAFD--NCFTMMYILVLE------YVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA 123
+G+ + MY+ + + ++ + + I
Sbjct: 137 LGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI---TFGILVAYGFGSGKVSLNNTL 193
Query: 124 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ 183
W+ + +P + + + +PES RWLV +GRV+EA K ++ + K
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEA---RKSLARLRGTSGEDKELL 250
Query: 184 QLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVIC 224
E + E + S LF + R R L + +
Sbjct: 251 DELELIDIKRSIEKRSVQPSWGSLFSSTR-RIRRRLFLGVV 290
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 55.1 bits (133), Expect = 5e-09
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 5/164 (3%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFV 72
L F G + + G ++D FGR L+ L + + FAS+ W + R
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ 95
Query: 73 GLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYL- 128
GL F L+ ++ P R + ++ F L A+L P + +A W+
Sbjct: 96 GLGGGALFPAAAALIADWFPPEERGRALGL-LSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 129 CVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKI 172
++ L LL AV+ ++P +EA + K+
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKL 198
Score = 34.7 bits (80), Expect = 0.027
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 16 AIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICR---FFV 72
+ +G L+ G ++D GR L+ L +A + A S +
Sbjct: 244 GLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLL 303
Query: 73 GLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLP 116
G F + LV + R + + +L +L P
Sbjct: 304 GFGAGLVFPALNALVSDLAPKEERGTASGL-YNTAGSLGGALGP 346
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 54.6 bits (131), Expect = 1e-08
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 4 VCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPAL-VGTNLTGFVAGVATAFASTF 62
+C D+ + I + G +VG +G +AD GR L + ++ GF A F S+F
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFA-----FFSSF 251
Query: 63 WQ----FAICRFFVGLAFDNCFTMMYILVLEYVGP-------SWR--------TFVANMS 103
Q F CR G +++ E++ SW + A M+
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 104 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 163
AI S AY +W+ ++ + P + A+ +PES R+ + G+ DEA
Sbjct: 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAW 371
Query: 164 VIMKRFEKIN 173
+I+K N
Sbjct: 372 MILKLIHDTN 381
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 49.2 bits (118), Expect = 6e-07
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Query: 21 GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCF 80
G + G L+ G +AD GR L+ + + +ATA A F + R G+
Sbjct: 62 GLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGAL 121
Query: 81 TMMYILVLEYVGPSWR-TFVANMSIAIFFTLA-ASLLPWIAYYVANWQYLCVITSL-PLL 137
+ L E VGP R T V+ M + F A AS++ +A A W+++ + + PLL
Sbjct: 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLL 181
Query: 138 VAVITPWIVPESARWLVSQGRVDEA 162
+ + +PES + + G +
Sbjct: 182 LVPLLMRWLPESRAFAQAAGAGKQR 206
Score = 30.7 bits (70), Expect = 0.60
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFV 72
L Q F G +G L+ G + D ++ + A A A +F + F
Sbjct: 259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318
Query: 73 GL 74
GL
Sbjct: 319 GL 320
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 48.5 bits (116), Expect = 9e-07
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 21 GAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAF------------ASTFWQFAIC 68
G I+GG + G+ ++ FGR +L + F++ + +A+ +F I
Sbjct: 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126
Query: 69 RFF----VGLAFDNCFTMMYI-----------LVLEYVGPSWRTF--VANMSIAIF---F 108
R VGLA MYI LV S+ F + + F F
Sbjct: 127 RIIGGIGVGLASMLS--PMYIAEIAPAHIRGKLV------SFNQFAIIFGQLVVYFVNYF 178
Query: 109 TLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKR 168
+ W+ W+Y+ ++P L+ ++ + VPE+ R+L+S+G+ ++A I+
Sbjct: 179 IARSGDASWLNTD--GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL-- 234
Query: 169 FEKINNKKVDPKLYQQLKETCQRQAK 194
KI + + Q++K + K
Sbjct: 235 -RKIMGNTLATQALQEIKHSLDHGRK 259
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 43.8 bits (104), Expect = 1e-05
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 4/136 (2%)
Query: 16 AIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLA 75
A + G ++ + G + D FGR P L+ ++ A +S I RF G
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64
Query: 76 FDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVIT 132
L+ + P R VA ++ L L P + +A W+ +
Sbjct: 65 AAFALVAGAALIADIYPPEERG-VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123
Query: 133 SLPLLVAVITPWIVPE 148
++ L A I +
Sbjct: 124 AILALAAFILLAFLLP 139
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 44.9 bits (106), Expect = 1e-05
