Query psy2967
Match_columns 101
No_of_seqs 150 out of 1176
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 22:08:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 2E-27 4.4E-32 151.8 7.1 82 19-100 13-110 (205)
2 KOG0094|consensus 99.9 1.7E-26 3.6E-31 147.6 5.9 80 21-100 28-123 (221)
3 KOG0092|consensus 99.9 1.3E-25 2.8E-30 143.1 9.0 86 15-100 4-106 (200)
4 KOG0079|consensus 99.9 1.4E-25 3.1E-30 138.4 4.0 83 19-101 12-110 (198)
5 KOG0098|consensus 99.9 2.3E-24 5E-29 137.0 6.5 87 14-100 4-107 (216)
6 KOG0080|consensus 99.9 3.6E-24 7.9E-29 133.6 6.6 88 11-98 7-110 (209)
7 KOG0078|consensus 99.9 1.5E-23 3.3E-28 135.3 7.4 85 16-100 13-113 (207)
8 KOG0087|consensus 99.9 1.8E-23 3.9E-28 134.9 6.3 81 20-100 19-115 (222)
9 KOG0394|consensus 99.9 9E-24 2E-28 134.1 3.0 87 14-100 8-110 (210)
10 KOG0086|consensus 99.9 7.1E-23 1.5E-27 127.2 4.4 83 16-98 10-108 (214)
11 KOG0070|consensus 99.9 6.2E-22 1.3E-26 125.5 8.6 95 1-100 1-113 (181)
12 KOG0091|consensus 99.9 6.4E-23 1.4E-27 128.4 3.6 81 19-99 12-109 (213)
13 KOG0081|consensus 99.9 1.6E-22 3.5E-27 126.2 4.5 86 15-100 9-119 (219)
14 cd04120 Rab12 Rab12 subfamily. 99.9 5.3E-22 1.1E-26 129.4 6.5 80 20-99 5-100 (202)
15 cd04133 Rop_like Rop subfamily 99.9 1.1E-21 2.3E-26 125.5 7.7 80 20-99 6-101 (176)
16 KOG0095|consensus 99.9 1.3E-21 2.9E-26 121.2 7.1 81 19-99 11-107 (213)
17 KOG0083|consensus 99.9 8E-22 1.7E-26 120.2 6.0 79 21-99 3-98 (192)
18 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.5E-21 3.2E-26 125.4 7.1 83 18-100 8-106 (182)
19 cd01875 RhoG RhoG subfamily. 99.9 2E-21 4.3E-26 125.3 7.4 81 19-99 7-103 (191)
20 cd04102 RabL3 RabL3 (Rab-like3 99.8 3.5E-21 7.5E-26 125.6 7.3 81 19-99 4-105 (202)
21 cd04131 Rnd Rnd subfamily. Th 99.8 3.9E-21 8.5E-26 123.0 7.3 81 20-100 6-102 (178)
22 cd04128 Spg1 Spg1p. Spg1p (se 99.8 5.7E-21 1.2E-25 122.5 6.9 81 19-99 4-100 (182)
23 cd04121 Rab40 Rab40 subfamily. 99.8 7E-21 1.5E-25 123.0 7.0 82 19-100 10-107 (189)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 9.7E-21 2.1E-25 125.8 7.2 82 19-100 17-114 (232)
25 smart00176 RAN Ran (Ras-relate 99.8 6.6E-21 1.4E-25 124.1 6.2 80 21-100 1-96 (200)
26 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.9E-20 4E-25 119.3 7.5 81 19-99 5-101 (175)
27 PLN03071 GTP-binding nuclear p 99.8 7.2E-20 1.6E-24 120.5 8.5 85 16-100 14-114 (219)
28 KOG0088|consensus 99.8 3.2E-21 6.9E-26 120.4 1.9 79 21-99 19-113 (218)
29 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 5.2E-20 1.1E-24 119.4 7.4 80 20-99 5-101 (201)
30 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3.4E-20 7.5E-25 117.6 6.3 81 20-100 5-101 (170)
31 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5.3E-20 1.1E-24 116.1 6.8 80 20-99 4-95 (164)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 4.6E-20 1E-24 121.8 6.7 81 19-99 5-101 (222)
33 cd04117 Rab15 Rab15 subfamily. 99.8 5E-20 1.1E-24 115.6 6.5 80 20-99 5-100 (161)
34 PF00071 Ras: Ras family; Int 99.8 4.9E-20 1.1E-24 115.1 5.8 82 19-100 3-100 (162)
35 cd04122 Rab14 Rab14 subfamily. 99.8 7.3E-20 1.6E-24 115.1 6.6 80 20-99 7-102 (166)
36 smart00177 ARF ARF-like small 99.8 1.4E-19 3.1E-24 115.2 7.2 82 17-99 15-108 (175)
37 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.2E-19 2.7E-24 115.2 6.7 81 19-99 6-101 (172)
38 cd04136 Rap_like Rap-like subf 99.8 1.2E-19 2.7E-24 113.1 6.2 80 20-99 6-100 (163)
39 KOG0093|consensus 99.8 1.5E-19 3.3E-24 111.6 6.4 80 19-98 25-120 (193)
40 PTZ00369 Ras-like protein; Pro 99.8 2E-19 4.4E-24 115.6 7.1 80 20-99 10-104 (189)
41 cd01871 Rac1_like Rac1-like su 99.8 2.5E-19 5.4E-24 114.0 7.4 81 19-99 5-101 (174)
42 PLN00023 GTP-binding protein; 99.8 2.4E-19 5.2E-24 123.5 7.7 82 19-100 25-135 (334)
43 KOG0393|consensus 99.8 6.7E-19 1.4E-23 113.7 9.3 86 16-101 5-107 (198)
44 cd04119 RJL RJL (RabJ-Like) su 99.8 2.2E-19 4.8E-24 112.1 6.6 81 20-100 5-101 (168)
45 PLN00223 ADP-ribosylation fact 99.8 1.3E-19 2.9E-24 116.0 5.6 81 18-99 20-112 (181)
46 cd04175 Rap1 Rap1 subgroup. T 99.8 2.3E-19 5.1E-24 112.4 6.4 81 19-99 5-100 (164)
47 cd04134 Rho3 Rho3 subfamily. 99.8 3.1E-19 6.7E-24 114.8 7.1 81 20-100 5-101 (189)
48 cd01865 Rab3 Rab3 subfamily. 99.8 2.3E-19 5E-24 112.8 6.1 80 20-99 6-101 (165)
49 cd04144 Ras2 Ras2 subfamily. 99.8 1.9E-19 4E-24 115.9 5.7 80 20-99 4-98 (190)
50 cd04103 Centaurin_gamma Centau 99.8 5.1E-19 1.1E-23 111.2 7.6 80 20-99 5-93 (158)
51 cd00877 Ran Ran (Ras-related n 99.8 4.3E-19 9.2E-24 112.0 7.2 82 19-100 4-101 (166)
52 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.3E-19 7.2E-24 111.8 6.5 79 20-99 5-95 (159)
53 PTZ00133 ADP-ribosylation fact 99.8 1.9E-19 4E-24 115.4 5.3 80 19-99 21-112 (182)
54 cd04110 Rab35 Rab35 subfamily. 99.8 3.7E-19 8.1E-24 115.3 6.4 81 19-99 10-106 (199)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 5.2E-19 1.1E-23 111.0 6.9 80 20-99 7-102 (166)
56 cd04127 Rab27A Rab27a subfamil 99.8 5.6E-19 1.2E-23 112.1 7.0 80 20-99 9-114 (180)
57 smart00174 RHO Rho (Ras homolo 99.8 6.2E-19 1.4E-23 111.3 7.0 80 20-99 3-98 (174)
58 cd04149 Arf6 Arf6 subfamily. 99.8 4.7E-19 1E-23 112.1 6.4 80 19-99 13-104 (168)
59 cd04176 Rap2 Rap2 subgroup. T 99.8 6.6E-19 1.4E-23 110.1 6.8 80 20-99 6-100 (163)
60 cd04124 RabL2 RabL2 subfamily. 99.8 7.5E-19 1.6E-23 110.2 6.9 80 20-99 5-100 (161)
61 cd04109 Rab28 Rab28 subfamily. 99.8 6.6E-19 1.4E-23 115.4 6.8 81 20-100 5-102 (215)
62 cd04126 Rab20 Rab20 subfamily. 99.8 9.4E-19 2E-23 115.5 7.5 79 20-99 5-95 (220)
63 cd04158 ARD1 ARD1 subfamily. 99.8 9.1E-19 2E-23 110.7 7.1 79 20-99 4-94 (169)
64 cd04143 Rhes_like Rhes_like su 99.8 5.1E-19 1.1E-23 118.5 5.9 80 20-99 5-99 (247)
65 cd04116 Rab9 Rab9 subfamily. 99.8 8.9E-19 1.9E-23 110.3 6.7 82 18-99 8-105 (170)
66 cd04138 H_N_K_Ras_like H-Ras/N 99.8 8.2E-19 1.8E-23 108.9 6.5 80 20-99 6-100 (162)
67 cd01867 Rab8_Rab10_Rab13_like 99.8 8.7E-19 1.9E-23 110.3 6.5 80 20-99 8-103 (167)
68 cd04111 Rab39 Rab39 subfamily. 99.8 1.6E-18 3.6E-23 113.4 7.4 82 19-100 6-104 (211)
69 cd04106 Rab23_lke Rab23-like s 99.8 1.7E-18 3.7E-23 108.0 7.1 80 20-99 5-102 (162)
70 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.5E-18 3.3E-23 109.6 6.9 81 20-100 7-104 (170)
71 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.1E-18 2.3E-23 110.3 6.2 79 20-99 4-94 (167)
72 cd04125 RabA_like RabA-like su 99.8 1.3E-18 2.9E-23 111.5 6.5 80 20-99 5-100 (188)
73 cd01866 Rab2 Rab2 subfamily. 99.8 1.6E-18 3.5E-23 109.3 6.7 80 20-99 9-104 (168)
74 cd04140 ARHI_like ARHI subfami 99.8 2.2E-18 4.8E-23 108.3 7.0 80 20-99 6-100 (165)
75 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.4E-18 5.3E-23 107.3 7.0 83 17-99 3-101 (164)
76 cd01868 Rab11_like Rab11-like. 99.8 2.1E-18 4.5E-23 108.0 6.3 81 20-100 8-104 (165)
77 cd01864 Rab19 Rab19 subfamily. 99.8 1.7E-18 3.7E-23 108.6 5.8 80 20-99 8-103 (165)
78 PLN03110 Rab GTPase; Provision 99.8 3.4E-18 7.4E-23 112.2 7.4 82 18-99 15-112 (216)
79 cd04157 Arl6 Arl6 subfamily. 99.8 2.4E-18 5.2E-23 107.2 6.1 80 20-99 4-96 (162)
80 cd04118 Rab24 Rab24 subfamily. 99.8 3.1E-18 6.6E-23 110.0 6.7 80 20-99 5-101 (193)
81 KOG0071|consensus 99.7 4.8E-18 1.1E-22 104.2 7.0 85 11-100 17-113 (180)
82 cd04132 Rho4_like Rho4-like su 99.7 4.1E-18 8.9E-23 108.9 7.0 80 19-98 4-100 (187)
83 smart00173 RAS Ras subfamily o 99.7 3.4E-18 7.3E-23 106.9 6.2 80 20-99 5-99 (164)
84 cd01892 Miro2 Miro2 subfamily. 99.7 5.6E-18 1.2E-22 107.3 7.3 77 21-97 10-103 (169)
85 cd04112 Rab26 Rab26 subfamily. 99.7 3.5E-18 7.7E-23 110.0 6.2 81 20-100 5-102 (191)
86 cd04113 Rab4 Rab4 subfamily. 99.7 3.9E-18 8.4E-23 106.4 6.2 80 20-99 5-100 (161)
87 cd04101 RabL4 RabL4 (Rab-like4 99.7 4.4E-18 9.6E-23 106.4 6.2 80 20-99 5-103 (164)
88 KOG0097|consensus 99.7 1.4E-18 3E-23 107.1 3.5 79 20-98 16-110 (215)
89 cd04142 RRP22 RRP22 subfamily. 99.7 5.4E-18 1.2E-22 110.1 6.4 80 20-99 5-108 (198)
90 cd04130 Wrch_1 Wrch-1 subfamil 99.7 8.5E-18 1.8E-22 106.4 7.1 80 20-99 5-100 (173)
91 cd01861 Rab6 Rab6 subfamily. 99.7 6.4E-18 1.4E-22 105.2 6.2 80 20-99 5-100 (161)
92 KOG0073|consensus 99.7 1.2E-17 2.5E-22 104.6 6.9 84 11-99 16-111 (185)
93 cd04177 RSR1 RSR1 subgroup. R 99.7 9.8E-18 2.1E-22 105.6 6.2 80 20-99 6-100 (168)
94 cd04146 RERG_RasL11_like RERG/ 99.7 9.6E-18 2.1E-22 105.2 5.8 80 20-99 4-99 (165)
95 PTZ00132 GTP-binding nuclear p 99.7 2.4E-17 5.2E-22 107.8 7.8 80 20-99 14-109 (215)
96 cd01873 RhoBTB RhoBTB subfamil 99.7 2E-17 4.3E-22 107.3 7.2 81 19-99 6-116 (195)
97 cd01860 Rab5_related Rab5-rela 99.7 2E-17 4.3E-22 103.2 6.7 82 19-100 5-102 (163)
98 cd01870 RhoA_like RhoA-like su 99.7 2.6E-17 5.5E-22 104.0 6.7 80 20-99 6-101 (175)
99 PLN03118 Rab family protein; P 99.7 5.9E-17 1.3E-21 105.8 8.0 91 6-97 5-112 (211)
100 cd04159 Arl10_like Arl10-like 99.7 2.6E-17 5.6E-22 101.4 5.9 79 21-99 5-95 (159)
101 PF00025 Arf: ADP-ribosylation 99.7 2.1E-17 4.6E-22 105.4 5.6 81 19-100 18-110 (175)
102 PLN03108 Rab family protein; P 99.7 3.2E-17 7E-22 107.2 6.6 81 19-99 10-106 (210)
103 cd04154 Arl2 Arl2 subfamily. 99.7 4E-17 8.6E-22 103.4 6.7 80 19-99 18-109 (173)
104 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.6E-17 7.8E-22 103.9 6.5 79 20-99 20-110 (174)
105 KOG0395|consensus 99.7 7.1E-17 1.5E-21 104.9 7.8 81 19-99 7-102 (196)
106 cd01863 Rab18 Rab18 subfamily. 99.7 5E-17 1.1E-21 101.3 6.7 81 20-100 5-101 (161)
107 smart00175 RAB Rab subfamily o 99.7 4E-17 8.6E-22 101.7 6.1 80 20-99 5-100 (164)
108 cd01862 Rab7 Rab7 subfamily. 99.7 6.2E-17 1.4E-21 101.6 6.5 81 20-100 5-101 (172)
109 cd04135 Tc10 TC10 subfamily. 99.7 9.6E-17 2.1E-21 101.2 7.3 80 20-99 5-100 (174)
110 KOG0075|consensus 99.7 6.8E-17 1.5E-21 99.8 6.4 78 22-99 27-116 (186)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.1E-16 2.5E-21 102.4 6.6 80 19-99 7-103 (183)
112 cd04151 Arl1 Arl1 subfamily. 99.7 1.2E-16 2.5E-21 99.7 6.3 79 20-99 4-94 (158)
113 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.3E-16 2.8E-21 99.4 6.3 79 20-99 4-95 (160)
114 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.5E-16 3.2E-21 99.0 6.2 79 20-99 4-94 (158)
115 cd04114 Rab30 Rab30 subfamily. 99.7 3.3E-16 7.2E-21 98.3 6.4 80 20-99 12-107 (169)
116 smart00178 SAR Sar1p-like memb 99.7 2.6E-16 5.5E-21 100.9 5.9 79 20-99 22-112 (184)
117 cd04160 Arfrp1 Arfrp1 subfamil 99.6 3.1E-16 6.7E-21 98.2 6.0 79 21-99 5-101 (167)
118 cd04123 Rab21 Rab21 subfamily. 99.6 3.9E-16 8.5E-21 96.8 6.3 80 20-99 5-100 (162)
119 PF08477 Miro: Miro-like prote 99.6 3.6E-16 7.8E-21 93.3 5.9 80 19-98 3-103 (119)
120 cd04147 Ras_dva Ras-dva subfam 99.6 2.9E-16 6.4E-21 101.6 5.8 80 20-99 4-98 (198)
121 cd04137 RheB Rheb (Ras Homolog 99.6 2.1E-16 4.7E-21 100.3 5.1 81 20-100 6-101 (180)
122 cd00154 Rab Rab family. Rab G 99.6 3.2E-16 6.9E-21 96.4 5.7 80 20-99 5-100 (159)
123 cd04139 RalA_RalB RalA/RalB su 99.6 2.9E-16 6.4E-21 97.7 5.4 79 21-99 6-99 (164)
124 cd04148 RGK RGK subfamily. Th 99.6 4.6E-16 1E-20 102.5 6.1 80 20-99 5-100 (221)
125 KOG1673|consensus 99.6 3.2E-16 7E-21 97.7 5.0 78 21-98 26-119 (205)
126 cd01893 Miro1 Miro1 subfamily. 99.6 9.5E-16 2E-20 96.5 6.9 80 20-99 5-99 (166)
127 KOG4252|consensus 99.6 1.8E-17 3.9E-22 105.5 -1.8 87 14-100 19-121 (246)
128 cd00157 Rho Rho (Ras homology) 99.6 2.2E-15 4.8E-20 94.5 7.4 81 19-99 4-100 (171)
129 cd00879 Sar1 Sar1 subfamily. 99.6 7.8E-16 1.7E-20 98.6 5.4 80 19-99 23-114 (190)
130 COG1100 GTPase SAR1 and relate 99.6 1.1E-15 2.4E-20 99.7 5.8 81 19-99 9-106 (219)
131 cd04129 Rho2 Rho2 subfamily. 99.6 2.7E-15 5.8E-20 96.3 7.0 81 20-100 6-102 (187)
132 cd00876 Ras Ras family. The R 99.6 2.1E-15 4.6E-20 93.3 5.6 81 20-100 4-99 (160)
133 KOG0074|consensus 99.6 1.1E-14 2.3E-19 89.8 7.6 79 21-100 23-114 (185)
134 cd04155 Arl3 Arl3 subfamily. 99.5 2.5E-14 5.5E-19 90.1 6.6 79 20-99 19-109 (173)
135 KOG0096|consensus 99.5 9.3E-14 2E-18 89.0 6.9 87 14-100 8-111 (216)
136 KOG0072|consensus 99.5 1.6E-13 3.4E-18 84.8 6.1 79 20-99 23-113 (182)
137 cd04105 SR_beta Signal recogni 99.4 1.7E-13 3.7E-18 89.3 5.5 79 20-99 5-101 (203)
138 cd01897 NOG NOG1 is a nucleola 99.4 7E-13 1.5E-17 83.0 7.1 80 20-99 5-109 (168)
139 PTZ00099 rab6; Provisional 99.4 1.6E-12 3.5E-17 83.1 7.2 62 38-99 3-80 (176)
140 cd01898 Obg Obg subfamily. Th 99.4 1.3E-12 2.9E-17 81.8 6.2 79 21-99 6-107 (170)
141 TIGR00231 small_GTP small GTP- 99.4 2.9E-12 6.3E-17 78.2 6.9 80 20-99 6-103 (161)
142 cd04171 SelB SelB subfamily. 99.3 8.3E-13 1.8E-17 82.0 3.9 70 21-90 6-96 (164)
143 cd01881 Obg_like The Obg-like 99.3 3.5E-12 7.5E-17 80.1 5.2 79 21-99 2-108 (176)
144 cd00882 Ras_like_GTPase Ras-li 99.3 5.3E-12 1.2E-16 76.1 4.4 72 21-93 2-90 (157)
145 cd01878 HflX HflX subfamily. 99.3 7.3E-12 1.6E-16 81.1 5.0 83 14-97 41-146 (204)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 1.1E-11 2.3E-16 77.4 5.2 64 21-84 6-86 (168)
147 cd01890 LepA LepA subfamily. 99.3 8E-12 1.7E-16 79.0 4.6 74 21-94 6-113 (179)
148 cd01891 TypA_BipA TypA (tyrosi 99.3 5.6E-12 1.2E-16 81.3 3.8 64 21-84 8-101 (194)
149 KOG0076|consensus 99.3 3.9E-12 8.6E-17 80.6 3.0 82 14-99 20-120 (197)
150 KOG4423|consensus 99.2 3.7E-14 8E-19 90.8 -6.9 83 18-100 28-127 (229)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.2 2.9E-11 6.2E-16 87.0 6.3 76 21-98 209-307 (442)
152 TIGR02528 EutP ethanolamine ut 99.2 1.7E-12 3.7E-17 79.5 0.0 64 20-94 5-84 (142)
153 PRK12299 obgE GTPase CgtA; Rev 99.2 4.9E-11 1.1E-15 83.1 7.0 85 14-99 158-264 (335)
154 TIGR03156 GTP_HflX GTP-binding 99.2 2.3E-11 5.1E-16 85.2 5.2 81 14-95 189-292 (351)
155 cd01879 FeoB Ferrous iron tran 99.2 4.1E-11 8.8E-16 74.1 5.4 67 21-87 2-90 (158)
156 PRK15494 era GTPase Era; Provi 99.1 9.1E-11 2E-15 81.9 5.9 52 20-71 57-111 (339)
157 TIGR02729 Obg_CgtA Obg family 99.1 2.4E-10 5.2E-15 79.5 7.3 83 15-98 158-265 (329)
158 KOG0077|consensus 99.1 2.9E-11 6.3E-16 76.3 2.5 81 14-99 23-115 (193)
159 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.2E-10 2.6E-15 77.6 4.3 78 20-98 4-102 (232)
160 PRK04213 GTP-binding protein; 99.1 3.1E-11 6.8E-16 77.9 1.1 48 20-69 14-61 (201)
161 cd04164 trmE TrmE (MnmE, ThdF, 99.1 5.3E-10 1.1E-14 68.7 6.3 74 20-93 6-102 (157)
162 PRK11058 GTPase HflX; Provisio 99.1 4.8E-10 1E-14 80.4 6.9 80 13-93 196-298 (426)
163 PRK05291 trmE tRNA modificatio 99.1 4E-10 8.6E-15 81.3 5.9 74 21-94 221-317 (449)
164 PRK03003 GTP-binding protein D 99.0 1.1E-09 2.5E-14 79.3 7.5 74 14-88 38-134 (472)
165 cd01894 EngA1 EngA1 subfamily. 99.0 8.8E-10 1.9E-14 67.8 5.3 69 21-89 3-94 (157)
166 TIGR00491 aIF-2 translation in 99.0 7.2E-10 1.6E-14 82.2 5.6 78 13-91 3-115 (590)
167 PRK12297 obgE GTPase CgtA; Rev 99.0 1.7E-09 3.8E-14 77.5 7.1 83 16-99 160-267 (424)
168 PRK00454 engB GTP-binding prot 99.0 8.9E-10 1.9E-14 70.6 5.2 56 14-70 24-80 (196)
169 TIGR00436 era GTP-binding prot 99.0 1.2E-09 2.7E-14 73.9 6.0 68 21-88 6-96 (270)
170 KOG3883|consensus 99.0 1.3E-09 2.7E-14 68.3 5.2 75 19-93 13-106 (198)
171 PRK00093 GTP-binding protein D 99.0 1.9E-09 4.1E-14 77.1 6.7 80 15-95 2-106 (435)
172 PRK03003 GTP-binding protein D 98.9 2.3E-09 5E-14 77.7 6.2 77 20-97 216-318 (472)
173 TIGR01393 lepA GTP-binding pro 98.9 1.3E-09 2.7E-14 81.0 4.8 75 21-95 9-117 (595)
174 cd01896 DRG The developmentall 98.9 2.9E-09 6.3E-14 70.9 6.1 65 21-85 6-91 (233)
175 cd01889 SelB_euk SelB subfamil 98.9 9.1E-10 2E-14 70.9 3.1 68 21-88 6-108 (192)
176 TIGR03598 GTPase_YsxC ribosome 98.9 2.8E-09 6.1E-14 67.9 4.8 56 13-70 17-74 (179)
177 cd00881 GTP_translation_factor 98.9 2.5E-09 5.5E-14 67.7 4.6 67 21-87 5-101 (189)
178 TIGR00437 feoB ferrous iron tr 98.9 3.2E-09 6.9E-14 78.9 5.7 52 22-73 1-54 (591)
179 PRK05306 infB translation init 98.9 3.9E-09 8.5E-14 80.4 6.2 79 11-90 287-382 (787)
180 PF09439 SRPRB: Signal recogni 98.9 8.9E-10 1.9E-14 70.9 2.3 78 21-99 9-104 (181)
181 PRK12296 obgE GTPase CgtA; Rev 98.8 9.8E-09 2.1E-13 74.9 6.4 77 21-97 165-266 (500)
182 TIGR00475 selB selenocysteine- 98.8 3.6E-09 7.8E-14 78.5 3.7 70 21-90 6-95 (581)
183 TIGR00487 IF-2 translation ini 98.8 7.9E-09 1.7E-13 76.7 5.5 77 13-90 86-180 (587)
184 cd01895 EngA2 EngA2 subfamily. 98.8 1.7E-08 3.6E-13 62.8 6.2 71 20-90 7-103 (174)
185 cd04163 Era Era subfamily. Er 98.8 1.2E-08 2.5E-13 62.9 5.2 64 21-84 9-95 (168)
186 PRK09518 bifunctional cytidyla 98.8 1.7E-08 3.7E-13 76.4 6.7 69 14-84 275-367 (712)
187 PRK04004 translation initiatio 98.8 1E-08 2.2E-13 76.1 5.3 79 12-91 4-117 (586)
188 TIGR03594 GTPase_EngA ribosome 98.8 2.3E-08 5E-13 71.4 6.7 72 20-91 177-274 (429)
189 cd00880 Era_like Era (E. coli 98.8 2.2E-08 4.7E-13 60.9 5.6 71 21-91 2-95 (163)
190 PF01926 MMR_HSR1: 50S ribosom 98.8 3.4E-08 7.5E-13 58.7 6.2 52 20-71 4-58 (116)
191 smart00010 small_GTPase Small 98.8 7.5E-09 1.6E-13 61.5 3.2 65 20-98 5-71 (124)
192 TIGR03594 GTPase_EngA ribosome 98.7 2.5E-08 5.5E-13 71.2 6.2 67 20-86 4-93 (429)
193 CHL00189 infB translation init 98.7 1.7E-08 3.7E-13 76.5 5.4 77 13-90 243-340 (742)
194 cd01876 YihA_EngB The YihA (En 98.7 1E-08 2.2E-13 63.4 3.5 50 21-71 5-56 (170)
195 PRK09518 bifunctional cytidyla 98.7 1.8E-08 3.8E-13 76.3 5.1 71 21-91 456-552 (712)
196 PRK00089 era GTPase Era; Revie 98.7 2.5E-08 5.4E-13 68.1 5.4 63 21-83 11-96 (292)
197 cd04167 Snu114p Snu114p subfam 98.7 2.8E-08 6.1E-13 65.0 4.9 69 21-89 6-112 (213)
198 COG2229 Predicted GTPase [Gene 98.7 4.1E-08 9E-13 62.8 5.3 82 14-96 9-115 (187)
199 cd01899 Ygr210 Ygr210 subfamil 98.7 4E-08 8.6E-13 68.3 5.6 50 21-70 4-79 (318)
200 cd04168 TetM_like Tet(M)-like 98.7 2.7E-08 5.8E-13 66.5 3.9 67 21-87 5-103 (237)
201 PRK13351 elongation factor G; 98.7 3.6E-08 7.7E-13 74.4 5.0 73 21-93 14-118 (687)
202 PRK12298 obgE GTPase CgtA; Rev 98.7 7E-08 1.5E-12 68.7 6.0 79 21-99 165-268 (390)
203 PRK12317 elongation factor 1-a 98.6 7.7E-08 1.7E-12 68.9 5.4 67 17-83 7-119 (425)
204 PF02421 FeoB_N: Ferrous iron 98.6 4.3E-08 9.3E-13 61.8 3.6 66 21-86 6-93 (156)
205 cd01850 CDC_Septin CDC/Septin. 98.6 1.1E-07 2.4E-12 64.8 5.9 72 19-97 8-93 (276)
206 COG0486 ThdF Predicted GTPase 98.6 6E-08 1.3E-12 69.6 4.5 71 14-84 213-309 (454)
207 PRK09554 feoB ferrous iron tra 98.6 1.3E-07 2.8E-12 72.2 6.4 64 21-86 9-100 (772)
208 PRK10218 GTP-binding protein; 98.6 1.5E-07 3.3E-12 70.3 6.1 65 21-85 11-105 (607)
209 PRK00093 GTP-binding protein D 98.6 2.6E-07 5.7E-12 66.2 7.0 71 20-90 178-274 (435)
210 cd04169 RF3 RF3 subfamily. Pe 98.6 5.7E-08 1.2E-12 66.0 3.3 65 21-85 8-108 (267)
211 PRK15467 ethanolamine utilizat 98.5 1.7E-08 3.7E-13 63.4 0.5 60 20-88 6-81 (158)
212 TIGR00483 EF-1_alpha translati 98.5 6.4E-08 1.4E-12 69.4 3.2 67 21-87 13-124 (426)
213 cd04170 EF-G_bact Elongation f 98.5 1.2E-07 2.6E-12 64.1 4.0 70 21-90 5-106 (268)
214 KOG1707|consensus 98.5 1E-07 2.2E-12 70.0 3.5 86 14-99 8-108 (625)
215 PF05783 DLIC: Dynein light in 98.5 3.2E-07 6.9E-12 66.7 6.0 79 19-100 29-130 (472)
216 KOG0090|consensus 98.5 6.8E-07 1.5E-11 58.8 6.8 81 13-98 40-136 (238)
217 PRK05433 GTP-binding protein L 98.5 1.8E-07 4E-12 69.8 4.6 74 21-94 13-120 (600)
218 cd04104 p47_IIGP_like p47 (47- 98.5 2.3E-07 5E-12 60.1 4.0 52 20-71 6-63 (197)
219 cd01852 AIG1 AIG1 (avrRpt2-ind 98.5 8.9E-07 1.9E-11 57.2 6.7 52 21-72 6-61 (196)
220 cd04166 CysN_ATPS CysN_ATPS su 98.4 1.7E-07 3.7E-12 61.2 3.3 64 21-84 5-113 (208)
221 TIGR01394 TypA_BipA GTP-bindin 98.4 4.9E-07 1.1E-11 67.4 5.0 76 21-97 7-112 (594)
222 COG1084 Predicted GTPase [Gene 98.4 1.5E-06 3.3E-11 60.3 6.6 86 14-100 168-278 (346)
223 cd01853 Toc34_like Toc34-like 98.4 1.6E-06 3.5E-11 58.4 6.5 59 15-73 31-92 (249)
224 PRK10512 selenocysteinyl-tRNA- 98.3 6.3E-07 1.4E-11 67.1 3.9 70 21-90 6-96 (614)
225 cd01888 eIF2_gamma eIF2-gamma 98.3 4.9E-07 1.1E-11 58.9 2.6 24 60-83 83-118 (203)
226 TIGR00991 3a0901s02IAP34 GTP-b 98.3 2.8E-06 6.1E-11 58.9 6.2 54 19-72 42-98 (313)
227 cd01859 MJ1464 MJ1464. This f 98.3 5.2E-07 1.1E-11 56.2 2.4 50 19-69 105-155 (156)
228 cd01885 EF2 EF2 (for archaea a 98.3 8.7E-07 1.9E-11 58.8 3.4 69 21-89 6-114 (222)
229 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 5.8E-07 1.3E-11 55.3 2.1 49 20-70 88-138 (141)
230 PRK09602 translation-associate 98.2 5.6E-06 1.2E-10 59.2 6.6 50 21-70 7-82 (396)
231 PF00009 GTP_EFTU: Elongation 98.2 3.4E-06 7.4E-11 54.1 4.5 64 21-84 9-106 (188)
232 PRK00741 prfC peptide chain re 98.2 2.6E-06 5.5E-11 62.9 4.3 65 21-85 16-116 (526)
233 COG3596 Predicted GTPase [Gene 98.2 9.4E-07 2E-11 60.1 1.7 60 13-72 37-99 (296)
234 COG1159 Era GTPase [General fu 98.2 2.3E-06 4.9E-11 58.7 3.5 63 21-83 12-97 (298)
235 TIGR00485 EF-Tu translation el 98.1 3.3E-06 7.1E-11 60.2 4.4 63 21-83 18-110 (394)
236 KOG3886|consensus 98.1 1.9E-06 4.1E-11 57.6 2.2 66 20-85 9-95 (295)
237 TIGR00490 aEF-2 translation el 98.1 3E-06 6.5E-11 64.5 3.5 63 21-83 25-121 (720)
238 cd01886 EF-G Elongation factor 98.1 6.1E-06 1.3E-10 56.2 4.6 64 21-84 5-100 (270)
239 COG1160 Predicted GTPases [Gen 98.1 7.4E-06 1.6E-10 58.9 4.9 63 21-83 9-95 (444)
240 KOG1423|consensus 98.1 1E-05 2.2E-10 56.0 5.3 51 21-71 78-131 (379)
241 cd01883 EF1_alpha Eukaryotic e 98.0 2.5E-06 5.4E-11 56.2 2.1 31 54-84 71-113 (219)
242 TIGR00484 EF-G translation elo 98.0 6.8E-06 1.5E-10 62.3 4.7 69 21-89 16-116 (689)
243 TIGR03680 eif2g_arch translati 98.0 3.6E-06 7.9E-11 60.2 3.0 25 59-83 79-115 (406)
244 TIGR00503 prfC peptide chain r 98.0 5.3E-06 1.1E-10 61.3 3.7 64 21-84 17-116 (527)
245 KOG1489|consensus 98.0 1.1E-05 2.3E-10 56.1 4.9 79 14-97 196-303 (366)
246 PRK04000 translation initiatio 98.0 4.4E-06 9.6E-11 59.9 3.1 24 60-83 85-120 (411)
247 KOG1191|consensus 98.0 8E-06 1.7E-10 59.4 4.2 52 21-72 274-328 (531)
248 PRK12740 elongation factor G; 98.0 7.7E-06 1.7E-10 61.7 4.4 71 21-91 1-103 (668)
249 PLN03126 Elongation factor Tu; 97.9 6.6E-06 1.4E-10 60.1 2.9 71 14-84 79-180 (478)
250 COG1160 Predicted GTPases [Gen 97.9 3.6E-05 7.8E-10 55.5 6.4 54 19-72 182-238 (444)
251 cd01856 YlqF YlqF. Proteins o 97.9 8.2E-06 1.8E-10 51.7 2.9 49 20-70 120-170 (171)
252 PF04548 AIG1: AIG1 family; I 97.9 3.4E-05 7.4E-10 50.6 5.7 51 20-70 5-59 (212)
253 KOG3905|consensus 97.9 3E-05 6.4E-10 54.4 5.3 79 19-100 56-157 (473)
254 cd01884 EF_Tu EF-Tu subfamily. 97.9 1.4E-05 3E-10 52.0 3.3 63 21-83 8-100 (195)
255 COG1163 DRG Predicted GTPase [ 97.9 2.8E-05 6.2E-10 54.2 4.7 75 21-95 69-165 (365)
256 cd01855 YqeH YqeH. YqeH is an 97.9 7E-06 1.5E-10 52.7 1.7 20 20-39 132-151 (190)
257 PRK12736 elongation factor Tu; 97.8 3.4E-05 7.4E-10 55.1 4.7 63 21-83 18-110 (394)
258 KOG0705|consensus 97.8 8.3E-05 1.8E-09 55.1 6.6 83 14-97 28-121 (749)
259 cd04165 GTPBP1_like GTPBP1-lik 97.8 3.7E-05 8E-10 51.0 4.4 22 21-42 5-26 (224)
260 cd01858 NGP_1 NGP-1. Autoanti 97.8 1.3E-05 2.7E-10 50.1 2.0 48 20-69 107-156 (157)
261 cd00066 G-alpha G protein alph 97.8 8.2E-05 1.8E-09 51.8 6.2 56 44-99 145-222 (317)
262 TIGR00993 3a0901s04IAP86 chlor 97.8 0.00012 2.7E-09 55.4 7.4 56 17-72 120-178 (763)
263 PRK12735 elongation factor Tu; 97.8 1.5E-05 3.3E-10 56.9 2.5 70 15-84 11-111 (396)
264 cd04178 Nucleostemin_like Nucl 97.8 2.1E-05 4.5E-10 50.3 2.9 50 18-69 120-171 (172)
265 COG0370 FeoB Fe2+ transport sy 97.7 6.4E-05 1.4E-09 56.5 5.1 65 21-86 9-96 (653)
266 smart00275 G_alpha G protein a 97.7 0.00016 3.5E-09 50.8 6.9 56 44-99 168-245 (342)
267 TIGR03596 GTPase_YlqF ribosome 97.7 3.5E-05 7.7E-10 52.5 3.3 51 18-70 121-173 (276)
268 PLN00043 elongation factor 1-a 97.7 1E-05 2.2E-10 58.6 0.6 30 54-83 79-120 (447)
269 PRK09563 rbgA GTPase YlqF; Rev 97.7 5.1E-05 1.1E-09 52.0 3.7 52 18-71 124-177 (287)
270 PRK12739 elongation factor G; 97.6 0.00022 4.8E-09 54.3 6.1 65 21-85 14-110 (691)
271 CHL00071 tufA elongation facto 97.6 6.1E-05 1.3E-09 54.0 2.9 69 15-83 11-110 (409)
272 KOG1707|consensus 97.6 0.0002 4.4E-09 53.2 5.5 78 16-93 426-517 (625)
273 cd01900 YchF YchF subfamily. 97.6 0.0001 2.2E-09 50.4 3.7 51 21-71 4-73 (274)
274 PRK12288 GTPase RsgA; Reviewed 97.6 7E-05 1.5E-09 52.8 3.0 52 20-74 210-271 (347)
275 PF00735 Septin: Septin; Inte 97.6 5.7E-05 1.2E-09 51.8 2.5 53 19-71 8-74 (281)
276 PTZ00258 GTP-binding protein; 97.5 0.00033 7.1E-09 50.2 6.2 51 21-71 27-96 (390)
277 COG0218 Predicted GTPase [Gene 97.5 7.2E-05 1.6E-09 48.8 2.0 47 21-70 30-80 (200)
278 TIGR02034 CysN sulfate adenyly 97.5 0.00012 2.6E-09 52.5 3.4 63 21-83 6-115 (406)
279 PTZ00141 elongation factor 1- 97.4 0.00012 2.7E-09 53.1 2.7 63 21-83 13-120 (446)
280 PRK12289 GTPase RsgA; Reviewed 97.4 0.00011 2.5E-09 51.8 2.5 53 19-74 176-238 (352)
281 PRK05506 bifunctional sulfate 97.4 0.00013 2.9E-09 54.9 2.9 63 21-83 30-139 (632)
282 COG1161 Predicted GTPases [Gen 97.4 0.00013 2.9E-09 50.9 2.6 51 18-70 135-187 (322)
283 PRK05124 cysN sulfate adenylyl 97.4 0.00023 4.9E-09 52.1 3.8 64 20-83 32-142 (474)
284 PRK09601 GTP-binding protein Y 97.3 0.00087 1.9E-08 47.6 6.4 23 16-39 4-26 (364)
285 PRK00049 elongation factor Tu; 97.3 0.00017 3.6E-09 51.6 2.7 64 21-84 18-111 (396)
286 cd01851 GBP Guanylate-binding 97.3 0.00025 5.3E-09 47.1 3.3 51 21-71 13-71 (224)
287 PF10662 PduV-EutP: Ethanolami 97.3 0.00096 2.1E-08 41.5 5.4 22 20-41 6-27 (143)
288 TIGR00157 ribosome small subun 97.3 0.0002 4.4E-09 48.1 2.5 50 19-72 124-183 (245)
289 PF03193 DUF258: Protein of un 97.2 7.1E-05 1.5E-09 47.5 0.1 21 19-39 39-59 (161)
290 PF05049 IIGP: Interferon-indu 97.2 0.00062 1.3E-08 48.5 4.7 51 21-71 41-97 (376)
291 cd01849 YlqF_related_GTPase Yl 97.2 0.00019 4E-09 44.8 1.8 47 20-69 105-154 (155)
292 PLN03127 Elongation factor Tu; 97.2 0.00042 9E-09 50.4 3.8 69 15-83 60-159 (447)
293 COG5019 CDC3 Septin family pro 97.2 0.0021 4.6E-08 45.5 6.6 80 12-98 20-113 (373)
294 PRK00007 elongation factor G; 97.2 0.00085 1.8E-08 51.2 5.0 64 21-84 16-111 (693)
295 COG1162 Predicted GTPases [Gen 97.1 0.0011 2.4E-08 45.9 4.8 17 21-37 170-186 (301)
296 KOG1424|consensus 97.1 0.00039 8.5E-09 51.1 2.6 54 14-70 314-369 (562)
297 PRK13796 GTPase YqeH; Provisio 97.1 0.00035 7.7E-09 49.5 2.3 20 19-38 164-183 (365)
298 TIGR03597 GTPase_YqeH ribosome 97.0 0.00044 9.6E-09 48.9 2.0 20 19-38 158-177 (360)
299 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.0006 1.3E-08 46.8 2.1 20 20-39 166-185 (287)
300 COG0012 Predicted GTPase, prob 96.9 0.0011 2.3E-08 47.1 3.3 58 15-73 3-80 (372)
301 KOG3887|consensus 96.9 0.0024 5.2E-08 43.4 4.8 63 21-83 33-113 (347)
302 cd01882 BMS1 Bms1. Bms1 is an 96.9 0.0018 3.8E-08 43.0 4.0 69 15-84 39-116 (225)
303 PRK00098 GTPase RsgA; Reviewed 96.8 0.00094 2E-08 46.1 2.5 19 21-39 170-188 (298)
304 COG2262 HflX GTPases [General 96.8 0.0045 9.8E-08 44.5 5.8 77 13-90 191-290 (411)
305 PRK14845 translation initiatio 96.7 0.0035 7.6E-08 49.9 5.0 66 26-91 472-572 (1049)
306 COG0536 Obg Predicted GTPase [ 96.6 0.0059 1.3E-07 43.1 5.3 47 21-70 165-217 (369)
307 KOG1486|consensus 96.6 0.0056 1.2E-07 41.9 4.9 55 12-70 63-119 (364)
308 KOG2655|consensus 96.5 0.0042 9E-08 44.1 4.2 73 17-96 23-108 (366)
309 KOG1491|consensus 96.5 0.0023 5.1E-08 45.1 2.8 60 15-75 21-99 (391)
310 PLN00116 translation elongatio 96.4 0.0015 3.3E-08 50.9 1.7 28 58-85 96-135 (843)
311 PRK10751 molybdopterin-guanine 96.3 0.00088 1.9E-08 43.0 -0.2 23 13-36 5-27 (173)
312 COG0481 LepA Membrane GTPase L 96.3 0.0083 1.8E-07 44.3 4.6 39 56-94 72-122 (603)
313 PF13671 AAA_33: AAA domain; P 96.1 0.0012 2.6E-08 40.1 -0.3 18 19-36 3-20 (143)
314 COG0532 InfB Translation initi 96.1 0.019 4.1E-07 42.5 5.6 71 20-90 10-100 (509)
315 KOG1490|consensus 96.1 0.012 2.6E-07 43.7 4.4 52 20-71 173-226 (620)
316 COG1763 MobB Molybdopterin-gua 96.0 0.0018 4E-08 41.0 0.3 23 14-37 2-24 (161)
317 PF13207 AAA_17: AAA domain; P 96.0 0.0014 3E-08 38.8 -0.6 19 20-38 4-22 (121)
318 PTZ00416 elongation factor 2; 95.9 0.0055 1.2E-07 47.8 2.4 26 59-84 91-128 (836)
319 TIGR00092 GTP-binding protein 95.9 0.0074 1.6E-07 43.0 2.6 20 21-40 8-27 (368)
320 PF00350 Dynamin_N: Dynamin fa 95.9 0.0043 9.3E-08 38.6 1.3 21 20-40 3-23 (168)
321 TIGR00235 udk uridine kinase. 95.8 0.0016 3.6E-08 42.4 -0.8 17 21-37 12-28 (207)
322 KOG0075|consensus 95.8 0.0095 2.1E-07 37.6 2.6 39 3-41 39-77 (186)
323 PF03266 NTPase_1: NTPase; In 95.7 0.0024 5.2E-08 40.7 -0.2 45 22-67 6-52 (168)
324 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0024 5.2E-08 40.5 -0.3 22 14-36 3-24 (188)
325 TIGR02836 spore_IV_A stage IV 95.7 0.0066 1.4E-07 44.2 1.8 18 21-38 23-40 (492)
326 KOG3859|consensus 95.7 0.0085 1.9E-07 41.6 2.2 53 18-70 45-105 (406)
327 PF13401 AAA_22: AAA domain; P 95.6 0.0022 4.7E-08 38.3 -0.7 21 18-38 7-27 (131)
328 PRK07560 elongation factor EF- 95.6 0.007 1.5E-07 46.6 1.8 70 14-84 20-123 (731)
329 PRK14738 gmk guanylate kinase; 95.6 0.004 8.6E-08 40.7 0.3 28 11-38 9-36 (206)
330 COG1116 TauB ABC-type nitrate/ 95.6 0.0021 4.5E-08 43.4 -1.0 17 21-37 35-51 (248)
331 PRK08118 topology modulation p 95.5 0.0026 5.7E-08 40.3 -0.6 19 19-37 5-23 (167)
332 PF02456 Adeno_IVa2: Adenoviru 95.5 0.0063 1.4E-07 42.6 1.2 37 12-48 84-120 (369)
333 COG4108 PrfC Peptide chain rel 95.5 0.011 2.3E-07 43.2 2.3 54 22-75 19-96 (528)
334 COG1117 PstB ABC-type phosphat 95.5 0.0024 5.1E-08 42.6 -0.9 16 21-36 39-54 (253)
335 PF03205 MobB: Molybdopterin g 95.5 0.0027 5.8E-08 39.3 -0.6 18 20-37 5-22 (140)
336 TIGR00073 hypB hydrogenase acc 95.5 0.0032 6.8E-08 41.1 -0.4 24 13-37 21-44 (207)
337 cd02023 UMPK Uridine monophosp 95.5 0.0026 5.6E-08 41.1 -0.8 17 21-37 5-21 (198)
