BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2967
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)
Query: 1 MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
MELTL G Q+S G T V SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 23 MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 66
Query: 60 VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
VTIK+WDIGGQPRFRS +YM+DAAD +K+EASRNELH L++K
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 119
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)
Query: 1 MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
MELTL G Q+S G T V SGQF++DMIPTVGFNMRKITKGN
Sbjct: 23 MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 66
Query: 60 VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
VTIK+WDIGGQPRFRS +YMVDAAD +K+EAS+NELH L++K
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)
Query: 1 MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
MELTL G Q+S G T V SGQF++DMIPTVGFNMRKITKGN
Sbjct: 32 MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 75
Query: 60 VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
VTIK+WDIGGQPRFRS +YMVDAAD +K+EAS+NELH L++K
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 128
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 93 ELHALI 98
ELH +I
Sbjct: 411 ELHRII 416
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 93 ELHALI 98
ELH +I
Sbjct: 102 ELHRII 107
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 93 ELHALI 98
ELH +I
Sbjct: 89 ELHRII 94
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 93 ELHALI 98
ELH +I
Sbjct: 89 ELHRII 94
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 41 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
Query: 93 ELHALI 98
ELH +I
Sbjct: 101 ELHRII 106
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 93 ELHALI 98
ELH +I
Sbjct: 89 ELHRII 94
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GG + R I++VD AD D+++ +R
Sbjct: 31 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 90
Query: 93 ELHALI 98
ELH +I
Sbjct: 91 ELHRII 96
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GG + R I++VD AD D+++ +R
Sbjct: 42 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 93 ELHALI 98
ELH +I
Sbjct: 102 ELHRII 107
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GG + R I++VD AD D+++ +R
Sbjct: 32 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 91
Query: 93 ELHALI 98
ELH +I
Sbjct: 92 ELHRII 97
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRN 92
IPT+GFN+ +T N+ +VWD+GGQ P +R IY+VD+ D D++ S++
Sbjct: 31 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
Query: 93 ELHALIEK 100
EL A++E+
Sbjct: 91 ELVAMLEE 98
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGG----QPRFRS--------IYMVDAADTDKLEASRN 92
IPT+GFN+ +T N+ +VWD+GG +P +R IY+VD+ D D++ S++
Sbjct: 33 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
Query: 93 ELHALIEK 100
EL A++E+
Sbjct: 93 ELVAMLEE 100
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D D++ +R+
Sbjct: 49 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 108
Query: 93 ELHALIEK 100
ELH ++ +
Sbjct: 109 ELHRMLNE 116
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D ++++ +R
Sbjct: 46 IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 93 ELHALIEK 100
ELH +I +
Sbjct: 106 ELHRMINE 113
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 12/67 (17%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRNE 93
PT+GFN+ ++ N+ + VWD+GGQ P +R I++VD+ D D++ + E
Sbjct: 48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107
Query: 94 LHALIEK 100
LH ++++
Sbjct: 108 LHLMLQE 114
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N+ VWD+GGQ + R I++VD+ D ++++ S +
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117
Query: 93 ELHALIEK 100
EL ++++
Sbjct: 118 ELQKMLQE 125
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D D++ +R
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEARE 105
Query: 93 ELHALIEK 100
EL ++ +
Sbjct: 106 ELMKMLNE 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D +++ +R
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 93 ELHALI 98
EL ++
Sbjct: 254 ELMRML 259
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N+ VWD+GGQ R R I++VD+ D ++++ +
Sbjct: 46 IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVAD 105
Query: 93 ELHALI 98
EL ++
Sbjct: 106 ELQKML 111
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D +++ +R