Identities = 41/160 (25%), Positives = 59/160 (36%), Gaps = 28/160 (17%)
Query: 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPAL--------VGTNLTGFVAGVATAFA 59
D F G GG +FG +AD FGR P + VGT L+G +GV
Sbjct: 52 DMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV----- 106
Query: 60 STFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFT-------LAA 112
+ RF VG+ Y Y SW + + + A + +AA
Sbjct: 107 ---IMLTLSRFIVGMGMAG----EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAA 159
Query: 113 SLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARW 152
+P A W+ + LP+L+ + PES W
Sbjct: 160 YFMPSFA-EAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 43.3 bits (102), Expect = 5e-05
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Query: 24 VGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMM 83
G L+FG D +GR +V + + +A FA + I R +G+ +
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 84 YILVLEYVGPSWRTFVANMSIAIF---FTLAASLLPWIAYYVA-NWQYLCVITSLPLLVA 139
V+E R + + I+ + +AA + + W+ L I+ LP++ A
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181
Query: 140 VITPWIVPESARWLVSQGR 158
+ +PE+ W
Sbjct: 182 LWLRKNIPEAEDWKEKHAG 200
Score = 29.1 bits (65), Expect = 2.3
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 7 QDTLPTLAQA--------------IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVA 52
QD LPT +A GAIVGG VFG++ D GR A V + L G +
Sbjct: 258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLL 317
Query: 53 GV-ATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLA 111
+ A + + FF + + ++ + EY R + +
Sbjct: 318 IIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGG 377
Query: 112 ASLLP 116
A
Sbjct: 378 ALAPI 382
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 38.9 bits (91), Expect = 0.001
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 18 FFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFD 77
+ G G L++G ++D +GR P L+ ++ + A ++ + RF
Sbjct: 49 YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS 108
Query: 78 NCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV---ANWQYLCVITSL 134
+ LV + P + LA ++ P + Y+ +W + SL
Sbjct: 109 AGSVISQALVRDIY-PGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL 167
Query: 135 PLLVAV-ITPWIVPES 149
++ + +I+PE+
Sbjct: 168 AGILLSALIFFILPET 183
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 38.5 bits (90), Expect = 0.002
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 25 GGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMY 84
GGL+ G + D +GR A+V + + V +A FA +W I R +G+ Y
Sbjct: 71 GGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAG----EY 126
Query: 85 ILVLEYVGPSWRTFVANMS-------IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLL 137
YV SW + N + +I +AA + + V W+ L I LP++
Sbjct: 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV-PVWGWRALFFIGILPII 185
Query: 138 VAVITPWIVPESARW 152
A+ +PE+ W
Sbjct: 186 FALWLRKNLPEAEDW 200
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 37.6 bits (88), Expect = 0.004
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFF 71
TL+ I G +G L +G +AD FGR P ++G L +A VA A A T Q RF
Sbjct: 31 TLSAYIL--GFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL 88
Query: 72 VGLAFDNCFTMMYILVLEYVGPSWRTFVANMS-IAIFFTLAASLLPWIAYYVANW----Q 126
GLA ++ L+ + F MS + + T+A L P I ++ W
Sbjct: 89 HGLAAAAASVVINALMRDMF--PKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHA 146
Query: 127 YLCVITSLPLLVAVITPWIVPES 149
V+ +L A + + +PE+
Sbjct: 147 IFWVLALAAILAAALVFFFIPET 169
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 37.6 bits (88), Expect = 0.004
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 9 TLPTLAQAI--FFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFA 66
+ Q I + G +G + + R L+G V+ + +A A +F
Sbjct: 46 SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL 105
Query: 67 ICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFT 109
+ R GLA +++ L V P R ++A+ FT
Sbjct: 106 LARALAGLAHGVFWSIAAALAARLVPPGKRG----RALALVFT 144
Score = 29.9 bits (68), Expect = 1.2
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFF 71
+L F +G L+ G +AD R + L T ++ F
Sbjct: 250 SLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFL 309
Query: 72 VGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIF 107
G AF + L + P ++++A F
Sbjct: 310 WGFAF-SPALQGLQTRLARLAPDAADLAGSLNVAAF 344
>gnl|CDD|234359 TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All
members of the seed alignment for this model are
asparate-alanine anti-transporters (AspT) encoded next
to the gene for aspartate 4-decarboxylase (AspD), which
converts asparate to alanine, releasing CO2. The
exchange of Asp for Ala is electrogenic, so the
AspD/AspT system confers a proton-motive force. This
transporter contains two copies of the AspT/YidE/YbjL
antiporter duplication domain (TIGR01625).