338 PF03029 ATP_bind_1: Conserved 95.4 0.002 4.3E-08 43.2 -1.4 17 21-37 2-18 (238)
339 KOG1532|consensus 95.4 0.0038 8.1E-08 43.2 -0.2 24 14-37 18-41 (366)
340 PF00485 PRK: Phosphoribulokin 95.4 0.0036 7.7E-08 40.4 -0.4 17 21-37 5-21 (194)
341 KOG1547|consensus 95.3 0.046 1E-06 37.3 4.7 72 19-97 50-134 (336)
342 KOG4273|consensus 95.3 0.034 7.5E-07 38.2 4.1 77 19-95 8-102 (418)
343 COG1136 SalX ABC-type antimicr 95.3 0.0033 7.1E-08 42.0 -0.8 19 21-39 37-55 (226)
344 smart00053 DYNc Dynamin, GTPas 95.2 0.071 1.5E-06 35.9 5.5 28 13-41 25-52 (240)
345 PF13191 AAA_16: AAA ATPase do 95.2 0.0034 7.3E-08 39.5 -0.8 23 15-37 24-46 (185)
346 PRK06762 hypothetical protein; 95.2 0.0054 1.2E-07 38.4 0.1 23 15-37 2-24 (166)
347 PRK07261 topology modulation p 95.2 0.004 8.8E-08 39.6 -0.6 18 20-37 5-22 (171)
348 PRK10463 hydrogenase nickel in 95.1 0.0039 8.4E-08 43.1 -0.8 24 13-37 103-126 (290)
349 COG3839 MalK ABC-type sugar tr 95.1 0.0049 1.1E-07 43.5 -0.4 18 21-38 35-52 (338)
350 PF00004 AAA: ATPase family as 95.1 0.0035 7.5E-08 37.2 -1.0 18 21-38 4-21 (132)
351 PF05729 NACHT: NACHT domain 95.1 0.0043 9.2E-08 38.2 -0.6 18 20-37 5-22 (166)
352 COG5192 BMS1 GTP-binding prote 95.1 0.01 2.2E-07 44.9 1.3 22 16-37 70-91 (1077)
353 smart00382 AAA ATPases associa 95.1 0.0041 8.9E-08 36.5 -0.7 22 20-41 7-28 (148)
354 cd02025 PanK Pantothenate kina 95.1 0.0037 8.1E-08 41.4 -0.9 19 17-36 2-20 (220)
355 PRK04040 adenylate kinase; Pro 95.1 0.0052 1.1E-07 39.8 -0.2 23 15-37 2-24 (188)
356 KOG0462|consensus 95.1 0.044 9.5E-07 41.1 4.4 34 57-90 122-167 (650)
357 COG1217 TypA Predicted membran 95.0 0.025 5.3E-07 41.8 3.0 51 25-75 15-83 (603)
358 cd03116 MobB Molybdenum is an 95.0 0.0055 1.2E-07 38.7 -0.3 17 21-37 7-23 (159)
359 COG0563 Adk Adenylate kinase a 95.0 0.0045 9.7E-08 39.8 -0.8 20 19-38 4-23 (178)
360 COG0466 Lon ATP-dependent Lon 95.0 0.0083 1.8E-07 46.0 0.4 21 15-36 351-371 (782)
361 TIGR02322 phosphon_PhnN phosph 94.9 0.0045 9.7E-08 39.2 -0.8 18 20-37 6-23 (179)
362 COG2895 CysN GTPases - Sulfate 94.9 0.096 2.1E-06 37.5 5.6 62 14-75 5-101 (431)
363 PRK10078 ribose 1,5-bisphospho 94.9 0.0043 9.2E-08 39.8 -1.0 18 21-38 8-25 (186)
364 TIGR00150 HI0065_YjeE ATPase, 94.9 0.011 2.4E-07 36.3 0.9 18 21-38 28-45 (133)
365 PRK14737 gmk guanylate kinase; 94.9 0.0069 1.5E-07 39.1 -0.1 23 16-38 5-27 (186)
366 cd00009 AAA The AAA+ (ATPases 94.8 0.0049 1.1E-07 36.6 -0.9 19 20-38 24-42 (151)
367 PF00005 ABC_tran: ABC transpo 94.8 0.0048 1E-07 37.2 -0.9 18 21-38 17-34 (137)
368 PF06414 Zeta_toxin: Zeta toxi 94.8 0.0074 1.6E-07 39.1 -0.1 27 11-37 11-37 (199)
369 PF13173 AAA_14: AAA domain 94.8 0.004 8.8E-08 37.5 -1.3 20 21-40 8-27 (128)
370 COG3842 PotA ABC-type spermidi 94.8 0.0068 1.5E-07 43.0 -0.4 19 21-39 37-55 (352)
371 cd02019 NK Nucleoside/nucleoti 94.8 0.0039 8.5E-08 33.8 -1.3 18 21-38 5-22 (69)
372 KOG0468|consensus 94.7 0.062 1.3E-06 41.4 4.5 70 21-90 134-239 (971)
373 COG1126 GlnQ ABC-type polar am 94.7 0.0053 1.1E-07 41.0 -0.9 19 21-39 34-52 (240)
374 PF07728 AAA_5: AAA domain (dy 94.7 0.0056 1.2E-07 37.1 -0.8 17 21-37 5-21 (139)
375 COG4525 TauB ABC-type taurine 94.7 0.0075 1.6E-07 40.0 -0.3 17 21-37 37-53 (259)
376 PF13555 AAA_29: P-loop contai 94.7 0.0058 1.2E-07 32.8 -0.7 16 21-36 29-44 (62)
377 PF13238 AAA_18: AAA domain; P 94.7 0.0046 9.9E-08 36.6 -1.3 18 21-38 4-21 (129)
378 PF07726 AAA_3: ATPase family 94.7 0.028 6E-07 34.5 2.1 69 22-99 6-88 (131)
379 PF01637 Arch_ATPase: Archaeal 94.6 0.0057 1.2E-07 39.6 -1.0 20 20-39 25-44 (234)
380 PRK08233 hypothetical protein; 94.6 0.0087 1.9E-07 37.7 -0.2 17 21-37 9-25 (182)
381 cd00071 GMPK Guanosine monopho 94.4 0.0063 1.4E-07 37.3 -1.1 18 21-38 5-22 (137)
382 cd00820 PEPCK_HprK Phosphoenol 94.4 0.0075 1.6E-07 35.8 -0.7 16 21-36 21-36 (107)
383 COG0378 HypB Ni2+-binding GTPa 94.4 0.01 2.2E-07 38.8 -0.2 23 15-37 12-35 (202)
384 PF02367 UPF0079: Uncharacteri 94.4 0.027 5.9E-07 34.2 1.6 45 22-67 22-68 (123)
385 PLN02200 adenylate kinase fami 94.2 0.017 3.7E-07 38.6 0.6 25 13-37 41-65 (234)
386 PF03308 ArgK: ArgK protein; 94.2 0.01 2.2E-07 40.4 -0.5 23 14-37 29-51 (266)
387 PRK11545 gntK gluconate kinase 94.1 0.007 1.5E-07 38.2 -1.3 17 21-37 1-17 (163)
388 PRK14495 putative molybdopteri 94.1 0.012 2.6E-07 42.9 -0.3 22 15-37 2-23 (452)
389 PTZ00301 uridine kinase; Provi 94.1 0.011 2.3E-07 39.1 -0.5 21 15-36 4-24 (210)
390 TIGR03263 guanyl_kin guanylate 94.1 0.013 2.7E-07 37.1 -0.2 19 20-38 6-24 (180)
391 PF02263 GBP: Guanylate-bindin 94.1 0.2 4.3E-06 34.0 5.6 58 15-72 20-86 (260)
392 PRK07667 uridine kinase; Provi 94.1 0.011 2.4E-07 38.2 -0.5 22 15-37 18-39 (193)
393 COG1120 FepC ABC-type cobalami 94.0 0.0091 2E-07 40.6 -1.0 17 21-37 34-50 (258)
394 PHA02530 pseT polynucleotide k 94.0 0.016 3.4E-07 39.6 0.1 22 16-37 3-24 (300)
395 TIGR01313 therm_gnt_kin carboh 93.9 0.012 2.6E-07 36.7 -0.6 17 21-37 4-20 (163)
396 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.9 0.01 2.2E-07 38.7 -1.0 18 21-38 36-53 (218)
397 PTZ00088 adenylate kinase 1; P 93.9 0.015 3.2E-07 38.9 -0.2 25 13-37 4-28 (229)
398 PF00448 SRP54: SRP54-type pro 93.8 0.017 3.7E-07 37.6 0.0 22 15-36 1-22 (196)
399 cd03238 ABC_UvrA The excision 93.8 0.011 2.5E-07 37.8 -0.8 16 21-36 27-42 (176)
400 TIGR03015 pepcterm_ATPase puta 93.8 0.014 2.9E-07 39.2 -0.5 20 19-38 47-66 (269)
401 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.011 2.4E-07 37.4 -0.9 19 19-37 3-21 (183)
402 COG0194 Gmk Guanylate kinase [ 93.8 0.016 3.4E-07 37.7 -0.2 20 20-39 9-28 (191)
403 TIGR00960 3a0501s02 Type II (G 93.8 0.011 2.4E-07 38.6 -0.9 18 21-38 35-52 (216)
404 PF00910 RNA_helicase: RNA hel 93.8 0.0087 1.9E-07 35.1 -1.3 17 21-37 4-20 (107)
405 PRK14493 putative bifunctional 93.8 0.015 3.3E-07 39.8 -0.3 21 16-37 3-23 (274)
406 PRK06547 hypothetical protein; 93.8 0.016 3.4E-07 37.1 -0.3 18 20-37 20-37 (172)
407 cd03226 ABC_cobalt_CbiO_domain 93.7 0.011 2.5E-07 38.2 -0.9 18 21-38 32-49 (205)
408 PRK00300 gmk guanylate kinase; 93.7 0.01 2.2E-07 38.3 -1.1 19 20-38 10-28 (205)
409 cd03225 ABC_cobalt_CbiO_domain 93.7 0.011 2.4E-07 38.3 -1.0 18 21-38 33-50 (211)
410 TIGR02315 ABC_phnC phosphonate 93.7 0.012 2.5E-07 39.1 -1.0 18 21-38 34-51 (243)
411 PRK05480 uridine/cytidine kina 93.7 0.016 3.5E-07 37.7 -0.3 17 21-37 12-28 (209)
412 PRK10646 ADP-binding protein; 93.7 0.044 9.5E-07 34.5 1.6 17 22-38 35-51 (153)
413 COG1124 DppF ABC-type dipeptid 93.6 0.012 2.7E-07 39.7 -0.9 19 21-39 39-57 (252)
414 PRK14530 adenylate kinase; Pro 93.6 0.014 3E-07 38.3 -0.7 18 20-37 8-25 (215)
415 TIGR01166 cbiO cobalt transpor 93.6 0.012 2.7E-07 37.6 -0.9 18 21-38 24-41 (190)
416 cd03224 ABC_TM1139_LivF_branch 93.6 0.013 2.8E-07 38.3 -0.9 18 21-38 32-49 (222)
417 cd02024 NRK1 Nicotinamide ribo 93.6 0.013 2.9E-07 38.0 -0.9 18 21-38 5-22 (187)
418 cd03264 ABC_drug_resistance_li 93.5 0.013 2.8E-07 38.1 -1.0 18 21-38 31-48 (211)
419 cd03269 ABC_putative_ATPase Th 93.5 0.013 2.8E-07 38.1 -1.0 18 21-38 32-49 (210)
420 cd03261 ABC_Org_Solvent_Resist 93.5 0.013 2.8E-07 38.7 -1.0 18 21-38 32-49 (235)
421 cd02026 PRK Phosphoribulokinas 93.5 0.014 3.1E-07 39.9 -0.8 16 21-36 5-20 (273)
422 cd03112 CobW_like The function 93.5 0.018 4E-07 36.1 -0.3 18 21-38 6-23 (158)
423 cd03293 ABC_NrtD_SsuB_transpor 93.5 0.013 2.9E-07 38.3 -1.0 18 21-38 36-53 (220)
424 cd02021 GntK Gluconate kinase 93.5 0.016 3.5E-07 35.6 -0.6 17 21-37 5-21 (150)
425 PRK14527 adenylate kinase; Pro 93.4 0.02 4.4E-07 36.8 -0.2 22 15-36 6-27 (191)
426 KOG0733|consensus 93.4 0.015 3.3E-07 44.2 -0.8 25 14-38 221-246 (802)
427 COG1419 FlhF Flagellar GTP-bin 93.4 0.068 1.5E-06 38.6 2.4 17 21-37 209-225 (407)
428 PF00406 ADK: Adenylate kinase 93.4 0.011 2.4E-07 36.5 -1.4 17 21-37 2-18 (151)
429 PRK14532 adenylate kinase; Pro 93.4 0.015 3.3E-07 37.1 -0.8 18 20-37 5-22 (188)
430 TIGR00101 ureG urease accessor 93.4 0.02 4.4E-07 37.3 -0.2 17 21-37 7-23 (199)
431 cd03262 ABC_HisP_GlnQ_permease 93.4 0.014 3.1E-07 37.9 -1.0 18 21-38 32-49 (213)
432 cd03256 ABC_PhnC_transporter A 93.4 0.015 3.2E-07 38.5 -0.9 18 21-38 33-50 (241)
433 TIGR02673 FtsE cell division A 93.3 0.015 3.1E-07 37.9 -1.0 18 21-38 34-51 (214)
434 COG2884 FtsE Predicted ATPase 93.3 0.023 5E-07 37.4 -0.0 21 19-39 32-52 (223)
435 cd03265 ABC_DrrA DrrA is the A 93.3 0.015 3.2E-07 38.1 -1.0 18 21-38 32-49 (220)
436 PF13476 AAA_23: AAA domain; P 93.3 0.019 4.1E-07 36.4 -0.5 16 21-36 25-40 (202)
437 COG0572 Udk Uridine kinase [Nu 93.3 0.02 4.3E-07 38.1 -0.4 21 16-37 10-30 (218)
438 cd03229 ABC_Class3 This class 93.3 0.015 3.2E-07 37.0 -1.0 18 21-38 32-49 (178)
439 TIGR03608 L_ocin_972_ABC putat 93.3 0.015 3.2E-07 37.6 -1.0 18 21-38 30-47 (206)
440 cd03292 ABC_FtsE_transporter F 93.3 0.015 3.3E-07 37.8 -1.0 18 21-38 33-50 (214)
441 cd03235 ABC_Metallic_Cations A 93.2 0.016 3.4E-07 37.7 -0.9 18 21-38 31-48 (213)
442 cd03301 ABC_MalK_N The N-termi 93.2 0.015 3.3E-07 37.8 -1.0 18 21-38 32-49 (213)
443 cd03260 ABC_PstB_phosphate_tra 93.2 0.015 3.2E-07 38.3 -1.1 19 21-39 32-50 (227)
444 cd03222 ABC_RNaseL_inhibitor T 93.2 0.014 3E-07 37.5 -1.2 18 21-38 31-48 (177)
445 cd03259 ABC_Carb_Solutes_like 93.2 0.016 3.4E-07 37.8 -1.0 18 21-38 32-49 (213)
446 PRK06217 hypothetical protein; 93.2 0.024 5.2E-07 36.2 -0.1 18 20-37 6-23 (183)
447 cd01120 RecA-like_NTPases RecA 93.2 0.017 3.8E-07 35.1 -0.7 18 21-38 5-22 (165)
448 cd03263 ABC_subfamily_A The AB 93.2 0.016 3.4E-07 37.9 -1.0 18 21-38 34-51 (220)
449 cd03257 ABC_NikE_OppD_transpor 93.2 0.016 3.5E-07 37.9 -0.9 18 21-38 37-54 (228)
450 cd03219 ABC_Mj1267_LivG_branch 93.2 0.017 3.6E-07 38.2 -0.9 18 21-38 32-49 (236)
451 cd03258 ABC_MetN_methionine_tr 93.1 0.016 3.5E-07 38.2 -1.0 18 21-38 37-54 (233)
452 TIGR02211 LolD_lipo_ex lipopro 93.1 0.016 3.5E-07 37.9 -1.0 18 21-38 37-54 (221)
453 cd01131 PilT Pilus retraction 93.1 0.021 4.5E-07 37.1 -0.5 17 21-37 7-23 (198)
454 cd03218 ABC_YhbG The ABC trans 93.1 0.017 3.6E-07 38.1 -1.0 18 21-38 32-49 (232)
455 PRK15177 Vi polysaccharide exp 93.1 0.022 4.8E-07 37.3 -0.4 18 21-38 19-36 (213)
456 KOG2485|consensus 93.1 0.028 6.1E-07 39.3 0.1 19 19-37 147-165 (335)
457 COG3638 ABC-type phosphate/pho 93.1 0.017 3.6E-07 39.1 -1.0 17 21-37 36-52 (258)
458 cd03296 ABC_CysA_sulfate_impor 93.1 0.017 3.7E-07 38.3 -1.0 18 21-38 34-51 (239)
459 PRK03839 putative kinase; Prov 93.0 0.02 4.3E-07 36.3 -0.6 18 20-37 5-22 (180)
460 PF13521 AAA_28: AAA domain; P 93.0 0.013 2.8E-07 36.6 -1.5 18 21-38 5-22 (163)
461 TIGR01978 sufC FeS assembly AT 93.0 0.018 4E-07 38.1 -0.9 18 21-38 32-49 (243)
462 cd03266 ABC_NatA_sodium_export 93.0 0.018 3.9E-07 37.6 -0.9 17 22-38 38-54 (218)
463 cd03268 ABC_BcrA_bacitracin_re 93.0 0.017 3.8E-07 37.4 -1.0 17 22-38 33-49 (208)
464 cd01124 KaiC KaiC is a circadi 93.0 0.02 4.4E-07 36.2 -0.7 19 20-38 4-22 (187)
465 cd01130 VirB11-like_ATPase Typ 93.0 0.016 3.5E-07 37.2 -1.1 17 21-37 31-47 (186)
466 COG0396 sufC Cysteine desulfur 92.9 0.021 4.5E-07 38.5 -0.7 26 21-49 36-61 (251)
467 KOG0458|consensus 92.9 0.28 6E-06 37.1 5.0 29 55-83 250-290 (603)
468 PRK11248 tauB taurine transpor 92.9 0.018 3.9E-07 38.8 -1.0 18 21-38 33-50 (255)
469 PRK11629 lolD lipoprotein tran 92.9 0.018 3.9E-07 38.1 -1.0 18 21-38 41-58 (233)
470 KOG1533|consensus 92.8 0.061 1.3E-06 36.5 1.4 18 17-34 4-21 (290)
471 cd01428 ADK Adenylate kinase ( 92.8 0.02 4.3E-07 36.5 -0.9 18 20-37 4-21 (194)
472 TIGR03410 urea_trans_UrtE urea 92.8 0.02 4.3E-07 37.7 -0.9 17 22-38 33-49 (230)
473 KOG0082|consensus 92.8 0.37 8E-06 34.4 5.4 41 44-84 179-231 (354)
474 COG0411 LivG ABC-type branched 92.8 0.066 1.4E-06 36.2 1.6 17 21-37 36-52 (250)
475 cd03233 ABC_PDR_domain1 The pl 92.8 0.02 4.4E-07 37.2 -0.8 19 21-39 39-57 (202)
476 COG4608 AppF ABC-type oligopep 92.8 0.03 6.4E-07 38.4 -0.1 17 21-37 45-61 (268)
477 cd03216 ABC_Carb_Monos_I This 92.8 0.027 5.8E-07 35.4 -0.3 17 22-38 33-49 (163)
478 cd03297 ABC_ModC_molybdenum_tr 92.7 0.02 4.3E-07 37.3 -1.0 18 21-38 29-46 (214)
479 PF13479 AAA_24: AAA domain 92.7 0.04 8.6E-07 36.2 0.4 19 17-35 5-23 (213)
480 PRK13541 cytochrome c biogenes 92.7 0.027 5.8E-07 36.3 -0.4 18 21-38 32-49 (195)
481 cd03215 ABC_Carb_Monos_II This 92.7 0.021 4.5E-07 36.5 -0.9 18 21-38 32-49 (182)
482 PRK14531 adenylate kinase; Pro 92.7 0.027 5.8E-07 36.0 -0.4 19 19-37 6-24 (183)
483 smart00763 AAA_PrkA PrkA AAA d 92.7 0.018 3.9E-07 41.0 -1.3 18 21-38 84-101 (361)
484 COG1134 TagH ABC-type polysacc 92.7 0.038 8.3E-07 37.3 0.3 24 21-49 59-82 (249)
485 PF00503 G-alpha: G-protein al 92.7 0.68 1.5E-05 33.1 6.6 55 45-99 220-297 (389)
486 PRK15453 phosphoribulokinase; 92.6 0.03 6.5E-07 38.7 -0.2 22 14-36 5-26 (290)
487 PRK11124 artP arginine transpo 92.6 0.021 4.5E-07 37.9 -1.0 17 22-38 35-51 (242)
488 cd03254 ABCC_Glucan_exporter_l 92.6 0.021 4.6E-07 37.5 -1.0 18 21-38 35-52 (229)
489 TIGR03864 PQQ_ABC_ATP ABC tran 92.6 0.021 4.6E-07 37.8 -1.0 18 21-38 33-50 (236)
490 PRK06696 uridine kinase; Valid 92.6 0.03 6.4E-07 37.0 -0.3 17 21-37 28-44 (223)
491 PRK10908 cell division protein 92.6 0.022 4.7E-07 37.4 -1.0 18 21-38 34-51 (222)
492 PRK14489 putative bifunctional 92.6 0.031 6.6E-07 39.8 -0.3 23 14-37 205-227 (366)
493 TIGR00750 lao LAO/AO transport 92.6 0.03 6.5E-07 38.7 -0.3 23 14-37 34-56 (300)
494 PRK11247 ssuB aliphatic sulfon 92.6 0.022 4.7E-07 38.5 -1.0 18 21-38 44-61 (257)
495 cd03232 ABC_PDR_domain2 The pl 92.6 0.022 4.8E-07 36.6 -0.9 18 21-38 39-56 (192)
496 PRK14267 phosphate ABC transpo 92.6 0.022 4.7E-07 38.1 -1.0 18 21-38 36-53 (253)
497 cd03247 ABCC_cytochrome_bd The 92.6 0.022 4.7E-07 36.2 -1.0 17 22-38 35-51 (178)
498 COG0802 Predicted ATPase or ki 92.5 0.051 1.1E-06 34.1 0.7 17 22-38 32-48 (149)
499 PRK14247 phosphate ABC transpo 92.5 0.022 4.8E-07 38.0 -1.0 18 21-38 35-52 (250)
500 PRK13645 cbiO cobalt transport 92.5 0.023 5E-07 38.9 -1.0 18 21-38 43-60 (289)
No 1
>KOG0084|consensus
Probab=99.94 E-value=2e-27 Score=151.77 Aligned_cols=82 Identities=17% Similarity=0.418 Sum_probs=76.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||+|+.||..+.|.+.|..|+|++++. ++++.++++||||+||+||+. |+|||++
T Consensus 13 iliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT 92 (205)
T KOG0084|consen 13 ILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDIT 92 (205)
T ss_pred EEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcc
Confidence 446999999999999999999999999999999853 678899999999999999998 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
+++||++++.|+.|+.++
T Consensus 93 ~~~SF~~v~~Wi~Ei~~~ 110 (205)
T KOG0084|consen 93 KQESFNNVKRWIQEIDRY 110 (205)
T ss_pred cHHHhhhHHHHHHHhhhh
Confidence 999999999999998764
No 2
>KOG0094|consensus
Probab=99.93 E-value=1.7e-26 Score=147.62 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=74.7
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
+|+.+||||||++||+.+.|...|.+|||+++.. +.+..+.+++|||+|||+|+. |+|||++|+
T Consensus 28 lGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~ 107 (221)
T KOG0094|consen 28 LGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR 107 (221)
T ss_pred EccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc
Confidence 4999999999999999999999999999999853 678889999999999999999 999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
.||++..+|++.++.+
T Consensus 108 ~Sfe~t~kWi~dv~~e 123 (221)
T KOG0094|consen 108 NSFENTSKWIEDVRRE 123 (221)
T ss_pred chHHHHHHHHHHHHhc
Confidence 9999999999998753
No 3
>KOG0092|consensus
Probab=99.93 E-value=1.3e-25 Score=143.05 Aligned_cols=86 Identities=21% Similarity=0.423 Sum_probs=76.0
Q ss_pred ceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EE
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IY 77 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~ 77 (101)
+.+.++ +|+.+||||||+.||..++|.+...||+|.-+.+ +....+++.||||+||++|++ |+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 444555 4999999999999999999999899999977643 455679999999999999988 99
Q ss_pred EEECCChhhHHHHHHHHHHHHHh
Q psy2967 78 MVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|||+++.+||..++.|++++.++
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~ 106 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQ 106 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999865
No 4
>KOG0079|consensus
Probab=99.92 E-value=1.4e-25 Score=138.37 Aligned_cols=83 Identities=22% Similarity=0.433 Sum_probs=75.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||+.+|..+.|..+|..|+|+++. + +.+..++++|||++||++|+. ++|||++
T Consensus 12 lIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVT 91 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 91 (198)
T ss_pred HeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECc
Confidence 34699999999999999999999999999998885 2 668889999999999999988 8999999
Q ss_pred ChhhHHHHHHHHHHHHHhC
Q psy2967 83 DTDKLEASRNELHALIEKL 101 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~l 101 (101)
+.+||.++++|++++.+.+
T Consensus 92 n~ESF~Nv~rWLeei~~nc 110 (198)
T KOG0079|consen 92 NGESFNNVKRWLEEIRNNC 110 (198)
T ss_pred chhhhHhHHHHHHHHHhcC
Confidence 9999999999999998753
No 5
>KOG0098|consensus
Probab=99.91 E-value=2.3e-24 Score=137.03 Aligned_cols=87 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------E
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------I 76 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i 76 (101)
.+.+.+. +|+.|||||+|+.||+.+.|.+.+..|+|+++- .++.+.++++||||+||++|++ |
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 4555554 599999999999999999999999999998873 4789999999999999999988 9
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh
Q psy2967 77 YMVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
+|||+++++||+++..|+.++.++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~ 107 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQH 107 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 6
>KOG0080|consensus
Probab=99.90 E-value=3.6e-24 Score=133.65 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=78.7
Q ss_pred ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce-----------
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS----------- 75 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~----------- 75 (101)
.+.....-+.+|++|||||||+.||+.+.|.+....|+|++++. ++++.+++.||||+||++||.
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34445566778999999999999999999998888889999863 788999999999999999998
Q ss_pred -EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|||++.|++|.++..|++|+-
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld 110 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELD 110 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHH
Confidence 99999999999999999999874
No 7
>KOG0078|consensus
Probab=99.90 E-value=1.5e-23 Score=135.25 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=77.0
Q ss_pred eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
.+-+.+|+++||||+++.||.++.|...+..|+|++++. +++..+.+++|||+||++|+. ++||
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lvy 92 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 92 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEE
Confidence 344557999999999999999999999999999999853 577889999999999999988 9999
Q ss_pred ECCChhhHHHHHHHHHHHHHh
Q psy2967 80 DAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 80 d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|+++..||+++..|++.|-++
T Consensus 93 Ditne~Sfeni~~W~~~I~e~ 113 (207)
T KOG0078|consen 93 DITNEKSFENIRNWIKNIDEH 113 (207)
T ss_pred EccchHHHHHHHHHHHHHHhh
Confidence 999999999999999988764
No 8
>KOG0087|consensus
Probab=99.89 E-value=1.8e-23 Score=134.92 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=76.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||-|+.||..++|..+..+|+|+++.+ ++++.++.+||||+||+||+. ++|||++.
T Consensus 19 liGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr 98 (222)
T KOG0087|consen 19 LIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITR 98 (222)
T ss_pred EeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechh
Confidence 46999999999999999999999999999999864 778899999999999999988 99999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+.+|+++.+|+.|++.|
T Consensus 99 ~~Tfenv~rWL~ELRdh 115 (222)
T KOG0087|consen 99 RQTFENVERWLKELRDH 115 (222)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999876
No 9
>KOG0394|consensus
Probab=99.88 E-value=9e-24 Score=134.06 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=77.7
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EE
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IY 77 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~ 77 (101)
.++.-+..|++|||||||+++|..++|.++|..|||.++.+ ++.+.+.++||||+||++|++ ++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 44555556999999999999999999999999999988743 677789999999999999998 99
Q ss_pred EEECCChhhHHHHHHHHHHHHHh
Q psy2967 78 MVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|||+++++||+++..|.+|++.+
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~q 110 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQ 110 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHh
Confidence 99999999999999999998753
No 10
>KOG0086|consensus
Probab=99.87 E-value=7.1e-23 Score=127.18 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=74.8
Q ss_pred eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
...+.+|+.|.|||+|+++|+.++|.++...|+|+++-. +.++.++++||||+||++|++ ++||
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 344567999999999999999999999999999988842 557889999999999999998 9999
Q ss_pred ECCChhhHHHHHHHHHHHH
Q psy2967 80 DAADTDKLEASRNELHALI 98 (101)
Q Consensus 80 d~~~~~sf~~~~~~~~~i~ 98 (101)
|+++++||+++..|+..+.
T Consensus 90 D~TsrdsfnaLtnWL~DaR 108 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDAR 108 (214)
T ss_pred eccchhhHHHHHHHHHHHH
Confidence 9999999999999998764
No 11
>KOG0070|consensus
Probab=99.87 E-value=6.2e-22 Score=125.52 Aligned_cols=95 Identities=35% Similarity=0.692 Sum_probs=82.5
Q ss_pred CCcccccccc------ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967 1 MELTLSGQFS------QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 74 (101)
Q Consensus 1 m~~~~~~~~~------~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (101)
|++..+..++ +..|.++|+. ++||||+++++..+++.+ +.||+|++++.+..+++++.+||.+||+++|
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD----~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R 75 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLD----AAGKTTILYKLKLGEIVT-TVPTIGFNVETVEYKNISFTVWDVGGQEKLR 75 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEecc----CCCceeeeEeeccCCccc-CCCccccceeEEEEcceEEEEEecCCCcccc
Confidence 6666655544 4456666665 999999999999999985 5999999999999999999999999999888
Q ss_pred e------------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967 75 S------------IYMVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 75 ~------------i~v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
. |||+|.+|++++.++++.+..++.+
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~ 113 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAE 113 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcC
Confidence 7 9999999999999999999988764
No 12
>KOG0091|consensus
Probab=99.87 E-value=6.4e-23 Score=128.39 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=72.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE----E-EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----K-ITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~-~~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
+.+||+.||||||+++|.+++|.+-..||+|+++- + -.+..+++++|||+||++|++ ++|||+
T Consensus 12 ivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvydi 91 (213)
T KOG0091|consen 12 IVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDI 91 (213)
T ss_pred EEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEec
Confidence 45699999999999999999999989999998873 2 246789999999999999998 889999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+|++||+++..|+++..-
T Consensus 92 tnr~sfehv~~w~~ea~m 109 (213)
T KOG0091|consen 92 TNRESFEHVENWVKEAAM 109 (213)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 999999999999998653
No 13
>KOG0081|consensus
Probab=99.86 E-value=1.6e-22 Score=126.23 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=75.3
Q ss_pred ceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E-----------ecCcEEEEEEeeCCCCccce------
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I-----------TKGNVTIKVWDIGGQPRFRS------ 75 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~-----------~~~~~~~~i~D~~G~~~~~~------ 75 (101)
.+..+.+|++||||||+++++..+.|..+...|+|+++++ + ....+.+++|||+||++|++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 3445677999999999999999999999999999999853 1 12348999999999999999
Q ss_pred ------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967 76 ------IYMVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 76 ------i~v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
+++||+++.+||-++.+|+.++..|
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h 119 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH 119 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=5.3e-22 Score=129.41 Aligned_cols=80 Identities=16% Similarity=0.355 Sum_probs=69.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++||..+.|.+.+.||++.++. . ++++.+.+++||++|+++|+. |+|||++|
T Consensus 5 vlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd 84 (202)
T cd04120 5 IIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 84 (202)
T ss_pred EECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC
Confidence 4699999999999999999999999999986653 3 345569999999999998876 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||++++.|++.+.+
T Consensus 85 ~~Sf~~l~~w~~~i~~ 100 (202)
T cd04120 85 KETFDDLPKWMKMIDK 100 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987653
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.86 E-value=1.1e-21 Score=125.54 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=70.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|+++||||||+.+|..+.|.+++.||++..+.. +++..+.+.+||++|+++++. |+|||++++
T Consensus 6 v~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~ 85 (176)
T cd04133 6 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR 85 (176)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH
Confidence 46999999999999999999999999999866642 456679999999999999876 999999999
Q ss_pred hhHHHH-HHHHHHHHH
Q psy2967 85 DKLEAS-RNELHALIE 99 (101)
Q Consensus 85 ~sf~~~-~~~~~~i~~ 99 (101)
+||+++ ..|+.++.+
T Consensus 86 ~Sf~~~~~~w~~~i~~ 101 (176)
T cd04133 86 ASYENVLKKWVPELRH 101 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 999999 689998864
No 16
>KOG0095|consensus
Probab=99.86 E-value=1.3e-21 Score=121.19 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=73.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+-||..|||||+|++||.++-|++....|+|+++ ++ +.+..++++||||+||++||+ |++||++
T Consensus 11 vlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydis 90 (213)
T KOG0095|consen 11 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90 (213)
T ss_pred EEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecc
Confidence 3469999999999999999999999999999876 33 678889999999999999998 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
...||.-+.+|+.+|.+
T Consensus 91 cqpsfdclpewlreie~ 107 (213)
T KOG0095|consen 91 CQPSFDCLPEWLREIEQ 107 (213)
T ss_pred cCcchhhhHHHHHHHHH
Confidence 99999999999999864
No 17
>KOG0083|consensus
Probab=99.86 E-value=8e-22 Score=120.22 Aligned_cols=79 Identities=27% Similarity=0.521 Sum_probs=71.5
Q ss_pred eccCCCcceeeeeccccCcCCC-CCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+|++++|||+|+.||..+.|.. +..+|+|++++. .+.+.+++++|||+||++|++ +++||+.|
T Consensus 3 lgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian 82 (192)
T KOG0083|consen 3 LGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN 82 (192)
T ss_pred cccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc
Confidence 5999999999999999999875 467899999864 567789999999999999998 88999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.||++.+.|+.+|.+
T Consensus 83 kasfdn~~~wlsei~e 98 (192)
T KOG0083|consen 83 KASFDNCQAWLSEIHE 98 (192)
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999999875
No 18
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.86 E-value=1.5e-21 Score=125.42 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=72.1
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
-+.+|+++||||||+.+|..+.|.++|.||++..+. .+++..+.+++|||+|+++|+. |+|||++
T Consensus 8 ivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit 87 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 87 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECC
Confidence 344699999999999999999999999999987764 2556779999999999988765 8999999
Q ss_pred ChhhHHHH-HHHHHHHHHh
Q psy2967 83 DTDKLEAS-RNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~-~~~~~~i~~~ 100 (101)
++.||+++ ..|+.++.+.