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 93 ELHALIEK 100
EL ++ +
Sbjct: 89 ELMRMLAE 96
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D +++ +R
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 105
Query: 93 ELHALI 98
EL ++
Sbjct: 106 ELMRML 111
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D +++ +R
Sbjct: 45 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 104
Query: 93 ELHALI 98
EL ++
Sbjct: 105 ELMRML 110
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ R RS I++VD+ D ++ +R
Sbjct: 46 IPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE 105
Query: 93 ELHALIEK 100
+ ++ +
Sbjct: 106 VMQRMLNE 113
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ R RS I++VD+ D ++ +R
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 105
Query: 93 ELHALIEK 100
+ ++ +
Sbjct: 106 VMQRMLNE 113
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ R RS I++VD+ D ++ +R
Sbjct: 29 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 88
Query: 93 ELHALIEK 100
+ ++ +
Sbjct: 89 VMQRMLNE 96
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ R RS I+++D+ D ++ +R
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEARE 105
Query: 93 ELHALIEK 100
+ ++ +
Sbjct: 106 VMQRMLNE 113
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT+GFN++ + + +WD+GGQ RS I++VD+AD +++ + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 94 LHALI 98
L +L+
Sbjct: 108 LQSLL 112
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT+GFN++ + + +WD+GGQ RS I++VD+AD +++ + E
Sbjct: 46 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 105
Query: 94 LHALI 98
L +L+
Sbjct: 106 LQSLL 110
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT+GFN++ + + +WD+GGQ RS I++VD+AD +++ + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 94 LHALI 98
L +L+
Sbjct: 108 LQSLL 112
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 12/60 (20%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGG----QPRFRS--------IYMVDAADTDKLEASRN 92
IPT+GFN+ +T N+ +VWD+GG +P +R IY+VD+ D D++ S++
Sbjct: 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT+GFN++ + + +WD+GGQ RS I++VD+AD + + + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRE 107
Query: 94 LHALI 98
L +L+
Sbjct: 108 LQSLL 112
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39 QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
QFS + + PT+G N+ +I N +WDIGGQ RS I +VD+
Sbjct: 40 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 99
Query: 83 DTDKLEASRNELHALI 98
D +++ +R EL+ ++
Sbjct: 100 DRERISVTREELYKML 115
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39 QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
QFS + + PT+G N+ +I N +WDIGGQ RS I +VD+
Sbjct: 41 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 100
Query: 83 DTDKLEASRNELHALI 98
D +++ +R EL+ ++
Sbjct: 101 DRERISVTREELYKML 116
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39 QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
QFS + + PT+G N+ +I N +WDIGGQ RS I +VD+
Sbjct: 35 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 94
Query: 83 DTDKLEASRNELHALI 98
D +++ +R EL+ ++
Sbjct: 95 DRERISVTREELYKML 110
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39 QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
QFS + + PT+G N+ +I N +WDIGGQ RS I +VD+
Sbjct: 35 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 94
Query: 83 DTDKLEASRNELHALI 98
D +++ +R EL+ ++
Sbjct: 95 DRERISVTREELYKML 110
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GG + R I++VD+ D +++ +R
Sbjct: 31 IPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 90
Query: 93 ELHALIEK 100
EL ++ +
Sbjct: 91 ELMRMLAE 98
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 12/62 (19%)
Query: 51 NMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRNELHALI 98
N+ + N++ +VWD+GGQ P +R IY+VD+ D D++ +++EL+AL+
Sbjct: 57 NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 99 EK 100
++
Sbjct: 117 DE 118
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 12/70 (17%)
Query: 41 SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88
SQ+++PT+GF++ K +++ V+D+ GQ R+R+ I+++D++D ++
Sbjct: 48 SQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMV 107
Query: 89 ASRNELHALI 98
++ EL L+
Sbjct: 108 VAKEELDTLL 117
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 2 ELTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQ 39
+L S SQ+++PT+GF++ K +++ +SGQ
Sbjct: 40 KLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT+GFN++ + + +WD+GG RS I++VD+AD +++ + E