Length = 562
Score = 36.9 bits (86), Expect = 0.006
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 21 GAIVGGLVFGWVAD---HFGRIPA-----LVGTNLTGFVAGVATAFASTFWQ 64
GA++ GLVFGW+ FG IP+ L L F+A V +
Sbjct: 420 GALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVT 471
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 36.9 bits (86), Expect = 0.007
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 12/176 (6%)
Query: 16 AIFFCGAIVGGLVFGWVADHFG-RIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGL 74
+ F G +VG GW+ D FG R V + G G AFA + I R +G
Sbjct: 36 SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTG-LQAFAGAYVSLYILRVLLGA 94
Query: 75 AFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQYLCVI 131
A F IL++ P+ A L + + ++ +WQ+ +I
Sbjct: 95 AE-APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153
Query: 132 TSLP--LLVAVITPWIV--PESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ 183
+ + + +I P+ A+WL VV E+ PK YQ
Sbjct: 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTE--EEKYIVVGGLLAEQQGKGPSTPKKYQ 207
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 34.3 bits (79), Expect = 0.043
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 24 VGGLVFGWVADHFG-RIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTM 82
+ V G V+D R+ +G L + + F+++ W A G+ +
Sbjct: 45 ISKFVMGSVSDRSNPRVFLPIGLILCA-IVNLFFGFSTSLWVMAALWALNGIFQGMGWPP 103
Query: 83 MYILVLEYVGPSWR-TFVANMSIAIFFT---LAASLLPWIAYYVAN-WQY-----LCVIT 132
V ++ S R T+V+ + + L +L IA + W + + +I
Sbjct: 104 CGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163
Query: 133 SLPLLV 138
SL +
Sbjct: 164 SLICFL 169
>gnl|CDD|227641 COG5336, COG5336, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 116
Score = 32.4 bits (74), Expect = 0.064
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 19 FCGAIVGGLVFGWVADHF-GRIP-ALVGTNLTGFVAGV 54
F I+ G GW+ D F G P L+ L GF AGV
Sbjct: 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 33.8 bits (78), Expect = 0.067
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFV 72
+A +++ G L G +AD GR P + +A + + A T F RF
Sbjct: 42 IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ 101
Query: 73 GLAFDNCFTM 82
G+ C+ +
Sbjct: 102 GIGAGCCYVV 111
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 32.9 bits (76), Expect = 0.12
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 7 QDTLPTLAQAI------FFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAG-VATAFA 59
Q L T A A+ F G +G L++G ++D +GR P L+ L+ F G + +
Sbjct: 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLL-AGLSLFALGSLGMLWV 91
Query: 60 STFWQFAICRFF 71
+ Q + RF
Sbjct: 92 ESAAQLLVLRFV 103
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 32.6 bits (75), Expect = 0.16
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 20 CGAIVGGL---VFGWVADHFGRIPALVGTNLTGFVAGV----ATAFASTFWQFAICRFFV 72
I+ + + G ++D GR P L+ + + V A + +F F +
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGM 322
Query: 73 GLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA 119
L M + E R A+++ + + P+IA
Sbjct: 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA 369
Score = 29.2 bits (66), Expect = 2.2
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 16 AIFFCGAIVGGLVFGWVADHFGRIPALV--------GTNLTGFVAGVATAFASTFWQFAI 67
A F +G +VFG D GR LV GT L G + AT +