T Consensus 88 ~~~Sf~~~~~~w~~~i~~~ 106 (182)
T cd04172 88 RPETLDSVLKKWKGEIQEF 106 (182)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 99999998 7899888653
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.85 E-value=2e-21 Score=125.33 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=70.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|+++||||||+.||..+.|.+.+.||++.++. .++++.+.+++||++|+++|+. |+|||++|
T Consensus 7 ~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~ 86 (191)
T cd01875 7 VVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS 86 (191)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC
Confidence 44699999999999999999999999999997664 2566779999999999999876 89999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
++||+++. .|+.++.+
T Consensus 87 ~~Sf~~~~~~w~~~i~~ 103 (191)
T cd01875 87 PSSYENVRHKWHPEVCH 103 (191)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999997 58877654
No 20
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.85 E-value=3.5e-21 Score=125.59 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=70.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe-------cCcEEEEEEeeCCCCccce------------EE
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT-------KGNVTIKVWDIGGQPRFRS------------IY 77 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~-------~~~~~~~i~D~~G~~~~~~------------i~ 77 (101)
+.+|+++||||||+++|+.+.|.+.+.||+|.++. .+. .+.+.+++||++|+++++. |+
T Consensus 4 vlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIl 83 (202)
T cd04102 4 LVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIIL 83 (202)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEE
Confidence 45799999999999999999999999999996653 222 3568999999999998876 99
Q ss_pred EEECCChhhHHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|||+++++||+++..|+.++++
T Consensus 84 VyDvtn~~Sf~~l~~W~~ei~~ 105 (202)
T cd04102 84 VHDLTNRKSSQNLQRWSLEALN 105 (202)
T ss_pred EEECcChHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=3.9e-21 Score=122.96 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=70.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|+++||||||+++|..+.|...+.||++..+. .+++..+.+.+||++|+++++. |+|||++++
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~ 85 (178)
T cd04131 6 VVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP 85 (178)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCCh
Confidence 4699999999999999999999999999987664 2556779999999999988765 899999999
Q ss_pred hhHHHH-HHHHHHHHHh
Q psy2967 85 DKLEAS-RNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~-~~~~~~i~~~ 100 (101)
+||+++ ..|+.++.+.
T Consensus 86 ~Sf~~~~~~w~~~i~~~ 102 (178)
T cd04131 86 ETLDSVLKKWRGEIQEF 102 (178)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 999996 7899888653
No 22
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.84 E-value=5.7e-21 Score=122.53 Aligned_cols=81 Identities=23% Similarity=0.450 Sum_probs=70.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||++||..+.|.++|.||+|.++. . +++..+.+.+||++|+++++. ++|||++
T Consensus 4 ~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t 83 (182)
T cd04128 4 GLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT 83 (182)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc
Confidence 34699999999999999999999999999997763 3 345568999999999998766 8899999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
+++||+++..|+.++.+
T Consensus 84 ~~~s~~~i~~~~~~~~~ 100 (182)
T cd04128 84 RKSTLNSIKEWYRQARG 100 (182)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 23
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.84 E-value=7e-21 Score=122.97 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=71.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||+.+|..++|.+.+.||++.++. . +++..+.+++||++|+++|+. |+|||++
T Consensus 10 vviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t 89 (189)
T cd04121 10 LLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDIT 89 (189)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECc
Confidence 34699999999999999999999888899887763 2 345569999999999998776 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
+++||+++..|++++.++
T Consensus 90 ~~~Sf~~~~~w~~~i~~~ 107 (189)
T cd04121 90 NRWSFDGIDRWIKEIDEH 107 (189)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998654
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=9.7e-21 Score=125.75 Aligned_cols=82 Identities=15% Similarity=0.353 Sum_probs=71.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|+++||||||+.+|..+.|.+.|.||++.++.. +++..+.+.+|||+|+++|+. |+|||+++
T Consensus 17 vvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~ 96 (232)
T cd04174 17 VLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 96 (232)
T ss_pred EEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC
Confidence 346999999999999999999999999999877642 456779999999999998775 99999999
Q ss_pred hhhHHHH-HHHHHHHHHh
Q psy2967 84 TDKLEAS-RNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~-~~~~~~i~~~ 100 (101)
++||+++ ..|+.++.+.
T Consensus 97 ~~Sf~~~~~~w~~~i~~~ 114 (232)
T cd04174 97 PETVDSALKKWKAEIMDY 114 (232)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 9999985 8899988753
No 25
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.83 E-value=6.6e-21 Score=124.07 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=71.1
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
+|+++||||||+++|+.+.|.+.+.||+|.++.. ++++.+.+.+||++|+++|+. |+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5899999999999999999998899999977743 345679999999999998865 899999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
.||+++..|+.++.+.
T Consensus 81 ~S~~~i~~w~~~i~~~ 96 (200)
T smart00176 81 VTYKNVPNWHRDLVRV 96 (200)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 26
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=1.9e-20 Score=119.35 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=69.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||+++|..+.|.+.|.||++..+. . +.+..+.+.+||++|+++++. |+|||+++
T Consensus 5 ~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~ 84 (175)
T cd01874 5 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 84 (175)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC
Confidence 34699999999999999999999899999987764 3 345568999999999998754 99999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
++||+++. .|+.++.+
T Consensus 85 ~~s~~~~~~~w~~~i~~ 101 (175)
T cd01874 85 PSSFENVKEKWVPEITH 101 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997 58887754
No 27
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=7.2e-20 Score=120.49 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=72.5
Q ss_pred eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
+.-+.+|++|||||||++++..++|...+.||++.++.. + ....+.+.+||++|+++++. |+||
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvf 93 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEE
Confidence 333446999999999999999999999999999987654 2 34568999999999988755 8999
Q ss_pred ECCChhhHHHHHHHHHHHHHh
Q psy2967 80 DAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 80 d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|+++++||+++..|+.++.+.
T Consensus 94 D~~~~~s~~~i~~w~~~i~~~ 114 (219)
T PLN03071 94 DVTARLTYKNVPTWHRDLCRV 114 (219)
T ss_pred eCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 28
>KOG0088|consensus
Probab=99.82 E-value=3.2e-21 Score=120.40 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=70.9
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
+|...||||||+.||++++|...+..|+-..+. . +......+.||||+||++|.. ++|||++|+
T Consensus 19 LGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr 98 (218)
T KOG0088|consen 19 LGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR 98 (218)
T ss_pred EcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch
Confidence 499999999999999999999988888875553 2 566789999999999999988 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
+||+.++.|..++..
T Consensus 99 dSFqKVKnWV~Elr~ 113 (218)
T KOG0088|consen 99 DSFQKVKNWVLELRT 113 (218)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 29
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=5.2e-20 Score=119.35 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=69.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--Ee-cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--IT-KGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~-~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
.+|++|||||||+++|..+.+...+.||++.++. . +. +..+.+.+||++|+++++. |+|||++
T Consensus 5 ivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t 84 (201)
T cd04107 5 VIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVT 84 (201)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECC
Confidence 4699999999999999999999899999997653 2 33 5678999999999998765 8999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
+++||+++..|+.++.+
T Consensus 85 ~~~s~~~~~~~~~~i~~ 101 (201)
T cd04107 85 RPSTFEAVLKWKADLDS 101 (201)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 30
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=3.4e-20 Score=117.56 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=70.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||+++|..+.|.+.|.||++.++. . +.+..+.+++||++|++++.. ++|||+++
T Consensus 5 ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 84 (170)
T cd04108 5 VVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD 84 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC
Confidence 4699999999999999999999999999987764 2 345568999999999998765 99999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+++|+++..|+.+++++
T Consensus 85 ~~s~~~~~~~~~~~~~~ 101 (170)
T cd04108 85 VASLEHTRQWLEDALKE 101 (170)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 31
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=5.3e-20 Score=116.05 Aligned_cols=80 Identities=29% Similarity=0.528 Sum_probs=72.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|++|||||||+++|..+.+.+.+.||++++...+..+++.+.+||++|+++++. |+|||.+++.+|
T Consensus 4 ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~ 83 (164)
T cd04162 4 VLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERL 83 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHH
Confidence 36899999999999999998888899999988777888899999999999998765 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
.+++.|+.+++.
T Consensus 84 ~~~~~~l~~~~~ 95 (164)
T cd04162 84 PLARQELHQLLQ 95 (164)
T ss_pred HHHHHHHHHHHh
Confidence 999999988864
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.81 E-value=4.6e-20 Score=121.82 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=69.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|+++||||||+.+|..++|.+.|.||++.++. .+++..+.+.+||++|++.|.. |+|||+++
T Consensus 5 vvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~ 84 (222)
T cd04173 5 VVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR 84 (222)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC
Confidence 34699999999999999999999999999987764 2566779999999999987765 99999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
++||+++. .|..++..
T Consensus 85 ~~Sf~~i~~~w~~~~~~ 101 (222)
T cd04173 85 PETLDSVLKKWQGETQE 101 (222)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999994 67766543
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.81 E-value=5e-20 Score=115.64 Aligned_cols=80 Identities=18% Similarity=0.332 Sum_probs=69.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.|.+.+.||++.++. . +.+..+.+.+||++|+++++. ++|||+++
T Consensus 5 vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04117 5 LIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS 84 (161)
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC
Confidence 4699999999999999999999889999997663 3 344468899999999988765 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||+++..|++++.+
T Consensus 85 ~~sf~~~~~~~~~~~~ 100 (161)
T cd04117 85 ERSYQHIMKWVSDVDE 100 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.81 E-value=4.9e-20 Score=115.06 Aligned_cols=82 Identities=26% Similarity=0.504 Sum_probs=71.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||+++|.++.|.+++.||+|.+... ++...+.+.+||++|++++.. |+|||++
T Consensus 3 ~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~ 82 (162)
T PF00071_consen 3 VVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVT 82 (162)
T ss_dssp EEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 347999999999999999999999999999877643 345678999999999998765 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
+++||+++..|++++.+.
T Consensus 83 ~~~S~~~~~~~~~~i~~~ 100 (162)
T PF00071_consen 83 DEESFENLKKWLEEIQKY 100 (162)
T ss_dssp BHHHHHTHHHHHHHHHHH
T ss_pred cccccccccccccccccc
Confidence 999999999999998764
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=7.3e-20 Score=115.06 Aligned_cols=80 Identities=18% Similarity=0.335 Sum_probs=69.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.|.+.+.||++.++.. +++..+.+.+||++|+++++. |+|||+++
T Consensus 7 iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 86 (166)
T cd04122 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 86 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 46999999999999999999998999999877642 445568999999999988765 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||+++..|+.++..
T Consensus 87 ~~s~~~~~~~~~~~~~ 102 (166)
T cd04122 87 RSTYNHLSSWLTDARN 102 (166)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 36
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=1.4e-19 Score=115.16 Aligned_cols=82 Identities=34% Similarity=0.631 Sum_probs=71.5
Q ss_pred eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.-+.+|+++||||||++++..+.+. .+.||++.++..+..+.+.+.+||++|+++++. |+|||++++
T Consensus 15 ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~ 93 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDR 93 (175)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCH
Confidence 3344699999999999999988885 588999988877777889999999999988765 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++.+|+.++++
T Consensus 94 ~s~~~~~~~l~~~~~ 108 (175)
T smart00177 94 DRIDEAREELHRMLN 108 (175)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 37
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.80 E-value=1.2e-19 Score=115.20 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||+++|..++|.+.+.||++..+. .+++..+.+.+||++|+++++. |+|||+++
T Consensus 6 ~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~ 85 (172)
T cd04141 6 VMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD 85 (172)
T ss_pred EEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc
Confidence 34699999999999999999999899999986664 2456668999999999988766 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.||+++..|+..+.+
T Consensus 86 ~~Sf~~~~~~~~~i~~ 101 (172)
T cd04141 86 RHSFQEASEFKKLITR 101 (172)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999988776643
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.80 E-value=1.2e-19 Score=113.12 Aligned_cols=80 Identities=11% Similarity=0.232 Sum_probs=68.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+.+.+.||++..+. . +++..+.+.+||++|+++++. ++|||++++
T Consensus 6 i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (163)
T cd04136 6 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQ 85 (163)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCH
Confidence 4699999999999999999999889999874433 2 345568899999999998766 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++..|+.++.+
T Consensus 86 ~s~~~~~~~~~~i~~ 100 (163)
T cd04136 86 SSFNDLQDLREQILR 100 (163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988865
No 39
>KOG0093|consensus
Probab=99.80 E-value=1.5e-19 Score=111.63 Aligned_cols=80 Identities=18% Similarity=0.466 Sum_probs=71.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++.||||||+.|+.+..|...+..|+|++++. + ..+.++++||||+|+|+++. |+|||++
T Consensus 25 liiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDit 104 (193)
T KOG0093|consen 25 LIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 104 (193)
T ss_pred EEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecC
Confidence 446999999999999999999999999999988853 2 34679999999999999988 9999999
Q ss_pred ChhhHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALI 98 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~ 98 (101)
|.+||+.+..|..+|.
T Consensus 105 NeeSf~svqdw~tqIk 120 (193)
T KOG0093|consen 105 NEESFNSVQDWITQIK 120 (193)
T ss_pred CHHHHHHHHHHHHHhe
Confidence 9999999999998875
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=99.80 E-value=2e-19 Score=115.60 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=70.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||+++|..+.+.+.+.||++..+.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 10 iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~ 89 (189)
T PTZ00369 10 VVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSR 89 (189)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCH
Confidence 35999999999999999999998999999877642 566678999999999998866 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++..|+.++.+
T Consensus 90 ~s~~~~~~~~~~i~~ 104 (189)
T PTZ00369 90 SSFEEIASFREQILR 104 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.80 E-value=2.5e-19 Score=114.04 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=68.4
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||+.+|..+.|.+++.||++..+. .++++.+.+.+||++|+++++. |+|||+++
T Consensus 5 ~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (174)
T cd01871 5 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 84 (174)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC
Confidence 34699999999999999999999999999975543 2455668999999999987755 89999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
++||+++. .|+..+..
T Consensus 85 ~~sf~~~~~~~~~~~~~ 101 (174)
T cd01871 85 PASFENVRAKWYPEVRH 101 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999996 58877654
No 42
>PLN00023 GTP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=123.54 Aligned_cols=82 Identities=15% Similarity=0.318 Sum_probs=70.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe---------------cCcEEEEEEeeCCCCccce------
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT---------------KGNVTIKVWDIGGQPRFRS------ 75 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~---------------~~~~~~~i~D~~G~~~~~~------ 75 (101)
+.+|+.|||||||+++|+.+.|...+.||+|.++. .+. .+.+.++|||++|+++|+.
T Consensus 25 VLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yy 104 (334)
T PLN00023 25 LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFY 104 (334)
T ss_pred EEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhc
Confidence 44699999999999999999999899999997753 222 1458899999999999886
Q ss_pred ------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967 76 ------IYMVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 76 ------i~v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|+|||+++++||+++..|++++.++
T Consensus 105 r~AdgiILVyDITdr~SFenL~kWl~eI~~~ 135 (334)
T PLN00023 105 SQINGVIFVHDLSQRRTKTSLQKWASEVAAT 135 (334)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999998753
No 43
>KOG0393|consensus
Probab=99.79 E-value=6.7e-19 Score=113.75 Aligned_cols=86 Identities=14% Similarity=0.239 Sum_probs=74.7
Q ss_pred eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEe-cCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KIT-KGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~-~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
+.-..|||.+||||+|+..|..+.|++.|.||+-.++. .++ ++.+.+.+|||+||+.|.. ++||
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cf 84 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCF 84 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEE
Confidence 34455799999999999999999999999999986663 364 8889999999999998766 7889
Q ss_pred ECCChhhHHHH-HHHHHHHHHhC
Q psy2967 80 DAADTDKLEAS-RNELHALIEKL 101 (101)
Q Consensus 80 d~~~~~sf~~~-~~~~~~i~~~l 101 (101)
++.+++||+++ .+|+.|+..++
T Consensus 85 sv~~p~S~~nv~~kW~pEi~~~c 107 (198)
T KOG0393|consen 85 SVVSPESFENVKSKWIPEIKHHC 107 (198)
T ss_pred EcCChhhHHHHHhhhhHHHHhhC
Confidence 99999999998 57999998764
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.79 E-value=2.2e-19 Score=112.06 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=70.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++.++++...+.||++.++. . +.+..+.+.+||++|++++.. |+|||+++
T Consensus 5 ~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~ 84 (168)
T cd04119 5 SMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD 84 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC
Confidence 4699999999999999999999999999997763 2 345678999999999986554 99999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+++|+++..|+.++.+.
T Consensus 85 ~~s~~~~~~~~~~~~~~ 101 (168)
T cd04119 85 RQSFEALDSWLKEMKQE 101 (168)
T ss_pred HHHHHhHHHHHHHHHHh
Confidence 99999999999988653
No 45
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=1.3e-19 Score=116.03 Aligned_cols=81 Identities=33% Similarity=0.635 Sum_probs=71.5
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
-+.+|+++||||||++++..+++. .+.||++.++..++..++.+++||++|+++++. |+|||+++++
T Consensus 20 i~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~ 98 (181)
T PLN00223 20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
T ss_pred EEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH
Confidence 344699999999999999988887 578999998888888899999999999988765 9999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy2967 86 KLEASRNELHALIE 99 (101)
Q Consensus 86 sf~~~~~~~~~i~~ 99 (101)
+|+++..|+.++++
T Consensus 99 s~~~~~~~l~~~l~ 112 (181)
T PLN00223 99 RVVEARDELHRMLN 112 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988887754
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.79 E-value=2.3e-19 Score=112.37 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=69.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+.+.+.||++..+. . +.+..+.+.+||++|+++++. ++|||+++
T Consensus 5 ~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (164)
T cd04175 5 VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA 84 (164)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC
Confidence 34699999999999999999998889999986553 2 445578899999999998776 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++.+|+.++.+
T Consensus 85 ~~s~~~~~~~~~~i~~ 100 (164)
T cd04175 85 QSTFNDLQDLREQILR 100 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998875
No 47
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=3.1e-19 Score=114.81 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=69.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||+++|..+.|...+.||++.++.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 5 ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~ 84 (189)
T cd04134 5 VLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP 84 (189)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCH
Confidence 46999999999999999999998899999876642 455668999999999988755 889999999
Q ss_pred hhHHHHH-HHHHHHHHh
Q psy2967 85 DKLEASR-NELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~~ 100 (101)
+||+++. .|+.++..+
T Consensus 85 ~sf~~~~~~~~~~i~~~ 101 (189)
T cd04134 85 DSLENVESKWLGEIREH 101 (189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 9999996 598887653
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.79 E-value=2.3e-19 Score=112.77 Aligned_cols=80 Identities=20% Similarity=0.447 Sum_probs=68.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++.+++|...+.||++.++. .+ .+..+.+.+||++|+++++. ++|||+++
T Consensus 6 i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~ 85 (165)
T cd01865 6 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 85 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC
Confidence 3699999999999999999998889999986653 33 34568999999999987765 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++.+
T Consensus 86 ~~s~~~~~~~~~~i~~ 101 (165)
T cd01865 86 EESFNAVQDWSTQIKT 101 (165)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 49
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.9e-19 Score=115.86 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=69.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||+++|..+.|...+.||++..+.. +++..+.+++||++|+++++. |+|||++++
T Consensus 4 ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~ 83 (190)
T cd04144 4 VLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR 83 (190)
T ss_pred EECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH
Confidence 46999999999999999999998899999865532 445568899999999998775 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
+||+++..|+.++.+
T Consensus 84 ~s~~~~~~~~~~i~~ 98 (190)
T cd04144 84 STFERVERFREQIQR 98 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 50
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.79 E-value=5.1e-19 Score=111.17 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=65.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCcEEEEEEeeCCCCccce-------EEEEECCChhhHHHH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPRFRS-------IYMVDAADTDKLEAS 90 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~~~~sf~~~ 90 (101)
.+|++|||||||+.+|..+.|.+.+.|+.+..... +++..+.+.+||++|++.... ++|||++|++||+++
T Consensus 5 vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ilv~d~~~~~sf~~~ 84 (158)
T cd04103 5 IVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIFVFSLENEASFQTV 84 (158)
T ss_pred EECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCchhHHhcCCEEEEEEECCCHHHHHHH
Confidence 46999999999999999999987777765543333 445568899999999975322 999999999999999
Q ss_pred HHHHHHHHH
Q psy2967 91 RNELHALIE 99 (101)
Q Consensus 91 ~~~~~~i~~ 99 (101)
..|+.++..
T Consensus 85 ~~~~~~i~~ 93 (158)
T cd04103 85 YNLYHQLSS 93 (158)
T ss_pred HHHHHHHHH
Confidence 999998864
No 51
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.79 E-value=4.3e-19 Score=112.04 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=70.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEE----ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++... ..+.+.+.+||++|++++.. |+|||++
T Consensus 4 ~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 83 (166)
T cd00877 4 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVT 83 (166)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECC
Confidence 3469999999999999999999888999999776542 34568999999999987665 8999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
+++||+++..|++++.+.
T Consensus 84 ~~~s~~~~~~~~~~i~~~ 101 (166)
T cd00877 84 SRVTYKNVPNWHRDLVRV 101 (166)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 52
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=3.3e-19 Score=111.84 Aligned_cols=79 Identities=32% Similarity=0.636 Sum_probs=70.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|+++||||||++++..+++. .+.||+|+++..+....+.+.+||++|+++++. |+|||++++.+|
T Consensus 5 ~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~ 83 (159)
T cd04150 5 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI 83 (159)
T ss_pred EECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 3599999999999999988887 589999988877777889999999999987664 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++.+|+.+++.
T Consensus 84 ~~~~~~~~~~~~ 95 (159)
T cd04150 84 GEAREELQRMLN 95 (159)
T ss_pred HHHHHHHHHHHh
Confidence 999998887764
No 53
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=1.9e-19 Score=115.43 Aligned_cols=80 Identities=30% Similarity=0.611 Sum_probs=70.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|+++||||||++++..+.+.. +.||++.++..++..++.+.+||++|+++++. |+|||++++++
T Consensus 21 ~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s 99 (182)
T PTZ00133 21 LMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER 99 (182)
T ss_pred EEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence 335999999999999999888874 78999988877888889999999999987765 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 100 ~~~~~~~l~~~~~ 112 (182)
T PTZ00133 100 IGDAREELERMLS 112 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887754
No 54
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=3.7e-19 Score=115.30 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||+++|..+.+...+.||++.++. .+ .+..+.+.+||++|+++++. ++|||++
T Consensus 10 vvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~ 89 (199)
T cd04110 10 LIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 89 (199)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC
Confidence 34699999999999999999998889999987653 33 34568899999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
+++||+++..|+.++..
T Consensus 90 ~~~s~~~~~~~~~~i~~ 106 (199)
T cd04110 90 NGESFVNVKRWLQEIEQ 106 (199)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.78 E-value=5.2e-19 Score=110.99 Aligned_cols=80 Identities=20% Similarity=0.443 Sum_probs=68.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+...+.||++.++. .+ .+..+.+.+||++|++++.. |+|||+++
T Consensus 7 i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 7 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC
Confidence 3699999999999999999998888999986653 23 34568899999999988765 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||+++..|+.++.+
T Consensus 87 ~~s~~~l~~~~~~~~~ 102 (166)
T cd01869 87 QESFNNVKQWLQEIDR 102 (166)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999999988754
No 56
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=5.6e-19 Score=112.13 Aligned_cols=80 Identities=24% Similarity=0.470 Sum_probs=69.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--Ee------------cCcEEEEEEeeCCCCccce----------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--IT------------KGNVTIKVWDIGGQPRFRS---------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~i~D~~G~~~~~~---------- 75 (101)
.+|++|||||||++++..+.+...+.||++.++.. +. ...+.+.+||++|+++++.
T Consensus 9 ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 88 (180)
T cd04127 9 ALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAM 88 (180)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCC
Confidence 46999999999999999999999999999977642 22 3458999999999998765
Q ss_pred --EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 --IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 --i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
++|||+++++||.++..|+.++..
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~ 114 (180)
T cd04127 89 GFLLIFDLTNEQSFLNVRNWMSQLQT 114 (180)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 57
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=6.2e-19 Score=111.26 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=68.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||+++|..+.|...+.||++..+.. +++..+.+.+||++|+++++. |+|||++++
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 82 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP 82 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCH
Confidence 46999999999999999999998899998766532 445568899999999998754 899999999
Q ss_pred hhHHHHH-HHHHHHHH
Q psy2967 85 DKLEASR-NELHALIE 99 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~ 99 (101)
+||+++. .|+..+.+
T Consensus 83 ~s~~~~~~~~~~~i~~ 98 (174)
T smart00174 83 ASFENVKEKWYPEVKH 98 (174)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999996 59888765
No 58
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.78 E-value=4.7e-19 Score=112.14 Aligned_cols=80 Identities=41% Similarity=0.698 Sum_probs=70.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|+++||||||++++..+++. .+.||++.++..+....+.+++||++|+++++. |+|||++++.+
T Consensus 13 ~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s 91 (168)
T cd04149 13 LMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR 91 (168)
T ss_pred EEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh
Confidence 34699999999999999988886 578999988877777889999999999988765 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 92 ~~~~~~~~~~~~~ 104 (168)
T cd04149 92 IDEARQELHRIIN 104 (168)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887764
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.78 E-value=6.6e-19 Score=110.12 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=68.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE-EE--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM-RK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+.+.+.||++..+ .. +++..+.+++||++|+++++. ++|||++++
T Consensus 6 i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~ 85 (163)
T cd04176 6 VLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQ 85 (163)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCH
Confidence 359999999999999999999988889886333 22 455568899999999998877 889999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
+||+++..|+.++.+
T Consensus 86 ~s~~~~~~~~~~~~~ 100 (163)
T cd04176 86 QTFQDIKPMRDQIVR 100 (163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.78 E-value=7.5e-19 Score=110.21 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=69.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+.+.+.+|.+..+. .+++..+.+.+||++|+++++. |+|||+++
T Consensus 5 vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd04124 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR 84 (161)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 4699999999999999999998888888776543 2456678999999999998766 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+.++.+
T Consensus 85 ~~s~~~~~~~~~~i~~ 100 (161)
T cd04124 85 KITYKNLSKWYEELRE 100 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988865
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.78 E-value=6.6e-19 Score=115.38 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=69.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--c-CcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--K-GNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~-~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
.+|++|||||||+++|.++.|...+.||++.++. .+. . ..+.+.+||++|++.++. |+|||++
T Consensus 5 ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t 84 (215)
T cd04109 5 VLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVT 84 (215)
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECC
Confidence 4699999999999999999999999999997763 232 2 468999999999986554 8999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
+++||+++..|+.++.+.
T Consensus 85 ~~~s~~~~~~w~~~l~~~ 102 (215)
T cd04109 85 NSQSFENLEDWYSMVRKV 102 (215)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 62
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.78 E-value=9.4e-19 Score=115.47 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=69.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|+++||||||+++|..++|.+ +.||++..+.......+.+.+||++|+++++. |+|||+++++||
T Consensus 5 ivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf 83 (220)
T cd04126 5 LLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL 83 (220)
T ss_pred EECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHH
Confidence 46999999999999999999974 78999987766556778999999999998876 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+..+.+
T Consensus 84 ~~l~~~~~~l~~ 95 (220)
T cd04126 84 EELEDRFLGLTD 95 (220)
T ss_pred HHHHHHHHHHHH
Confidence 999998887764
No 63
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=9.1e-19 Score=110.67 Aligned_cols=79 Identities=28% Similarity=0.598 Sum_probs=70.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|+++||||||++++..+.+. .+.||++.++..++..++.+.+||++|+++++. ++|||++++++|
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~ 82 (169)
T cd04158 4 TLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRV 82 (169)
T ss_pred EECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHH
Confidence 4689999999999999998876 489999988877888899999999999987654 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 83 ~~~~~~~~~~~~ 94 (169)
T cd04158 83 SEAHSELAKLLT 94 (169)
T ss_pred HHHHHHHHHHhc
Confidence 999999988864
No 64
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.77 E-value=5.1e-19 Score=118.45 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=68.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE-EE--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM-RK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||+++|+.++|...+.||++..+ .. +.+..+.++|||++|++.|+. |+|||++++
T Consensus 5 vlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~ 84 (247)
T cd04143 5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR 84 (247)
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH
Confidence 469999999999999999999988999997322 22 445568999999999987654 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
+||+++..|+.++.+
T Consensus 85 ~Sf~~i~~~~~~I~~ 99 (247)
T cd04143 85 ESFEEVCRLREQILE 99 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 65
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.77 E-value=8.9e-19 Score=110.28 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=70.4
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
-+.+|+++||||||++++..+.+.+.+.+|++.++. . +++..+.+.+||++|+++++. ++|||+
T Consensus 8 i~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAV 87 (170)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEEC
Confidence 344699999999999999999999888899987653 2 456678999999999998755 889999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
++++||+.+..|+.++++
T Consensus 88 ~~~~s~~~~~~~~~~~~~ 105 (170)
T cd04116 88 DDSQSFQNLSNWKKEFIY 105 (170)
T ss_pred CCHHHHHhHHHHHHHHHH
Confidence 999999999999988765
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.77 E-value=8.2e-19 Score=108.93 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=68.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.||.+..+.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 6 iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~ 85 (162)
T cd04138 6 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR 85 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH
Confidence 46999999999999999999988899998865532 445567899999999998765 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
.+|+++..|+.++.+
T Consensus 86 ~s~~~~~~~~~~i~~ 100 (162)
T cd04138 86 KSFEDIHTYREQIKR 100 (162)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 67
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.77 E-value=8.7e-19 Score=110.32 Aligned_cols=80 Identities=25% Similarity=0.476 Sum_probs=69.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.|...+.||++.++. .+ .+..+.+.+||++|++++.. ++|||+++
T Consensus 8 vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~ 87 (167)
T cd01867 8 LIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87 (167)
T ss_pred EECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC
Confidence 4699999999999999999999999999987653 23 44558999999999987665 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++.+
T Consensus 88 ~~s~~~~~~~~~~i~~ 103 (167)
T cd01867 88 EKSFENIRNWMRNIEE 103 (167)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999999998765
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=1.6e-18 Score=113.43 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=70.0
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E---ecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~---~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
+.+|++|||||||++++..+.+...+.||++.++.. + .+..+.+++||++|++++.. ++|||+
T Consensus 6 vvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~ 85 (211)
T cd04111 6 IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDI 85 (211)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEEC
Confidence 346999999999999999999988889999876632 3 24468999999999988765 899999
Q ss_pred CChhhHHHHHHHHHHHHHh
Q psy2967 82 ADTDKLEASRNELHALIEK 100 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~~ 100 (101)
++++||+++..|+.++.+.
T Consensus 86 ~~~~Sf~~l~~~~~~i~~~ 104 (211)
T cd04111 86 TNRESFEHVHDWLEEARSH 104 (211)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 69
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.77 E-value=1.7e-18 Score=107.97 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=69.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----Ee--cCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----IT--KGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
.+|++++|||||++++..+.+.+.+.||++.++.. +. ...+.+++||++|+++++. ++|||+
T Consensus 5 ~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~ 84 (162)
T cd04106 5 VVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFST 84 (162)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEEC
Confidence 46999999999999999999998999999987632 33 5578999999999987766 999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++++|+++..|+.++.+
T Consensus 85 ~~~~s~~~l~~~~~~~~~ 102 (162)
T cd04106 85 TDRESFEAIESWKEKVEA 102 (162)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999988754
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=1.5e-18 Score=109.59 Aligned_cols=81 Identities=19% Similarity=0.411 Sum_probs=69.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS-------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~~ 82 (101)
.+|++|||||||++++..+.+...+.+|++.++.. +.+..+.+.+||++|+++++. ++|||++
T Consensus 7 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T cd04115 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT 86 (170)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC
Confidence 36999999999999999999998899999876642 445668999999999987752 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++++|+.+..|+.++...
T Consensus 87 ~~~s~~~~~~~~~~~~~~ 104 (170)
T cd04115 87 NMASFHSLPSWIEECEQH 104 (170)
T ss_pred CHHHHHhHHHHHHHHHHh
Confidence 999999999999887653
No 71
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1.1e-18 Score=110.31 Aligned_cols=79 Identities=24% Similarity=0.517 Sum_probs=70.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|+++||||||++++.++ +...+.||+|.....+..+++.+.+||++|+++++. |+|||.+++.+|
T Consensus 4 ~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~ 82 (167)
T cd04161 4 TVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRV 82 (167)
T ss_pred EECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHH
Confidence 4689999999999999966 777899999988777888899999999999987664 899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
++++.|+.++++
T Consensus 83 ~~~~~~l~~l~~ 94 (167)
T cd04161 83 QEVKEILRELLQ 94 (167)
T ss_pred HHHHHHHHHHHc
Confidence 999999998864
No 72
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=1.3e-18 Score=111.47 Aligned_cols=80 Identities=21% Similarity=0.437 Sum_probs=69.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||+++|..+.|...+.||++.++. . +.+..+.+.+||++|+++++. ++|||+++
T Consensus 5 v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~ 84 (188)
T cd04125 5 IIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD 84 (188)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC
Confidence 4699999999999999999998889999986653 2 345568999999999988764 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++..
T Consensus 85 ~~s~~~i~~~~~~i~~ 100 (188)
T cd04125 85 QESFENLKFWINEINR 100 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.76 E-value=1.6e-18 Score=109.30 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=68.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.+|.+.++.. +.+..+.+.+||++|++++.. ++|||+++
T Consensus 9 vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~ 88 (168)
T cd01866 9 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 88 (168)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence 46999999999999999999988888888876532 445568999999999987655 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||+++..|+.++.+
T Consensus 89 ~~s~~~~~~~~~~~~~ 104 (168)
T cd01866 89 RETFNHLTSWLEDARQ 104 (168)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
No 74
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.76 E-value=2.2e-18 Score=108.29 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=68.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.|...+.||++..+.. ...+.+.+.+||++|+++++. |+|||++++
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (165)
T cd04140 6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK 85 (165)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH
Confidence 46999999999999999999988889998865543 345668999999999988765 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|++++.|+..+.+
T Consensus 86 ~s~~~~~~~~~~i~~ 100 (165)
T cd04140 86 QSLEELKPIYELICE 100 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876654
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=2.4e-18 Score=107.33 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=70.0
Q ss_pred eeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967 17 VGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVD 80 (101)
Q Consensus 17 ~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d 80 (101)
+.+. +|++|||||||++++..+.+...+.||.+..+.. +++..+.+.+||++|++++.. ++|||
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 3444 5999999999999999999988888998855432 455568899999999988766 99999
Q ss_pred CCChhhHHHHHHHHHHHHH
Q psy2967 81 AADTDKLEASRNELHALIE 99 (101)
Q Consensus 81 ~~~~~sf~~~~~~~~~i~~ 99 (101)
++++++|+++..|+.++.+
T Consensus 83 ~~~~~s~~~~~~~~~~~~~ 101 (164)
T cd04145 83 VTDRGSFEEVDKFHTQILR 101 (164)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.76 E-value=2.1e-18 Score=108.05 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=69.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.||.+.++.. + .+..+.+.+||++|++++.. |+|||+++
T Consensus 8 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (165)
T cd01868 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 87 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC
Confidence 46999999999999999999988889999876532 3 34457899999999987655 89999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+++|+++.+|+.++.+.
T Consensus 88 ~~s~~~~~~~~~~~~~~ 104 (165)
T cd01868 88 KQTFENVERWLKELRDH 104 (165)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.7e-18 Score=108.63 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=67.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEe--cCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+.+.+.+|.+.++ ..+. +..+.+.+||++|+++++. ++|||+++
T Consensus 8 vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~ 87 (165)
T cd01864 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR 87 (165)
T ss_pred EECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC
Confidence 359999999999999999999988889988654 3333 4447899999999987655 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++..
T Consensus 88 ~~s~~~~~~~~~~i~~ 103 (165)
T cd01864 88 RSSFESVPHWIEEVEK 103 (165)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999999998865
No 78
>PLN03110 Rab GTPase; Provisional
Probab=99.75 E-value=3.4e-18 Score=112.25 Aligned_cols=82 Identities=18% Similarity=0.349 Sum_probs=70.6
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
-+.+|++|||||||+++|..+.+...+.||++.++. . +.+..+.+++||++|+++++. |+|||+
T Consensus 15 i~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 94 (216)
T PLN03110 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 94 (216)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEEC
Confidence 334699999999999999999998889999997763 2 445568999999999998766 899999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++++|+++..|+..+.+
T Consensus 95 ~~~~s~~~~~~~~~~~~~ 112 (216)
T PLN03110 95 TKRQTFDNVQRWLRELRD 112 (216)
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 79
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=2.4e-18 Score=107.16 Aligned_cols=80 Identities=31% Similarity=0.547 Sum_probs=69.6
Q ss_pred EeccCCCcceeeeeccccCc-CCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ-FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
.+|+++||||||++++..+. +...+.||++.....+...++.+.+||++|+++++. |+|+|.+++.+
T Consensus 4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~ 83 (162)
T cd04157 4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR 83 (162)
T ss_pred EECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH
Confidence 46999999999999999876 466788999987777777889999999999988765 89999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|..+..|+.++++
T Consensus 84 ~~~~~~~~~~~~~ 96 (162)
T cd04157 84 LVVVKDELELLLN 96 (162)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999887754
No 80
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.75 E-value=3.1e-18 Score=110.05 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=67.8
Q ss_pred EeccCCCcceeeeeccccCcCCC-CCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
.+|+++||||||+++|..+.|.. .+.||++..+. . +.+..+.+.+||++|+++++. ++|||++
T Consensus 5 vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~ 84 (193)
T cd04118 5 MLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT 84 (193)
T ss_pred EECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC
Confidence 46999999999999999999875 68899986652 2 445568899999999987754 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++.+
T Consensus 85 ~~~s~~~~~~~~~~i~~ 101 (193)
T cd04118 85 DSSSFERAKFWVKELQN 101 (193)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 81
>KOG0071|consensus
Probab=99.75 E-value=4.8e-18 Score=104.22 Aligned_cols=85 Identities=44% Similarity=0.733 Sum_probs=75.5
Q ss_pred ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEE
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYM 78 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v 78 (101)
++.+.++|+. ++||||+++++.-++.. ...||+|++++.+.++++++.+||.+||++.|. |||
T Consensus 17 E~~ilmlGLd----~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLD----AAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecc----cCCceehhhHHhcCCCc-ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 3456666665 99999999999988866 789999999999999999999999999999887 999
Q ss_pred EECCChhhHHHHHHHHHHHHHh
Q psy2967 79 VDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 79 ~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
.|..+++..++++..+..++++
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIIND 113 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCC
Confidence 9999999999999999888753
No 82
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=4.1e-18 Score=108.90 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=67.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE-E--e-cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-I--T-KGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~--~-~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||+++|..+.+.+.+.||++.++.. + . +..+.+.+||++|++++.. ++|||++
T Consensus 4 ~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 83 (187)
T cd04132 4 VVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD 83 (187)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC
Confidence 346999999999999999999998999999877642 2 2 4568999999999987654 8999999
Q ss_pred ChhhHHHHH-HHHHHHH
Q psy2967 83 DTDKLEASR-NELHALI 98 (101)
Q Consensus 83 ~~~sf~~~~-~~~~~i~ 98 (101)
+++||+++. .|+.++.
T Consensus 84 ~~~s~~~~~~~~~~~~~ 100 (187)
T cd04132 84 NPTSLDNVEDKWFPEVN 100 (187)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 999999996 5887765
No 83
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.75 E-value=3.4e-18 Score=106.89 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=68.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++.++.+...+.||++..+.. +.+..+.+.+||++|++++.. ++|||++++
T Consensus 5 v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 84 (164)
T smart00173 5 VLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR 84 (164)
T ss_pred EECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCH
Confidence 36999999999999999999998888988744432 445568999999999998766 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++..|...+.+
T Consensus 85 ~s~~~~~~~~~~i~~ 99 (164)
T smart00173 85 QSFEEIKKFREQILR 99 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887764
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=5.6e-18 Score=107.28 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=66.2
Q ss_pred eccCCCcceeeeeccccCcCC-CCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-QDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+|++|||||||+++|..+.|. ..|.||++..+. . +.+..+.+.+||++|++.++. ++|||.++
T Consensus 10 vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~ 89 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSD 89 (169)
T ss_pred ECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC
Confidence 599999999999999999998 889999986653 2 445568899999999987654 89999999
Q ss_pred hhhHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHAL 97 (101)
Q Consensus 84 ~~sf~~~~~~~~~i 97 (101)
+++|+++..|+.++
T Consensus 90 ~~s~~~~~~~~~~~ 103 (169)
T cd01892 90 PKSFSYCAEVYKKY 103 (169)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 85
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=3.5e-18 Score=109.98 Aligned_cols=81 Identities=26% Similarity=0.469 Sum_probs=68.5
Q ss_pred EeccCCCcceeeeeccccCcCCC-CCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
.+|++|||||||++++..+.+.. .+.+|++.++.. +++..+.+.+||++|++++.. |+|||++
T Consensus 5 vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 5 LLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC
Confidence 46999999999999999998864 678888866532 445678999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++++|+++..|+.++.+.