Sbjct: 31 PTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 90
Query: 94 LHALI 98
L +L+
Sbjct: 91 LQSLL 95
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 41 SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88
S+ + TVG+N+ KG V V+D+GG +FR I++VD++D +L
Sbjct: 44 SKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLC 103
Query: 89 ASRNELHALIE 99
++E+ A+++
Sbjct: 104 VVKSEIQAMLK 114
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEAS 90
+ PT GFN++ + + VWDIGGQ P +RS IY++D+AD + E +
Sbjct: 45 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 103
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEAS 90
+ PT GFN++ + + VWDIGGQ P +RS IY++D+AD + E +
Sbjct: 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEAS 90
+ PT GFN++ + + VWDIGGQ P +RS IY++D+AD + E +
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT+G N+ +I N +WDIGGQ RS I +VD+ D ++L ++ E
Sbjct: 46 PTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEE 105
Query: 94 LHALI 98
L+ ++
Sbjct: 106 LYRML 110
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGG----QPRFRS--------IYMVDAADTDKLEAS 90
+ PT GFN++ + + VWDIGG +P +RS IY++D+AD + E +
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ +F QD T+G F R + G T+K +WD GQ RFRS+
Sbjct: 46 IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
++ I T+G F +R I+ N T+K +WD GQ RFR+I
Sbjct: 34 YTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTI 74
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 19 FNMRKITKGNVTIWPVPLSGQFSQDMIP-----TVGFNMR----KITKGNVTIKVWDIGG 69
F + + GN + L +F+Q + P T+G + +I V +++WD G
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 70 QPRFRSI 76
Q RFRSI
Sbjct: 85 QERFRSI 91
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + +PT+G + + +G + VWD GQ +F R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + +PT+G + + +G + VWD GQ +F R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 34 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 74
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 24 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 64
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 31 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 71
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 31 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 71
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
++ D I T+G + + ++ V +++WD GQ RFR+I
Sbjct: 33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 34 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 74
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
++ D I T+G + + ++ V +++WD GQ RFR+I
Sbjct: 33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 23 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 37 SGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRSI 76
+G FS+ T+G F M+ +I V +++WD GQ RFR+I
Sbjct: 51 TGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 33 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 73
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 41 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
++ D I T+G + + ++ V +++WD GQ RFR+I
Sbjct: 46 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 86
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 50 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 90
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 58 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 41 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
FS I T+G + + +I V +++WD GQ RFR+I
Sbjct: 34 FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
+PT+ ++T +T +D+GG + R +++VD AD +L S+
Sbjct: 64 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKV 123
Query: 93 ELHALI 98
EL+AL+
Sbjct: 124 ELNALM 129
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+FS D T+G F+ R + G +K +WD G R+R+I
Sbjct: 34 EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 75
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+S F+++ PT+G F +++T T+K +WD GQ RF S+
Sbjct: 24 VSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active
Fragment Of Sec31
Length = 167
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT ++ GN+ +D+GG + R +++VDAAD ++ + +R E
Sbjct: 31 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 90
Query: 94 LHALI 98
L AL
Sbjct: 91 LDALF 95
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+FS D T+G F+ R + G +K +WD G R+R+I
Sbjct: 49 EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