Sbjct: 42 AAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLL 101
Query: 68 CRFFVGLAFDNCFTMMYILVLEYVGPSWRTF-----VANMSIAIFFTLAASLL 115
R G + + + + EY P R F + + LL
Sbjct: 102 ARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL 154
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 32.6 bits (75), Expect = 0.18
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 19 FCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA---TAFASTFWQFAICRFFVGLA 75
G+I L G V D +G G+ + A + S+ F RFF+G +
Sbjct: 81 VSGSIFSRLAMGPVCDLYG---PRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFS 137
Query: 76 FDN 78
Sbjct: 138 LAT 140
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 32.5 bits (74), Expect = 0.19
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 23 IVGGLVFGWV----ADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDN 78
+ GG+ W+ +D GR P L+ L +A AT F ++ QF I RF G +
Sbjct: 61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI-- 118
Query: 79 CF--TMMYILVLEYVG 92
CF T+ Y+ V E G
Sbjct: 119 CFIATVGYVTVQEAFG 134
>gnl|CDD|214016 cd12923, iSH2_PI3K_IA_R, Inter-Src homology 2 (iSH2) helical domain
of Class IA Phosphoinositide 3-kinase Regulatory
subunits. PI3Ks catalyze the transfer of the
gamma-phosphoryl group from ATP to the 3-hydroxyl of the
inositol ring of D-myo-phosphatidylinositol (PtdIns) or
its derivatives. They play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation, and apoptosis. They
are classified according to their substrate specificity,
regulation, and domain structure. Class IA PI3Ks are
heterodimers of a p110 catalytic (C) subunit and a
p85-related regulatory (R) subunit. The R subunit
down-regulates PI3K basal activity, stabilizes the C
subunit, and plays a role in the activation downstream
of tyrosine kinases. All R subunits contain two SH2
domains that flank an intervening helical domain (iSH2),
which binds to the N-terminal adaptor-binding domain
(ABD) of the catalytic subunit. In vertebrates, there
are three genes (PIK3R1, PIK3R2, and PIK3R3) that encode
for different Class IA PI3K R subunits.
Length = 152
Score = 31.0 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 160 DEAVVIMKRFEKINNKKVD-PKLYQQLKETCQRQAKQEIDGKR 201
E + K+ ++IN + +D + Y +L E + QEI KR
Sbjct: 3 VEKLA--KKLKEINKEYLDKSREYDELYEKYNK-LSQEIQLKR 42
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 31.6 bits (72), Expect = 0.33
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 21 GAIVGGL------VFGWVADHFGR-----IPALVGTNLTGFVAGVATAFASTFWQFAICR 69
G +VGGL F W+AD FGR AL+GT L+ F +A S FW
Sbjct: 292 GLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGT-LSAFPFFMALEAQSIFWIVFFSI 350
Query: 70 FFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIA-----YYVAN 124
+A D + + E G S+R A + + + P+IA Y+ +
Sbjct: 351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGS 410
Query: 125 WQYLCVITSLPLLVAVITPW 144
W + + L++ +T
Sbjct: 411 WHSVAIYLLAGCLISAMTAL 430
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 31.0 bits (71), Expect = 0.50
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
+V L ++ I AI+G ++ W+A FG+ + L + V F
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309
Query: 62 --FWQFAICRFFVGLAFDNCFTMMYILV 87
W F + G+ + + ++
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAML 337
>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein;
Provisional.