T Consensus 85 ~~~s~~~~~~~~~~i~~~ 102 (191)
T cd04112 85 NKASFDNIRAWLTEIKEY 102 (191)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999888653
No 86
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.74 E-value=3.9e-18 Score=106.44 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=68.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.+|.+.++.. +.+..+.+.+||++|++++.. ++|||+++
T Consensus 5 v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04113 5 IIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN 84 (161)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 46999999999999999999988888888866542 445568999999999987655 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++..
T Consensus 85 ~~s~~~~~~~~~~~~~ 100 (161)
T cd04113 85 RTSFEALPTWLSDARA 100 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987753
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.74 E-value=4.4e-18 Score=106.36 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=67.8
Q ss_pred EeccCCCcceeeeeccccC--cCCCCCCCccceEEEE--E---ecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967 20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRS------------IYMVD 80 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~--~---~~~~~~~~i~D~~G~~~~~~------------i~v~d 80 (101)
.+|+++||||||++++..+ .+.+++.||+|.++.. + ....+.+.+||++|++.++. ++|||
T Consensus 5 vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 84 (164)
T cd04101 5 VVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYD 84 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 4699999999999999865 6888999999977632 2 24569999999999987655 99999
Q ss_pred CCChhhHHHHHHHHHHHHH
Q psy2967 81 AADTDKLEASRNELHALIE 99 (101)
Q Consensus 81 ~~~~~sf~~~~~~~~~i~~ 99 (101)
++++++|+++..|+.++.+
T Consensus 85 ~~~~~s~~~~~~~~~~~~~ 103 (164)
T cd04101 85 VSNKASFENCSRWVNKVRT 103 (164)
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 88
>KOG0097|consensus
Probab=99.74 E-value=1.4e-18 Score=107.08 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+-|||||+|+++|.+.+|..+.+.|+|+.+- ++.+..++++|||++||++|+. +.|||++.
T Consensus 16 iigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr 95 (215)
T KOG0097|consen 16 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95 (215)
T ss_pred EEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh
Confidence 3599999999999999999999999999998873 3678899999999999999988 99999999
Q ss_pred hhhHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALI 98 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~ 98 (101)
+.+++++..|+....
T Consensus 96 rstynhlsswl~dar 110 (215)
T KOG0097|consen 96 RSTYNHLSSWLTDAR 110 (215)
T ss_pred hhhhhhHHHHHhhhh
Confidence 999999999997654
No 89
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.74 E-value=5.4e-18 Score=110.13 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=66.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCcc----------------ce----
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRF----------------RS---- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~----------------~~---- 75 (101)
.+|++|||||||+++|..++|...+.||++.++. . +++..+.+.+||++|.+++ +.
T Consensus 5 ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i 84 (198)
T cd04142 5 VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF 84 (198)
T ss_pred EECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence 4699999999999999999999889999875542 2 3455589999999886432 11
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|+|||+++++||+++..|++++.+
T Consensus 85 ilv~D~~~~~S~~~~~~~~~~i~~ 108 (198)
T cd04142 85 ILVYDICSPDSFHYVKLLRQQILE 108 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.74 E-value=8.5e-18 Score=106.42 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=66.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.|..++.||....+. .+++..+.+.+||++|++++.. |+|||++++
T Consensus 5 i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~ 84 (173)
T cd04130 5 LVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNP 84 (173)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCH
Confidence 3699999999999999999999999998753332 2455568999999999987765 999999999
Q ss_pred hhHHHHH-HHHHHHHH
Q psy2967 85 DKLEASR-NELHALIE 99 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~ 99 (101)
+||+++. .|+.++..
T Consensus 85 ~sf~~~~~~~~~~~~~ 100 (173)
T cd04130 85 SSFQNISEKWIPEIRK 100 (173)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999985 68887764
No 91
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.73 E-value=6.4e-18 Score=105.24 Aligned_cols=80 Identities=19% Similarity=0.420 Sum_probs=68.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++.+.++...+.|+.+.++.. + .+..+.+.+||++|+++++. ++|||+++
T Consensus 5 liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 84 (161)
T cd01861 5 FLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 84 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC
Confidence 46999999999999999999888888888876532 3 34457899999999988765 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++..
T Consensus 85 ~~s~~~~~~~~~~~~~ 100 (161)
T cd01861 85 RQSFDNTDKWIDDVRD 100 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 92
>KOG0073|consensus
Probab=99.73 E-value=1.2e-17 Score=104.58 Aligned_cols=84 Identities=30% Similarity=0.618 Sum_probs=74.5
Q ss_pred ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEE
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYM 78 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v 78 (101)
+.+++++|++ |+|||+++++|...+ .+...||.|++++++..+.+.+++||.+||...++ |+|
T Consensus 16 E~riLiLGLd----NsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 16 EVRILILGLD----NSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred eeEEEEEecC----CCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 4557777776 999999999999665 56899999999999999999999999999987766 999
Q ss_pred EECCChhhHHHHHHHHHHHHH
Q psy2967 79 VDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~~~~sf~~~~~~~~~i~~ 99 (101)
+|.+|+.+|++.+..+++++.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~ 111 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLV 111 (185)
T ss_pred EECchHHHHHHHHHHHHHHHh
Confidence 999999999999988888764
No 93
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.73 E-value=9.8e-18 Score=105.61 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=68.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
-+|++|||||||++++.++.+...+.||++..+.. +....+.+++||++|+++|+. ++|||++++
T Consensus 6 liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~ 85 (168)
T cd04177 6 VLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE 85 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH
Confidence 36999999999999999999988899999865532 445568999999999998776 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+.+..|..++.+
T Consensus 86 ~s~~~~~~~~~~i~~ 100 (168)
T cd04177 86 ASLNELGELREQVLR 100 (168)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 94
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.72 E-value=9.6e-18 Score=105.21 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=66.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCcc-ce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRF-RS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~-~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.||.+..+. .++++.+.+++||++|++++ .. |+|||+++
T Consensus 4 vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~ 83 (165)
T cd04146 4 VLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD 83 (165)
T ss_pred EECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC
Confidence 4699999999999999999998888888764432 35666789999999999852 11 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||+++..|+..+.+
T Consensus 84 ~~s~~~~~~~~~~~~~ 99 (165)
T cd04146 84 RSSFDEISQLKQLIRE 99 (165)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877654
No 95
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.72 E-value=2.4e-17 Score=107.80 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=70.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||+++++.+.+...+.||++.++.. .+.+.+.+.+||++|+++++. ++|||+++
T Consensus 14 liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 93 (215)
T PTZ00132 14 LVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS 93 (215)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 35999999999999999999998999999988754 245679999999999987654 88999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|.++..|+.++.+
T Consensus 94 ~~s~~~~~~~~~~i~~ 109 (215)
T PTZ00132 94 RITYKNVPNWHRDIVR 109 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 96
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=2e-17 Score=107.30 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=61.9
Q ss_pred eEeccCCCcceeeee-ccccC-----cCCCCCCCccce-E-EE-----------EEecCcEEEEEEeeCCCCcc-c----
Q psy2967 19 FNMRKITKGNVTIWP-VPLSG-----QFSQDMIPTVGF-N-MR-----------KITKGNVTIKVWDIGGQPRF-R---- 74 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~-~~~~~-----~~~~~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~-~---- 74 (101)
+.+|+++||||||+. ++..+ .|.+.+.||++. + +. .+++..+.+++|||+|+++. +
T Consensus 6 v~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~~~~~~ 85 (195)
T cd01873 6 VVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKDRRFAY 85 (195)
T ss_pred EEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhhhcccC
Confidence 346999999999995 55543 456678999963 2 21 24567899999999999632 1
Q ss_pred -e----EEEEECCChhhHHHHH-HHHHHHHH
Q psy2967 75 -S----IYMVDAADTDKLEASR-NELHALIE 99 (101)
Q Consensus 75 -~----i~v~d~~~~~sf~~~~-~~~~~i~~ 99 (101)
. |+|||+++++||+++. .|+.++..
T Consensus 86 ~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~ 116 (195)
T cd01873 86 GRSDVVLLCFSIASPNSLRNVKTMWYPEIRH 116 (195)
T ss_pred CCCCEEEEEEECCChhHHHHHHHHHHHHHHH
Confidence 2 8999999999999997 59888764
No 97
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.72 E-value=2e-17 Score=103.19 Aligned_cols=82 Identities=21% Similarity=0.402 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||++++..+++...+.||.+..+. . +....+.+.+||++|+++++. ++|||.+
T Consensus 5 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 84 (163)
T cd01860 5 VLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT 84 (163)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc
Confidence 34699999999999999999998778899886542 2 455668999999999987665 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++++|+.+..|+.++..+
T Consensus 85 ~~~s~~~~~~~~~~~~~~ 102 (163)
T cd01860 85 SEESFEKAKSWVKELQRN 102 (163)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988654
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.71 E-value=2.6e-17 Score=103.96 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=66.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|+++||||||+++|..+.+.+.+.||++..+. . ++++.+.+.+||++|+++++. ++|||++++
T Consensus 6 iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~ 85 (175)
T cd01870 6 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 85 (175)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH
Confidence 3699999999999999999999889999886553 2 455668999999999987654 788999999
Q ss_pred hhHHHHH-HHHHHHHH
Q psy2967 85 DKLEASR-NELHALIE 99 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~ 99 (101)
++|+++. .|+.++..
T Consensus 86 ~s~~~~~~~~~~~~~~ 101 (175)
T cd01870 86 DSLENIPEKWTPEVKH 101 (175)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999995 58777654
No 99
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=5.9e-17 Score=105.79 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=72.4
Q ss_pred cccccccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------
Q psy2967 6 SGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------ 75 (101)
Q Consensus 6 ~~~~~~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------ 75 (101)
++..++....+.-+.+|++|||||||++++..+.+. .+.||.+.++. . +++..+.+.+||++|+++++.
T Consensus 5 ~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 83 (211)
T PLN03118 5 SGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYY 83 (211)
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence 455566666666666799999999999999988874 68889887663 2 345568999999999988765
Q ss_pred ------EEEEECCChhhHHHHHH-HHHHH
Q psy2967 76 ------IYMVDAADTDKLEASRN-ELHAL 97 (101)
Q Consensus 76 ------i~v~d~~~~~sf~~~~~-~~~~i 97 (101)
|+|||++++++|+++.. |...+
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~ 112 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEV 112 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999976 54443
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=2.6e-17 Score=101.39 Aligned_cols=79 Identities=65% Similarity=1.041 Sum_probs=70.5
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHH
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~ 88 (101)
+|++|||||||++++.++++...+.||++.++..+....+.+.+||++|+++++. ++|+|++++.++.
T Consensus 5 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 84 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALE 84 (159)
T ss_pred EcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence 6889999999999999999999999999998877777779999999999987765 8999999999999
Q ss_pred HHHHHHHHHHH
Q psy2967 89 ASRNELHALIE 99 (101)
Q Consensus 89 ~~~~~~~~i~~ 99 (101)
.+..|+.+++.
T Consensus 85 ~~~~~~~~~~~ 95 (159)
T cd04159 85 AAKNELHDLLE 95 (159)
T ss_pred HHHHHHHHHHc
Confidence 99888887653
No 101
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.70 E-value=2.1e-17 Score=105.41 Aligned_cols=81 Identities=32% Similarity=0.686 Sum_probs=72.0
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|.+++||||+++++..+.+. .+.||.|++...+..+++.+.+||.+|+..++. |||+|.+|+++
T Consensus 18 lilGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~ 96 (175)
T PF00025_consen 18 LILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER 96 (175)
T ss_dssp EEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG
T ss_pred EEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccccee
Confidence 33577799999999999987766 589999999999999999999999999987766 99999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2967 87 LEASRNELHALIEK 100 (101)
Q Consensus 87 f~~~~~~~~~i~~~ 100 (101)
+.+++..+.+++++
T Consensus 97 l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 97 LQEAKEELKELLND 110 (175)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred ecccccchhhhcch
Confidence 99999999998763
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.70 E-value=3.2e-17 Score=107.15 Aligned_cols=81 Identities=17% Similarity=0.291 Sum_probs=69.0
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||++++..+.+...+.||++.++. .+.+..+.+.+||++|++++.. ++|||++
T Consensus 10 vivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~ 89 (210)
T PLN03108 10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (210)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence 34699999999999999999998888999987753 2445568899999999987654 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++++|+++..|+.++..
T Consensus 90 ~~~s~~~l~~~~~~~~~ 106 (210)
T PLN03108 90 RRETFNHLASWLEDARQ 106 (210)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999987754
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=4e-17 Score=103.36 Aligned_cols=80 Identities=28% Similarity=0.592 Sum_probs=68.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|+++||||||++++....+ ..+.||+++....+..+.+.+.+||++|++.++. ++|||++++.+
T Consensus 18 ~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 96 (173)
T cd04154 18 LILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR 96 (173)
T ss_pred EEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH
Confidence 3469999999999999997754 4788999987777666789999999999987654 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.+++.
T Consensus 97 ~~~~~~~~~~~~~ 109 (173)
T cd04154 97 LDDCKRELKELLQ 109 (173)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888754
No 104
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.70 E-value=3.6e-17 Score=103.85 Aligned_cols=79 Identities=32% Similarity=0.536 Sum_probs=69.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|+++||||||++++..+++.. +.||++.++..+....+.+.+||++|+++++. ++|||.+++++|
T Consensus 20 ~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~ 98 (174)
T cd04153 20 IVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERL 98 (174)
T ss_pred EECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 45999999999999999998874 78999988877777889999999999987654 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
.++..|+.++++
T Consensus 99 ~~~~~~l~~~~~ 110 (174)
T cd04153 99 PLTKEELYKMLA 110 (174)
T ss_pred HHHHHHHHHHHh
Confidence 999988888764
No 105
>KOG0395|consensus
Probab=99.70 E-value=7.1e-17 Score=104.91 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=72.0
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
..+|.+|||||+|+.+|..+.|.+.|.||++..+.. +++..+.+.|+|++|++.+.. ++||+++|
T Consensus 7 vvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd 86 (196)
T KOG0395|consen 7 VVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD 86 (196)
T ss_pred EEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC
Confidence 346999999999999999999999999999966643 677789999999999887776 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.||+.+..++.+|++
T Consensus 87 ~~SF~~~~~l~~~I~r 102 (196)
T KOG0395|consen 87 RSSFEEAKQLREQILR 102 (196)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988854
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.70 E-value=5e-17 Score=101.30 Aligned_cols=81 Identities=22% Similarity=0.404 Sum_probs=68.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.||.+.++.. +....+.+.+||++|++++.. ++|||+++
T Consensus 5 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd01863 5 LIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR 84 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 46999999999999999998887788998876542 344568999999999987654 99999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+++|+.+..|+.++.++
T Consensus 85 ~~s~~~~~~~~~~i~~~ 101 (161)
T cd01863 85 RDTFTNLETWLNELETY 101 (161)
T ss_pred HHHHHhHHHHHHHHHHh
Confidence 99999999999887653
No 107
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.70 E-value=4e-17 Score=101.71 Aligned_cols=80 Identities=28% Similarity=0.510 Sum_probs=67.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.+|++.++.. + .+..+.+.+||++|++++.. ++|||+++
T Consensus 5 v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (164)
T smart00175 5 LIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN 84 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 46999999999999999999888888888876542 3 33447899999999987665 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+.+..|+.++..
T Consensus 85 ~~s~~~~~~~l~~~~~ 100 (164)
T smart00175 85 RESFENLKNWLKELRE 100 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998765
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=6.2e-17 Score=101.63 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=67.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.+|++.++. . +.+..+.+.+||++|++.+.. |+|||+++
T Consensus 5 viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (172)
T cd01862 5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN 84 (172)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC
Confidence 4699999999999999999988888888886653 2 445568899999999986654 99999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+++|+++..|.++++..
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (172)
T cd01862 85 PKSFESLDSWRDEFLIQ 101 (172)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998877643
No 109
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.69 E-value=9.6e-17 Score=101.24 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=65.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++++|||||+++|..+.+.+.+.||++..+. .+.+..+.+.+||++|++++.. ++|||++++
T Consensus 5 i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~ 84 (174)
T cd04135 5 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 84 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCH
Confidence 4699999999999999999998888898875443 2445568899999999987655 889999999
Q ss_pred hhHHHHH-HHHHHHHH
Q psy2967 85 DKLEASR-NELHALIE 99 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~ 99 (101)
++|+++. .|+..+..
T Consensus 85 ~s~~~~~~~~~~~l~~ 100 (174)
T cd04135 85 ASFQNVKEEWVPELKE 100 (174)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999996 57766643
No 110
>KOG0075|consensus
Probab=99.69 E-value=6.8e-17 Score=99.83 Aligned_cols=78 Identities=67% Similarity=1.071 Sum_probs=72.9
Q ss_pred ccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHHH
Q psy2967 22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEA 89 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~ 89 (101)
|..++|||||++....+++.++..||+|++.+.+...++.+.+||.+||++|++ +||+|..|++.++.
T Consensus 27 GLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~ 106 (186)
T KOG0075|consen 27 GLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEA 106 (186)
T ss_pred eeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchh
Confidence 445999999999999999999999999999999999999999999999999988 88999999999999
Q ss_pred HHHHHHHHHH
Q psy2967 90 SRNELHALIE 99 (101)
Q Consensus 90 ~~~~~~~i~~ 99 (101)
++..++.++.
T Consensus 107 sr~EL~~LL~ 116 (186)
T KOG0075|consen 107 SRSELHDLLD 116 (186)
T ss_pred hHHHHHHHhc
Confidence 9998888774
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.68 E-value=1.1e-16 Score=102.39 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=65.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E---ecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~---~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
+.+|++|||||||++++..+++.. +.||++.+... + ....+.+.+||++|+++++. ++|||.
T Consensus 7 ~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 85 (183)
T cd04152 7 VMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDS 85 (183)
T ss_pred EEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEEC
Confidence 345889999999999999988874 47888866543 2 23568999999999987654 999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++++++++..|+.++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~ 103 (183)
T cd04152 86 VDVERMEEAKTELHKITR 103 (183)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999989887764
No 112
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.68 E-value=1.2e-16 Score=99.74 Aligned_cols=79 Identities=39% Similarity=0.697 Sum_probs=67.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|+++||||||++++..+.+. .+.||++.++..++..++.+.+||++|+++++. |+|+|.+++.++
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 82 (158)
T cd04151 4 ILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRL 82 (158)
T ss_pred EECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence 3699999999999999888876 568899988877778889999999999987654 899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
..+..|+.++++
T Consensus 83 ~~~~~~~~~~~~ 94 (158)
T cd04151 83 GTAKEELHAMLE 94 (158)
T ss_pred HHHHHHHHHHHh
Confidence 888777766543
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.67 E-value=1.3e-16 Score=99.37 Aligned_cols=79 Identities=30% Similarity=0.635 Sum_probs=66.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEe-cCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
.+|++|||||||++++..+.+. .+.||++.++..+. ...+.+.+||++|+++++. ++|+|.+++.+
T Consensus 4 i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~ 82 (160)
T cd04156 4 LLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR 82 (160)
T ss_pred EEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH
Confidence 3699999999999999999887 45789988776654 3468999999999987644 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|.++..|+.++++
T Consensus 83 ~~~~~~~~~~~~~ 95 (160)
T cd04156 83 LDESQKELKHILK 95 (160)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888764
No 114
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=1.5e-16 Score=99.01 Aligned_cols=79 Identities=35% Similarity=0.669 Sum_probs=69.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|.+|||||||++++..+++ ..+.+|++.....+....+.+.+||++|+++++. ++|||++++++|
T Consensus 4 iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~ 82 (158)
T cd00878 4 ILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERI 82 (158)
T ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 369999999999999998884 4688899988887877889999999999988654 899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
.++..|+..+.+
T Consensus 83 ~~~~~~~~~~~~ 94 (158)
T cd00878 83 EEAKEELHKLLN 94 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999887765
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=3.3e-16 Score=98.27 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=66.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+...+.+|++.++. . +.+..+.+.+||++|++.++. ++|||+++
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 91 (169)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 3699999999999999988888778888875542 2 345558899999999987665 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+.++..
T Consensus 92 ~~s~~~~~~~~~~l~~ 107 (169)
T cd04114 92 EESFRCLPEWLREIEQ 107 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 116
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=2.6e-16 Score=100.91 Aligned_cols=79 Identities=25% Similarity=0.466 Sum_probs=67.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|.+|||||||++++..+.+. .+.||.+.....+..+++.+.+||++|+++++. ++|+|.++++++
T Consensus 22 ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~ 100 (184)
T smart00178 22 FLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERF 100 (184)
T ss_pred EECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHH
Confidence 3588999999999999988765 567888887777777789999999999987654 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 101 ~~~~~~l~~l~~ 112 (184)
T smart00178 101 AESKRELDALLS 112 (184)
T ss_pred HHHHHHHHHHHc
Confidence 999999888764
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.65 E-value=3.1e-16 Score=98.24 Aligned_cols=79 Identities=32% Similarity=0.590 Sum_probs=66.6
Q ss_pred eccCCCcceeeeeccccC------cCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 21 MRKITKGNVTIWPVPLSG------QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+|++|||||||++++... .+.+.+.||++.++..+...+..+.+||++|++.+.. ++|+|.+
T Consensus 5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~ 84 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDST 84 (167)
T ss_pred EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECc
Confidence 699999999999998753 2244678899988877777889999999999987654 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
+++++..+..|+.++++
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (167)
T cd04160 85 DRERFEESKSALEKVLR 101 (167)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999888765
No 118
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=3.9e-16 Score=96.83 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=65.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+...+.++....+. . ..+..+.+.+||++|++.+.. ++|||+++
T Consensus 5 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (162)
T cd04123 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD 84 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC
Confidence 3699999999999999999888777777765442 2 334567899999999987655 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+.+..|+.++..
T Consensus 85 ~~s~~~~~~~~~~i~~ 100 (162)
T cd04123 85 ADSFQKVKKWIKELKQ 100 (162)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 119
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.65 E-value=3.6e-16 Score=93.32 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=57.8
Q ss_pred eEeccCCCcceeeeeccccCcCC--CC----CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFS--QD----MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVD 80 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~--~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d 80 (101)
+.+|++|||||||++++.++.+. .. ..+++......+......+.+||++|++.+.. ++|||
T Consensus 3 ~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D 82 (119)
T PF08477_consen 3 VVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYD 82 (119)
T ss_dssp EEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEE
T ss_pred EEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEc
Confidence 45799999999999999998876 11 22333344444556666799999999986654 99999
Q ss_pred CCChhhHHHHHH---HHHHHH
Q psy2967 81 AADTDKLEASRN---ELHALI 98 (101)
Q Consensus 81 ~~~~~sf~~~~~---~~~~i~ 98 (101)
+++++||+++.. |+..+.
T Consensus 83 ~s~~~s~~~~~~~~~~l~~~~ 103 (119)
T PF08477_consen 83 LSDPESLEYLSQLLKWLKNIR 103 (119)
T ss_dssp CCGHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHH
Confidence 999999999854 455543
No 120
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=2.9e-16 Score=101.60 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=66.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccce-EEEE--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGF-NMRK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~-~~~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||+++|..+++...+.+|++. .... +.+..+.+.+||++|+.+++. |+|||++++
T Consensus 4 vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~ 83 (198)
T cd04147 4 FMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDP 83 (198)
T ss_pred EECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCH
Confidence 4699999999999999999998888888752 2223 334458899999999877654 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
.+|+++..|+.++.+
T Consensus 84 ~s~~~~~~~~~~i~~ 98 (198)
T cd04147 84 ESFEEVERLREEILE 98 (198)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888765
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.65 E-value=2.1e-16 Score=100.30 Aligned_cols=81 Identities=12% Similarity=0.243 Sum_probs=67.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.||++..+. . +....+.+.+||++|+++++. ++|||+++.
T Consensus 6 l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (180)
T cd04137 6 VLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR 85 (180)
T ss_pred EECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH
Confidence 3699999999999999999988888888875432 2 334457889999999987655 999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
.+|+.+..|+..+++.
T Consensus 86 ~~~~~~~~~~~~~~~~ 101 (180)
T cd04137 86 KSFEVVKVIYDKILDM 101 (180)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888753
No 122
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=3.2e-16 Score=96.36 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=68.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.+|.+.++.. .....+.+.+||++|++.+.. ++|||.++
T Consensus 5 ~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 84 (159)
T cd00154 5 LIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN 84 (159)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 46999999999999999999988888888877653 234568999999999987655 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++++.+..|+..+..
T Consensus 85 ~~~~~~~~~~~~~~~~ 100 (159)
T cd00154 85 RESFENLDKWLKELKE 100 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 123
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=2.9e-16 Score=97.68 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=68.0
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
+|++|||||||++++..+.+...+.++++..+.. .++..+.+.+||++|++++.. ++|||++++.
T Consensus 6 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 85 (164)
T cd04139 6 VGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME 85 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH
Confidence 6999999999999999999998888888755533 455678999999999987766 8999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy2967 86 KLEASRNELHALIE 99 (101)
Q Consensus 86 sf~~~~~~~~~i~~ 99 (101)
+|+++..|+..+..
T Consensus 86 s~~~~~~~~~~~~~ 99 (164)
T cd04139 86 SFTATAEFREQILR 99 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887765
No 124
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.64 E-value=4.6e-16 Score=102.55 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=64.7
Q ss_pred EeccCCCcceeeeeccccCcCC-CCCCCccceEE--EE--EecCcEEEEEEeeCCCCcc------c-e----EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRF------R-S----IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~------~-~----i~v~d~~~ 83 (101)
.+|++|||||||+++|..+.+. ..+.||.+.++ .. +++....+.+||++|++.+ + . ++|||++|
T Consensus 5 lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td 84 (221)
T cd04148 5 MLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTD 84 (221)
T ss_pred EECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCC
Confidence 4699999999999999988886 67888875232 33 4566789999999999722 2 2 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
++||+++..|+.++.+
T Consensus 85 ~~S~~~~~~~~~~l~~ 100 (221)
T cd04148 85 RSSFERASELRIQLRR 100 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 125
>KOG1673|consensus
Probab=99.64 E-value=3.2e-16 Score=97.72 Aligned_cols=78 Identities=18% Similarity=0.445 Sum_probs=71.0
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
+||+..|||||+.+|+++++.+++..|.|+++.. +.+..+.+.|||.+|++++.. +|+||++.+
T Consensus 26 lGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r 105 (205)
T KOG1673|consen 26 LGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR 105 (205)
T ss_pred ecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch
Confidence 5999999999999999999988999999988842 567789999999999998887 899999999
Q ss_pred hhHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALI 98 (101)
Q Consensus 85 ~sf~~~~~~~~~i~ 98 (101)
.+++.++.|+.+..
T Consensus 106 ~TLnSi~~WY~QAr 119 (205)
T KOG1673|consen 106 STLNSIKEWYRQAR 119 (205)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 126
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=9.5e-16 Score=96.45 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=61.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
.+|+++||||||++++..+.+.+.+.++...... .+....+.+.+||++|++.++. ++|||+++++
T Consensus 5 ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~ 84 (166)
T cd01893 5 LIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS 84 (166)
T ss_pred EECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH
Confidence 4699999999999999999997665544322111 2445779999999999986543 9999999999
Q ss_pred hHHHHH-HHHHHHHH
Q psy2967 86 KLEASR-NELHALIE 99 (101)
Q Consensus 86 sf~~~~-~~~~~i~~ 99 (101)
+|+++. .|+..+.+
T Consensus 85 s~~~~~~~~~~~i~~ 99 (166)
T cd01893 85 TLERIRTKWLPLIRR 99 (166)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999985 57776653
No 127
>KOG4252|consensus
Probab=99.62 E-value=1.8e-17 Score=105.51 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=76.1
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EE
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IY 77 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~ 77 (101)
..+.-+.+|..+|||+|+++||+.|-|.+.|..|+|.++.. +....+.+.+||++||+.|.. ++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 33444556999999999999999999999999999998853 556778899999999998877 89
Q ss_pred EEECCChhhHHHHHHHHHHHHHh
Q psy2967 78 MVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
||+.+|+.||+.+..|.+++..+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e 121 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKE 121 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 128
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=2.2e-15 Score=94.47 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=64.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||...... ...+..+.+.+||++|++++.. ++|||+++
T Consensus 4 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (171)
T cd00157 4 VVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS 83 (171)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC
Confidence 34699999999999999999987778888764442 2445678999999999986444 89999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+++|.++. .|+..+..
T Consensus 84 ~~s~~~~~~~~~~~~~~ 100 (171)
T cd00157 84 PSSFENVKTKWIPEIRH 100 (171)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99998875 47766654
No 129
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=7.8e-16 Score=98.55 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=68.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
..+|++|||||||++++..+.+. .+.||.+.....+...+..+.+||++|+++++. ++|+|.+++++
T Consensus 23 ~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s 101 (190)
T cd00879 23 LFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER 101 (190)
T ss_pred EEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH
Confidence 34688999999999999988875 688899887777777789999999999987643 88999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 102 ~~~~~~~~~~i~~ 114 (190)
T cd00879 102 FQESKEELDSLLS 114 (190)
T ss_pred HHHHHHHHHHHHc
Confidence 9999989888764
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.61 E-value=1.1e-15 Score=99.66 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=66.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||+++|..+.+.+.+.||++..+.. . ....+++.+||++|+++++. ++|||.+
T Consensus 9 vv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~ 88 (219)
T COG1100 9 VVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDST 88 (219)
T ss_pred EEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 446999999999999999999999999999876643 2 22378999999999999866 9999999
Q ss_pred Chhh-HHHHHHHHHHHHH
Q psy2967 83 DTDK-LEASRNELHALIE 99 (101)
Q Consensus 83 ~~~s-f~~~~~~~~~i~~ 99 (101)
++.+ ++....|..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~ 106 (219)
T COG1100 89 LRESSDELTEEWLEELRE 106 (219)
T ss_pred cchhhhHHHHHHHHHHHH
Confidence 9555 5555778887765
No 131
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.61 E-value=2.7e-15 Score=96.29 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=66.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+.+.+.+|++..+.. +.+..+.+.+||++|++.+.. ++|||++++
T Consensus 6 ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~ 85 (187)
T cd04129 6 IVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTP 85 (187)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCH
Confidence 36899999999999999999888888888765532 345567899999999876643 888999999
Q ss_pred hhHHHHH-HHHHHHHHh
Q psy2967 85 DKLEASR-NELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~~ 100 (101)
++|+++. .|+.++..+
T Consensus 86 ~s~~~~~~~~~~~i~~~ 102 (187)
T cd04129 86 DSLENVRTKWIEEVRRY 102 (187)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 9999996 588887653
No 132
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=2.1e-15 Score=93.35 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=66.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE-E--ecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|+++||||||++++..+.+...+.|+.+..+.. . ....+.+.+||++|++.+.. ++|||++++
T Consensus 4 i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 83 (160)
T cd00876 4 VLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR 83 (160)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 46999999999999999988888888888733322 3 33468899999999886554 889999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
++++++..|...+.+.
T Consensus 84 ~s~~~~~~~~~~~~~~ 99 (160)
T cd00876 84 ESFEEIKGYREQILRV 99 (160)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998887653
No 133
>KOG0074|consensus
Probab=99.58 E-value=1.1e-14 Score=89.77 Aligned_cols=79 Identities=33% Similarity=0.594 Sum_probs=68.4
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCc-EEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.|-.++|||+|++++...+ +....||.|++.+.+...+ +++.+||.+||...|. |||.|.+|+..|
T Consensus 23 lGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krf 101 (185)
T KOG0074|consen 23 LGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRF 101 (185)
T ss_pred EecCCCcchhHHHHHccCC-hhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhH
Confidence 4556999999999999665 4478999999999887665 9999999999987766 999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2967 88 EASRNELHALIEK 100 (101)
Q Consensus 88 ~~~~~~~~~i~~~ 100 (101)
+++...+.++++.
T Consensus 102 eE~~~el~ELlee 114 (185)
T KOG0074|consen 102 EEISEELVELLEE 114 (185)
T ss_pred HHHHHHHHHHhhh
Confidence 9999888888753
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.53 E-value=2.5e-14 Score=90.09 Aligned_cols=79 Identities=37% Similarity=0.635 Sum_probs=66.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|++|||||||++++.+..+. .+.||.|++...+...+..+.+||++|+.++.. ++|+|.++..+|
T Consensus 19 i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~ 97 (173)
T cd04155 19 ILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRL 97 (173)
T ss_pred EEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence 3588999999999999987665 578899988877777789999999999876533 899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
.....|+..+++
T Consensus 98 ~~~~~~~~~~~~ 109 (173)
T cd04155 98 EEAGAELVELLE 109 (173)
T ss_pred HHHHHHHHHHHh
Confidence 998888777653
No 135
>KOG0096|consensus
Probab=99.50 E-value=9.3e-14 Score=89.00 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=75.2
Q ss_pred cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEEE---ec-CcEEEEEEeeCCCCccce------------E
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI---TK-GNVTIKVWDIGGQPRFRS------------I 76 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~---~~-~~~~~~i~D~~G~~~~~~------------i 76 (101)
.|++.++ +|+.|.|||++++|...++|...|.+|+|...... ++ +.+++.+||++|++.+-- |
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 5677776 49999999999999999999999999999888652 22 359999999999997644 9
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh
Q psy2967 77 YMVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
++||++.+-++.++..|..++...
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv 111 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRV 111 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHH
Confidence 999999999999999999887653
No 136
>KOG0072|consensus
Probab=99.47 E-value=1.6e-13 Score=84.80 Aligned_cols=79 Identities=32% Similarity=0.578 Sum_probs=68.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|..|+|||++++|+.-++.. ...||+|++.+.+..++.++++||.+|+...+. |+|+|.+|++..
T Consensus 23 ilgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dri 101 (182)
T KOG0072|consen 23 ILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRI 101 (182)
T ss_pred EeeccCCCeeEEEEEcccCccc-ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhh
Confidence 3455599999999999988877 678999999999999999999999999987766 999999999998
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
..+...+..+++
T Consensus 102 s~a~~el~~mL~ 113 (182)
T KOG0072|consen 102 SIAGVELYSMLQ 113 (182)
T ss_pred hhhHHHHHHHhc
Confidence 888877766654
No 137
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.45 E-value=1.7e-13 Score=89.34 Aligned_cols=79 Identities=15% Similarity=0.342 Sum_probs=61.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEe----cCcEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRS-------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~D~~G~~~~~~-------------i~v~d~~ 82 (101)
.+|+++||||+|++++..+++...+.++ ..+..... .++..+.+||++|+++++. |||+|.+
T Consensus 5 l~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~ 83 (203)
T cd04105 5 LLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSA 83 (203)
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECc
Confidence 3688999999999999999887655444 33333322 3568899999999998766 9999999
Q ss_pred Ch-hhHHHHHHHHHHHHH
Q psy2967 83 DT-DKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~-~sf~~~~~~~~~i~~ 99 (101)
+. +++..+..|+.+++.
T Consensus 84 ~~~~~~~~~~~~l~~il~ 101 (203)
T cd04105 84 TFQKNLKDVAEFLYDILT 101 (203)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 98 788888888877653
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.43 E-value=7e-13 Score=83.04 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=58.0
Q ss_pred EeccCCCcceeeeeccccCcCCCC-C-CCccceEEEEEecCcEEEEEEeeCCCC------cc----c--------e---E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQP------RF----R--------S---I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~i~D~~G~~------~~----~--------~---i 76 (101)
.+|.+|||||||++++.++.+... + .+|..........+++.+.+|||+|+. +. . . +
T Consensus 5 ~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l 84 (168)
T cd01897 5 IAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVL 84 (168)
T ss_pred EEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEE
Confidence 369999999999999998876432 2 234555555566677999999999973 10 0 1 8
Q ss_pred EEEECCChhhH--HHHHHHHHHHHH
Q psy2967 77 YMVDAADTDKL--EASRNELHALIE 99 (101)
Q Consensus 77 ~v~d~~~~~sf--~~~~~~~~~i~~ 99 (101)
+|+|.+++.++ ++...|+.++.+
T Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~l~~ 109 (168)
T cd01897 85 FLFDPSETCGYSLEEQLSLFEEIKP 109 (168)
T ss_pred EEEeCCcccccchHHHHHHHHHHHh
Confidence 89999987654 666678777654
No 139
>PTZ00099 rab6; Provisional
Probab=99.39 E-value=1.6e-12 Score=83.12 Aligned_cols=62 Identities=26% Similarity=0.609 Sum_probs=53.7
Q ss_pred CcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 38 GQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 38 ~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
+.|.++|.||+|.++.. ++++.+.+.+|||+|+++++. |+|||+++++||+++..|+.++++
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 56888999999987742 456679999999999998776 999999999999999999998875
No 140
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.38 E-value=1.3e-12 Score=81.82 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=54.6
Q ss_pred eccCCCcceeeeeccccCcCCC-C-CCCccceEEEEEecCc-EEEEEEeeCCCC----cc--------c----e---EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-D-MIPTVGFNMRKITKGN-VTIKVWDIGGQP----RF--------R----S---IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~----~~--------~----~---i~v 78 (101)
+|.+|||||||++++.+.+... . ..+|.......+...+ ..+.+|||+|+. .. + . ++|
T Consensus 6 vG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v 85 (170)
T cd01898 6 VGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHV 85 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEE
Confidence 6899999999999998654321 1 1223333333334444 489999999963 11 0 0 889
Q ss_pred EECCCh-hhHHHHHHHHHHHHH
Q psy2967 79 VDAADT-DKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~~~-~sf~~~~~~~~~i~~ 99 (101)
+|++++ ++++.+..|.+++.+
T Consensus 86 ~D~~~~~~~~~~~~~~~~~l~~ 107 (170)
T cd01898 86 IDLSGDDDPVEDYKTIRNELEL 107 (170)
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 999999 799999888887754
No 141
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.36 E-value=2.9e-12 Score=78.18 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCc--EEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGN--VTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|.+|+|||||++++..+.+...+.++++.++.. +...+ +.+.+||++|+++++. ++++|+..
T Consensus 6 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~ 85 (161)
T TIGR00231 6 IVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVI 85 (161)
T ss_pred EECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEee
Confidence 35899999999999999998877787888766643 44444 8899999999987743 78899988
Q ss_pred h-hhHHHHH-HHHHHHHH
Q psy2967 84 T-DKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~-~sf~~~~-~~~~~i~~ 99 (101)
. .++.+.. .|...+..
T Consensus 86 ~v~~~~~~~~~~~~~~~~ 103 (161)
T TIGR00231 86 LVLDVEEILEKQTKEIIH 103 (161)
T ss_pred eehhhhhHhHHHHHHHHH
Confidence 8 7777775 66665543
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.35 E-value=8.3e-13 Score=82.05 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=48.9
Q ss_pred eccCCCcceeeeeccccC---cCCCCCC--CccceEEEEEecC-cEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 21 MRKITKGNVTIWPVPLSG---QFSQDMI--PTVGFNMRKITKG-NVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~---~~~~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+|.++||||||++++.+. .+..++. .|+...+..+... +..+.+|||+|++++.. ++|+|.+
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECC
Confidence 599999999999999863 3333332 3444444444433 67899999999987754 8999998
Q ss_pred C---hhhHHHH
Q psy2967 83 D---TDKLEAS 90 (101)
Q Consensus 83 ~---~~sf~~~ 90 (101)
+ +++++.+
T Consensus 86 ~~~~~~~~~~~ 96 (164)
T cd04171 86 EGIMPQTREHL 96 (164)
T ss_pred CCccHhHHHHH
Confidence 7 4454443
No 143
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.31 E-value=3.5e-12 Score=80.14 Aligned_cols=79 Identities=22% Similarity=0.186 Sum_probs=56.5
Q ss_pred eccCCCcceeeeeccccCcC-CCCC-CCccceEEEEEecC-cEEEEEEeeCCCCc-------c--------ce----EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQF-SQDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPR-------F--------RS----IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~-~~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~-------~--------~~----i~v 78 (101)
+|++|||||||++++.+.++ ...+ .+|.......+..+ +..+.+||++|... . +. ++|
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v 81 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHV 81 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEE
Confidence 58999999999999998764 2222 34445544445555 78899999999621 1 01 889
Q ss_pred EECCCh------hhHHHHHHHHHHHHH
Q psy2967 79 VDAADT------DKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~~~------~sf~~~~~~~~~i~~ 99 (101)
+|.+++ .++++...|..++..