PT ++ GN+ +D+GG + R +++VDAAD ++ + +R E
Sbjct: 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 112
Query: 94 LHALI 98
L AL
Sbjct: 113 LDALF 117
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
+PT+ ++T +T +D+GG + R +++VD AD ++L S+
Sbjct: 51 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 110
Query: 93 ELHALI 98
EL +L+
Sbjct: 111 ELDSLM 116
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
+PT+ ++T +T +D+GG + R +++VD AD ++L S+
Sbjct: 54 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113
Query: 93 ELHALI 98
EL +L+
Sbjct: 114 ELDSLM 119
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 23/79 (29%)
Query: 36 LSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSI---YMVDA------- 81
L+G F I TVG + R + V +++WD GQ RFRS+ Y DA
Sbjct: 36 LAGTF----ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLY 91
Query: 82 -----ADTDKLEASRNELH 95
A D ++A E+H
Sbjct: 92 DVTNKASFDNIQAWLTEIH 110
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+F+ I T+G + + I V +++WD GQ RFR+I
Sbjct: 27 KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+F+ I T+G + + I V +++WD GQ RFR+I
Sbjct: 27 KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRK-ITKGNVTI-KVWDIGGQPRFRSI 76
+F +++ T+G F M+ I G T+ ++WD GQ RFRSI
Sbjct: 52 EFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 40 FSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRSI---YMVDAA 82
F + T+G + T +G V +++WD GQ RFRS+ Y+ D+A
Sbjct: 26 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSA 75
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQD-----MIPTVGFNMR----KITKGNVTIK 63
M T + + + G+ + + +FS+D I T+G + + ++ + ++
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 64 VWDIGGQPRFRSI 76
+WD GQ RFR+I
Sbjct: 61 IWDTAGQERFRTI 73
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+F+ I T+G + + I V +++WD GQ RFR+I
Sbjct: 27 KFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 68
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
+PT+ ++T +T +D+GG + R +++VD AD ++L S+
Sbjct: 45 VPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 104
Query: 93 ELHALI 98
EL +L+
Sbjct: 105 ELDSLM 110
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 27 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86
Query: 80 DA 81
A
Sbjct: 87 QA 88
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 15 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 74
Query: 80 DA 81
A
Sbjct: 75 QA 76
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPRFRSI 76
+F D T+G F + I G V +++WD GQ RFRS+
Sbjct: 34 KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+F+ I T+G + + I V +++WD GQ RFR+I
Sbjct: 31 KFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 72
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+F+ I T+G + + I V +++WD GQ RFR+I
Sbjct: 44 KFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPRFRSI 76
+F D T+G F + I G V +++WD GQ RFRS+
Sbjct: 35 KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 76
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
F+ I T+G + + ++ + +++WD GQ RFR+I
Sbjct: 31 FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 71
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF 73
G T L+G+F + + T+G + + +G + VWD GQ +F
Sbjct: 22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F ++ PT+G F + + GN K +WD GQ RF S+
Sbjct: 47 HFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 88
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 36 LSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR 74
+G+F T+G + R+ I + I++WD GQ RFR
Sbjct: 50 CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR 92
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVG--FNMRKIT-KGN--VTIKVWDIGGQPRFRSI 76
G ++ ++ ++SQ T+G F +++T G+ T++VWD GQ RF+S+
Sbjct: 20 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 40 FSQDMIPTVG--FNMRKIT---KGNVTIKVWDIGGQ 70
F + T+G F +R+IT NVT+++WDIGGQ
Sbjct: 31 FGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 29.6 bits (65), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RFRS+
Sbjct: 56 VTMQIWDTAGQERFRSL 72
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 29.6 bits (65), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 27 GNVTIWPVPLSGQFSQD-----MIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
GN ++ +++ D + TVG F ++ I + + IK +WD GQ R+R+I
Sbjct: 12 GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 36 LSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR 74