Length = 381
Score = 30.8 bits (70), Expect = 0.61
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 6 AQDTLPT----LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
AQ+ LPT + + +F G +VG L+ G+V G + +L
Sbjct: 34 AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVG 93
Query: 62 FWQFAICRFFVGLA 75
FW + RF G+
Sbjct: 94 FWSWLAWRFVAGIG 107
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 30.8 bits (70), Expect = 0.67
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 5/122 (4%)
Query: 17 IFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGF--VAGVATAFASTFWQFAIC---RFF 71
I AI+ L F F + A A+ R F
Sbjct: 786 IGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRGRPF 845
Query: 72 VGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVI 131
+ + + L++ + F+ +++ IF SL W+ L ++
Sbjct: 846 LSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLLYIV 905
Query: 132 TS 133
S
Sbjct: 906 VS 907
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 30.8 bits (69), Expect = 0.67
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Query: 12 TLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFF 71
L ++ G V L+ G + D FGR P ++ T++ G V + A+ F
Sbjct: 81 GLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTL 140
Query: 72 VGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVA---NWQ-- 126
+G+A L + + + F+ + ++ P+ +A NW+
Sbjct: 141 LGVAAGPAGASP--LFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWI 198
Query: 127 -YLCVITSLPLLVAVITPWIVPESARWL 153
Y+ +I S + V +I W P S L
Sbjct: 199 FYIYIIMS-AIAVLLIIIWYHPPSFAQL 225
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 30.4 bits (69), Expect = 0.71
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVA-GVATAFASTFWQFAICRFF 71
A F GA++G L+ G + +F R+ + G +A V F F + F
Sbjct: 251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA 310
Query: 72 VGLA 75
+G+
Sbjct: 311 IGVG 314
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 30.3 bits (69), Expect = 0.82
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 8 DTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAS----TFW 63
+ L G ++G +++ + FG+ + L V + F
Sbjct: 271 ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI 330
Query: 64 QFAICRFFVGLAF 76
A+ VG
Sbjct: 331 VVALIIAGVGTGI 343
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 29.9 bits (68), Expect = 1.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 23 IVGGLVFGW----VADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDN 78
+ GG+ W ++D GR P ++ + +A A + QF + RF G+
Sbjct: 58 LAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGL-- 115
Query: 79 CF 80
CF
Sbjct: 116 CF 117
Score = 28.0 bits (63), Expect = 4.3
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQ 64
L Q F I G L + + +L+ L VAG+ A +T
Sbjct: 255 LLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS 305
>gnl|CDD|224744 COG1831, COG1831, Predicted metal-dependent hydrolase (urease
superfamily) [General function prediction only].
Length = 285
Score = 29.3 bits (66), Expect = 1.9
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 139 AVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKE 187
AV+ P VP R ++ +G + E V +I+ + + ++Y E
Sbjct: 243 AVLGPKTVPRRTREILEKGDLTEEDV-----YRIHVENPE-RVYGIELE 285
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 29.3 bits (66), Expect = 1.9
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFV 72
+A AI +FG + + AL+ + + + + F+
Sbjct: 355 IAIFSSSMIAIALLYLFGGSYNSEIALIALLSSFSALVLLRKMSRRSDILKS----GLFL 410
Query: 73 GLAFDNCFTMMYILVLEY-VGPSWRTFVANMSIAIFFTLAASLL 115
L M+ +L L + SW + + A L + +L
Sbjct: 411 ALM-----NMLLLLSLIFAFTLSWYDALQDAIFAFLSGLLSGIL 449
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 29.3 bits (66), Expect = 2.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGR 38
G + G L FGW+AD GR
Sbjct: 60 AVNGSASIGTLAGQLFFGWLADKLGR 85
>gnl|CDD|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily.
This superfamily has two main branches. One branch
contains a tetrapeptide transporter demonstrated
experimentally in three different species of yeast. The
other family contains EspB of Myxococcus xanthus, a
protein required for normal rather than delayed
sporulation after cellular aggregation; its role is
unknown but is compatible with transport of a signalling
molecule. Homology between the two branches of the
superfamily is seen most easily at the ends of the
protein. The central regions are poorly conserved within
each branch and may not be homologous between branches.
Length = 606
Score = 28.9 bits (65), Expect = 2.3
Identities = 23/153 (15%), Positives = 46/153 (30%), Gaps = 18/153 (11%)
Query: 41 ALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLA--------------FDNCFTMMYIL 86
A T + + F+ +F + FF G F + YI
Sbjct: 179 ANGWTIARNLLRVLLKYFSVSFLWSFVSWFFPGFTAFQTFGGLGSGSIGFGWQQSSAYIG 238
Query: 87 VLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIV 146
+ P + + F + +L + + A+ I S + + +
Sbjct: 239 S-GLITPFTVGLNILLGFVLAFGIVLPILYYKNTWPAD---ADPIDSSSTIDSTGVRYNS 294
Query: 147 PESARWLVSQGRVDEAVVIMKRFEKINNKKVDP 179
+AR + D+ V ++ R E + K
Sbjct: 295 VGTARRDHYKLGRDDHVRLLSRDEDLKVKNYKE 327
>gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase
and UDPGlcNAc pyrophosphorylase enzymes. This family
includes UDP-Glucose Pyrophosphorylase (UDPase) and
UDPGlcNAc pyrophosphorylase enzymes. The two enzymes
share significant sequence and structure similarity.