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (176)
T cd01881 82 VDASEDDDIGGVDPLEDYEILNAELKL 108 (176)
T ss_pred EeccCCccccccCHHHHHHHHHHHHHH
Confidence 999998 578888877777653
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.28 E-value=5.3e-12 Score=76.07 Aligned_cols=72 Identities=26% Similarity=0.508 Sum_probs=56.8
Q ss_pred eccCCCcceeeeeccccCcC-CCCCCCccceEEEEEe----cCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQF-SQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~----~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+|++|+|||||++++..... .....+|. .+..... .....+.+||++|+..+.. ++|+|.++
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999998776 45566665 5443322 3478999999999875443 89999999
Q ss_pred hhhHHHHHHH
Q psy2967 84 TDKLEASRNE 93 (101)
Q Consensus 84 ~~sf~~~~~~ 93 (101)
..+++.+..|
T Consensus 81 ~~~~~~~~~~ 90 (157)
T cd00882 81 RESFENVKEW 90 (157)
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.27 E-value=7.3e-12 Score=81.12 Aligned_cols=83 Identities=24% Similarity=0.321 Sum_probs=57.1
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEEEecCc-EEEEEEeeCCCCc---------cc-------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRKITKGN-VTIKVWDIGGQPR---------FR------- 74 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~---------~~------- 74 (101)
++.+.+ +|++|||||||++++....+.. .+.+|+......+...+ ..+.+||++|... +.
T Consensus 41 ~~~I~i-iG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 119 (204)
T cd01878 41 IPTVAL-VGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVA 119 (204)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence 444443 6999999999999999876432 23455555544444333 4899999999732 21
Q ss_pred e----EEEEECCChhhHHHHHHHHHHH
Q psy2967 75 S----IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 75 ~----i~v~d~~~~~sf~~~~~~~~~i 97 (101)
. ++|+|.+++.++.....|...+
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l 146 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVL 146 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHH
Confidence 1 8899999999888776665443
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.26 E-value=1.1e-11 Score=77.45 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=47.4
Q ss_pred eccCCCcceeeeeccccCcCCCCCCC--ccceEEEEEec---CcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIP--TVGFNMRKITK---GNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+|.+|||||||++++..+++...+.+ |.......+.. .+..+.+|||+|++.+.. ++|+|.++
T Consensus 6 iG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~ 85 (168)
T cd01887 6 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADD 85 (168)
T ss_pred EecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 68899999999999998887754333 32233233433 478899999999977654 88999987
Q ss_pred h
Q psy2967 84 T 84 (101)
Q Consensus 84 ~ 84 (101)
.
T Consensus 86 ~ 86 (168)
T cd01887 86 G 86 (168)
T ss_pred C
Confidence 4
No 147
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.26 E-value=8e-12 Score=79.01 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=52.9
Q ss_pred eccCCCcceeeeeccccCc-------CCCCCCCcc------ceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSGQ-------FSQDMIPTV------GFNMR----KI-----TKGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~-------~~~~~~~t~------~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|.++||||||+++|+... +...+.++. |..+. .+ +.+++.+.+|||+|++++..
T Consensus 6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 85 (179)
T cd01890 6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVS 85 (179)
T ss_pred EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHH
Confidence 5899999999999998632 223343433 33332 12 45678999999999998765
Q ss_pred ---------EEEEECCChhhHHHHHHHH
Q psy2967 76 ---------IYMVDAADTDKLEASRNEL 94 (101)
Q Consensus 76 ---------i~v~d~~~~~sf~~~~~~~ 94 (101)
|+|||.++..+++....|.
T Consensus 86 ~~~~~ad~~i~v~D~~~~~~~~~~~~~~ 113 (179)
T cd01890 86 RSLAACEGALLLVDATQGVEAQTLANFY 113 (179)
T ss_pred HHHHhcCeEEEEEECCCCccHhhHHHHH
Confidence 9999999987776665554
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.25 E-value=5.6e-12 Score=81.28 Aligned_cols=64 Identities=22% Similarity=0.431 Sum_probs=48.7
Q ss_pred eccCCCcceeeeecccc--CcCCCCC------------CCccceEE----EEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQDM------------IPTVGFNM----RKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~~~------------~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|.++||||||++++.. +.|...+ .++.|..+ ..+..+...+.+||++|+++|..
T Consensus 8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 87 (194)
T cd01891 8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLS 87 (194)
T ss_pred EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHH
Confidence 59999999999999997 5665443 23344333 23667889999999999998765
Q ss_pred -----EEEEECCCh
Q psy2967 76 -----IYMVDAADT 84 (101)
Q Consensus 76 -----i~v~d~~~~ 84 (101)
++|||.++.
T Consensus 88 ~~d~~ilV~d~~~~ 101 (194)
T cd01891 88 MVDGVLLLVDASEG 101 (194)
T ss_pred hcCEEEEEEECCCC
Confidence 889999874
No 149
>KOG0076|consensus
Probab=99.25 E-value=3.9e-12 Score=80.60 Aligned_cols=82 Identities=30% Similarity=0.603 Sum_probs=66.1
Q ss_pred cceeeeEeccCCCcceeeeeccccC-------cCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce-----------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSG-------QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------- 75 (101)
+.++|+ .++|||+|+.+.... -.+....||+|.+..++...+..+.+||.+||+..++
T Consensus 20 vlIlgl----dnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ 95 (197)
T KOG0076|consen 20 VLILGL----DNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHG 95 (197)
T ss_pred heeecc----ccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhce
Confidence 455555 599999999876532 1223567999999988877799999999999998877
Q ss_pred -EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|+++|.+|+++|++.+..++.+.+
T Consensus 96 ii~viDa~~~eR~~~~~t~~~~v~~ 120 (197)
T KOG0076|consen 96 IIYVIDATDRERFEESKTAFEKVVE 120 (197)
T ss_pred eEEeecCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887777654
No 150
>KOG4423|consensus
Probab=99.23 E-value=3.7e-14 Score=90.77 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=70.6
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--Ee---cCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--IT---KGNVTIKVWDIGGQPRFRS------------IYMVD 80 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~------------i~v~d 80 (101)
-+.+|+.++|||++++|+....|...|..|||.++.. +. ...+++++||.+||++|-. .+|||
T Consensus 28 ~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfd 107 (229)
T KOG4423|consen 28 VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFD 107 (229)
T ss_pred hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEE
Confidence 4567889999999999999999999999999988732 33 3347899999999998765 88999
Q ss_pred CCChhhHHHHHHHHHHHHHh
Q psy2967 81 AADTDKLEASRNELHALIEK 100 (101)
Q Consensus 81 ~~~~~sf~~~~~~~~~i~~~ 100 (101)
+++.-+|+.+.+|.+++-+.
T Consensus 108 vt~s~tfe~~skwkqdldsk 127 (229)
T KOG4423|consen 108 VTRSLTFEPVSKWKQDLDSK 127 (229)
T ss_pred ccccccccHHHHHHHhccCc
Confidence 99999999999999987543
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.22 E-value=2.9e-11 Score=86.99 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=55.0
Q ss_pred eccCCCcceeeeeccccCc--CCCCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|++|||||||++++.+.+ +...+..|.. .....+..++..+.+|||+|+..+.. ++
T Consensus 209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~ 288 (442)
T TIGR00450 209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIY 288 (442)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEE
Confidence 5999999999999999865 3444444432 22234666778899999999843221 88
Q ss_pred EEECCChhhHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|||.+++.+++.. |+.++.
T Consensus 289 V~D~s~~~s~~~~--~l~~~~ 307 (442)
T TIGR00450 289 VLDASQPLTKDDF--LIIDLN 307 (442)
T ss_pred EEECCCCCChhHH--HHHHHh
Confidence 9999999888775 766653
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.22 E-value=1.7e-12 Score=79.50 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=47.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCC-----ccc-------e----EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP-----RFR-------S----IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~-------~----i~v~d~~~ 83 (101)
.+|++|||||||++++.++.+ .+.+|++.++.. .+||++|+. .++ . ++|||+++
T Consensus 5 liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~--------~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~ 74 (142)
T TIGR02528 5 FIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYND--------GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATD 74 (142)
T ss_pred EECCCCCCHHHHHHHHcCCcc--ccccceeEEEcC--------eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCC
Confidence 369999999999999998765 356776655422 689999982 232 1 89999999
Q ss_pred hhhHHHHHHHH
Q psy2967 84 TDKLEASRNEL 94 (101)
Q Consensus 84 ~~sf~~~~~~~ 94 (101)
+.++... .|.
T Consensus 75 ~~s~~~~-~~~ 84 (142)
T TIGR02528 75 PESRFPP-GFA 84 (142)
T ss_pred CCcCCCh-hHH
Confidence 9998653 444
No 153
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=4.9e-11 Score=83.15 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEec-CcEEEEEEeeCCCCc-------c-----ce---
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITK-GNVTIKVWDIGGQPR-------F-----RS--- 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~-----~~--- 75 (101)
++-+++ ||.||||||||++++...... ..| ..|...+...+.. +...+.+||++|.-. . +.
T Consensus 158 ~adVgl-VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGL-VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEE-EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 344443 599999999999999864322 122 2455555544544 557899999998631 0 00
Q ss_pred ----EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 ----IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 ----i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
++|+|++++++++++..|..++..
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~ 264 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEK 264 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 889999998899999999888754
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.20 E-value=2.3e-11 Score=85.22 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=57.2
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCC-C-CCCCccceEEEEEec-CcEEEEEEeeCCCC---------ccce------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-Q-DMIPTVGFNMRKITK-GNVTIKVWDIGGQP---------RFRS------ 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~-~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~---------~~~~------ 75 (101)
.|.+.+ +|.+|||||||++++.+.++. . ...+|.......+.. .+..+.+|||+|.. .|+.
T Consensus 189 ~~~Val-vG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 189 VPTVAL-VGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 344443 599999999999999987643 2 234666665555554 45789999999972 2221
Q ss_pred -----EEEEECCChhhHHHHHHHHH
Q psy2967 76 -----IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 76 -----i~v~d~~~~~sf~~~~~~~~ 95 (101)
++|+|.+++.+++....|..
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~ 292 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEK 292 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHH
Confidence 88999999988877755543
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.19 E-value=4.1e-11 Score=74.06 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=47.9
Q ss_pred eccCCCcceeeeeccccCcCCCCCCC--ccceEEEEEecCcEEEEEEeeCCCCccc----------------e----EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFR----------------S----IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~----------------~----i~v 78 (101)
+|.+|||||||++++.+..+.....| |.......+...+..+.+|||+|+..+. . ++|
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 81 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNV 81 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEE
Confidence 58999999999999998764433333 3334444455556789999999986432 1 889
Q ss_pred EECCChhhH
Q psy2967 79 VDAADTDKL 87 (101)
Q Consensus 79 ~d~~~~~sf 87 (101)
+|.++.++.
T Consensus 82 ~d~~~~~~~ 90 (158)
T cd01879 82 VDATNLERN 90 (158)
T ss_pred eeCCcchhH
Confidence 999886553
No 156
>PRK15494 era GTPase Era; Provisional
Probab=99.15 E-value=9.1e-11 Score=81.90 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=38.8
Q ss_pred EeccCCCcceeeeeccccCcCC---CCCCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (101)
.+|.+|||||||++++.+..+. ....+|.......+..++..+.+|||+|+.
T Consensus 57 ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~ 111 (339)
T PRK15494 57 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF 111 (339)
T ss_pred EEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC
Confidence 3599999999999999987764 233445444444456667789999999984
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.13 E-value=2.4e-10 Score=79.55 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred ceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCc-EEEEEEeeCCCCccc----------------e
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQPRFR----------------S 75 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----------------~ 75 (101)
+-+++ ||.++||||||++++...+.. .+| .+|...+...+...+ ..+.+||++|..... .
T Consensus 158 adV~l-vG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGL-VGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEE-EcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 33443 599999999999999976421 122 234444444444444 889999999974211 0
Q ss_pred ---EEEEECCCh---hhHHHHHHHHHHHH
Q psy2967 76 ---IYMVDAADT---DKLEASRNELHALI 98 (101)
Q Consensus 76 ---i~v~d~~~~---~sf~~~~~~~~~i~ 98 (101)
++|+|+++. ++++.+..|.+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~ 265 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELK 265 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHH
Confidence 889999987 67888877777664
No 158
>KOG0077|consensus
Probab=99.13 E-value=2.9e-11 Score=76.25 Aligned_cols=81 Identities=26% Similarity=0.545 Sum_probs=69.3
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
+..+|+. |+|||||++.+.++... ++.||.....+++...+++++.+|.+|+..-+. ++.+|+
T Consensus 23 llFlGLD----NAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 23 LLFLGLD----NAGKTTLLHMLKDDRLG-QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred EEEEeec----CCchhhHHHHHcccccc-ccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 5566665 99999999999987765 789999988888889999999999999865443 889999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
.|+++|.+++..++.++.
T Consensus 98 ~d~er~~es~~eld~ll~ 115 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLS 115 (193)
T ss_pred hhHHHhHHHHHHHHHHHh
Confidence 999999999998887764
No 159
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.09 E-value=1.2e-10 Score=77.56 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=49.0
Q ss_pred EeccCCCcceeeeeccccCcCCCC---CCCccceEEEEEe-cCcEEEEEEeeCCCCccce-----------------EEE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQD---MIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS-----------------IYM 78 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----------------i~v 78 (101)
-+|++++||||+.+-...+-.+.+ ..||+..+...+. ...+.+++||++||..+-. |||
T Consensus 4 LmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV 83 (232)
T PF04670_consen 4 LMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYV 83 (232)
T ss_dssp EEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEE
T ss_pred EEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEE
Confidence 369999999999988776543322 3588888877775 5678999999999974422 999
Q ss_pred EECCChhhHHHHHHHHHHHH
Q psy2967 79 VDAADTDKLEASRNELHALI 98 (101)
Q Consensus 79 ~d~~~~~sf~~~~~~~~~i~ 98 (101)
+|+.+.+ +.+...++.+.+
T Consensus 84 ~D~qs~~-~~~~l~~~~~~i 102 (232)
T PF04670_consen 84 FDAQSDD-YDEDLAYLSDCI 102 (232)
T ss_dssp EETT-ST-CHHHHHHHHHHH
T ss_pred EEccccc-HHHHHHHHHHHH
Confidence 9999654 344434444433
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.08 E-value=3.1e-11 Score=77.94 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=36.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG 69 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 69 (101)
.+|.+|||||||++++.++.+...+.|+.......+... .+.+||++|
T Consensus 14 i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G 61 (201)
T PRK04213 14 FVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPG 61 (201)
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCc
Confidence 369999999999999998887665666554443334333 589999999
No 161
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.07 E-value=5.3e-10 Score=68.72 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=51.3
Q ss_pred EeccCCCcceeeeeccccCcCC--CCCCCc-cceEEEEEecCcEEEEEEeeCCCCccce--------------------E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS--QDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i 76 (101)
.+|++|+|||||++++...... ..+.++ .......+...+..+.+||++|...+.. +
T Consensus 6 l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v 85 (157)
T cd04164 6 IVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVL 85 (157)
T ss_pred EECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence 3599999999999999987642 222222 2222234455678899999999754321 8
Q ss_pred EEEECCChhhHHHHHHH
Q psy2967 77 YMVDAADTDKLEASRNE 93 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~ 93 (101)
+|+|++++.+..+...+
T Consensus 86 ~v~d~~~~~~~~~~~~~ 102 (157)
T cd04164 86 FVIDASRGLDEEDLEIL 102 (157)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999998887776554
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.07 E-value=4.8e-10 Score=80.39 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=54.1
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEEEecCc-EEEEEEeeCCCCc---------cce-----
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRKITKGN-VTIKVWDIGGQPR---------FRS----- 75 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~---------~~~----- 75 (101)
.+|.+.+ +|.+|||||||++++.+.++.. ....|.......+...+ ..+.+|||+|..+ |..
T Consensus 196 ~~p~Val-VG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 196 DVPTVSL-VGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CCCEEEE-ECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 3566554 6999999999999999865431 22344444444444333 3788999999843 211
Q ss_pred ------EEEEECCChhhHHHHHHH
Q psy2967 76 ------IYMVDAADTDKLEASRNE 93 (101)
Q Consensus 76 ------i~v~d~~~~~sf~~~~~~ 93 (101)
++|+|.+++.+++.+..|
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v 298 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAV 298 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHH
Confidence 889999999888776433
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.05 E-value=4e-10 Score=81.28 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=53.0
Q ss_pred eccCCCcceeeeeccccCcC--CCCCCCc-cceEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.+|||||||++++.+.+. ...+..| .......+...+..+.+|||+|...+.. ++
T Consensus 221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~ 300 (449)
T PRK05291 221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLL 300 (449)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEE
Confidence 59999999999999998653 3333332 2333344566778899999999864321 88
Q ss_pred EEECCChhhHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNEL 94 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~ 94 (101)
|||.+++.++++...|.
T Consensus 301 VvD~s~~~s~~~~~~l~ 317 (449)
T PRK05291 301 VLDASEPLTEEDDEILE 317 (449)
T ss_pred EecCCCCCChhHHHHHH
Confidence 99999998887665443
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=1.1e-09 Score=79.28 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=49.8
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCC-CCCCCccceE--EEEEecCcEEEEEEeeCCCCcc--------c--------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRF--------R-------- 74 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~--------~-------- 74 (101)
+|.+. .+|.+|||||||+++++++.+. ....|.+..+ ...+...+..+.+|||+|.+.. .
T Consensus 38 ~~~V~-IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVA-VVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEE-EEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 45554 3699999999999999987642 1222322222 2234556678999999997631 1
Q ss_pred e----EEEEECCChhhHH
Q psy2967 75 S----IYMVDAADTDKLE 88 (101)
Q Consensus 75 ~----i~v~d~~~~~sf~ 88 (101)
. |+|+|.++..++.
T Consensus 117 ~aD~il~VvD~~~~~s~~ 134 (472)
T PRK03003 117 TADAVLFVVDATVGATAT 134 (472)
T ss_pred hCCEEEEEEECCCCCCHH
Confidence 1 9999999886653
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.00 E-value=8.8e-10 Score=67.80 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred eccCCCcceeeeeccccCc--CCCCCCCc-cceEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.+|||||||++++.... +...+.++ ...........+..+.+||++|...+.. ++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 82 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILF 82 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEE
Confidence 6999999999999999764 22233332 2233344566678899999999876321 88
Q ss_pred EEECCChhhHHH
Q psy2967 78 MVDAADTDKLEA 89 (101)
Q Consensus 78 v~d~~~~~sf~~ 89 (101)
|+|..+..+...
T Consensus 83 v~d~~~~~~~~~ 94 (157)
T cd01894 83 VVDGREGLTPAD 94 (157)
T ss_pred EEeccccCCccH
Confidence 899887654433
No 166
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.00 E-value=7.2e-10 Score=82.20 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=54.3
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCCC----CCCccceEEEEEec----------------CcEEEEEEeeCCCCc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQD----MIPTVGFNMRKITK----------------GNVTIKVWDIGGQPR 72 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~ 72 (101)
..|++.+ +|.+++|||||++++.+..+... +.+++|..+...+. +...+.+|||+|++.
T Consensus 3 r~piV~I-iG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSV-LGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEE-ECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4566654 79999999999999998766533 33455544422110 112388999999998
Q ss_pred cce------------EEEEECCC---hhhHHHHH
Q psy2967 73 FRS------------IYMVDAAD---TDKLEASR 91 (101)
Q Consensus 73 ~~~------------i~v~d~~~---~~sf~~~~ 91 (101)
|.. ++|+|.++ +++++.+.
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~ 115 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALN 115 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH
Confidence 766 99999987 66776654
No 167
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=1.7e-09 Score=77.46 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=55.1
Q ss_pred eeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecC-cEEEEEEeeCCCCcc------------ce-----
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRF------------RS----- 75 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~------------~~----- 75 (101)
-+++ ||.||||||||+++++..+.. .+| -.|...++-.+... +..+.+||++|...- +.
T Consensus 160 dVgl-VG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGL-VGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEE-EcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 4443 599999999999999975421 122 23444554444444 678999999996320 00
Q ss_pred --EEEEECCCh---hhHHHHHHHHHHHHH
Q psy2967 76 --IYMVDAADT---DKLEASRNELHALIE 99 (101)
Q Consensus 76 --i~v~d~~~~---~sf~~~~~~~~~i~~ 99 (101)
++|+|+++. +++++...|.+++..
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~ 267 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKL 267 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhh
Confidence 889999864 677777777766643
No 168
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.99 E-value=8.9e-10 Score=70.59 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=39.4
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE-EecCcEEEEEEeeCCC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~ 70 (101)
.|-++ .+|.+|||||||++++..+++...+.++.+..... ....+..+.+||++|.
T Consensus 24 ~~~v~-ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~ 80 (196)
T PRK00454 24 GPEIA-FAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGY 80 (196)
T ss_pred CCEEE-EEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCC
Confidence 34444 36999999999999999887666667776643221 1112478999999995
No 169
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.99 E-value=1.2e-09 Score=73.94 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=47.2
Q ss_pred eccCCCcceeeeeccccCcCC--CCCCCccceEEEE-EecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.+|||||||++++.+..+. .....|....... ....+..+.+|||+|...... ++
T Consensus 6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~ 85 (270)
T TIGR00436 6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILF 85 (270)
T ss_pred ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEE
Confidence 599999999999999987643 2333344433332 334556799999999753210 88
Q ss_pred EEECCChhhHH
Q psy2967 78 MVDAADTDKLE 88 (101)
Q Consensus 78 v~d~~~~~sf~ 88 (101)
|+|.++..+.+
T Consensus 86 VvD~~~~~~~~ 96 (270)
T TIGR00436 86 VVDSDQWNGDG 96 (270)
T ss_pred EEECCCCCchH
Confidence 99999887764
No 170
>KOG3883|consensus
Probab=98.98 E-value=1.3e-09 Score=68.30 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=56.6
Q ss_pred eEeccCCCcceeeeeccccCcCC--CCCCCccceEEE-EE---ecCcEEEEEEeeCCCCccce-------------EEEE
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMR-KI---TKGNVTIKVWDIGGQPRFRS-------------IYMV 79 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~-~~---~~~~~~~~i~D~~G~~~~~~-------------i~v~ 79 (101)
+++|..+||||+++.++..+... .++.||+...|. .+ .+..-.+.++||+|-..... ++||
T Consensus 13 vVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVY 92 (198)
T KOG3883|consen 13 VVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVY 92 (198)
T ss_pred EEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEe
Confidence 44588899999999998876644 367899885553 23 23446889999998765522 9999
Q ss_pred ECCChhhHHHHHHH
Q psy2967 80 DAADTDKLEASRNE 93 (101)
Q Consensus 80 d~~~~~sf~~~~~~ 93 (101)
|..|++||+.+...
T Consensus 93 s~~d~eSf~rv~ll 106 (198)
T KOG3883|consen 93 SPMDPESFQRVELL 106 (198)
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999988433
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.97 E-value=1.9e-09 Score=77.12 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=52.3
Q ss_pred ceeeeEeccCCCcceeeeeccccCcC--CCCCCC-ccceEEEEEecCcEEEEEEeeCCCCc--------cce--------
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQF--SQDMIP-TVGFNMRKITKGNVTIKVWDIGGQPR--------FRS-------- 75 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~--~~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~-------- 75 (101)
|.+.+ +|.+|||||||++++..... ...+.. |....+..+...+..+.+|||+|++. ++.
T Consensus 2 ~~I~i-vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAI-VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEE-ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 34443 59999999999999997653 223222 22333344566678999999999986 111
Q ss_pred ----EEEEECCChhhH--HHHHHHHH
Q psy2967 76 ----IYMVDAADTDKL--EASRNELH 95 (101)
Q Consensus 76 ----i~v~d~~~~~sf--~~~~~~~~ 95 (101)
|+|+|.++..+. .++..|+.
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~ 106 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR 106 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 889999875443 23344544
No 172
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.94 E-value=2.3e-09 Score=77.72 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=51.8
Q ss_pred EeccCCCcceeeeeccccCcCC-CCCCCccceE--EEEEecCcEEEEEEeeCCC----------Cccc---------e--
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQ----------PRFR---------S-- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~----------~~~~---------~-- 75 (101)
.+|.+|||||||++++++.++. ....|+...+ ...+..++..+.+|||+|. +.+. .
T Consensus 216 iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad 295 (472)
T PRK03003 216 LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAE 295 (472)
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCC
Confidence 3699999999999999987642 1222222222 2234556667889999995 2221 1
Q ss_pred --EEEEECCChhhHHHHHHHHHHH
Q psy2967 76 --IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 76 --i~v~d~~~~~sf~~~~~~~~~i 97 (101)
++|+|.++..+++.+. ++..+
T Consensus 296 ~vilV~Da~~~~s~~~~~-~~~~~ 318 (472)
T PRK03003 296 VAVVLIDASEPISEQDQR-VLSMV 318 (472)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHH
Confidence 8999999998888774 44443
No 173
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.93 E-value=1.3e-09 Score=81.04 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=53.0
Q ss_pred eccCCCcceeeeeccccC-------cCCCCCCCc------cceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSG-------QFSQDMIPT------VGFNMR----KI-----TKGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~-------~~~~~~~~t------~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|..++|||||+.+++.. ++...+..+ .|..+. .+ ++..+.+.+|||+|+..|..
T Consensus 9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~ 88 (595)
T TIGR01393 9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVS 88 (595)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHH
Confidence 599999999999999864 233333333 244332 12 24458999999999998865
Q ss_pred ---------EEEEECCChhhHHHHHHHHH
Q psy2967 76 ---------IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 76 ---------i~v~d~~~~~sf~~~~~~~~ 95 (101)
|+|+|.++..+++....|..
T Consensus 89 ~~l~~aD~aILVvDat~g~~~qt~~~~~~ 117 (595)
T TIGR01393 89 RSLAACEGALLLVDAAQGIEAQTLANVYL 117 (595)
T ss_pred HHHHhCCEEEEEecCCCCCCHhHHHHHHH
Confidence 99999999777766655543
No 174
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.93 E-value=2.9e-09 Score=70.88 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=45.3
Q ss_pred eccCCCcceeeeeccccCcC-CCCCC-CccceEEEEEecCcEEEEEEeeCCCCccc---------------e----EEEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQF-SQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFR---------------S----IYMV 79 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------------~----i~v~ 79 (101)
+|.+|||||||++++.+... ...+. +|.......+...+..+++||++|..+.. . ++|+
T Consensus 6 vG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~ 85 (233)
T cd01896 6 VGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVL 85 (233)
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEe
Confidence 68899999999999997642 12222 33333333455678899999999974322 1 7899
Q ss_pred ECCChh
Q psy2967 80 DAADTD 85 (101)
Q Consensus 80 d~~~~~ 85 (101)
|.++++
T Consensus 86 D~t~~~ 91 (233)
T cd01896 86 DATKPE 91 (233)
T ss_pred cCCcch
Confidence 998765
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.91 E-value=9.1e-10 Score=70.85 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=45.2
Q ss_pred eccCCCcceeeeeccccC----cCCCCC-----CCccceEEEEEe--------------cCcEEEEEEeeCCCCccce--
Q psy2967 21 MRKITKGNVTIWPVPLSG----QFSQDM-----IPTVGFNMRKIT--------------KGNVTIKVWDIGGQPRFRS-- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~----~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~i~D~~G~~~~~~-- 75 (101)
+|.+++|||||++++... .+...+ ..|++..+..+. .++..+.+||++|+..+..
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 85 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTI 85 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHH
Confidence 599999999999999862 122111 244454433222 2378999999999876422
Q ss_pred ----------EEEEECCChhhHH
Q psy2967 76 ----------IYMVDAADTDKLE 88 (101)
Q Consensus 76 ----------i~v~d~~~~~sf~ 88 (101)
++|+|.++..+.+
T Consensus 86 ~~~~~~~d~vi~VvD~~~~~~~~ 108 (192)
T cd01889 86 IGGAQIIDLMLLVVDATKGIQTQ 108 (192)
T ss_pred HHHHhhCCEEEEEEECCCCccHH
Confidence 8899998754433
No 176
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.89 E-value=2.8e-09 Score=67.87 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=37.5
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCC
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~ 70 (101)
..+.+. .+|++|+|||||++++....+...+.++.+.... .....+ .+.+||++|.
T Consensus 17 ~~~~i~-ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~ 74 (179)
T TIGR03598 17 DGPEIA-FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND-GFRLVDLPGY 74 (179)
T ss_pred CCCEEE-EEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC-cEEEEeCCCC
Confidence 344443 4699999999999999987655555555553321 122122 6899999995
No 177
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.89 E-value=2.5e-09 Score=67.68 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=48.7
Q ss_pred eccCCCcceeeeeccccCcCCCCCCC------------------ccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIP------------------TVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~------------------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|.+|+|||||++.+..........+ |.......+...+..+.+||++|+..+..
T Consensus 5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 84 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLS 84 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHH
Confidence 58999999999999998766543322 22233334556678999999999876644
Q ss_pred -----EEEEECCChhhH
Q psy2967 76 -----IYMVDAADTDKL 87 (101)
Q Consensus 76 -----i~v~d~~~~~sf 87 (101)
++|+|.++..+.
T Consensus 85 ~~d~~i~v~d~~~~~~~ 101 (189)
T cd00881 85 VSDGAILVVDANEGVQP 101 (189)
T ss_pred hcCEEEEEEECCCCCcH
Confidence 889998876544
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.89 E-value=3.2e-09 Score=78.90 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=38.1
Q ss_pred ccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCcc
Q psy2967 22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRF 73 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~ 73 (101)
|++|||||||++++.+..+.....|+...+. ..+..++..+++||++|+.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 7899999999999998765433344444433 235566778999999998764
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.89 E-value=3.9e-09 Score=80.38 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=55.3
Q ss_pred ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCcc--ceEEEEEecCcEEEEEEeeCCCCccce------------E
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRS------------I 76 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i 76 (101)
....|++.+ +|..++|||||++++..+.+.....+.+ ......+...+..+.+|||+|++.|.. |
T Consensus 287 ~~R~pvV~I-mGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 287 VPRPPVVTI-MGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred ccCCCEEEE-ECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 345666664 6999999999999998876654332222 122233455568899999999998876 8
Q ss_pred EEEECCC---hhhHHHH
Q psy2967 77 YMVDAAD---TDKLEAS 90 (101)
Q Consensus 77 ~v~d~~~---~~sf~~~ 90 (101)
+|||.++ +++.+.+
T Consensus 366 LVVdAddGv~~qT~e~i 382 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI 382 (787)
T ss_pred EEEECCCCCCHhHHHHH
Confidence 8999987 4554443
No 180
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.89 E-value=8.9e-10 Score=70.87 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=51.8
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE-E-ecCcEEEEEEeeCCCCccce---------------EEEEECCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-I-TKGNVTIKVWDIGGQPRFRS---------------IYMVDAAD 83 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~-~~~~~~~~i~D~~G~~~~~~---------------i~v~d~~~ 83 (101)
+|++|+|||+|..++..++..+.+ .++..+... + ...+-.+.+.|++|+++.+. |||.|.+.
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKTVPTV-TSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS---B----SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred EcCCCCCHHHHHHHHhcCCcCCee-ccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 477799999999999999776433 333444322 2 23556899999999998876 99999874
Q ss_pred -hhhHHHHHHHHHHHHH
Q psy2967 84 -TDKLEASRNELHALIE 99 (101)
Q Consensus 84 -~~sf~~~~~~~~~i~~ 99 (101)
...+.++.+.+-+++.
T Consensus 88 ~~~~~~~~Ae~Ly~iL~ 104 (181)
T PF09439_consen 88 DQKELRDVAEYLYDILS 104 (181)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 4556677677766654
No 181
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.83 E-value=9.8e-09 Score=74.86 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=51.3
Q ss_pred eccCCCcceeeeeccccCcCC-CC-CCCccceEEEEEecCcEEEEEEeeCCCCc------------cce-------EEEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-QD-MIPTVGFNMRKITKGNVTIKVWDIGGQPR------------FRS-------IYMV 79 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~-------i~v~ 79 (101)
||.||||||||++++...... .+ ..+|+..+...++..+..+.+||++|.-. ++. |+|+
T Consensus 165 VG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VV 244 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVV 244 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEE
Confidence 588999999999999865432 22 23555666666777778999999999521 111 7889
Q ss_pred ECCC----hhhHHHHHHHHHHH
Q psy2967 80 DAAD----TDKLEASRNELHAL 97 (101)
Q Consensus 80 d~~~----~~sf~~~~~~~~~i 97 (101)
|+++ ++.++....|..++
T Consensus 245 D~s~~e~~rdp~~d~~~i~~EL 266 (500)
T PRK12296 245 DCATLEPGRDPLSDIDALEAEL 266 (500)
T ss_pred CCcccccccCchhhHHHHHHHH
Confidence 9985 33444444444443
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.82 E-value=3.6e-09 Score=78.48 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=51.7
Q ss_pred eccCCCcceeeeecccc---CcCCCCCCCcc--ceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 21 MRKITKGNVTIWPVPLS---GQFSQDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~---~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+|.+++|||||++++.+ +.+.+++.+++ ...+..+..++..+.+||++|+++|.. ++|+|.++
T Consensus 6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence 58999999999999985 33443444433 344444666668999999999988765 89999987
Q ss_pred ---hhhHHHH
Q psy2967 84 ---TDKLEAS 90 (101)
Q Consensus 84 ---~~sf~~~ 90 (101)
+++++.+
T Consensus 86 G~~~qT~ehl 95 (581)
T TIGR00475 86 GVMTQTGEHL 95 (581)
T ss_pred CCcHHHHHHH
Confidence 5666655
No 183
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.82 E-value=7.9e-09 Score=76.72 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=52.0
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccc--eEEEEEecCc-EEEEEEeeCCCCccce------------EE
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVG--FNMRKITKGN-VTIKVWDIGGQPRFRS------------IY 77 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~i~D~~G~~~~~~------------i~ 77 (101)
.-|.+. .+|..++|||||++++....+.....+.+. .....+...+ ..+.+|||+|+++|.. ++
T Consensus 86 r~p~V~-I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVT-IMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEE-EECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 445554 369999999999999998877654433222 2222333322 3899999999998765 88
Q ss_pred EEECCC---hhhHHHH
Q psy2967 78 MVDAAD---TDKLEAS 90 (101)
Q Consensus 78 v~d~~~---~~sf~~~ 90 (101)
|+|.++ +++.+.+
T Consensus 165 VVda~dgv~~qT~e~i 180 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI 180 (587)
T ss_pred EEECCCCCCHhHHHHH
Confidence 999876 4454443
No 184
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.81 E-value=1.7e-08 Score=62.79 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=46.4
Q ss_pred EeccCCCcceeeeeccccCcCC--CCCCCcc-ceEEEEEecCcEEEEEEeeCCCCcc----------c---------e--
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRF----------R---------S-- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~~~----------~---------~-- 75 (101)
.+|++|+|||||++++...... .....+. ......+...+..+.+||++|.... . .
T Consensus 7 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d 86 (174)
T cd01895 7 IIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD 86 (174)
T ss_pred EEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC
Confidence 4699999999999999876532 1222221 2222234445667889999996322 1 1
Q ss_pred --EEEEECCChhhHHHH
Q psy2967 76 --IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 --i~v~d~~~~~sf~~~ 90 (101)
++|+|.+++.+....
T Consensus 87 ~vi~v~d~~~~~~~~~~ 103 (174)
T cd01895 87 VVLLVIDATEGITEQDL 103 (174)
T ss_pred eEEEEEeCCCCcchhHH
Confidence 889999988776554
No 185
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.80 E-value=1.2e-08 Score=62.87 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=42.4
Q ss_pred eccCCCcceeeeeccccCcCCCC--CCCccceEE-EEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQD--MIPTVGFNM-RKITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~--~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.+|+|||||++++.+.+.... ...+..... .........+.+||++|...... ++
T Consensus 9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 88 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLF 88 (168)
T ss_pred ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEE
Confidence 58999999999999987654311 112221111 22445568899999999753211 88
Q ss_pred EEECCCh
Q psy2967 78 MVDAADT 84 (101)
Q Consensus 78 v~d~~~~ 84 (101)
|+|.+++
T Consensus 89 v~d~~~~ 95 (168)
T cd04163 89 VVDASEP 95 (168)
T ss_pred EEECCCc
Confidence 9999887
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.79 E-value=1.7e-08 Score=76.43 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=46.0
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccc--------e------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFR--------S------ 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~--------~------ 75 (101)
+|.+. .+|.+|||||||++++++.... ...++.|.... .....+..+.+|||+|.+... .
T Consensus 275 ~~~V~-IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVA-IVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEE-EECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 34444 3699999999999999976532 22333333322 234567889999999976311 1
Q ss_pred ------EEEEECCCh
Q psy2967 76 ------IYMVDAADT 84 (101)
Q Consensus 76 ------i~v~d~~~~ 84 (101)
|+|+|.++.
T Consensus 353 ~~aD~iL~VvDa~~~ 367 (712)
T PRK09518 353 SLADAVVFVVDGQVG 367 (712)
T ss_pred HhCCEEEEEEECCCC
Confidence 899999764
No 187
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.79 E-value=1e-08 Score=76.12 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=52.5
Q ss_pred cccceeeeEeccCCCcceeeeeccccCcCCCC----CCCccceEEEEEe------cCc-----E-----EEEEEeeCCCC
Q psy2967 12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQD----MIPTVGFNMRKIT------KGN-----V-----TIKVWDIGGQP 71 (101)
Q Consensus 12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~------~~~-----~-----~~~i~D~~G~~ 71 (101)
.+-|++.+ +|.+++|||||++++.+...... +.+++|..+...+ +.. . .+.+|||+|++
T Consensus 4 ~R~p~V~i-~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 4 LRQPIVVV-LGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCcEEEE-ECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 34555553 69999999999999986543322 2235565443211 111 1 26899999999
Q ss_pred ccce------------EEEEECCC---hhhHHHHH
Q psy2967 72 RFRS------------IYMVDAAD---TDKLEASR 91 (101)
Q Consensus 72 ~~~~------------i~v~d~~~---~~sf~~~~ 91 (101)
.|.. ++|+|.++ +++++.+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~ 117 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN 117 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence 8875 89999997 77777664
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.78 E-value=2.3e-08 Score=71.39 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=48.9
Q ss_pred EeccCCCcceeeeeccccCcCC--CCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce---------------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS--QDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS--------------------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------- 75 (101)
.+|.+++|||||++++.+.+.. ..+..|.. .....+..++..+.+|||+|..+...
T Consensus 177 ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 256 (429)
T TIGR03594 177 IIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERAD 256 (429)
T ss_pred EECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCC
Confidence 4699999999999999976532 22333322 22223445566899999999743211
Q ss_pred --EEEEECCChhhHHHHH
Q psy2967 76 --IYMVDAADTDKLEASR 91 (101)
Q Consensus 76 --i~v~d~~~~~sf~~~~ 91 (101)
|+|+|.++..+.++..
T Consensus 257 ~~ilV~D~~~~~~~~~~~ 274 (429)
T TIGR03594 257 VVLLVLDATEGITEQDLR 274 (429)
T ss_pred EEEEEEECCCCccHHHHH
Confidence 8999999887776653
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.77 E-value=2.2e-08 Score=60.87 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred eccCCCcceeeeeccccCcCCC--CCCC-ccceEEEEEecC-cEEEEEEeeCCCCccce-------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ--DMIP-TVGFNMRKITKG-NVTIKVWDIGGQPRFRS-------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~--~~~~-t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-------------------i~ 77 (101)
+|.+|+|||||++++....... ...+ |........... ...+.+||++|...... ++
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~ 81 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILF 81 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEE
Confidence 5889999999999998765441 1222 222222223333 67899999999764321 88
Q ss_pred EEECCChhhHHHHH
Q psy2967 78 MVDAADTDKLEASR 91 (101)
Q Consensus 78 v~d~~~~~sf~~~~ 91 (101)
|+|.++..+.....
T Consensus 82 v~~~~~~~~~~~~~ 95 (163)
T cd00880 82 VVDADLRADEEEEK 95 (163)
T ss_pred EEeCCCCCCHHHHH
Confidence 89999887766654
No 190
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.76 E-value=3.4e-08 Score=58.66 Aligned_cols=52 Identities=13% Similarity=-0.004 Sum_probs=36.4
Q ss_pred EeccCCCcceeeeeccccCcC---CCCCCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF---SQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (101)
.+|.+|+|||||++.+.+... ......|....+..+...+..+.++|++|-.