+G+F T+G + R+ I + I++WD GQ RFR
Sbjct: 41 CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR 83
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+F + + T+G + + +G + VWD GQ ++ R Y +
Sbjct: 22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYI 81
Query: 80 DA 81
A
Sbjct: 82 QA 83
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RFRS+
Sbjct: 58 VTMQIWDTAGQERFRSL 74
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 58 GNVTIKVWDIGGQPRFRSIYMVDAAD 83
GN+T+ +WD GGQ F Y D
Sbjct: 53 GNMTLNLWDCGGQDVFMENYFTKQKD 78
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RFRS+
Sbjct: 60 VTMQIWDTAGQERFRSL 76
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 25 TKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADT 84
T N +++ VPL QF G++MRK+ G V K P +S+ VD DT
Sbjct: 277 TNFNHSVFDVPLHYQFHAASTQGGGYDMRKLLNGTVVSK------HP-LKSVTFVDNHDT 329
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 69 GQPRFRSIYMVDAADTDKLEASRNELHALIEK 100
G P+ +++Y DA DTD+L + N++ +I++
Sbjct: 4 GSPQCKALYAYDAQDTDELSFNANDIIDIIKE 35
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 29.3 bits (64), Expect = 0.51, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 25 TKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADT 84
T N +++ VPL QF G++MRK+ G V K P +S+ VD DT
Sbjct: 277 TNFNHSVFDVPLHYQFHAASTQGGGYDMRKLLNGTVVSK------HP-LKSVTFVDNHDT 329
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGN-----------VTIKVWDIGGQPR 72
G ++ G+F+ I TVG + R+ + + N + +++WD G R
Sbjct: 23 GKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82
Query: 73 FRSI 76
FRS+
Sbjct: 83 FRSL 86
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRSI 76
F+ + TVG + + T + V +++WD GQ R+R+I
Sbjct: 48 FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 29 VKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSL 73
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 24 VKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 68
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRSI 76
+F D T+G F R +++ + +++WD GQ RFR++
Sbjct: 39 KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ + T+G F R I TIK +WD GQ R+R+I
Sbjct: 44 EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAI 85
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS-------QDMIPTVGFNMR--KITKGNVTIK 63
++P + + I G+ + L QF+ D+ V F R I + ++
Sbjct: 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73
Query: 64 VWDIGGQPRFRSI 76
+WD GQ FRSI
Sbjct: 74 IWDTAGQESFRSI 86
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ + T+G F R I TIK +WD GQ R+R+I
Sbjct: 53 EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAI 94
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 42 QDMIPTVGFNMRKIT--KGNVTIKVWDIGGQPRFRSI 76
D+ V F R IT + +++WD GQ FRSI
Sbjct: 39 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 75
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+ + TVG F ++ + + + IK +WD GQ R+R+I
Sbjct: 47 FTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RF+S+
Sbjct: 56 VTLQIWDTAGQERFKSL 72
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRSI 76
+F+ D T+G F R +I + ++WD GQ R+R+I
Sbjct: 37 EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRSI 76
+F D T+G F R +++ + +++WD GQ RFR++
Sbjct: 54 KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAV 95
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 28 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 72
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 28 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 72
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 39 QFSQDMIPTVG--FNMRKITKG--NVTIKVWDIGGQPRFRS---IYMVDA 81
+F+ I T+G F +K+ G V + +WD GQ RF + IY D+
Sbjct: 30 KFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS 79
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+ GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ + T+G F R I TIK +WD GQ R+R I
Sbjct: 28 NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RF+S+
Sbjct: 57 VTMQIWDTAGQERFQSL 73
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RF+S+
Sbjct: 57 VTMQIWDTAGQERFQSL 73
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 60 VTIKVWDIGGQPRFRSI---YMVDAA 82
+ +++WD GQ RFRS+ Y+ D+A
Sbjct: 55 IRLQLWDTAGQERFRSLIPSYIRDSA 80
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 60 VTIKVWDIGGQPRFRSI 76
VT+++WD GQ RF+S+
Sbjct: 57 VTMQIWDTAGQERFQSL 73
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 58 GNVTIKVWDIGGQPRFRSIYMVDAAD 83