UDP-Glucose Pyrophosphorylase catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
Glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans .
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase
(UAP) (also named GlcNAc1P uridyltransferase), catalyzes
the reversible conversion of UTP and GlcNAc1P from PPi
and UDPGlcNAc, which is a key precursor of N- and
O-linked glycosylations and is essential for the
synthesis of chitin (a major component of the fungal
cell wall) and of the glycosylphosphatidylinositol (GPI)
linker anchoring a variety of cell surface proteins to
the plasma membrane. In bacteria, UDPGlcNAc represents
an essential precursor for both peptidoglycan and
lipopolysaccharide biosynthesis.
Length = 266
Score = 28.3 bits (63), Expect = 3.1
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 169 FEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSV 204
FEKIN K + Q K + +
Sbjct: 72 FEKINQKNSYVITFMQGKLPLKNDDDARDPHNKTKC 107
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 28.4 bits (64), Expect = 3.8
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICR--- 69
L Q FF G + L G + G +V L + G A+ FW A +
Sbjct: 52 LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIV-LGLLLYAVG-----AALFWPAASSKSYG 105
Query: 70 FFVGLAF 76
FF+ F
Sbjct: 106 FFLVALF 112
Score = 28.0 bits (63), Expect = 5.3
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 18 FFCGAIVGG----LVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAI 67
AIVGG + G +AD FG + L ++ + A + +
Sbjct: 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRL 416
>gnl|CDD|224040 COG1115, AlsT, Na+/alanine symporter [Amino acid transport and
metabolism].
Length = 452
Score = 28.3 bits (64), Expect = 3.8
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 88 LEYVGPSW-RTFVANMSIAIFFTLAASLLPWIAYYVANWQYLC 129
SW FVA IA+F ++L W Y N ++L
Sbjct: 343 FSSHLGSWGSYFVA---IALFLFAFTTILGWYYYGEKNIEFLF 382
>gnl|CDD|225350 COG2740, COG2740, Predicted nucleic-acid-binding protein implicated
in transcription termination [Transcription].
Length = 95
Score = 26.6 bits (59), Expect = 4.8
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 167 KRFEKINNKKVDPKLYQQLKETCQRQAKQ 195
K F + KV LY +L +
Sbjct: 63 KLFSRALKAKVSDSLYDELIQLLAELEPP 91
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 27.6 bits (61), Expect = 5.5
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 14/158 (8%)
Query: 9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAIC 68
T+ LA +F+ ++ G+ + G + G + +A AT FA+ +
Sbjct: 43 TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLL 102
Query: 69 RFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV------ 122
R VG+A + F +L L + P++ AN I + +L ++ Y+
Sbjct: 103 RILVGIA-EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161
Query: 123 ---ANWQYLCVITSLPLLVAVITPWI----VPESARWL 153
WQ+L ++ P ++ + W P+ A+WL
Sbjct: 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWL 199
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 27.8 bits (62), Expect = 5.6
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 13 LAQAIFFCGAIVGGLVFGWVADHFGRIPALVG-----TNLTGFVAGVATAFASTFWQFAI 67
L Q+ GAIVGG+ G+V A+ + + F G A F W A+
Sbjct: 98 LLQSNILVGAIVGGVYLGFV--FSAGAGAIEAYIEKVSRRSNFEYGKARMFGCVGW--AL 153
Query: 68 CRFFVGLAF 76
C G+ F
Sbjct: 154 CASIAGILF 162
>gnl|CDD|223004 PHA03173, PHA03173, UL37 tegument protein; Provisional.
Length = 1028
Score = 28.1 bits (63), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 QDTLPTLAQAIFFCGAIVGGLVFGWVADHFGR 38
+ AQ + C A+VGG+VFG + + +G
Sbjct: 412 EGPALDDAQQVVGCVAVVGGVVFG-LLESYGP 442
>gnl|CDD|217355 pfam03074, GCS, Glutamate-cysteine ligase. This family represents
the catalytic subunit of glutamate-cysteine ligase (E.C.