T Consensus 4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~ 58 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIN 58 (116)
T ss_dssp EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCS
T ss_pred EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCc
Confidence 368899999999999997432 1122333445444556677888899999964
No 191
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.76 E-value=7.5e-09 Score=61.51 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=46.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCC-CccceEEEEEecCcEEEEEEeeCCCCccce-EEEEECCChhhHHHHHHHHHHH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRS-IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-i~v~d~~~~~sf~~~~~~~~~i 97 (101)
.+|+.|||||+|+.|+..+.+...+. +|++ +..+|..-.+.+.. ++||+.+++++++++ |...+
T Consensus 5 ~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i 70 (124)
T smart00010 5 GIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEV 70 (124)
T ss_pred EECCCChhHHHHHHHHhcCCccccCceehhh------------hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHH
Confidence 46999999999999999888876666 6666 33344433333344 557999999999876 76655
Q ss_pred H
Q psy2967 98 I 98 (101)
Q Consensus 98 ~ 98 (101)
+
T Consensus 71 ~ 71 (124)
T smart00010 71 L 71 (124)
T ss_pred H
Confidence 4
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.75 E-value=2.5e-08 Score=71.18 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=45.6
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCc-cceEEEEEecCcEEEEEEeeCCCCcc--------ce------------E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRF--------RS------------I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~------------i 76 (101)
.+|.+|||||||++++.+... ...+..+ .......+...+..+.+|||+|.... .. +
T Consensus 4 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl 83 (429)
T TIGR03594 4 IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVIL 83 (429)
T ss_pred EECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEE
Confidence 369999999999999998653 2222222 22333445667788999999996321 11 8
Q ss_pred EEEECCChhh
Q psy2967 77 YMVDAADTDK 86 (101)
Q Consensus 77 ~v~d~~~~~s 86 (101)
+|+|..+..+
T Consensus 84 ~vvD~~~~~~ 93 (429)
T TIGR03594 84 FVVDGREGLT 93 (429)
T ss_pred EEEeCCCCCC
Confidence 8999987544
No 193
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.74 E-value=1.7e-08 Score=76.52 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=53.1
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCCCCCC----ccceEEEEEe--cCcEEEEEEeeCCCCccce-----------
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIP----TVGFNMRKIT--KGNVTIKVWDIGGQPRFRS----------- 75 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~----t~~~~~~~~~--~~~~~~~i~D~~G~~~~~~----------- 75 (101)
..|.+.+ +|..++|||||++++....+.....+ .++.....+. ..+..+.+|||+|++.|..
T Consensus 243 r~p~V~I-vGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 243 RPPIVTI-LGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred cCCEEEE-ECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4556554 69999999999999998776543322 2232222222 3468999999999998765
Q ss_pred -EEEEECCC---hhhHHHH
Q psy2967 76 -IYMVDAAD---TDKLEAS 90 (101)
Q Consensus 76 -i~v~d~~~---~~sf~~~ 90 (101)
|+|+|.++ +++++.+
T Consensus 322 aILVVDA~dGv~~QT~E~I 340 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI 340 (742)
T ss_pred EEEEEECcCCCChhhHHHH
Confidence 88999887 4555444
No 194
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.74 E-value=1e-08 Score=63.37 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=36.5
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCcEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~ 71 (101)
+|++|+|||||++.+.++.+.....++.+..... +.... .+.+||++|..
T Consensus 5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~ 56 (170)
T cd01876 5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYG 56 (170)
T ss_pred EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCcc
Confidence 6889999999999999776666666666644322 22222 89999999843
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.73 E-value=1.8e-08 Score=76.35 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=49.7
Q ss_pred eccCCCcceeeeeccccCcC--CCCCCCccceEE-EEEecCcEEEEEEeeCCCCc----------c---------ce---
Q psy2967 21 MRKITKGNVTIWPVPLSGQF--SQDMIPTVGFNM-RKITKGNVTIKVWDIGGQPR----------F---------RS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~----------~---------~~--- 75 (101)
+|.+|||||||++++.+.+. ..++.+|....+ ..+..++..+.+|||+|..+ + +.
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv 535 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL 535 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence 69999999999999998764 334444433222 23445566678999999531 1 11
Q ss_pred -EEEEECCChhhHHHHH
Q psy2967 76 -IYMVDAADTDKLEASR 91 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~ 91 (101)
++|+|.++..+++...
T Consensus 536 vilViDat~~~s~~~~~ 552 (712)
T PRK09518 536 ALFLFDASQPISEQDLK 552 (712)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 8899999998887764
No 196
>PRK00089 era GTPase Era; Reviewed
Probab=98.73 E-value=2.5e-08 Score=68.06 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=43.2
Q ss_pred eccCCCcceeeeeccccCcCCC--CCCCccceEEEE-EecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.+|||||||++++++.+... ....|....... ....+..+.+|||+|...... ++
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~ 90 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLF 90 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEE
Confidence 5999999999999999776431 222333333332 334558899999999743211 88
Q ss_pred EEECCC
Q psy2967 78 MVDAAD 83 (101)
Q Consensus 78 v~d~~~ 83 (101)
|+|.++
T Consensus 91 vvd~~~ 96 (292)
T PRK00089 91 VVDADE 96 (292)
T ss_pred EEeCCC
Confidence 999988
No 197
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.70 E-value=2.8e-08 Score=65.04 Aligned_cols=69 Identities=10% Similarity=0.239 Sum_probs=46.2
Q ss_pred eccCCCcceeeeeccccCcCCCC-----------C------CCccceEEE----EE-----ecCcEEEEEEeeCCCCccc
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQD-----------M------IPTVGFNMR----KI-----TKGNVTIKVWDIGGQPRFR 74 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~-----------~------~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~ 74 (101)
+|..++|||||+.+++....... + +...+..+. .+ +++.+.+.+||++|+..|.
T Consensus 6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~ 85 (213)
T cd04167 6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM 85 (213)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence 58899999999999886433211 0 011122221 11 2456899999999998875
Q ss_pred e------------EEEEECCChhhHHH
Q psy2967 75 S------------IYMVDAADTDKLEA 89 (101)
Q Consensus 75 ~------------i~v~d~~~~~sf~~ 89 (101)
. ++|+|.++..++..
T Consensus 86 ~~~~~~~~~aD~~llVvD~~~~~~~~~ 112 (213)
T cd04167 86 DEVAAALRLSDGVVLVVDVVEGVTSNT 112 (213)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH
Confidence 4 89999988776643
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=4.1e-08 Score=62.85 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=59.7
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCC--------CCC----CCccceEEEEEecCc-EEEEEEeeCCCCccce-----
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFS--------QDM----IPTVGFNMRKITKGN-VTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~--------~~~----~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~----- 75 (101)
+.+.-...|+.++|||++++++.+.... ..+ ..|+..++..+.... ..+++++++||+||+-
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence 3444445688899999999999876531 111 245667776655444 8999999999999887
Q ss_pred -------EEEEECCChhhHHHHHHHHHH
Q psy2967 76 -------IYMVDAADTDKLEASRNELHA 96 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~~~~~~~ 96 (101)
|+++|.+....| ++...++.
T Consensus 89 ~~ga~gaivlVDss~~~~~-~a~~ii~f 115 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITF-HAEEIIDF 115 (187)
T ss_pred hCCcceEEEEEecCCCcch-HHHHHHHH
Confidence 889999999998 55444443
No 199
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.69 E-value=4e-08 Score=68.26 Aligned_cols=50 Identities=20% Similarity=0.348 Sum_probs=36.6
Q ss_pred eccCCCcceeeeeccccCcCC------CCCCCccceEEEE-------------------Eec-CcEEEEEEeeCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS------QDMIPTVGFNMRK-------------------ITK-GNVTIKVWDIGGQ 70 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~------~~~~~t~~~~~~~-------------------~~~-~~~~~~i~D~~G~ 70 (101)
+|.++||||||++++++.++. ..+.|++|..+.. .++ ..+.+++||++|.
T Consensus 4 vG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 4 VGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 699999999999999987642 3446777654421 112 3478999999998
No 200
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.66 E-value=2.7e-08 Score=66.46 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=46.4
Q ss_pred eccCCCcceeeeeccccCcC--------CC-----CC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSGQF--------SQ-----DM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~--------~~-----~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|..++|||||+.++....- .. ++ .-|+......+..++.++.+||++|+..|..
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 84 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERS 84 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHH
Confidence 58899999999999875210 00 01 1122233344677889999999999987754
Q ss_pred -------EEEEECCChhhH
Q psy2967 76 -------IYMVDAADTDKL 87 (101)
Q Consensus 76 -------i~v~d~~~~~sf 87 (101)
++|+|.++....
T Consensus 85 l~~aD~~IlVvd~~~g~~~ 103 (237)
T cd04168 85 LSVLDGAILVISAVEGVQA 103 (237)
T ss_pred HHHhCeEEEEEeCCCCCCH
Confidence 899999886543
No 201
>PRK13351 elongation factor G; Reviewed
Probab=98.66 E-value=3.6e-08 Score=74.39 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=54.0
Q ss_pred eccCCCcceeeeeccccCc-------------CCC-------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSGQ-------------FSQ-------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~-------------~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|..++|||||+.++.... +.. .+..|+......+..++..+.+|||+|+..|..
T Consensus 14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~ 93 (687)
T PRK13351 14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERS 93 (687)
T ss_pred ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999987421 010 234556555556777899999999999987654
Q ss_pred -------EEEEECCChhhHHHHHHH
Q psy2967 76 -------IYMVDAADTDKLEASRNE 93 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~~~~ 93 (101)
++|+|.++..+.+....|
T Consensus 94 l~~aD~~ilVvd~~~~~~~~~~~~~ 118 (687)
T PRK13351 94 LRVLDGAVVVFDAVTGVQPQTETVW 118 (687)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 899999988776655444
No 202
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.65 E-value=7e-08 Score=68.69 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=53.0
Q ss_pred eccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecC-cEEEEEEeeCCCCccc---------------e----EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRFR---------------S----IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~---------------~----i~v 78 (101)
||.||||||||+++++..... ..+ ..|.....-.+... ...+.++|++|.-+-. . ++|
T Consensus 165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~V 244 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHL 244 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEE
Confidence 599999999999999865432 122 23444444444444 3569999999974311 0 889
Q ss_pred EECC---ChhhHHHHHHHHHHHHH
Q psy2967 79 VDAA---DTDKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~---~~~sf~~~~~~~~~i~~ 99 (101)
+|++ +++.+++...|++++..
T Consensus 245 VD~s~~~~~d~~e~~~~l~~eL~~ 268 (390)
T PRK12298 245 IDIAPIDGSDPVENARIIINELEK 268 (390)
T ss_pred eccCcccccChHHHHHHHHHHHHh
Confidence 9988 56677777777777654
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.61 E-value=7.7e-08 Score=68.94 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=46.4
Q ss_pred eeeE-eccCCCcceeeeeccccC--cCCC-------------------------------CCCCccceEEEEEecCcEEE
Q psy2967 17 VGFN-MRKITKGNVTIWPVPLSG--QFSQ-------------------------------DMIPTVGFNMRKITKGNVTI 62 (101)
Q Consensus 17 ~g~~-vG~~~vGKtsl~~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 62 (101)
+.+. +|.+++|||||+.+++.. .... ..--|+......++.++..+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 3344 599999999999998732 1100 11223333344567788999
Q ss_pred EEEeeCCCCccce------------EEEEECCC
Q psy2967 63 KVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 63 ~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+||++|+++|.. ++|+|.++
T Consensus 87 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 87 TIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 9999999987744 89999987
No 204
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.61 E-value=4.3e-08 Score=61.76 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=43.1
Q ss_pred eccCCCcceeeeeccccCcCCC-CC-CCccceEEEEEecCcEEEEEEeeCCCCccce--------------------EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~v 78 (101)
+|.||||||||++++.+....- ++ -.|+......+...+..+.+.|++|--.... +.|
T Consensus 6 vG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~V 85 (156)
T PF02421_consen 6 VGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVV 85 (156)
T ss_dssp EESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEE
T ss_pred ECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEE
Confidence 5999999999999999866332 22 2333344345677789999999999543332 778
Q ss_pred EECCChhh
Q psy2967 79 VDAADTDK 86 (101)
Q Consensus 79 ~d~~~~~s 86 (101)
.|.++.++
T Consensus 86 vDa~~l~r 93 (156)
T PF02421_consen 86 VDATNLER 93 (156)
T ss_dssp EEGGGHHH
T ss_pred CCCCCHHH
Confidence 89887654
No 205
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.61 E-value=1.1e-07 Score=64.80 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=48.4
Q ss_pred eEeccCCCcceeeeeccccCcCCCC----------CCCccceEEEE--Ee--cCcEEEEEEeeCCCCccceEEEEECCCh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQD----------MIPTVGFNMRK--IT--KGNVTIKVWDIGGQPRFRSIYMVDAADT 84 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~----------~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~i~v~d~~~~ 84 (101)
+.+|.+|+|||||++++.+..+... ..+|+...... +. +..+.+.+|||+|-... ..+.
T Consensus 8 ~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~-------~~~~ 80 (276)
T cd01850 8 MVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN-------INNS 80 (276)
T ss_pred EEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc-------ccch
Confidence 3469999999999999998776543 34555544332 33 33478999999996532 2355
Q ss_pred hhHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHAL 97 (101)
Q Consensus 85 ~sf~~~~~~~~~i 97 (101)
..++.+..++++-
T Consensus 81 ~~~~~i~~yi~~q 93 (276)
T cd01850 81 DCWKPIVDYIDDQ 93 (276)
T ss_pred hhHHHHHHHHHHH
Confidence 6677776665543
No 206
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.60 E-value=6e-08 Score=69.60 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=54.1
Q ss_pred cceeeeE---eccCCCcceeeeeccccCc--CCCCCCCccceEEE-EEecCcEEEEEEeeCCCCccce------------
Q psy2967 14 IPTVGFN---MRKITKGNVTIWPVPLSGQ--FSQDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRS------------ 75 (101)
Q Consensus 14 ~~~~g~~---vG~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~~------------ 75 (101)
+.--|+. +|.||||||||+|.+.+.+ .+++..-|.+.-.+ .++.+++.+.+.||+|-.....
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 3344444 3999999999999999754 45566666665554 4788999999999999875444
Q ss_pred --------EEEEECCCh
Q psy2967 76 --------IYMVDAADT 84 (101)
Q Consensus 76 --------i~v~d~~~~ 84 (101)
++|+|.+.+
T Consensus 293 ~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 293 AIEEADLVLFVLDASQP 309 (454)
T ss_pred HHHhCCEEEEEEeCCCC
Confidence 889999885
No 207
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.59 E-value=1.3e-07 Score=72.23 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=46.0
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccc--------------------e-
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFR--------------------S- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~--------------------~- 75 (101)
+|.+|||||||++++.+.... ..+..|...+ .+..++..+.+||++|...+. .
T Consensus 9 vG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~a 86 (772)
T PRK09554 9 IGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA 86 (772)
T ss_pred ECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCC
Confidence 599999999999999875432 2233343332 356778899999999986542 1
Q ss_pred ---EEEEECCChhh
Q psy2967 76 ---IYMVDAADTDK 86 (101)
Q Consensus 76 ---i~v~d~~~~~s 86 (101)
++|+|.++.++
T Consensus 87 D~vI~VvDat~ler 100 (772)
T PRK09554 87 DLLINVVDASNLER 100 (772)
T ss_pred CEEEEEecCCcchh
Confidence 78899988655
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=98.57 E-value=1.5e-07 Score=70.25 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=49.0
Q ss_pred eccCCCcceeeeecccc--CcCCCCC------------CCccceEEE----EEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQDM------------IPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~~~------------~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|..++|||||+.++.. +.+...+ +.+.|..+. .+.++++.+.+||++|+..|..
T Consensus 11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~ 90 (607)
T PRK10218 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMS 90 (607)
T ss_pred ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHH
Confidence 59999999999999986 5444322 234454442 3667889999999999998865
Q ss_pred -----EEEEECCChh
Q psy2967 76 -----IYMVDAADTD 85 (101)
Q Consensus 76 -----i~v~d~~~~~ 85 (101)
|+|+|.++..
T Consensus 91 ~aDg~ILVVDa~~G~ 105 (607)
T PRK10218 91 MVDSVLLVVDAFDGP 105 (607)
T ss_pred hCCEEEEEEecccCc
Confidence 8999998753
No 209
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.56 E-value=2.6e-07 Score=66.18 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=47.6
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCccceEE-EEEecCcEEEEEEeeCCCCccc----------------e-----
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVGFNM-RKITKGNVTIKVWDIGGQPRFR----------------S----- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~~~----------------~----- 75 (101)
.+|.+|+|||||++++.+.+. ......|..... ..+..++..+.+|||+|..+.. .
T Consensus 178 ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 257 (435)
T PRK00093 178 IIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERAD 257 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCC
Confidence 469999999999999997542 222222322222 2345567788999999963211 0
Q ss_pred --EEEEECCChhhHHHH
Q psy2967 76 --IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 --i~v~d~~~~~sf~~~ 90 (101)
|+|+|.++..+.+..
T Consensus 258 ~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 258 VVLLVIDATEGITEQDL 274 (435)
T ss_pred EEEEEEeCCCCCCHHHH
Confidence 899999988776655
No 210
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.56 E-value=5.7e-08 Score=65.96 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.9
Q ss_pred eccCCCcceeeeeccccC--cCCC---------------CC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFSQ---------------DM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~~---------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~- 75 (101)
+|.+++|||||+.++... .... ++ ..++......+..++.++.+|||+|+.+|..
T Consensus 8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~ 87 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSED 87 (267)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHH
Confidence 588999999999998742 1110 00 1122223335778899999999999987654
Q ss_pred -----------EEEEECCChh
Q psy2967 76 -----------IYMVDAADTD 85 (101)
Q Consensus 76 -----------i~v~d~~~~~ 85 (101)
|+|+|.++..
T Consensus 88 ~~~~l~~aD~~IlVvda~~g~ 108 (267)
T cd04169 88 TYRTLTAVDSAVMVIDAAKGV 108 (267)
T ss_pred HHHHHHHCCEEEEEEECCCCc
Confidence 8999998753
No 211
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.55 E-value=1.7e-08 Score=63.40 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=38.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCC-----ccc-------e----EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP-----RFR-------S----IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~-------~----i~v~d~~~ 83 (101)
.+|.++||||||++++.+.. . ...+|.+..+ ... .+||++|+. .++ . ++|+|.++
T Consensus 6 ~iG~~~~GKstl~~~l~~~~-~-~~~~~~~v~~---~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~ 76 (158)
T PRK15467 6 FVGAVGAGKTTLFNALQGNY-T-LARKTQAVEF---NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGAND 76 (158)
T ss_pred EECCCCCCHHHHHHHHcCCC-c-cCccceEEEE---CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 36889999999999977543 2 1233433333 112 269999972 211 1 88999998
Q ss_pred hhhHH
Q psy2967 84 TDKLE 88 (101)
Q Consensus 84 ~~sf~ 88 (101)
.+++.
T Consensus 77 ~~s~~ 81 (158)
T PRK15467 77 PESRL 81 (158)
T ss_pred ccccc
Confidence 87763
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.53 E-value=6.4e-08 Score=69.39 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=47.1
Q ss_pred eccCCCcceeeeecccc--CcCCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|..++|||||+.+++. +.... ....|+......+..++..+.+||+
T Consensus 13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDt 92 (426)
T TIGR00483 13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDC 92 (426)
T ss_pred EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEEC
Confidence 49999999999999875 22211 0112223333446677899999999
Q ss_pred CCCCccce------------EEEEECCChhhH
Q psy2967 68 GGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~~sf 87 (101)
+|+++|.. ++|+|.++.+++
T Consensus 93 pGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 93 PGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred CCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 99987754 999999987543
No 213
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.51 E-value=1.2e-07 Score=64.11 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=46.9
Q ss_pred eccCCCcceeeeeccccCcCCCC--------------------CCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQD--------------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|.+|+|||||++++........ ...|+......+..++..+.+||++|+..+..
T Consensus 5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~ 84 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAA 84 (268)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHH
Confidence 58999999999999864221100 12223333344667789999999999976543
Q ss_pred -------EEEEECCChhhHHHH
Q psy2967 76 -------IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~ 90 (101)
++|+|.++.......
T Consensus 85 l~~aD~~i~Vvd~~~g~~~~~~ 106 (268)
T cd04170 85 LRAADAALVVVSAQSGVEVGTE 106 (268)
T ss_pred HHHCCEEEEEEeCCCCCCHHHH
Confidence 889999876554433
No 214
>KOG1707|consensus
Probab=98.50 E-value=1e-07 Score=69.98 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=62.9
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
-.+.-+.+|+.|||||||+..+...+|+++.++....-.. .+.-.++...|.|++..+.-+. .++|
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvy 87 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVY 87 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEE
Confidence 3455556799999999999999999999776654432211 2344567789999974433222 7789
Q ss_pred ECCChhhHHHHH-HHHHHHHH
Q psy2967 80 DAADTDKLEASR-NELHALIE 99 (101)
Q Consensus 80 d~~~~~sf~~~~-~~~~~i~~ 99 (101)
+++++.+.+.+. .|+..+.+
T Consensus 88 avd~~~T~D~ist~WLPlir~ 108 (625)
T KOG1707|consen 88 AVDDESTVDRISTKWLPLIRQ 108 (625)
T ss_pred ecCChHHhhhhhhhhhhhhhc
Confidence 999999999994 69988765
No 215
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.50 E-value=3.2e-07 Score=66.70 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=56.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEe------cCcEEEEEEeeCCCCccce----------------E
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT------KGNVTIKVWDIGGQPRFRS----------------I 76 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~i~D~~G~~~~~~----------------i 76 (101)
+.+|+.++|||+|+.+|.+.+ .+.++.+..|..++ .....+.+|-..|...+.. |
T Consensus 29 lvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vv 105 (472)
T PF05783_consen 29 LVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVV 105 (472)
T ss_pred EEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEE
Confidence 446899999999999987543 45677776664422 1235789998887654443 8
Q ss_pred EEEECCChhh-HHHHHHHHHHHHHh
Q psy2967 77 YMVDAADTDK-LEASRNELHALIEK 100 (101)
Q Consensus 77 ~v~d~~~~~s-f~~~~~~~~~i~~~ 100 (101)
+|.|++.+.. ++.+..|+.-+.++
T Consensus 106 IvlDlS~PW~~~esL~~W~~vl~~~ 130 (472)
T PF05783_consen 106 IVLDLSKPWNIMESLEKWLSVLREH 130 (472)
T ss_pred EEecCCChHHHHHHHHHHHHHHHHH
Confidence 8999999987 45778888766554
No 216
>KOG0090|consensus
Probab=98.49 E-value=6.8e-07 Score=58.78 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=54.2
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce---------------EE
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---------------IY 77 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------------i~ 77 (101)
.+..+|+ .++|||+|..++..+... .+.+++..+.-....++-...+.|.+|+++.|. ||
T Consensus 40 ~Vll~Gl----~dSGKT~LF~qL~~gs~~-~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGL----SDSGKTSLFTQLITGSHR-GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEec----CCCCceeeeeehhcCCcc-CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 4445555 599999999999998655 344444555444444555589999999998766 88
Q ss_pred EEECC-ChhhHHHHHHHHHHHH
Q psy2967 78 MVDAA-DTDKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~-~~~sf~~~~~~~~~i~ 98 (101)
|+|.. .......+.+.+-+++
T Consensus 115 VVDSa~f~k~vrdvaefLydil 136 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDIL 136 (238)
T ss_pred EEeccccchhhHHHHHHHHHHH
Confidence 88865 3334455555555544
No 217
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.49 E-value=1.8e-07 Score=69.75 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=49.1
Q ss_pred eccCCCcceeeeeccccC--cC-----CCCC------CCccceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSG--QF-----SQDM------IPTVGFNMR----KI-----TKGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~-----~~~~------~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|..++|||||+.++... .+ ...+ +.+.|..+. .+ +++.+.+.+|||+|+..|..
T Consensus 13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~ 92 (600)
T PRK05433 13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVS 92 (600)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHH
Confidence 599999999999999752 11 1111 112232221 12 34578999999999998864
Q ss_pred ---------EEEEECCChhhHHHHHHHH
Q psy2967 76 ---------IYMVDAADTDKLEASRNEL 94 (101)
Q Consensus 76 ---------i~v~d~~~~~sf~~~~~~~ 94 (101)
|+|+|.++....+....|.
T Consensus 93 ~sl~~aD~aILVVDas~gv~~qt~~~~~ 120 (600)
T PRK05433 93 RSLAACEGALLVVDASQGVEAQTLANVY 120 (600)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 9999999876555554443
No 218
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.46 E-value=2.3e-07 Score=60.14 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=33.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccce-EEE----EEe-cCcEEEEEEeeCCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGF-NMR----KIT-KGNVTIKVWDIGGQP 71 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~-~~~----~~~-~~~~~~~i~D~~G~~ 71 (101)
.+|++|||||||++.+.+..+.....++.+. ... .+. .....+.+||++|..
T Consensus 6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~ 63 (197)
T cd04104 6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIG 63 (197)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCC
Confidence 4699999999999999986654433333331 110 111 112468999999974
No 219
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.45 E-value=8.9e-07 Score=57.21 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=36.9
Q ss_pred eccCCCcceeeeeccccCcCCCCC----CCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDM----IPTVGFNMRKITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (101)
+|.+|||||||++.+++.+..... ..|...........+..+.+.||+|-..
T Consensus 6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d 61 (196)
T cd01852 6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFD 61 (196)
T ss_pred ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence 699999999999999976543211 2344444444455778899999999654
No 220
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.45 E-value=1.7e-07 Score=61.20 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=42.2
Q ss_pred eccCCCcceeeeeccccCc--CCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|.+++|||||+.++.... ... +..-|+......+..++..+.+|||
T Consensus 5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDT 84 (208)
T cd04166 5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADT 84 (208)
T ss_pred EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEEC
Confidence 5889999999999986421 110 0011111222234567788999999
Q ss_pred CCCCccce------------EEEEECCCh
Q psy2967 68 GGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~ 84 (101)
+|+++|.. ++|+|.++.
T Consensus 85 pG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 85 PGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred CcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 99987643 889998865
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.40 E-value=4.9e-07 Score=67.42 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=50.4
Q ss_pred eccCCCcceeeeecccc--CcCCCCC----------------CCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQDM----------------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|..++|||||+.++.. +.+.... ..|+......+.++++++.+|||+|+..|..
T Consensus 7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~ 86 (594)
T TIGR01394 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLG 86 (594)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHH
Confidence 48889999999999885 4443221 1222222234678899999999999988764
Q ss_pred -----EEEEECCChhhHHHHHHHHHHH
Q psy2967 76 -----IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 76 -----i~v~d~~~~~sf~~~~~~~~~i 97 (101)
++|+|.++.. ....+.|+..+
T Consensus 87 ~aD~alLVVDa~~G~-~~qT~~~l~~a 112 (594)
T TIGR01394 87 MVDGVLLLVDASEGP-MPQTRFVLKKA 112 (594)
T ss_pred hCCEEEEEEeCCCCC-cHHHHHHHHHH
Confidence 8899987632 23334444443
No 222
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.37 E-value=1.5e-06 Score=60.29 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=59.4
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCcEEEEEEeeCCCCccc--e--------------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFR--S-------------- 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-------------- 75 (101)
.|++- ..|.||||||||++.+..-+.. ..| -.|-++++-.+..+...+++.||+|-=.-+ .
T Consensus 168 ~pTiv-VaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 168 LPTIV-VAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCeEE-EecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 45544 3499999999999999975432 233 356678887888899999999999952111 1
Q ss_pred -----EEEEECCChh--hHHHHHHHHHHHHHh
Q psy2967 76 -----IYMVDAADTD--KLEASRNELHALIEK 100 (101)
Q Consensus 76 -----i~v~d~~~~~--sf~~~~~~~~~i~~~ 100 (101)
+|+||.+... +.+.-...+.++...
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 8889987643 445545556665543
No 223
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.37 E-value=1.6e-06 Score=58.40 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=39.5
Q ss_pred ceeeeEeccCCCcceeeeeccccCcCCC--CC-CCccceEEEEEecCcEEEEEEeeCCCCcc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQFSQ--DM-IPTVGFNMRKITKGNVTIKVWDIGGQPRF 73 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (101)
+..-+.+|.+|||||||++.+.+..... .. ..|...........+..+.+|||+|-...
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3344457999999999999999865422 12 23333333344556788999999997644
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.31 E-value=6.3e-07 Score=67.09 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=48.1
Q ss_pred eccCCCcceeeeecccc---CcCCCC--CCCccceEEEEEec-CcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 21 MRKITKGNVTIWPVPLS---GQFSQD--MIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~---~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+|..++|||||++++.+ ..+.++ ...|+...+..+.. ++..+.+||++|+++|-. ++|+|..
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~ 85 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACD 85 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 59999999999999985 223333 24555544444322 345689999999998854 8899987
Q ss_pred C---hhhHHHH
Q psy2967 83 D---TDKLEAS 90 (101)
Q Consensus 83 ~---~~sf~~~ 90 (101)
+ +++.+.+
T Consensus 86 eg~~~qT~ehl 96 (614)
T PRK10512 86 DGVMAQTREHL 96 (614)
T ss_pred CCCcHHHHHHH
Confidence 6 4555544
No 225
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.29 E-value=4.9e-07 Score=58.86 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred EEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 60 VTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 60 ~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
..+.+||++|++++.. ++|+|.++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE 118 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence 6789999999987755 89999986
No 226
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.28 E-value=2.8e-06 Score=58.87 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=35.5
Q ss_pred eEeccCCCcceeeeeccccCcCC--CCCCC-ccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (101)
+.+|.+||||||++|++.+.+.. ....+ +...........+..+.++||+|...
T Consensus 42 llvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 42 LVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred EEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 34699999999999999976532 12221 12222222334678999999999764
No 227
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.28 E-value=5.2e-07 Score=56.20 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE-EecCcEEEEEEeeCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGG 69 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G 69 (101)
+.+|.+++|||||++++.... ...+.++.|..... ....+..+.+|||+|
T Consensus 105 ~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 105 GVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred EEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 567999999999999999654 44566777765422 212233799999998
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.27 E-value=8.7e-07 Score=58.76 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=44.5
Q ss_pred eccCCCcceeeeeccccCc--CCCC----------------CCCccceEEEE--Ee--------cCcEEEEEEeeCCCCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQD----------------MIPTVGFNMRK--IT--------KGNVTIKVWDIGGQPR 72 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~~----------------~~~t~~~~~~~--~~--------~~~~~~~i~D~~G~~~ 72 (101)
+|..++|||||+.+++... .... ..-|+...... .. ++++.+.+|||+|++.
T Consensus 6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~ 85 (222)
T cd01885 6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVD 85 (222)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccc
Confidence 5888999999999987421 1100 00111111111 12 3378999999999998
Q ss_pred cce------------EEEEECCChhhHHH
Q psy2967 73 FRS------------IYMVDAADTDKLEA 89 (101)
Q Consensus 73 ~~~------------i~v~d~~~~~sf~~ 89 (101)
|.. ++|+|+++..+.+.
T Consensus 86 f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 86 FSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred cHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 865 99999998766554
No 229
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.24 E-value=5.8e-07 Score=55.32 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=31.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccc--eEEEEEecCcEEEEEEeeCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~ 70 (101)
.+|.+|||||||++++...+... ...+.| .....+...+ .+.+|||+|-
T Consensus 88 ~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 88 LVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 35999999999999999876542 222222 2222222222 5799999994
No 230
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.20 E-value=5.6e-06 Score=59.20 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=34.3
Q ss_pred eccCCCcceeeeeccccCcCCC-CC-----CCccceEEEE-------------------Ee-cCcEEEEEEeeCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DM-----IPTVGFNMRK-------------------IT-KGNVTIKVWDIGGQ 70 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~-----~~t~~~~~~~-------------------~~-~~~~~~~i~D~~G~ 70 (101)
||.|+||||||+++++..++.. +| .|++|..... .+ ...+.+++||++|.
T Consensus 7 vG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 7 VGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 6999999999999999876542 23 3555543310 01 12377999999994
No 231
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.17 E-value=3.4e-06 Score=54.12 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=46.5
Q ss_pred eccCCCcceeeeeccccCcCC--C------------------CCCCccceEEEEEe--cCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--Q------------------DMIPTVGFNMRKIT--KGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|..++|||||+.++....-. . ...-|+........ .....+.+.|++|+..|..
T Consensus 9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~ 88 (188)
T PF00009_consen 9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMI 88 (188)
T ss_dssp EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHH
T ss_pred ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeeccc
Confidence 599999999999998853211 0 12233444445555 7889999999999987755
Q ss_pred ---------EEEEECCCh
Q psy2967 76 ---------IYMVDAADT 84 (101)
Q Consensus 76 ---------i~v~d~~~~ 84 (101)
|+|+|..+.
T Consensus 89 ~~~~~~D~ailvVda~~g 106 (188)
T PF00009_consen 89 RGLRQADIAILVVDANDG 106 (188)
T ss_dssp HHHTTSSEEEEEEETTTB
T ss_pred ceecccccceeeeecccc
Confidence 889998754
No 232
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.16 E-value=2.6e-06 Score=62.87 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=43.7
Q ss_pred eccCCCcceeeeecccc--CcCC---------------CCC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFS---------------QDM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~---------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~- 75 (101)
+|.+++|||||+.++.. +... .++ ..|+......+..+++.+.+|||+|+..|..
T Consensus 16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~ 95 (526)
T PRK00741 16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSED 95 (526)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHH
Confidence 58899999999999863 1110 000 0111122234677889999999999987654
Q ss_pred -----------EEEEECCChh
Q psy2967 76 -----------IYMVDAADTD 85 (101)
Q Consensus 76 -----------i~v~d~~~~~ 85 (101)
|+|+|.++..
T Consensus 96 ~~~~l~~aD~aIlVvDa~~gv 116 (526)
T PRK00741 96 TYRTLTAVDSALMVIDAAKGV 116 (526)
T ss_pred HHHHHHHCCEEEEEEecCCCC
Confidence 8999998753
No 233
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.16 E-value=9.4e-07 Score=60.11 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=39.9
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~ 72 (101)
.-|+.++.+|..|||||||+|.+..+...+-..--.+.+.. ......-.+.+||++|-+.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCccc
Confidence 36888888999999999999999976544321111121111 1234446789999999765
No 234
>COG1159 Era GTPase [General function prediction only]
Probab=98.15 E-value=2.3e-06 Score=58.69 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=45.6
Q ss_pred eccCCCcceeeeeccccCcCC--CCCCCccceEEEE-EecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.||||||||+|++++.+.. ..-..|.+-.+.. +..++..+.+.||+|-.+-+. +|
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilf 91 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILF 91 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEE
Confidence 599999999999999986542 2333444444443 456788999999999754433 78
Q ss_pred EEECCC
Q psy2967 78 MVDAAD 83 (101)
Q Consensus 78 v~d~~~ 83 (101)
|.|.++
T Consensus 92 vvd~~~ 97 (298)
T COG1159 92 VVDADE 97 (298)
T ss_pred EEeccc
Confidence 888876
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.14 E-value=3.3e-06 Score=60.17 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=42.4
Q ss_pred eccCCCcceeeeeccccC-----c--CC---------C--CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSG-----Q--FS---------Q--DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~-----~--~~---------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|-.++|||||+.++... + +. + +..-|+......+..++..+.+||++|+++|..
T Consensus 18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~ 97 (394)
T TIGR00485 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAA 97 (394)
T ss_pred EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHh
Confidence 488899999999998732 0 00 0 111222232233556678899999999998755
Q ss_pred -----EEEEECCC
Q psy2967 76 -----IYMVDAAD 83 (101)
Q Consensus 76 -----i~v~d~~~ 83 (101)
++|+|..+
T Consensus 98 ~~D~~ilVvda~~ 110 (394)
T TIGR00485 98 QMDGAILVVSATD 110 (394)
T ss_pred hCCEEEEEEECCC
Confidence 88899876
No 236
>KOG3886|consensus
Probab=98.10 E-value=1.9e-06 Score=57.59 Aligned_cols=66 Identities=21% Similarity=0.467 Sum_probs=44.0
Q ss_pred EeccCCCcceeeeeccccCc--CC-CCCCCccceEEEEEec-CcEEEEEEeeCCCCccce-----------------EEE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ--FS-QDMIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS-----------------IYM 78 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~--~~-~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----------------i~v 78 (101)
-+|..|+||||+--.+..+- +. ....+|+.+..-.+.. +++.+.+||.+||+.+-. +++
T Consensus 9 LMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~v 88 (295)
T KOG3886|consen 9 LMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYV 88 (295)
T ss_pred EeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeee
Confidence 35888999999976655332 11 1233455554434443 458899999999985433 889
Q ss_pred EECCChh
Q psy2967 79 VDAADTD 85 (101)
Q Consensus 79 ~d~~~~~ 85 (101)
||+..++
T Consensus 89 FDves~e 95 (295)
T KOG3886|consen 89 FDVESRE 95 (295)
T ss_pred eeccchh
Confidence 9998874
No 237
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.09 E-value=3e-06 Score=64.53 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=45.2
Q ss_pred eccCCCcceeeeeccccC---------------cCCCC---CCCccceEEE----EEecCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSG---------------QFSQD---MIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~---------------~~~~~---~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|..++|||||+.+++.. ++.+. ...|+..... .++++++.+.+|||+|+..|..
T Consensus 25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~ 104 (720)
T TIGR00490 25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVT 104 (720)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHH
Confidence 599999999999998642 22211 2335543322 2567789999999999988754
Q ss_pred ---------EEEEECCC
Q psy2967 76 ---------IYMVDAAD 83 (101)
Q Consensus 76 ---------i~v~d~~~ 83 (101)
|+|+|..+
T Consensus 105 ~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 105 RAMRAVDGAIVVVCAVE 121 (720)
T ss_pred HHHHhcCEEEEEEecCC
Confidence 88999876
No 238
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.08 E-value=6.1e-06 Score=56.19 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=42.7
Q ss_pred eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|.+++|||||++++.. +.... ...-|+......+..++.++.+|||+|+..+..
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 84 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERS 84 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 58899999999999863 21100 011122222234667889999999999876654
Q ss_pred -------EEEEECCCh
Q psy2967 76 -------IYMVDAADT 84 (101)
Q Consensus 76 -------i~v~d~~~~ 84 (101)
++|+|..+.
T Consensus 85 l~~aD~ailVVDa~~g 100 (270)
T cd01886 85 LRVLDGAVAVFDAVAG 100 (270)
T ss_pred HHHcCEEEEEEECCCC
Confidence 888898764
No 239
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=7.4e-06 Score=58.93 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=45.7
Q ss_pred eccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce---------------------E
Q psy2967 21 MRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS---------------------I 76 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~---------------------i 76 (101)
||-||||||||.||+++... ..+++-+.. -.+......+..+.+.||+|-+.... |
T Consensus 9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvil 88 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVIL 88 (444)
T ss_pred ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEE
Confidence 69999999999999998653 333333333 33345667777899999999875442 8
Q ss_pred EEEECCC
Q psy2967 77 YMVDAAD 83 (101)
Q Consensus 77 ~v~d~~~ 83 (101)
||+|...
T Consensus 89 fvVD~~~ 95 (444)
T COG1160 89 FVVDGRE 95 (444)
T ss_pred EEEeCCC
Confidence 8999876
No 240
>KOG1423|consensus
Probab=98.06 E-value=1e-05 Score=56.04 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=36.8
Q ss_pred eccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (101)
+|.||||||+|.|+.++.+... ....|..-..-.+..+...+.++||+|--
T Consensus 78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCccc
Confidence 5999999999999999876542 22222222223467788999999999953
No 241
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.05 E-value=2.5e-06 Score=56.19 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=25.1
Q ss_pred EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 54 KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 54 ~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+..++..+.+||++|+..|.. |+|+|.++.
T Consensus 71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 3566789999999999876544 889999874
No 242
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.05 E-value=6.8e-06 Score=62.31 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=46.3
Q ss_pred eccCCCcceeeeecccc--CcCCC--C----------------CCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ--D----------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~--~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|-.++|||||++++.. +.... . ..-|+......+..++..+.+|||+|+.++..
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~ 95 (689)
T TIGR00484 16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERS 95 (689)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHH
Confidence 59999999999999863 11100 0 11122222234667889999999999987654
Q ss_pred -------EEEEECCChhhHHH
Q psy2967 76 -------IYMVDAADTDKLEA 89 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~ 89 (101)
++|+|.++....+.
T Consensus 96 l~~~D~~ilVvda~~g~~~~~ 116 (689)
T TIGR00484 96 LRVLDGAVAVLDAVGGVQPQS 116 (689)
T ss_pred HHHhCEEEEEEeCCCCCChhH
Confidence 89999987655443
No 243
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.04 E-value=3.6e-06 Score=60.19 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.6
Q ss_pred cEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 59 NVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 59 ~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
...+.+||++|+++|.. ++|+|.++
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 46899999999998866 89999985
No 244
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.03 E-value=5.3e-06 Score=61.26 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=43.2
Q ss_pred eccCCCcceeeeecccc--CcCCC---------------C---CCCccceEE----EEEecCcEEEEEEeeCCCCccce-
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ---------------D---MIPTVGFNM----RKITKGNVTIKVWDIGGQPRFRS- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~---------------~---~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~- 75 (101)
+|.+++|||||+.++.. +.... + .+...|..+ ..++.+++.+.+|||+|+..|..
T Consensus 17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~ 96 (527)
T TIGR00503 17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSED 96 (527)
T ss_pred EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHH
Confidence 58899999999999752 21100 0 011122222 34677889999999999987654
Q ss_pred -----------EEEEECCCh
Q psy2967 76 -----------IYMVDAADT 84 (101)
Q Consensus 76 -----------i~v~d~~~~ 84 (101)
|+|+|.++.