GN T+ +WD GGQ F Y D
Sbjct: 50 GNXTLNLWDCGGQDVFXENYFTKQKD 75
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 19 FNMRKITKGNVTIWPVPLSGQFSQDMI-----PTVGFNMR----KITKGNVTIKVWDIGG 69
F ++ I G+ + L +F+ D TVG + + ++ + +++WD G
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 70 QPRFRSI 76
Q RF SI
Sbjct: 85 QERFNSI 91
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKIT-KGN-VTIKVWDIGGQPRFRSI 76
F ++ T+G F ++ I+ GN + +WD GQ RFR++
Sbjct: 40 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL 80
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 39 QFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPRFRSI 76
+F D T+G F + I G V +++WD G RFRS+
Sbjct: 32 KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSV 73
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 11 QDMIPTVGFNMRKITKGNVT--IWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIG 68
Q +P V + K T G +T + V G Q P + F RK + K+W +
Sbjct: 95 QSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQR--PVI-FVTRKKLVHAIQQKLWKLN 151
Query: 69 GQPRFRSIYMVDAADTDKLEASRNELHALIE 99
G+P + +IY + L A H+L+E
Sbjct: 152 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE 182
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 11 QDMIPTVGFNMRKITKGNVT--IWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIG 68
Q +P V + K T G +T + V G Q P + F RK + K+W +
Sbjct: 88 QSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQR--PVI-FVTRKKLVHAIQQKLWKLN 144
Query: 69 GQPRFRSIYMVDAADTDKLEASRNELHALIE 99
G+P + +IY + L A H+L+E
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 60 VTIKVWDIGGQPRFRSI 76
V +++WD GQ RFRS+
Sbjct: 51 VRLQLWDTAGQERFRSL 67
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 60 VTIKVWDIGGQPRFRSI 76
V +++WD GQ RFRS+
Sbjct: 50 VRLQLWDTAGQERFRSL 66
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMV 79
G T L+G+ + + T+G + + +G + VWD GQ +F R Y +
Sbjct: 27 GKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86
Query: 80 DA 81
A
Sbjct: 87 QA 88
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 60 VTIKVWDIGGQPRFRSI 76
V +++WD GQ RFRS+
Sbjct: 63 VRLQLWDTAGQERFRSL 79
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 60 VTIKVWDIGGQPRFRSI 76
V +++WD GQ RFRS+
Sbjct: 84 VHLQLWDTAGQERFRSL 100
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 40 FSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKL 87
F ++ +PTV N +I + + +WD G P + ++ + D+D +
Sbjct: 53 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 40 FSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKL 87
F ++ +PTV N +I + + +WD G P + ++ + D+D +
Sbjct: 32 FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 27 GNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSIYMVDAAD 83
G + V F ++ +PTV N +I + + +WD G P + ++ + D
Sbjct: 35 GKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 94
Query: 84 TDKL 87
+D +
Sbjct: 95 SDAV 98
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+ + TVG F ++ I + + IK +WD G R+R+I
Sbjct: 33 FTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F ++ PT+G F + + N K +WD GQ RFR++
Sbjct: 30 FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRAL 70
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 19 FN--MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSI 76
FN R+ TK I + + ++ + + + K T GN TI V+D+GG SI
Sbjct: 146 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT-GNRTIAVYDLGGGTFDISI 204
Query: 77 YMVDAADTDK 86
+D D +K
Sbjct: 205 IEIDEVDGEK 214
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 34 VPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81
+P + +PT G T ++ K++D+GGQ R I+ V
Sbjct: 167 IPTQQDVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 226
Query: 82 ADTDKLEASRNELHALIEKL 101
+D D + A E++ + E +
Sbjct: 227 SDYDLVLAEDEEMNRMHESM 246
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDA 81
R+ TK I + + ++ + + + K T GN TI V+D+GG SI +D
Sbjct: 151 RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT-GNRTIAVYDLGGGTFDISIIEIDE 209
Query: 82 ADTDK 86
D +K
Sbjct: 210 VDGEK 214
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 58 GNVTIKVWDIGGQPRFRSIYMVDAADTDK 86
GN TI V+D+GG SI +D D +K
Sbjct: 186 GNRTIAVYDLGGGAFDISIIEIDEVDGEK 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,873,302
Number of Sequences: 62578
Number of extensions: 107226
Number of successful extensions: 488
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 198
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)