RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2966
         (237 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 21/185 (11%), Positives = 40/185 (21%), Gaps = 11/185 (5%)

Query: 13  LAQAIFFCGAIVGGLVFGWVADHFGR----IPALVGTNLTGFVAGVATAFASTFWQFAIC 68
            A +           + G V+D           L+         G      S+     + 
Sbjct: 63  FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122

Query: 69  RFFVGLAFDNCFTMMYILVLEYVGPSWRT-------FVANMSIAIFFTLAASLLPWIAYY 121
            F  G      +      ++ +     R           N+   I   L    + W   +
Sbjct: 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 182

Query: 122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
            A          L  L A       P+S      +   ++         +         +
Sbjct: 183 HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM 242

Query: 182 YQQLK 186
              L 
Sbjct: 243 QYVLP 247


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 15/165 (9%), Positives = 37/165 (22%), Gaps = 8/165 (4%)

Query: 13  LAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFV 72
           +  A     +++   +FG ++D  G    L+       V                     
Sbjct: 47  IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106

Query: 73  GLAFDNCFTMMYILVLEYVGPSW--------RTFVANMSIAIFFTLAASLLPWIAYYVAN 124
            +         +      V              F              + +  I + + N
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166

Query: 125 WQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRF 169
                + +   L++AV+  +   ++         V          
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK 211


>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
           {Escherichia coli [TaxId: 562]}
          Length = 77

 Score = 25.9 bits (57), Expect = 1.2
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 178 DPKLYQQLKETCQRQAKQEIDGKRYSVL 205
           D KL+ +L++  +  A +  +   Y V 
Sbjct: 3   DRKLFAKLRKLRKSIADES-NVPPYVVF 29


>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 26.5 bits (58), Expect = 2.6
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 166 MKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNIT 217
           M R  +    + +P+ + ++  T +      ++   Y VL++ R P    IT
Sbjct: 213 MIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKIT 264


>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
           helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 25.2 bits (55), Expect = 3.1
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 175 KKVDPKLYQQLKETCQRQAKQE 196
           ++    LY +L E  Q+ A + 
Sbjct: 9   QETQIVLYGKLVEARQKHANKM 30


>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 233

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 2   NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA 41
           N++       TLA  I+  G   G L    VA   GRI  
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAM 221


>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
           {Azotobacter vinelandii [TaxId: 354]}
          Length = 229

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 3   WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA 41
           ++   D   T    ++  G +V G +    A   G + A
Sbjct: 180 FIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVA 218


>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 233

 Score = 24.8 bits (53), Expect = 8.1
 Identities = 6/40 (15%), Positives = 11/40 (27%)

Query: 2   NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPA 41
             +   D   +    I   G +  G +    A+  G    
Sbjct: 183 GRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAV 222


>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 347

 Score = 25.0 bits (54), Expect = 9.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 170 EKINNKKVDPKLYQQLKETCQRQAKQEI 197
           E + + KV P LY+QL++ C+   + +I
Sbjct: 37  ENLCSHKVSPMLYKQLRQACEDHVQAQI 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0415    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 948,958
Number of extensions: 43453
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 25
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.2 bits)