T Consensus 97 ~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 97 TYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred HHHHHHhCCEEEEEEECCCC
Confidence 889998864
No 245
>KOG1489|consensus
Probab=98.03 E-value=1.1e-05 Score=56.07 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=51.3
Q ss_pred cceeeeEeccCCCcceeeeeccccCcC-CCCC-----CCccceEEEEEecCcE-EEEEEeeCCCCccce-----------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQF-SQDM-----IPTVGFNMRKITKGNV-TIKVWDIGGQPRFRS----------- 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~-~~~~-----~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~----------- 75 (101)
|+-+|+ ||-||+|||||++.+..-+. ...| .|++| .+..... .+.+=|.+|--+=..
T Consensus 196 iadvGL-VG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 196 IADVGL-VGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred ecccce-ecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHH
Confidence 556665 59999999999999986442 1122 34444 3333333 288889988532211
Q ss_pred --------EEEEECCCh---hhHHHHHHHHHHH
Q psy2967 76 --------IYMVDAADT---DKLEASRNELHAL 97 (101)
Q Consensus 76 --------i~v~d~~~~---~sf~~~~~~~~~i 97 (101)
+||+|++.. +-++.+.....|+
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL 303 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL 303 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHH
Confidence 889999988 6676666555544
No 246
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.02 E-value=4.4e-06 Score=59.89 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 60 VTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 60 ~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
..+.+||++|+++|.. ++|+|.++
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~ 120 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE 120 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 6899999999988754 88999985
No 247
>KOG1191|consensus
Probab=98.01 E-value=8e-06 Score=59.36 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=37.7
Q ss_pred eccCCCcceeeeeccccCcCC--CCCCCccceEEE-EEecCcEEEEEEeeCCCCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~ 72 (101)
+|.||||||||+|.+...+.. ....-|...-++ .++.+++.+.+.||+|-.+
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 499999999999999976533 222233333333 3678999999999999765
No 248
>PRK12740 elongation factor G; Reviewed
Probab=98.01 E-value=7.7e-06 Score=61.74 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=49.1
Q ss_pred eccCCCcceeeeeccccCc--CCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|..++|||||+.++.... ... +...|++.....+..+++.+.+||++|+..+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5788999999999984311 000 122344444455677889999999999976533
Q ss_pred -------EEEEECCChhhHHHHH
Q psy2967 76 -------IYMVDAADTDKLEASR 91 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~~ 91 (101)
++|+|.++..+.....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~ 103 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET 103 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH
Confidence 8899998876655543
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=97.94 E-value=6.6e-06 Score=60.09 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=45.1
Q ss_pred cceeeeE-eccCCCcceeeeeccccC------cCCCCC--------CCccceE----EEEEecCcEEEEEEeeCCCCccc
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSG------QFSQDM--------IPTVGFN----MRKITKGNVTIKVWDIGGQPRFR 74 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~------~~~~~~--------~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~ 74 (101)
-|.+.+. +|..++|||||+.+++.. ...+.+ +...|.. ...+..++..+.++|++|+++|-
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 3455555 499999999999999851 111100 1112222 22345667889999999998875
Q ss_pred e------------EEEEECCCh
Q psy2967 75 S------------IYMVDAADT 84 (101)
Q Consensus 75 ~------------i~v~d~~~~ 84 (101)
. ++|+|..+-
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCC
Confidence 4 777876643
No 250
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=3.6e-05 Score=55.48 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=37.9
Q ss_pred eEeccCCCcceeeeeccccCcCC--CCCCCccceEE-EEEecCcEEEEEEeeCCCCc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNM-RKITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~ 72 (101)
-.+|-||||||||+|++.+.+-. ....-|....+ ..++.++-.+.+.||+|-.+
T Consensus 182 aiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRr 238 (444)
T COG1160 182 AIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRR 238 (444)
T ss_pred EEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCc
Confidence 33699999999999999976532 22233333333 34677888999999999754
No 251
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.93 E-value=8.2e-06 Score=51.72 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=32.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceE--EEEEecCcEEEEEEeeCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN--MRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~ 70 (101)
.+|.++||||||++++....+. ...+..+.. ...+... ..+.++||+|-
T Consensus 120 ~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 120 VVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred EECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4699999999999999987664 222222222 2222222 45789999983
No 252
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.92 E-value=3.4e-05 Score=50.63 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=33.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCC----CCccceEEEEEecCcEEEEEEeeCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDM----IPTVGFNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (101)
.+|..|+||||+.+.+.+.+..+.. ..|..+........+..+.++||+|-
T Consensus 5 llG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl 59 (212)
T PF04548_consen 5 LLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGL 59 (212)
T ss_dssp EECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SS
T ss_pred EECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCC
Confidence 4699999999999999976644322 23444555555678899999999994
No 253
>KOG3905|consensus
Probab=97.90 E-value=3e-05 Score=54.38 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=54.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEE--e----cCcEEEEEEeeCCCCccce----------------E
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI--T----KGNVTIKVWDIGGQPRFRS----------------I 76 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~--~----~~~~~~~i~D~~G~~~~~~----------------i 76 (101)
+++|+.++|||||+.++.+.+ .+.+-.|..|..+ . ..-..+.+|-..|...... |
T Consensus 56 lvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi 132 (473)
T KOG3905|consen 56 LVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI 132 (473)
T ss_pred EEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence 345899999999999998765 3444455555432 2 2236778887777653332 8
Q ss_pred EEEECCChhh-HHHHHHHHHHHHHh
Q psy2967 77 YMVDAADTDK-LEASRNELHALIEK 100 (101)
Q Consensus 77 ~v~d~~~~~s-f~~~~~~~~~i~~~ 100 (101)
++.|++++.. ++.+++|..-+.+|
T Consensus 133 ltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 133 LTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHH
Confidence 8899999954 67778998877665
No 254
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.88 E-value=1.4e-05 Score=51.99 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=40.4
Q ss_pred eccCCCcceeeeeccccCc--------CCC----------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--------FSQ----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--------~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|-.++|||||+.++.... ... ...-|+......+..++..+.+.||+|+..|..
T Consensus 8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~ 87 (195)
T cd01884 8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAA 87 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhh
Confidence 4889999999999987530 000 011112222223456678889999999876644
Q ss_pred -----EEEEECCC
Q psy2967 76 -----IYMVDAAD 83 (101)
Q Consensus 76 -----i~v~d~~~ 83 (101)
++|+|...
T Consensus 88 ~~D~~ilVvda~~ 100 (195)
T cd01884 88 QMDGAILVVSATD 100 (195)
T ss_pred hCCEEEEEEECCC
Confidence 77888765
No 255
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.86 E-value=2.8e-05 Score=54.16 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=47.0
Q ss_pred eccCCCcceeeeeccccCcCCC-CCC-CccceEEEEEecCcEEEEEEeeCCCCccc--------e-----------EEEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFR--------S-----------IYMV 79 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~-----------i~v~ 79 (101)
||.|+||||||++.+.+-+..- +|+ .|...-=-.+.+++..+++.|++|--.-. . ++|.
T Consensus 69 VGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVl 148 (365)
T COG1163 69 VGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVL 148 (365)
T ss_pred EcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEE
Confidence 5889999999999999754321 222 11111111267899999999998642111 1 8889
Q ss_pred ECCChhh-HHHHHHHHH
Q psy2967 80 DAADTDK-LEASRNELH 95 (101)
Q Consensus 80 d~~~~~s-f~~~~~~~~ 95 (101)
|+..... .+.+.+.+.
T Consensus 149 d~~~~~~~~~~i~~ELe 165 (365)
T COG1163 149 DVFEDPHHRDIIERELE 165 (365)
T ss_pred ecCCChhHHHHHHHHHH
Confidence 9986655 445544443
No 256
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.86 E-value=7e-06 Score=52.74 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.3
Q ss_pred EeccCCCcceeeeeccccCc
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~ 39 (101)
.+|.+|||||||++.+....
T Consensus 132 ~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 132 VVGATNVGKSTLINALLKKD 151 (190)
T ss_pred EEcCCCCCHHHHHHHHHHhc
Confidence 46999999999999998754
No 257
>PRK12736 elongation factor Tu; Reviewed
Probab=97.82 E-value=3.4e-05 Score=55.06 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred eccCCCcceeeeeccccCc-------CC---------C--CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSGQ-------FS---------Q--DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~-------~~---------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|-.++|||||+.++.... +. + +..-|+......+..++..+.++|++|+++|-.
T Consensus 18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~ 97 (394)
T PRK12736 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA 97 (394)
T ss_pred EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHh
Confidence 5999999999999987521 00 0 111222222223445667889999999987754
Q ss_pred -----EEEEECCC
Q psy2967 76 -----IYMVDAAD 83 (101)
Q Consensus 76 -----i~v~d~~~ 83 (101)
++|+|..+
T Consensus 98 ~~d~~llVvd~~~ 110 (394)
T PRK12736 98 QMDGAILVVAATD 110 (394)
T ss_pred hCCEEEEEEECCC
Confidence 88899875
No 258
>KOG0705|consensus
Probab=97.81 E-value=8.3e-05 Score=55.11 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=60.4
Q ss_pred cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE--E-EecCcEEEEEEeeCCCCccce-------EEEEECC
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K-ITKGNVTIKVWDIGGQPRFRS-------IYMVDAA 82 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~ 82 (101)
||-..+- ||...+|||+|++||..+.+..+..| .+..++ . +++....+.+.|.+|...-.- ||||.+.
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~~~aQft~wvdavIfvf~~~ 106 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGHPDAQFCQWVDAVVFVFSVE 106 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCCchhhhhhhccceEEEEEec
Confidence 4444443 58899999999999999998855444 444432 2 567788899999888543222 9999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHAL 97 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i 97 (101)
|.++|+.++....++
T Consensus 107 d~~s~q~v~~l~~~l 121 (749)
T KOG0705|consen 107 DEQSFQAVQALAHEM 121 (749)
T ss_pred cccCHHHHHHHHhhc
Confidence 999999987665443
No 259
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.80 E-value=3.7e-05 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.8
Q ss_pred eccCCCcceeeeeccccCcCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ 42 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~ 42 (101)
+|+.++|||||+.+|..+.+.+
T Consensus 5 ~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 5 VGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred ECCCCCCHHHHHHHHHhCCcCC
Confidence 5999999999999999876643
No 260
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.80 E-value=1.3e-05 Score=50.11 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=29.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGG 69 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G 69 (101)
.+|.+|||||||++++...... ...++-|... ..+.. +-.+.+.||+|
T Consensus 107 ~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 107 FIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred EEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 3699999999999999875432 2222222211 11221 12367889998
No 261
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.80 E-value=8.2e-05 Score=51.75 Aligned_cols=56 Identities=25% Similarity=0.472 Sum_probs=44.5
Q ss_pred CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh----------hhHHHHHHHHHHHHH
Q psy2967 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT----------DKLEASRNELHALIE 99 (101)
Q Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~----------~sf~~~~~~~~~i~~ 99 (101)
..||.|+....+..+++.+.+||++||...|. +||+|+++. .+++++...++++.+
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 35777777777888899999999999987666 899999974 567777777777654
No 262
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.80 E-value=0.00012 Score=55.42 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=36.5
Q ss_pred eeeEeccCCCcceeeeeccccCc-CCCC-C-CCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967 17 VGFNMRKITKGNVTIWPVPLSGQ-FSQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~~~-~~~~-~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (101)
.-+.+|.+||||||++|.+++.. +... . ..|...........+..+.++||+|-..
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~d 178 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKS 178 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCc
Confidence 34456999999999999999865 3222 1 2333332222234567899999999764
No 263
>PRK12735 elongation factor Tu; Reviewed
Probab=97.79 E-value=1.5e-05 Score=56.86 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=43.7
Q ss_pred ceeeeE-eccCCCcceeeeeccccC-------cCC-----C------CCCCccceEEEEEecCcEEEEEEeeCCCCccce
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLSG-------QFS-----Q------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~~-------~~~-----~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 75 (101)
|.+.+. +|-.++|||||+.++... .+. + ..--|+......+..++..+.++|++|+++|-.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 444444 499999999999999851 110 0 011111222222445667889999999987644
Q ss_pred ------------EEEEECCCh
Q psy2967 76 ------------IYMVDAADT 84 (101)
Q Consensus 76 ------------i~v~d~~~~ 84 (101)
++|+|..+.
T Consensus 91 ~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHhhhccCCEEEEEEECCCC
Confidence 888888763
No 264
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.79 E-value=2.1e-05 Score=50.28 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=31.2
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGG 69 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G 69 (101)
-..+|.+|||||||++++.+.... ...+.-|... ..+.. .-.+.++|++|
T Consensus 120 ~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 120 VGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred EEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 345799999999999999976542 2222223221 22222 23578999998
No 265
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.73 E-value=6.4e-05 Score=56.49 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=43.8
Q ss_pred eccCCCcceeeeeccccCc-CCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQ-FSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
+|.||||||||.|++++.. -..++. -+-++.+ ....++..+++.|.+|--.... |-
T Consensus 9 vGNPNvGKTtlFN~LTG~~q~VgNwp-GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivn 87 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQKVGNWP-GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVN 87 (653)
T ss_pred ecCCCccHHHHHHHHhccCceecCCC-CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEE
Confidence 5999999999999999743 222222 1222222 2567778899999999644333 55
Q ss_pred EEECCChhh
Q psy2967 78 MVDAADTDK 86 (101)
Q Consensus 78 v~d~~~~~s 86 (101)
|.|.+|.++
T Consensus 88 VvDAtnLeR 96 (653)
T COG0370 88 VVDATNLER 96 (653)
T ss_pred EcccchHHH
Confidence 778888766
No 266
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.73 E-value=0.00016 Score=50.82 Aligned_cols=56 Identities=21% Similarity=0.454 Sum_probs=45.2
Q ss_pred CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh----------hhHHHHHHHHHHHHH
Q psy2967 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT----------DKLEASRNELHALIE 99 (101)
Q Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~----------~sf~~~~~~~~~i~~ 99 (101)
..||.|+....+..++..+.+||.+||...|. +||+|+++. .+++++...++.+++
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 45777888778888999999999999987666 889999973 567888777777664
No 267
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.71 E-value=3.5e-05 Score=52.51 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=31.3
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 70 (101)
-+.+|.+|||||||++++....... ..+..|... ..+... -.+.++||+|-
T Consensus 121 ~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 121 AMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 3446999999999999998755321 122222111 122222 24789999997
No 268
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.70 E-value=1e-05 Score=58.64 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.4
Q ss_pred EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 54 KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 54 ~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+..++..+.+.|++|+++|-. |+|+|.++
T Consensus 79 ~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 3566788999999999998865 99999886
No 269
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.69 E-value=5.1e-05 Score=52.03 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=32.5
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~ 71 (101)
...+|.+|||||||++++...... ...++-|... ..+.. +-.+.++||+|--
T Consensus 124 ~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 124 AMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred EEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence 334699999999999999976543 2222223221 22222 1247899999963
No 270
>PRK12739 elongation factor G; Reviewed
Probab=97.57 E-value=0.00022 Score=54.32 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=43.8
Q ss_pred eccCCCcceeeeeccccC--cCC------C------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFS------Q------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|-.++|||||++++... ... . ...-|+......+..++..+.++||+|+..|..
T Consensus 14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~a 93 (691)
T PRK12739 14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERS 93 (691)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHH
Confidence 599999999999998631 110 0 111222232334567889999999999876544
Q ss_pred -------EEEEECCChh
Q psy2967 76 -------IYMVDAADTD 85 (101)
Q Consensus 76 -------i~v~d~~~~~ 85 (101)
|+|+|..+..
T Consensus 94 l~~~D~~ilVvDa~~g~ 110 (691)
T PRK12739 94 LRVLDGAVAVFDAVSGV 110 (691)
T ss_pred HHHhCeEEEEEeCCCCC
Confidence 8899987653
No 271
>CHL00071 tufA elongation factor Tu
Probab=97.57 E-value=6.1e-05 Score=54.03 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=42.8
Q ss_pred ceeeeE-eccCCCcceeeeeccccCcCC------CCCC--------CccceEE----EEEecCcEEEEEEeeCCCCccce
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLSGQFS------QDMI--------PTVGFNM----RKITKGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~~~~~------~~~~--------~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~ 75 (101)
|.+.+. +|-+++|||||+++++...-. ..+. -..|... ..+..++..+.+.|++|+.+|-.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 334444 499999999999999853110 0000 0012221 22445667888999999887644
Q ss_pred ------------EEEEECCC
Q psy2967 76 ------------IYMVDAAD 83 (101)
Q Consensus 76 ------------i~v~d~~~ 83 (101)
++|+|..+
T Consensus 91 ~~~~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred HHHHHHHhCCEEEEEEECCC
Confidence 77888765
No 272
>KOG1707|consensus
Probab=97.56 E-value=0.0002 Score=53.18 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEE----EEEecCcEEEEEEeeCCC--Cccce--------EEEEEC
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM----RKITKGNVTIKVWDIGGQ--PRFRS--------IYMVDA 81 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~--~~~~~--------i~v~d~ 81 (101)
.-.+++|+.++|||.++..|.++.+..++..+....+ ..+.+....+.+-|..-. ....+ .++||.
T Consensus 426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke~~cDv~~~~YDs 505 (625)
T KOG1707|consen 426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKEAACDVACLVYDS 505 (625)
T ss_pred eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCccceeeeEEEeccc
Confidence 3446679999999999999999887776555554333 234444455555554421 11111 889999
Q ss_pred CChhhHHHHHHH
Q psy2967 82 ADTDKLEASRNE 93 (101)
Q Consensus 82 ~~~~sf~~~~~~ 93 (101)
+++.||+-+...
T Consensus 506 S~p~sf~~~a~v 517 (625)
T KOG1707|consen 506 SNPRSFEYLAEV 517 (625)
T ss_pred CCchHHHHHHHH
Confidence 999999877543
No 273
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.55 E-value=0.0001 Score=50.44 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=32.0
Q ss_pred eccCCCcceeeeeccccCcCCC-CC-CCccceEEEEEe--cC---------------cEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRKIT--KG---------------NVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~--~~---------------~~~~~i~D~~G~~ 71 (101)
||.|+||||||+++++...... +| ..|+..+...+. .. ...+.+.|++|--
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 6899999999999999865422 22 233333332211 11 2358999999953
No 274
>PRK12288 GTPase RsgA; Reviewed
Probab=97.55 E-value=7e-05 Score=52.79 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=32.4
Q ss_pred EeccCCCcceeeeeccccCcCCC--C--------CCCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ--D--------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 74 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~--~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (101)
-+|.+|||||||+|++....... + .+.|....+..+..+. .+.||+|-..+.
T Consensus 210 ~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 210 FVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 36999999999999999754321 1 1123334333343332 488999976543
No 275
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.55 E-value=5.7e-05 Score=51.79 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=31.4
Q ss_pred eEeccCCCcceeeeeccccCcCCCCC----------CCccceEEEE--Ee--cCcEEEEEEeeCCCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDM----------IPTVGFNMRK--IT--KGNVTIKVWDIGGQP 71 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~----------~~t~~~~~~~--~~--~~~~~~~i~D~~G~~ 71 (101)
+++|++|+|||||++.++........ .++..+.... +. +..+.+.++||+|-.
T Consensus 8 mVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfG 74 (281)
T PF00735_consen 8 MVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFG 74 (281)
T ss_dssp EEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CS
T ss_pred EEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcc
Confidence 45699999999999999876544321 1222222222 22 335788999999843
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=97.53 E-value=0.00033 Score=50.17 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=31.5
Q ss_pred eccCCCcceeeeeccccCcCCC-CCC-CccceEEEEEec-----------------CcEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DMI-PTVGFNMRKITK-----------------GNVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~-----------------~~~~~~i~D~~G~~ 71 (101)
||.||||||||++.+....... +|. .|+..+.-.+.. ....+.+.|++|-.
T Consensus 27 VG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 27 VGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred ECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 5999999999999998654321 222 223333322211 13468999999953
No 277
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.47 E-value=7.2e-05 Score=48.82 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.1
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccc----eEEEEEecCcEEEEEEeeCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVG----FNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~D~~G~ 70 (101)
+|-+|||||||++.+++.+-......|-| .++-.+... +.+.|.+|=
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGY 80 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGY 80 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCc
Confidence 59999999999999998663223333333 554444433 778899884
No 278
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.47 E-value=0.00012 Score=52.48 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=41.2
Q ss_pred eccCCCcceeeeeccccCc--CCC---------------------------------CCCCccceEEEEEecCcEEEEEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQ---------------------------------DMIPTVGFNMRKITKGNVTIKVW 65 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~---------------------------------~~~~t~~~~~~~~~~~~~~~~i~ 65 (101)
+|-.++|||||+.++.... ... +..-|+...+..+..++..+.++
T Consensus 6 vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~li 85 (406)
T TIGR02034 6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA 85 (406)
T ss_pred ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEE
Confidence 5889999999999986321 110 00011222223355677899999
Q ss_pred eeCCCCccce------------EEEEECCC
Q psy2967 66 DIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 66 D~~G~~~~~~------------i~v~d~~~ 83 (101)
|++|+++|-. ++|+|..+
T Consensus 86 DtPGh~~f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 86 DTPGHEQYTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 9999988754 88888754
No 279
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.40 E-value=0.00012 Score=53.11 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=43.0
Q ss_pred eccCCCcceeeeecccc--CcCCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|..++|||||+.+++. +.... +..-|+...+..+..++..+.+.|+
T Consensus 13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDt 92 (446)
T PTZ00141 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDA 92 (446)
T ss_pred EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEEC
Confidence 48899999999998764 11110 0112222223345677889999999
Q ss_pred CCCCccce------------EEEEECCC
Q psy2967 68 GGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~ 83 (101)
+|+++|-. ++|+|.++
T Consensus 93 PGh~~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 93 PGHRDFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred CChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence 99988755 88999875
No 280
>PRK12289 GTPase RsgA; Reviewed
Probab=97.40 E-value=0.00011 Score=51.84 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=31.9
Q ss_pred eEeccCCCcceeeeeccccCcCCC--CC--------CCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQ--DM--------IPTVGFNMRKITKGNVTIKVWDIGGQPRFR 74 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~--~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (101)
+.+|.+|||||||+|.+....... .. +.|.......+.... .+.||+|-..+.
T Consensus 176 v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 176 VVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred EEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 446999999999999999653221 11 123333333332222 688999975433
No 281
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.39 E-value=0.00013 Score=54.93 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=40.9
Q ss_pred eccCCCcceeeeeccccCc--CCCC-----------C----------------------CCccceEEEEEecCcEEEEEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQD-----------M----------------------IPTVGFNMRKITKGNVTIKVW 65 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~~-----------~----------------------~~t~~~~~~~~~~~~~~~~i~ 65 (101)
+|.+++|||||+.++.... ..+. . .-|+...+..+..++..+.++
T Consensus 30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~li 109 (632)
T PRK05506 30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVA 109 (632)
T ss_pred ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEE
Confidence 5999999999999988532 1100 0 011111222345567788999
Q ss_pred eeCCCCccce------------EEEEECCC
Q psy2967 66 DIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 66 D~~G~~~~~~------------i~v~d~~~ 83 (101)
|++|+++|.. ++|+|..+
T Consensus 110 DtPG~~~f~~~~~~~~~~aD~~llVvda~~ 139 (632)
T PRK05506 110 DTPGHEQYTRNMVTGASTADLAIILVDARK 139 (632)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 9999987654 78888754
No 282
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.38 E-value=0.00013 Score=50.88 Aligned_cols=51 Identities=16% Similarity=-0.002 Sum_probs=32.7
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~ 70 (101)
-+.||-||||||||++++.+.... ...+.-|.... .+.. .-.+.++||+|-
T Consensus 135 v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~-~~~i~LlDtPGi 187 (322)
T COG1161 135 VGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKL-DDGIYLLDTPGI 187 (322)
T ss_pred EEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEc-CCCeEEecCCCc
Confidence 445799999999999999986653 22222243321 1221 122889999985
No 283
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.36 E-value=0.00023 Score=52.10 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=42.2
Q ss_pred EeccCCCcceeeeeccccCc--CCCC---------------------------------CCCccceEEEEEecCcEEEEE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ--FSQD---------------------------------MIPTVGFNMRKITKGNVTIKV 64 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~--~~~~---------------------------------~~~t~~~~~~~~~~~~~~~~i 64 (101)
.+|-.++|||||+.+++... .... ..-|+...+..+..++..+.+
T Consensus 32 iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~ 111 (474)
T PRK05124 32 TCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFII 111 (474)
T ss_pred EECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEE
Confidence 35999999999999986421 1100 001222222335566788999
Q ss_pred EeeCCCCccce------------EEEEECCC
Q psy2967 65 WDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 65 ~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+|++|+++|.. ++|+|..+
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARK 142 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 99999988754 88888764
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.35 E-value=0.00087 Score=47.61 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=18.9
Q ss_pred eeeeEeccCCCcceeeeeccccCc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~ 39 (101)
.+|+ ||.||||||||++++....
T Consensus 4 ~vgI-VG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 4 KCGI-VGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred EEEE-ECCCCCCHHHHHHHHhCCC
Confidence 3443 6999999999999999765
No 285
>PRK00049 elongation factor Tu; Reviewed
Probab=97.33 E-value=0.00017 Score=51.62 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=40.6
Q ss_pred eccCCCcceeeeeccccCcCC----------------C--CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS----------------Q--DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~----------------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|-.++|||||+.++...... + ...-|+......+..++..+.+.|++|+.+|..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~ 97 (396)
T PRK00049 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA 97 (396)
T ss_pred EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhc
Confidence 488999999999998862100 0 011122222223445667888999999976644
Q ss_pred -----EEEEECCCh
Q psy2967 76 -----IYMVDAADT 84 (101)
Q Consensus 76 -----i~v~d~~~~ 84 (101)
++|+|..+.
T Consensus 98 ~aD~~llVVDa~~g 111 (396)
T PRK00049 98 QMDGAILVVSAADG 111 (396)
T ss_pred cCCEEEEEEECCCC
Confidence 778887653
No 286
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.32 E-value=0.00025 Score=47.08 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred eccCCCcceeeeeccccC--cCCC---CCCCccceEEEEEe---cCcEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFSQ---DMIPTVGFNMRKIT---KGNVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~~---~~~~t~~~~~~~~~---~~~~~~~i~D~~G~~ 71 (101)
+|++++|||+|+|++.+. .|.- ....|.|+-..... ..+..+.+.||.|-.
T Consensus 13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~ 71 (224)
T cd01851 13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTD 71 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcC
Confidence 499999999999999987 5542 22445565543322 245789999999864
No 287
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.28 E-value=0.00096 Score=41.55 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=18.7
Q ss_pred EeccCCCcceeeeeccccCcCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
-||+.+||||||++++.+.+..
T Consensus 6 liG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred EECCCCCCHHHHHHHHcCCCCC
Confidence 4699999999999999987643
No 288
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.28 E-value=0.0002 Score=48.12 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=31.5
Q ss_pred eEeccCCCcceeeeeccccCcCCC----------CCCCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQ----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (101)
.-+|.+|||||||++++....... ....|.......+. . -.++||+|-..
T Consensus 124 ~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~ 183 (245)
T TIGR00157 124 VFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNE 183 (245)
T ss_pred EEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCccc
Confidence 346999999999999999753221 11234444443342 2 27899999654
No 289
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.25 E-value=7.1e-05 Score=47.46 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=17.8
Q ss_pred eEeccCCCcceeeeeccccCc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~ 39 (101)
+-+|.+|||||||+|.+....
T Consensus 39 vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 39 VLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCCCHHHHHHHHHhhc
Confidence 346999999999999999763
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.24 E-value=0.00062 Score=48.50 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=26.2
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceE-----EEEEe-cCcEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFN-----MRKIT-KGNVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~-----~~~~~-~~~~~~~i~D~~G~~ 71 (101)
+|++|+|||||+|.+.+-...+......|.. -..+. .+--.+.+||.+|-.
T Consensus 41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIG 97 (376)
T ss_dssp EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GG
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCC
Confidence 4999999999999997632222111112210 01122 222358899999853
No 291
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.23 E-value=0.00019 Score=44.75 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=29.3
Q ss_pred EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGG 69 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G 69 (101)
.+|.+|+|||||++.+....-.. ....|........ +..+.+.||+|
T Consensus 105 ~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 105 VIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred EEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 36999999999999999754211 1122222222222 23588899988
No 292
>PLN03127 Elongation factor Tu; Provisional
Probab=97.23 E-value=0.00042 Score=50.43 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=43.9
Q ss_pred ceeeeE-eccCCCcceeeeeccccC------cC----------CCC--CCCccceEEEEEecCcEEEEEEeeCCCCccce
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLSG------QF----------SQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~~------~~----------~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 75 (101)
|.+.+. +|-.++|||||+.++... .. .++ ..-|+......+..++..+.+.|++|+.+|-.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence 334444 499999999999998621 10 000 11233333334556677889999999987754
Q ss_pred ------------EEEEECCC
Q psy2967 76 ------------IYMVDAAD 83 (101)
Q Consensus 76 ------------i~v~d~~~ 83 (101)
++|+|..+
T Consensus 140 ~~~~g~~~aD~allVVda~~ 159 (447)
T PLN03127 140 NMITGAAQMDGGILVVSAPD 159 (447)
T ss_pred HHHHHHhhCCEEEEEEECCC
Confidence 88888765
No 293
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.16 E-value=0.0021 Score=45.53 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=53.0
Q ss_pred cccceeeeEeccCCCcceeeeeccccCcCCCC----------CCCccceEEEE--EecC--cEEEEEEeeCCCCccceEE
Q psy2967 12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQD----------MIPTVGFNMRK--ITKG--NVTIKVWDIGGQPRFRSIY 77 (101)
Q Consensus 12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----------~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~i~ 77 (101)
.-++.--+++|++|.|||||++.+++.....+ ..||+.+.... +..+ .+.+.+.||+|-..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~---- 95 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF---- 95 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc----
Confidence 34666677789999999999999987533222 33555444433 3333 477888999986542
Q ss_pred EEECCChhhHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~ 98 (101)
+.|..+|+.+..++++..
T Consensus 96 ---idNs~~we~I~~yI~~q~ 113 (373)
T COG5019 96 ---IDNSKCWEPIVDYIDDQF 113 (373)
T ss_pred ---ccccccHHHHHHHHHHHH
Confidence 356677888777766543
No 294
>PRK00007 elongation factor G; Reviewed
Probab=97.16 E-value=0.00085 Score=51.20 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=42.2
Q ss_pred eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|-+++|||||++++.. +.... ...-|+......+..++..+.+.||+|+..|-.
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~a 95 (693)
T PRK00007 16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERS 95 (693)
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHH
Confidence 59999999999999963 21110 011122222233566788999999999876643
Q ss_pred -------EEEEECCCh
Q psy2967 76 -------IYMVDAADT 84 (101)
Q Consensus 76 -------i~v~d~~~~ 84 (101)
|+|+|...-
T Consensus 96 l~~~D~~vlVvda~~g 111 (693)
T PRK00007 96 LRVLDGAVAVFDAVGG 111 (693)
T ss_pred HHHcCEEEEEEECCCC
Confidence 888897654
No 295
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.12 E-value=0.0011 Score=45.89 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=15.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|||||||+|++..
T Consensus 170 ~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 170 LGQSGVGKSTLINALLP 186 (301)
T ss_pred ECCCCCcHHHHHHhhCc
Confidence 58999999999999996
No 296
>KOG1424|consensus
Probab=97.09 E-value=0.00039 Score=51.08 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=37.1
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccce--EEEEEecCcEEEEEEeeCCC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~ 70 (101)
..++|+ ||=|||||||++|.+++.+-+ ....|-|- .+.++.. .-.+.+.|++|-
T Consensus 314 ~vtVG~-VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l-s~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGF-VGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL-SPSVCLCDCPGL 369 (562)
T ss_pred eeEEEe-ecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc-CCCceecCCCCc
Confidence 678885 799999999999999988765 44555442 2233322 223667899884
No 297
>PRK13796 GTPase YqeH; Provisional
Probab=97.09 E-value=0.00035 Score=49.52 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=17.2
Q ss_pred eEeccCCCcceeeeeccccC
Q psy2967 19 FNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~ 38 (101)
+.||.+|||||||+|++...
T Consensus 164 ~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 164 YVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred EEEcCCCCcHHHHHHHHHhh
Confidence 44799999999999999853
No 298
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.98 E-value=0.00044 Score=48.92 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=17.3
Q ss_pred eEeccCCCcceeeeeccccC
Q psy2967 19 FNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~ 38 (101)
+.||.+|||||||++++...
T Consensus 158 ~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 158 YVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 44699999999999999874
No 299
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.91 E-value=0.0006 Score=46.83 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=17.1
Q ss_pred EeccCCCcceeeeeccccCc
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~ 39 (101)
-+|.+|||||||++.+.+..
T Consensus 166 ~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 166 LVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred EECCCCCCHHHHHHHHhchh
Confidence 36999999999999998754
No 300
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0011 Score=47.13 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred ceeeeEeccCCCcceeeeeccccCcCC-CCCC-CccceEE----EE----------Ee-cC---cEEEEEEeeCCCCcc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQFS-QDMI-PTVGFNM----RK----------IT-KG---NVTIKVWDIGGQPRF 73 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~~-~t~~~~~----~~----------~~-~~---~~~~~i~D~~G~~~~ 73 (101)
..+|+ ||.||||||||.+.++..+.. .+|+ .||..+. .. +. .+ ...+++.|.+|--+=
T Consensus 3 l~~GI-VGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGI-VGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEE-ecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 45565 699999999999999987632 2332 3444332 10 11 11 267889999986543
No 301
>KOG3887|consensus
Probab=96.89 E-value=0.0024 Score=43.41 Aligned_cols=63 Identities=25% Similarity=0.415 Sum_probs=38.5
Q ss_pred eccCCCcceeeeeccccCcCCCC---CCCccceEEEEEecCcEEEEEEeeCCCCccce---------------EEEEECC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQD---MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---------------IYMVDAA 82 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------------i~v~d~~ 82 (101)
+|-+.+||||+-+-..++-.+.+ .++|.......+.+.=+.+++||.+||-.+-. |||.|..
T Consensus 33 MG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQ 112 (347)
T KOG3887|consen 33 MGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQ 112 (347)
T ss_pred EeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEech
Confidence 57779999999776654422211 11222222222444457899999999965433 8888866
Q ss_pred C
Q psy2967 83 D 83 (101)
Q Consensus 83 ~ 83 (101)
+
T Consensus 113 d 113 (347)
T KOG3887|consen 113 D 113 (347)
T ss_pred H
Confidence 4
No 302
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.86 E-value=0.0018 Score=42.95 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=39.8
Q ss_pred ceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCc-----cce----EEEEECCCh
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPR-----FRS----IYMVDAADT 84 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~----i~v~d~~~~ 84 (101)
|.+-..+|.+|+|||+|++.+....-........|. +......+..+.+.|++|.-. .+. ++++|.+..
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~ 116 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDINAMIDIAKVADLVLLLIDASFG 116 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcC
Confidence 333334699999999999888754212111122221 122334667788999998531 000 778887654
No 303
>PRK00098 GTPase RsgA; Reviewed
Probab=96.81 E-value=0.00094 Score=46.09 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=16.6
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|.+|||||||++.+....
T Consensus 170 ~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999998643
No 304
>COG2262 HflX GTPases [General function prediction only]
Probab=96.80 E-value=0.0045 Score=44.46 Aligned_cols=77 Identities=25% Similarity=0.345 Sum_probs=48.9
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCC--CCCCCccceEEEEEecC-cEEEEEEeeCCCC---------ccce-----
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRKITKG-NVTIKVWDIGGQP---------RFRS----- 75 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~---------~~~~----- 75 (101)
-+|.+++ +|=.|+|||||+|++.+.... ...-.|.....+.+... +..+.+=||.|-- .|++
T Consensus 191 ~~p~vaL-vGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVAL-VGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEE-EeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 3555554 455699999999999864322 12335555555555433 5677788998842 2222
Q ss_pred ------EEEEECCChhhHHHH
Q psy2967 76 ------IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 ------i~v~d~~~~~sf~~~ 90 (101)
+.|+|.+++..-+.+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~ 290 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL 290 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH
Confidence 779999999554444
No 305
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.69 E-value=0.0035 Score=49.90 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=42.5
Q ss_pred CcceeeeeccccCcCCCC----CCCccceEEEEEec----------------CcEEEEEEeeCCCCccce----------
Q psy2967 26 KGNVTIWPVPLSGQFSQD----MIPTVGFNMRKITK----------------GNVTIKVWDIGGQPRFRS---------- 75 (101)
Q Consensus 26 vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~---------- 75 (101)
++||||+..+.+...... ....+|.....++. +.-.+.+|||+|++.|..
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 679999999987544321 22334543322211 011389999999998755
Q ss_pred --EEEEECCC---hhhHHHHH
Q psy2967 76 --IYMVDAAD---TDKLEASR 91 (101)
Q Consensus 76 --i~v~d~~~---~~sf~~~~ 91 (101)
++|+|+++ +++++.+.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~ 572 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN 572 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH
Confidence 89999986 66666654
No 306
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.64 E-value=0.0059 Score=43.11 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=29.9
Q ss_pred eccCCCcceeeeeccccCcC-CCCC-----CCccceEEEEEecCcEEEEEEeeCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQF-SQDM-----IPTVGFNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~-~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (101)
||-|++|||||++.+..-+. ..+| .|.+|+-. + ...-.+.+=|.+|-
T Consensus 165 VG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~--~-~~~~sfv~ADIPGL 217 (369)
T COG0536 165 VGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVR--V-DGGESFVVADIPGL 217 (369)
T ss_pred ccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEE--e-cCCCcEEEecCccc
Confidence 48899999999999886432 2233 34444322 1 34456777888875
No 307
>KOG1486|consensus
Probab=96.60 E-value=0.0056 Score=41.92 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=33.4
Q ss_pred cccceeeeEeccCCCcceeeeeccccCcCCC-CCCCccceEE-EEEecCcEEEEEEeeCCC
Q psy2967 12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNM-RKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~i~D~~G~ 70 (101)
..+.++|| |.||||+|+..+....... .|+=|.-..+ -.+..++..+++.|.+|.
T Consensus 63 aRValIGf----PSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGI 119 (364)
T KOG1486|consen 63 ARVALIGF----PSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGI 119 (364)
T ss_pred eEEEEecC----CCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCccc
Confidence 34555555 7999999999988543221 1211111001 125678899999999875
No 308
>KOG2655|consensus
Probab=96.55 E-value=0.0042 Score=44.13 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=44.2
Q ss_pred eeeEeccCCCcceeeeeccccCcCCCC---------CCCccceEEEE--Ee--cCcEEEEEEeeCCCCccceEEEEECCC
Q psy2967 17 VGFNMRKITKGNVTIWPVPLSGQFSQD---------MIPTVGFNMRK--IT--KGNVTIKVWDIGGQPRFRSIYMVDAAD 83 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~---------~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~i~v~d~~~ 83 (101)
--+.+|++|.|||||++.++...+..+ ...|..+.... +. +-.+.+.+.||+|-... +.|
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~-------vdn 95 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA-------VDN 95 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc-------ccc
Confidence 335569999999999999887654432 11233333322 33 33478889999986542 234
Q ss_pred hhhHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHA 96 (101)
Q Consensus 84 ~~sf~~~~~~~~~ 96 (101)
..+|..+..++++
T Consensus 96 s~~w~pi~~yi~~ 108 (366)
T KOG2655|consen 96 SNCWRPIVNYIDS 108 (366)
T ss_pred cccchhhhHHHHH
Confidence 4556666555544
No 309
>KOG1491|consensus
Probab=96.52 E-value=0.0023 Score=45.12 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.3
Q ss_pred ceeeeEeccCCCcceeeeeccccCcCCC-CC-CCccceEEEE--------------Ee---cCcEEEEEEeeCCCCccce
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRK--------------IT---KGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~--------------~~---~~~~~~~i~D~~G~~~~~~ 75 (101)
+.+|+ ||.|+||||||.+.+....... ++ -.||..+.-. +. .....++++|++|--+-.+
T Consensus 21 lkiGI-VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 21 LKIGI-VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred ceeeE-eeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 46665 6999999999999999765432 22 2444433211 11 1247899999998754333
No 310
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.45 E-value=0.0015 Score=50.89 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=22.7
Q ss_pred CcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 58 GNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
++..+.+.||+|+..|-. |+|+|..+--
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv 135 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC
Confidence 367889999999988755 8999987653
No 311
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.33 E-value=0.00088 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=18.6
Q ss_pred ccceeeeEeccCCCcceeeeeccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
+.|++++ +|.+|+|||||+.++.