6.3.2.2), also known as gamma-glutamylcysteine
synthetase (GCS). This enzyme catalyzes the rate
limiting step in the biosynthesis of glutathione. The
eukaryotic enzyme is a dimer of a heavy chain and a
light chain with all the catalytic activity exhibited by
the heavy chain (this family).
Length = 365
Score = 27.4 bits (61), Expect = 6.7
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 24/99 (24%)
Query: 123 ANWQY--LCVITSLPLLVAVITP----WIVPESARWLVSQGRVDEAVVIMKRFEKINNKK 176
A + Y L I + L ++ TP ++ + RWLV VD+
Sbjct: 27 ARYLYDQLAPICPIFLALSAATPFFRGYLADQDVRWLVISASVDD--------------- 71
Query: 177 VDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRN 215
+ ++ + K I RY +D++ + N
Sbjct: 72 ---RTREERGLVPLKNNKFHISKSRYDSIDVYISKCKPN 107
>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This
family contains uncharacterized integral membrane
proteins.
Length = 771
Score = 27.5 bits (62), Expect = 7.7
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 104 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRV 159
I L ++L + + W+ + +L +++A++ + P LV Q V
Sbjct: 248 ILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYP----ALVQQFVV 299
>gnl|CDD|225027 COG2116, FocA, Formate/nitrite family of transporters [Inorganic
ion transport and metabolism].
Length = 265
Score = 27.2 bits (61), Expect = 7.7
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 19 FCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVA-----TAFASTFWQFAICRFFVG 73
+ G ++G L + G G FV GVA F F + +C + V
Sbjct: 115 YLGNLIGALFVALLFHLSGFNLTANGQWGL-FVLGVAEHKLHHTFLEAFAKGILCNWLVC 173
Query: 74 LAFDNCFT---------MMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVAN 124
LA ++ + + V+ +V + VANM + + + + L W + + N
Sbjct: 174 LAVWMSYSAKDGAAKIFAIILPVMLFVASGFEHSVANMFMIPWAAVFSGALTWADFILKN 233
Query: 125 W 125
Sbjct: 234 L 234
>gnl|CDD|221295 pfam11893, DUF3413, Domain of unknown function (DUF3413). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 250
amino acids in length. This domain is found associated
with pfam00884.
Length = 253
Score = 27.2 bits (61), Expect = 7.9
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 53 GVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAA 112
G S F+ F + L + L ++ P R AI TL
Sbjct: 49 GWLYLLVSLIGHFSFLAFALYLLV--------LFPLSFIIPPRRLL--RGLAAIIATLGL 98
Query: 113 SLL 115
+LL
Sbjct: 99 TLL 101
>gnl|CDD|225817 COG3278, CcoN, Cbb3-type cytochrome oxidase, subunit 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 482
Score = 27.0 bits (60), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 104 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLL 137
I F T+ P I YVANW Y I ++ +L
Sbjct: 146 IVFFGTILKRKEPHI--YVANWFYGAFIVTIAML 177
>gnl|CDD|227209 COG4872, COG4872, Predicted membrane protein [Function unknown].
Length = 394
Score = 27.1 bits (60), Expect = 9.4
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 8/125 (6%)
Query: 27 LVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTF--------WQFAICRFFVGLAFDN 78
L W +L +L G+A + S W + + +
Sbjct: 137 LFLAWGLGVSFMAYSLRSNSLAIMAIGLAQIWLSLAVRHMPLISWLLFVPLAYSCRSISI 196
Query: 79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLV 138
F +L+ V P F + AI F+L L Y + L L
Sbjct: 197 FFLAALLLLFSDVAPWVTRFALALHPAILFSLFDLLFLTGNYQPLAVNLALIAIGLVLFA 256
Query: 139 AVITP 143
A
Sbjct: 257 ASFLW 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.142 0.467
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,600,688
Number of extensions: 1225898
Number of successful extensions: 2431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2359
Number of HSP's successfully gapped: 250
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.6 bits)