T Consensus 5 ~~~ii~i-vG~sgsGKTTLi~~li 27 (173)
T PRK10751 5 MIPLLAI-AAWSGTGKTTLLKKLI 27 (173)
T ss_pred CceEEEE-ECCCCChHHHHHHHHH
Confidence 4666665 6999999999988876
No 312
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.29 E-value=0.0083 Score=44.25 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=28.8
Q ss_pred ecCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHH
Q psy2967 56 TKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNEL 94 (101)
Q Consensus 56 ~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~ 94 (101)
+++.+.+++.||+|+-.|.. ++++|.+.--.-+.+.+.+
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y 122 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 122 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH
Confidence 35679999999999988766 9999998754444443333
No 313
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.14 E-value=0.0012 Score=40.09 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=15.8
Q ss_pred eEeccCCCcceeeeeccc
Q psy2967 19 FNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~ 36 (101)
+.+|++|+||||+++++.
T Consensus 3 i~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 346999999999999987
No 314
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.019 Score=42.48 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=47.9
Q ss_pred EeccCCCcceeeeeccccCcCCC----CCCCccceEEEEEec-CcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ----DMIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
.+|--.-|||||+..+....... .+...+|......+. +.-.+.+.||+|++.|.. +||+|..
T Consensus 10 imGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~d 89 (509)
T COG0532 10 IMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAAD 89 (509)
T ss_pred EeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEcc
Confidence 46777999999999988754432 122334443333321 456889999999998877 8899887
Q ss_pred C---hhhHHHH
Q psy2967 83 D---TDKLEAS 90 (101)
Q Consensus 83 ~---~~sf~~~ 90 (101)
| +++.+.+
T Consensus 90 DGv~pQTiEAI 100 (509)
T COG0532 90 DGVMPQTIEAI 100 (509)
T ss_pred CCcchhHHHHH
Confidence 6 4555444
No 315
>KOG1490|consensus
Probab=96.06 E-value=0.012 Score=43.66 Aligned_cols=52 Identities=10% Similarity=-0.087 Sum_probs=35.7
Q ss_pred EeccCCCcceeeeeccccCcCCC-CCC-CccceEEEEEecCcEEEEEEeeCCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ-DMI-PTVGFNMRKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (101)
.+|-|+||||||++.....+..- .|. +|-+.....++.+-...++-||+|--
T Consensus 173 lcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGIL 226 (620)
T KOG1490|consen 173 VCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGIL 226 (620)
T ss_pred EecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCcccc
Confidence 35999999999999988765432 222 33334444466677788888998864
No 316
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.05 E-value=0.0018 Score=41.05 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=18.8
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++++++ +|..++|||||+.+++.
T Consensus 2 ~~Il~i-vG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGI-VGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEE-EecCCCChhhHHHHHHH
Confidence 566775 68899999999999864
No 317
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.96 E-value=0.0014 Score=38.81 Aligned_cols=19 Identities=11% Similarity=-0.139 Sum_probs=16.2
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
..|.+||||||+.+++...
T Consensus 4 I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3599999999999998763
No 318
>PTZ00416 elongation factor 2; Provisional
Probab=95.92 E-value=0.0055 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=21.4
Q ss_pred cEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 59 NVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 59 ~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
+..+.+.||+|+..|.. |+|+|..+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g 128 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG 128 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC
Confidence 67899999999987755 889998764
No 319
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=95.86 E-value=0.0074 Score=43.03 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=17.7
Q ss_pred eccCCCcceeeeeccccCcC
Q psy2967 21 MRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~ 40 (101)
||.|++|||||.+.+.....
T Consensus 8 vGlPn~GKSTlfnaLT~~~~ 27 (368)
T TIGR00092 8 VGLPNVGKSTLFAATTNLLG 27 (368)
T ss_pred ECCCCCChHHHHHHHhCCCc
Confidence 69999999999999997654
No 320
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=95.85 E-value=0.0043 Score=38.63 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.8
Q ss_pred EeccCCCcceeeeeccccCcC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~ 40 (101)
.+|..++|||||++.+++.+.
T Consensus 3 v~G~~ssGKSTliNaLlG~~i 23 (168)
T PF00350_consen 3 VVGQFSSGKSTLINALLGRPI 23 (168)
T ss_dssp EEEBTTSSHHHHHHHHHTSS-
T ss_pred EEcCCCCCHHHHHHHHHhccc
Confidence 368899999999999998763
No 321
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.81 E-value=0.0016 Score=42.40 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+..
T Consensus 12 ~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 12 GGGSGSGKTTVARKIYE 28 (207)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988763
No 322
>KOG0075|consensus
Probab=95.78 E-value=0.0095 Score=37.57 Aligned_cols=39 Identities=62% Similarity=0.851 Sum_probs=31.3
Q ss_pred ccccccccccccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967 3 LTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
...+|+++++++|++|+++-.-.-|--|+...-++|+..
T Consensus 39 ~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r 77 (186)
T KOG0075|consen 39 VIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 77 (186)
T ss_pred EEeeccchhhhcccccceeEEeccCceEEEEEecCCCcc
Confidence 356788999999999999988888888887777766543
No 323
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.74 E-value=0.0024 Score=40.69 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=25.9
Q ss_pred ccCCCcceeeeeccccCcCCCCCCCccceEEEEEe--cCcEEEEEEee
Q psy2967 22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT--KGNVTIKVWDI 67 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~D~ 67 (101)
|++|+|||||+++++..- .+...+.-|+....+. +..+-+.+.|.
T Consensus 6 G~pG~GKTTll~k~i~~l-~~~~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 6 GPPGVGKTTLLKKVIEEL-KKKGLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp S-TTSSHHHHHHHHHHHH-HHTCGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CcCCCCHHHHHHHHHHHh-hccCCccceEEeecccCCCceEEEEEEEC
Confidence 999999999999987421 1112233455544433 33455666665
No 324
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.72 E-value=0.0024 Score=40.51 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=17.5
Q ss_pred cceeeeEeccCCCcceeeeeccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
+|++.+ +|.+||||||+++++.
T Consensus 3 ~~ii~i-~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFI-VGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHH
Confidence 455554 6999999999998876
No 325
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=95.69 E-value=0.0066 Score=44.22 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=16.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.++|||||+++|++.
T Consensus 23 vGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 23 VGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred EcCCCCChHHHHHHHHhh
Confidence 588899999999999976
No 326
>KOG3859|consensus
Probab=95.66 E-value=0.0085 Score=41.58 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=36.7
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCC----CccceEEEE--Ee--cCcEEEEEEeeCCC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMI----PTVGFNMRK--IT--KGNVTIKVWDIGGQ 70 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~----~t~~~~~~~--~~--~~~~~~~i~D~~G~ 70 (101)
-++||..|.|||+|+..+.+..|..... |++.....+ +. +-.+++.|.||.|-
T Consensus 45 ilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 45 ILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred EEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 3567999999999999999877765432 343333222 22 44578899999874
No 327
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.62 E-value=0.0022 Score=38.29 Aligned_cols=21 Identities=10% Similarity=-0.157 Sum_probs=16.7
Q ss_pred eeEeccCCCcceeeeeccccC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~ 38 (101)
.+..|++|+|||++++++...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHH
Confidence 445699999999999999864
No 328
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.60 E-value=0.007 Score=46.59 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=42.7
Q ss_pred cceeeeEeccCCCcceeeeeccccCc--CCC---------CCC-------CccceEEE----EEecCcEEEEEEeeCCCC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQ--FSQ---------DMI-------PTVGFNMR----KITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~--~~~---------~~~-------~t~~~~~~----~~~~~~~~~~i~D~~G~~ 71 (101)
+.-+++ +|..++|||||+.+++... ... ++. -|+..... ....++..+.+.||+|+.
T Consensus 20 iRni~i-igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 20 IRNIGI-IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred ccEEEE-EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 334442 5999999999999987421 110 000 11111111 123357889999999998
Q ss_pred ccce------------EEEEECCCh
Q psy2967 72 RFRS------------IYMVDAADT 84 (101)
Q Consensus 72 ~~~~------------i~v~d~~~~ 84 (101)
.|.. |+|+|....
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCC
Confidence 8755 889997764
No 329
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.56 E-value=0.004 Score=40.72 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=21.0
Q ss_pred ccccceeeeEeccCCCcceeeeeccccC
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~ 38 (101)
++.-+.+-+.+|++|||||||++++...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445555555799999999999988753
No 330
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.0021 Score=43.38 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++-+.+
T Consensus 35 lGpSGcGKSTLLriiAG 51 (248)
T COG1116 35 LGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 48889999999998775
No 331
>PRK08118 topology modulation protein; Reviewed
Probab=95.53 E-value=0.0026 Score=40.31 Aligned_cols=19 Identities=11% Similarity=-0.115 Sum_probs=16.0
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|++|+|||||.+++..
T Consensus 5 ~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 5 ILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999998775
No 332
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.53 E-value=0.0063 Score=42.60 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=29.8
Q ss_pred cccceeeeEeccCCCcceeeeeccccCcCCCCCCCcc
Q psy2967 12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTV 48 (101)
Q Consensus 12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~ 48 (101)
..-|+++.+.|+.|+|||-|++-++..+..+-...|+
T Consensus 84 ~~qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETV 120 (369)
T PF02456_consen 84 GLQPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETV 120 (369)
T ss_pred CCCceEEEEECCCCCCHHHHHHHhhhcCcccCCCCce
Confidence 4468999999999999999999999887765444443
No 333
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.011 Score=43.22 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=35.5
Q ss_pred ccCCCcceeeeecccc--CcCCC------------------CCCCccceEEE----EEecCcEEEEEEeeCCCCccce
Q psy2967 22 RKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~ 75 (101)
--|.+|||||..++.- +.... +.+...|+++. ..++++..+++.||+|++.|..
T Consensus 19 SHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSE 96 (528)
T COG4108 19 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSE 96 (528)
T ss_pred ecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccch
Confidence 4578999999887542 21110 01122233332 3578899999999999999877
No 334
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.0024 Score=42.64 Aligned_cols=16 Identities=13% Similarity=0.003 Sum_probs=13.6
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|||||||++.+-
T Consensus 39 IGPSGcGKST~LR~lN 54 (253)
T COG1117 39 IGPSGCGKSTLLRCLN 54 (253)
T ss_pred ECCCCcCHHHHHHHHH
Confidence 4999999999987654
No 335
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.49 E-value=0.0027 Score=39.27 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.1
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|..++|||||+..++.
T Consensus 5 VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 5 VVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 368899999999988764
No 336
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.48 E-value=0.0032 Score=41.09 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.6
Q ss_pred ccceeeeEeccCCCcceeeeecccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+++ +|..|+|||||++++..
T Consensus 21 ~~~~i~~-~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNF-MSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEE-ECCCCCCHHHHHHHHHH
Confidence 4677775 69999999999988764
No 337
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.46 E-value=0.0026 Score=41.05 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|||||||++.+..
T Consensus 5 ~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 5 AGGSGSGKTTVAEEIIE 21 (198)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988754
No 338
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.45 E-value=0.002 Score=43.24 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+||||+.+.+.+
T Consensus 2 iGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 69999999999988764
No 339
>KOG1532|consensus
Probab=95.42 E-value=0.0038 Score=43.18 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.3
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
-|+.-+++|..|+|||||++|+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHH
Confidence 466777788899999999999875
No 340
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.36 E-value=0.0036 Score=40.41 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|||||||.+++..
T Consensus 5 ~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 5 AGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999987653
No 341
>KOG1547|consensus
Probab=95.29 E-value=0.046 Score=37.31 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=41.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCC---------CCCccceEEE--EEecC--cEEEEEEeeCCCCccceEEEEECCChh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQD---------MIPTVGFNMR--KITKG--NVTIKVWDIGGQPRFRSIYMVDAADTD 85 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~---------~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~i~v~d~~~~~ 85 (101)
++||.+|.|||||++.+........ +..|+..... .+..+ ..++.+.||+|-... +.|..
T Consensus 50 MVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq-------InN~n 122 (336)
T KOG1547|consen 50 MVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ-------INNDN 122 (336)
T ss_pred EEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc-------cCccc
Confidence 3459999999999998775433221 2223222221 23334 467778999985432 24445
Q ss_pred hHHHHHHHHHHH
Q psy2967 86 KLEASRNELHAL 97 (101)
Q Consensus 86 sf~~~~~~~~~i 97 (101)
-++-+.+++++.
T Consensus 123 cWePI~kyIneQ 134 (336)
T KOG1547|consen 123 CWEPIEKYINEQ 134 (336)
T ss_pred hhHHHHHHHHHH
Confidence 566665555543
No 342
>KOG4273|consensus
Probab=95.27 E-value=0.034 Score=38.16 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=48.1
Q ss_pred eEeccCCC--cceeeeeccccCcCCCCCCCccceEEE--EEecC----cEEEEEEeeCCCCccce----------EEEEE
Q psy2967 19 FNMRKITK--GNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKG----NVTIKVWDIGGQPRFRS----------IYMVD 80 (101)
Q Consensus 19 ~~vG~~~v--GKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~----~~~~~i~D~~G~~~~~~----------i~v~d 80 (101)
+++|.+|| ||-.|+.|+...+|.......-...+. +++.+ .+.+.|--.+....... +.+||
T Consensus 8 lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvfd 87 (418)
T KOG4273|consen 8 LVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVFD 87 (418)
T ss_pred EEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEEe
Confidence 34577798 999999999988877654433333322 23332 23333333222111111 88999
Q ss_pred CCChhhHHHHHHHHH
Q psy2967 81 AADTDKLEASRNELH 95 (101)
Q Consensus 81 ~~~~~sf~~~~~~~~ 95 (101)
++....+..++.|+.
T Consensus 88 lse~s~l~alqdwl~ 102 (418)
T KOG4273|consen 88 LSEKSGLDALQDWLP 102 (418)
T ss_pred ccchhhhHHHHhhcc
Confidence 999999999999986
No 343
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.26 E-value=0.0033 Score=41.99 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=15.9
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++|||||||++-+..-+
T Consensus 37 ~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 3899999999999887543
No 344
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.25 E-value=0.071 Score=35.94 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=21.6
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
..|.+. .+|+.++||||+++.+.+..+.
T Consensus 25 ~~p~i~-vvG~~~~GKSt~l~~i~g~~~~ 52 (240)
T smart00053 25 DLPQIA-VVGGQSAGKSSVLENFVGRDFL 52 (240)
T ss_pred CCCeEE-EEcCCCccHHHHHHHHhCCCcc
Confidence 455444 4799999999999999986633
No 345
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.24 E-value=0.0034 Score=39.51 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=14.7
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+..-+..|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34444569999999999997664
No 346
>PRK06762 hypothetical protein; Provisional
Probab=95.20 E-value=0.0054 Score=38.38 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=17.5
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|++-.-.|.+|+||||+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44444569999999999987764
No 347
>PRK07261 topology modulation protein; Provisional
Probab=95.18 E-value=0.004 Score=39.56 Aligned_cols=18 Identities=11% Similarity=-0.088 Sum_probs=15.3
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+|+|||||...+..
T Consensus 5 i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 468899999999998764
No 348
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.12 E-value=0.0039 Score=43.10 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=17.8
Q ss_pred ccceeeeEeccCCCcceeeeecccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+.++++ +|.+|+|||||+++++.
T Consensus 103 ~~~~v~l-~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 103 KQLVLNL-VSSPGSGKTTLLTETLM 126 (290)
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHH
Confidence 3455554 59999999999976654
No 349
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.0049 Score=43.47 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|||||||++-+.+-
T Consensus 35 lGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 389999999999988763
No 350
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.11 E-value=0.0035 Score=37.25 Aligned_cols=18 Identities=11% Similarity=-0.099 Sum_probs=15.8
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|++|+|||++++.+...
T Consensus 4 ~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQY 21 (132)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECcCCCCeeHHHHHHHhh
Confidence 599999999999998854
No 351
>PF05729 NACHT: NACHT domain
Probab=95.11 E-value=0.0043 Score=38.19 Aligned_cols=18 Identities=11% Similarity=-0.043 Sum_probs=15.7
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
..|++|+|||+++.+++.
T Consensus 5 I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 5 ISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EECCCCCChHHHHHHHHH
Confidence 359999999999998885
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.11 E-value=0.01 Score=44.89 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=16.8
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+--+||+||+|||+|++.++.
T Consensus 70 fIvavvGPpGtGKsTLirSlVr 91 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVR 91 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHH
Confidence 3334579999999999877663
No 353
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.10 E-value=0.0041 Score=36.54 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=17.4
Q ss_pred EeccCCCcceeeeeccccCcCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
-+|++|+|||+++..+...-..
T Consensus 7 l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EECCCCCcHHHHHHHHHhccCC
Confidence 3599999999999998865433
No 354
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.10 E-value=0.0037 Score=41.37 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.2
Q ss_pred eeeEeccCCCcceeeeeccc
Q psy2967 17 VGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~ 36 (101)
+|+ .|++|||||||++.+.
T Consensus 2 igI-~G~sGSGKTTla~~L~ 20 (220)
T cd02025 2 IGI-AGSVAVGKSTTARVLQ 20 (220)
T ss_pred EEe-eCCCCCCHHHHHHHHH
Confidence 444 4999999999998765
No 355
>PRK04040 adenylate kinase; Provisional
Probab=95.10 E-value=0.0052 Score=39.76 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=17.9
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+.+..|.+|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 44455579999999999988754
No 356
>KOG0462|consensus
Probab=95.06 E-value=0.044 Score=41.13 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=26.1
Q ss_pred cCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHH
Q psy2967 57 KGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEAS 90 (101)
Q Consensus 57 ~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~ 90 (101)
++++.+++.||+|+..|.. |+|+|.+.--.-+.+
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~ 167 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTV 167 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHH
Confidence 4569999999999998877 889998864333333
No 357
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.02 E-value=0.025 Score=41.79 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCcceeeeecccc--CcCCCCCC------------CccceEEE----EEecCcEEEEEEeeCCCCccce
Q psy2967 25 TKGNVTIWPVPLS--GQFSQDMI------------PTVGFNMR----KITKGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 25 ~vGKtsl~~~~~~--~~~~~~~~------------~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~ 75 (101)
.=|||||+..+.. +.|.+... --.|+.+. .+.+++..++|.||+|+..|--
T Consensus 15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 6699999999875 33443211 11122221 2678899999999999987754
No 358
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.01 E-value=0.0055 Score=38.73 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+|||||+.++..
T Consensus 7 ~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 7 VGYSGSGKTTLLEKLIP 23 (159)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58899999999988774
No 359
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.0045 Score=39.83 Aligned_cols=20 Identities=10% Similarity=-0.037 Sum_probs=17.1
Q ss_pred eEeccCCCcceeeeeccccC
Q psy2967 19 FNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~ 38 (101)
+.+|+||+||||+..++...
T Consensus 4 iilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 34699999999999998865
No 360
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.0083 Score=46.00 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=16.9
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
|++.+ ||+||||||||.+.+.
T Consensus 351 pILcL-VGPPGVGKTSLgkSIA 371 (782)
T COG0466 351 PILCL-VGPPGVGKTSLGKSIA 371 (782)
T ss_pred cEEEE-ECCCCCCchhHHHHHH
Confidence 56555 6999999999987655
No 361
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.95 E-value=0.0045 Score=39.21 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.2
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|++|||||||++.+..
T Consensus 6 i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 6 VVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 459999999999988754
No 362
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.096 Score=37.53 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=39.9
Q ss_pred cceeeeEeccCCCcceeeeeccccCc--CCC---------------------------------CCCCccceEEEEEecC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQ--FSQ---------------------------------DMIPTVGFNMRKITKG 58 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~--~~~---------------------------------~~~~t~~~~~~~~~~~ 58 (101)
-+...+-+|.-.=|||||+-|+..+. ..+ ++--||.+-|+.....
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 34455557888889999999987631 000 0112233333344556
Q ss_pred cEEEEEEeeCCCCccce
Q psy2967 59 NVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 59 ~~~~~i~D~~G~~~~~~ 75 (101)
.-+|.|-||+|++.|-.
T Consensus 85 KRkFIiADTPGHeQYTR 101 (431)
T COG2895 85 KRKFIIADTPGHEQYTR 101 (431)
T ss_pred cceEEEecCCcHHHHhh
Confidence 78899999999998865
No 363
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.91 E-value=0.0043 Score=39.78 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|+|||||++.+...
T Consensus 8 ~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQR 25 (186)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 688999999999998653
No 364
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.90 E-value=0.011 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.9
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|+.|+|||+|++.+...
T Consensus 28 ~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 28 KGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998864
No 365
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.87 E-value=0.0069 Score=39.11 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=18.2
Q ss_pred eeeeEeccCCCcceeeeeccccC
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~ 38 (101)
.+-+.+|++|||||+|++++...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 33344699999999999999764
No 366
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.82 E-value=0.0049 Score=36.60 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=16.3
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
..|++|+|||++++.+...
T Consensus 24 i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 24 LYGPPGTGKTTLARAIANE 42 (151)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3599999999999998854
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.81 E-value=0.0048 Score=37.22 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=15.1
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+.
T Consensus 17 ~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EESTTSSHHHHHHHHTTS
T ss_pred EccCCCccccceeeeccc
Confidence 477899999999988754
No 368
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.79 E-value=0.0074 Score=39.12 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=19.9
Q ss_pred ccccceeeeEeccCCCcceeeeecccc
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
...-|++-+..|.+|+|||+++..+..
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~ 37 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLE 37 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhh
Confidence 345788888889999999999988764
No 369
>PF13173 AAA_14: AAA domain
Probab=94.79 E-value=0.004 Score=37.53 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=16.8
Q ss_pred eccCCCcceeeeeccccCcC
Q psy2967 21 MRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~ 40 (101)
.|+++||||++++++...-.
T Consensus 8 ~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 8 TGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred ECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999986543
No 370
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.78 E-value=0.0068 Score=42.98 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=15.9
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++||||||+++.+.+=+
T Consensus 37 LGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 37 LGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 3889999999999988543
No 371
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.75 E-value=0.0039 Score=33.77 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|.+|+|||++.+.+...
T Consensus 5 ~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988744
No 372
>KOG0468|consensus
Probab=94.75 E-value=0.062 Score=41.40 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=46.5
Q ss_pred eccCCCcceeeeeccccCcCCCC---------CCCc------cceEEEE---------EecCcEEEEEEeeCCCCccce-
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQD---------MIPT------VGFNMRK---------ITKGNVTIKVWDIGGQPRFRS- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~---------~~~t------~~~~~~~---------~~~~~~~~~i~D~~G~~~~~~- 75 (101)
+|.-..|||+|+.-+.....++- |..+ .|+.++. ..++.+.+++.||+|+-.|..
T Consensus 134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE 213 (971)
T KOG0468|consen 134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDE 213 (971)
T ss_pred eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHH
Confidence 48889999999988876433221 1111 1233321 246678999999999988766
Q ss_pred -----------EEEEECCChhhHHHH
Q psy2967 76 -----------IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 -----------i~v~d~~~~~sf~~~ 90 (101)
++++|+.+--.++.-
T Consensus 214 ~ta~l~~sDgvVlvvDv~EGVmlntE 239 (971)
T KOG0468|consen 214 TTASLRLSDGVVLVVDVAEGVMLNTE 239 (971)
T ss_pred HHHHhhhcceEEEEEEcccCceeeHH
Confidence 889998876655443
No 373
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.73 E-value=0.0053 Score=40.97 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++|+|||||++.+-.-+
T Consensus 34 iGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred ECCCCCCHHHHHHHHHCCc
Confidence 4889999999998876543
No 374
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.72 E-value=0.0056 Score=37.14 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=15.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+..
T Consensus 5 ~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAA 21 (139)
T ss_dssp EESSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998774
No 375
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.68 E-value=0.0075 Score=39.98 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++-..+
T Consensus 37 lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 37 LGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EcCCCccHHHHHHHHhc
Confidence 48899999999988664
No 376
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.68 E-value=0.0058 Score=32.75 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=13.7
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
.|+.|+|||||+..+.
T Consensus 29 ~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQ 44 (62)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999997755
No 377
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.67 E-value=0.0046 Score=36.57 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|.+||||||+++.+...
T Consensus 4 ~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999887754
No 378
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.66 E-value=0.028 Score=34.53 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=33.6
Q ss_pred ccCCCcceeeeeccccCcCCCCCCCccceEEEEEecC-------cEEEEEEeeCCC-Cccce------EEEEECCChhhH
Q psy2967 22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKG-------NVTIKVWDIGGQ-PRFRS------IYMVDAADTDKL 87 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~D~~G~-~~~~~------i~v~d~~~~~sf 87 (101)
|.+|+|||++++.+... ++..+.+++.. -.-+.+||-..+ -+++. |+..|=-|+.+-
T Consensus 6 g~PG~GKT~la~~lA~~---------~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 6 GVPGVGKTTLAKALARS---------LGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp S---HHHHHHHHHHHHH---------TT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H
T ss_pred CCCccHHHHHHHHHHHH---------cCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH
Confidence 88999999999887742 12222222211 022345553321 22233 888887777665
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
..-..+++.+.+
T Consensus 77 ktQsAlLeam~E 88 (131)
T PF07726_consen 77 KTQSALLEAMEE 88 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 544455555544
No 379
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.62 E-value=0.0057 Score=39.58 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=16.6
Q ss_pred EeccCCCcceeeeeccccCc
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~ 39 (101)
..|++|+|||+|++.+....
T Consensus 25 l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 25 LYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp EEESTTSSHHHHHHHHHHHC
T ss_pred EEcCCcCCHHHHHHHHHHHh
Confidence 35999999999999888643
No 380
>PRK08233 hypothetical protein; Provisional
Probab=94.58 E-value=0.0087 Score=37.71 Aligned_cols=17 Identities=12% Similarity=-0.077 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+|||||..++..
T Consensus 9 ~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 9 AAVSGGGKTTLTERLTH 25 (182)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 49999999999988764
No 381
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.40 E-value=0.0063 Score=37.33 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=15.9
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|+|||+|++.+...
T Consensus 5 ~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 699999999999998853
No 382
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.39 E-value=0.0075 Score=35.77 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=14.2
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|+|||||++.+.
T Consensus 21 ~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 21 TGDSGIGKTELALELI 36 (107)
T ss_pred EcCCCCCHHHHHHHhh
Confidence 4889999999999876
No 383
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.38 E-value=0.01 Score=38.82 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=16.8
Q ss_pred ceeeeEe-ccCCCcceeeeecccc
Q psy2967 15 PTVGFNM-RKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~v-G~~~vGKtsl~~~~~~ 37 (101)
|++-+++ |++|+|||+|+.+.+.
T Consensus 12 ~~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 12 PMLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred ceEEEEecCCCCcCHHHHHHHHHH
Confidence 4444444 9999999999977553
No 384
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.38 E-value=0.027 Score=34.20 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=24.8
Q ss_pred ccCCCcceeeeeccccCc--CCCCCCCccceEEEEEecCcEEEEEEee
Q psy2967 22 RKITKGNVTIWPVPLSGQ--FSQDMIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
|+-|+|||+|++.+...- ...-.+||...- ..+...+..+..+|.
T Consensus 22 GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~-~~Y~~~~~~l~H~DL 68 (123)
T PF02367_consen 22 GDLGAGKTTFVRGLARALGIDEEVTSPTFSLV-NEYEGGNIPLYHFDL 68 (123)
T ss_dssp ESTTSSHHHHHHHHHHHTT--S----TTTTSE-EEEEETTEEEEEEE-
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEE-EEecCCCceEEEeec
Confidence 899999999999887532 112356765532 223335555555553
No 385
>PLN02200 adenylate kinase family protein
Probab=94.22 E-value=0.017 Score=38.64 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=19.7
Q ss_pred ccceeeeEeccCCCcceeeeecccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
..|++-+.+|.||+|||++..++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3566666779999999999877663
No 386
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.18 E-value=0.01 Score=40.44 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=17.3
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+++|+ -|+||+|||||+..+..
T Consensus 29 a~~iGi-TG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 29 AHVIGI-TGPPGAGKSTLIDALIR 51 (266)
T ss_dssp SEEEEE-EE-TTSSHHHHHHHHHH
T ss_pred ceEEEe-eCCCCCcHHHHHHHHHH
Confidence 456775 49999999999987664
No 387
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.14 E-value=0.007 Score=38.17 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=14.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+++.+..
T Consensus 1 ~G~sGsGKSTla~~la~ 17 (163)
T PRK11545 1 MGVSGSGKSAVASEVAH 17 (163)
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 58899999999986553
No 388
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=94.14 E-value=0.012 Score=42.92 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.1
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+++++ +|.+|+|||||+.+++.
T Consensus 2 kVi~I-vG~sgSGKTTLiekLI~ 23 (452)
T PRK14495 2 RVYGI-IGWKDAGKTGLVERLVA 23 (452)
T ss_pred cEEEE-EecCCCCHHHHHHHHHH
Confidence 44554 58889999999998874
No 389
>PTZ00301 uridine kinase; Provisional
Probab=94.13 E-value=0.011 Score=39.06 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=15.7
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
.++|+ .|++|+|||||.+++.
T Consensus 4 ~iIgI-aG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 4 TVIGI-SGASGSGKSSLSTNIV 24 (210)
T ss_pred EEEEE-ECCCcCCHHHHHHHHH
Confidence 34554 4999999999997553
No 390
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.10 E-value=0.013 Score=37.11 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=16.1
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
.+|++|+|||||++.+...
T Consensus 6 l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EECCCCCCHHHHHHHHHcc
Confidence 3589999999999998763
No 391
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.08 E-value=0.2 Score=33.99 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=38.5
Q ss_pred ceeeeE-eccCCCcceeeeeccccCc--CC---CCCCCccceEEEE---EecCcEEEEEEeeCCCCc
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLSGQ--FS---QDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~~~--~~---~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~ 72 (101)
|+.-+. +|+...|||.|++++.+.. |. .....|.|+-+-. -.+..+.+.+.||.|...
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 444444 4999999999999998642 21 1235666765533 234678999999988755
No 392
>PRK07667 uridine kinase; Provisional
Probab=94.05 E-value=0.011 Score=38.20 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=17.4
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.++|+. |.+|+|||++.+.+..
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~ 39 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH
Confidence 466654 9999999998877654
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.04 E-value=0.0091 Score=40.65 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|||||||++.+..
T Consensus 34 iGpNG~GKSTLLk~l~g 50 (258)
T COG1120 34 LGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 36679999999998775
No 394
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.00 E-value=0.016 Score=39.65 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=17.4
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+-+.+|.+|+||||+.+++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4445569999999999998764
No 395
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.91 E-value=0.012 Score=36.69 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+||||+.+.+..
T Consensus 4 ~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 4 MGVAGSGKSTIASALAH 20 (163)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58899999999887653
No 396
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.90 E-value=0.01 Score=38.75 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 36 ~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 36 VGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.89 E-value=0.015 Score=38.90 Aligned_cols=25 Identities=12% Similarity=-0.152 Sum_probs=19.6
Q ss_pred ccceeeeEeccCCCcceeeeecccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+|+.-+.+|+|||||||+..++..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3566555679999999999988764
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.84 E-value=0.017 Score=37.65 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=16.8
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
|.+-+-||+.||||||.+-++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHH
Confidence 4455567999999999887654
No 399
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.82 E-value=0.011 Score=37.84 Aligned_cols=16 Identities=19% Similarity=0.057 Sum_probs=13.6
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|+.|+|||||++.+.
T Consensus 27 ~G~nG~GKSTLl~~il 42 (176)
T cd03238 27 TGVSGSGKSTLVNEGL 42 (176)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 3778999999998775
No 400
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.82 E-value=0.014 Score=39.18 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.4
Q ss_pred eEeccCCCcceeeeeccccC
Q psy2967 19 FNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~ 38 (101)
+..|++|+|||++++.+...
T Consensus 47 ~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEcCCCCCHHHHHHHHHHh
Confidence 34699999999999988753
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.82 E-value=0.011 Score=37.43 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=15.6
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|+||+|||++..++..
T Consensus 3 ~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 3 FVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999888764
No 402
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.016 Score=37.70 Aligned_cols=20 Identities=15% Similarity=0.018 Sum_probs=17.1
Q ss_pred EeccCCCcceeeeeccccCc
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~ 39 (101)
..|++|||||||++.+....
T Consensus 9 lsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 35999999999999988654
No 403
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.81 E-value=0.011 Score=38.57 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 35 ~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGI 52 (216)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998864
No 404
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.78 E-value=0.0087 Score=35.10 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 4 ~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAK 20 (107)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999764
No 405
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.78 E-value=0.015 Score=39.83 Aligned_cols=21 Identities=10% Similarity=0.128 Sum_probs=15.8
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++++ +|.+|+|||||+.+++.
T Consensus 3 ~i~i-~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 3 VLSI-VGYKATGKTTLVERLVD 23 (274)
T ss_pred EEEE-ECCCCCCHHHHHHHHHH
Confidence 4443 58889999999987663
No 406
>PRK06547 hypothetical protein; Provisional
Probab=93.75 E-value=0.016 Score=37.07 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.3
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
..|.+|+||||+.+.+..
T Consensus 20 i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 20 IDGRSGSGKTTLAGALAA 37 (172)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 349999999999988864
No 407
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.74 E-value=0.011 Score=38.22 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 32 TGKNGAGKTTLAKILAGL 49 (205)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999998864
No 408
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.74 E-value=0.01 Score=38.30 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=15.7
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
.+|++|+|||+|++.+...
T Consensus 10 i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 10 LSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 3589999999999887753
No 409
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.73 E-value=0.011 Score=38.34 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999988854
No 410
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.72 E-value=0.012 Score=39.10 Aligned_cols=18 Identities=11% Similarity=-0.044 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRL 51 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988753
No 411
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.70 E-value=0.016 Score=37.66 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|||||||++.+..
T Consensus 12 ~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 12 AGGSGSGKTTVASTIYE 28 (209)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887653
No 412
>PRK10646 ADP-binding protein; Provisional
Probab=93.65 E-value=0.044 Score=34.54 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=15.1
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+-|+|||+|++.+...
T Consensus 35 GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 35 GDLGAGKTTFSRGFLQA 51 (153)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998753
No 413
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.63 E-value=0.012 Score=39.69 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=16.3
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++|||||||.+.+.+=+
T Consensus 39 vGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 39 VGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EcCCCCCHHHHHHHHhccc
Confidence 5999999999999988643
No 414
>PRK14530 adenylate kinase; Provisional
Probab=93.62 E-value=0.014 Score=38.27 Aligned_cols=18 Identities=11% Similarity=-0.171 Sum_probs=15.2
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|++|+||||+.+++..
T Consensus 8 i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 8 LLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 379999999999988753
No 415
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.61 E-value=0.012 Score=37.62 Aligned_cols=18 Identities=11% Similarity=-0.099 Sum_probs=15.0
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 24 ~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGL 41 (190)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 477899999999988753
No 416
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.57 E-value=0.013 Score=38.30 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988754
No 417
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.56 E-value=0.013 Score=37.98 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=15.1
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|.+|+|||||.+.+...
T Consensus 5 ~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 5 SGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 389999999999887753
No 418
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.013 Score=38.12 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 31 ~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 31 LGPNGAGKTTLMRILATL 48 (211)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999998853
No 419
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.013 Score=38.09 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 32 LGPNGAGKTTTIRMILGI 49 (210)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999999864
No 420
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.013 Score=38.73 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 421
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.52 E-value=0.014 Score=39.87 Aligned_cols=16 Identities=13% Similarity=-0.084 Sum_probs=14.3
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
.|++|||||||++.+.
T Consensus 5 ~G~sGsGKSTl~~~L~ 20 (273)
T cd02026 5 AGDSGCGKSTFLRRLT 20 (273)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998876
No 422
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.49 E-value=0.018 Score=36.06 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|..|+|||+|++++...
T Consensus 6 ~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 6 TGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EECCCCCHHHHHHHHHhc
Confidence 577899999999987754
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.013 Score=38.29 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 36 ~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 424
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.46 E-value=0.016 Score=35.56 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||+.+.+..
T Consensus 5 ~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 5 MGVSGSGKSTVGKALAE 21 (150)
T ss_pred EcCCCCCHHHHHHHHHh
Confidence 58999999999988764
No 425
>PRK14527 adenylate kinase; Provisional
Probab=93.44 E-value=0.02 Score=36.76 Aligned_cols=22 Identities=14% Similarity=-0.157 Sum_probs=17.2
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
|.+-+.+|++|+||||+..++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3444557999999999998876
No 426
>KOG0733|consensus
Probab=93.42 E-value=0.015 Score=44.15 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.8
Q ss_pred cceeeeEe-ccCCCcceeeeeccccC
Q psy2967 14 IPTVGFNM-RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 14 ~~~~g~~v-G~~~vGKtsl~~~~~~~ 38 (101)
.|..|+-+ |+||||||+|.+.+.+.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhh
Confidence 68888776 99999999999999864
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.39 E-value=0.068 Score=38.63 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=13.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
||+.||||||-+.++..
T Consensus 209 VGPTGVGKTTTlAKLAa 225 (407)
T COG1419 209 VGPTGVGKTTTLAKLAA 225 (407)
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999998766553
No 428
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.38 E-value=0.011 Score=36.51 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+||+||+++..++..
T Consensus 2 ~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHH
Confidence 69999999999988775
No 429
>PRK14532 adenylate kinase; Provisional
Probab=93.38 E-value=0.015 Score=37.10 Aligned_cols=18 Identities=11% Similarity=-0.130 Sum_probs=15.4
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|+||+||||+..++..
T Consensus 5 ~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 5 LFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 469999999999988764
No 430
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.37 E-value=0.02 Score=37.33 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++++..
T Consensus 7 ~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 7 AGPVGSGKTALIEALTR 23 (199)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58899999999987664
No 431
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.37 E-value=0.014 Score=37.88 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 32 IGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999999864
No 432
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.015 Score=38.54 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 33 ~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 433
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.34 E-value=0.015 Score=37.90 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 34 ~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988754
No 434
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.32 E-value=0.023 Score=37.38 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=16.9
Q ss_pred eEeccCCCcceeeeeccccCc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~ 39 (101)
|.+|++|+|||||++-+...+
T Consensus 32 fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 32 FLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEECCCCCCHHHHHHHHHhhh
Confidence 446999999999998877543
No 435
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.015 Score=38.11 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 378899999999998854
No 436
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=93.29 E-value=0.019 Score=36.40 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.3
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
.|+.|+|||||+..+.
T Consensus 25 ~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 25 YGPNGSGKSTILEAIR 40 (202)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 3999999999987644
No 437
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.02 Score=38.09 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=16.6
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++|+ .|++|+||||+.+++..
T Consensus 10 iIgI-aG~SgSGKTTva~~l~~ 30 (218)
T COG0572 10 IIGI-AGGSGSGKTTVAKELSE 30 (218)
T ss_pred EEEE-eCCCCCCHHHHHHHHHH
Confidence 4453 49999999999988764
No 438
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.015 Score=36.97 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998753
No 439
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.26 E-value=0.015 Score=37.58 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 30 ~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLL 47 (206)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999999864
No 440
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.25 E-value=0.015 Score=37.77 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999998854
No 441
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.24 E-value=0.016 Score=37.74 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 31 ~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 31 VGPNGAGKSTLLKAILGL 48 (213)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 488899999999988754
No 442
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.23 E-value=0.015 Score=37.77 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988864
No 443
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.21 E-value=0.015 Score=38.25 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=15.8
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|+.|+|||||++-+.+-.
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 3888999999999988643
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.20 E-value=0.014 Score=37.50 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 31 ~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred ECCCCChHHHHHHHHHcC
Confidence 478899999999988854
No 445
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.016 Score=37.75 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988753
No 446
>PRK06217 hypothetical protein; Validated
Probab=93.18 E-value=0.024 Score=36.21 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.3
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+|+||||+.+++..
T Consensus 6 i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 6 ITGASGSGTTTLGAALAE 23 (183)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 358899999999998775
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.18 E-value=0.017 Score=35.15 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|++|+|||+|+..+...
T Consensus 5 ~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 5 FGPTGSGKTTLALQLALN 22 (165)
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 599999999999888653
No 448
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.17 E-value=0.016 Score=37.87 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999999864
No 449
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.16 E-value=0.016 Score=37.94 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 37 ~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 37 VGESGSGKSTLARAILGL 54 (228)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998864
No 450
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.16 E-value=0.017 Score=38.16 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 32 IGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ECCCCCCHHHHHHHHcCC
Confidence 388899999999988854
No 451
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.016 Score=38.21 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 37 ~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 37 IGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 452
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.13 E-value=0.016 Score=37.87 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 37 ~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998864
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.13 E-value=0.021 Score=37.12 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+||||+++.+..
T Consensus 7 ~GptGSGKTTll~~ll~ 23 (198)
T cd01131 7 TGPTGSGKSTTLAAMID 23 (198)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988664
No 454
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.11 E-value=0.017 Score=38.10 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999998864
No 455
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.11 E-value=0.022 Score=37.33 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 19 ~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 477899999999988864
No 456
>KOG2485|consensus
Probab=93.07 E-value=0.028 Score=39.32 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=15.7
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|-||||||||++....
T Consensus 147 mVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 147 MVVGVPNVGKSSLINALRN 165 (335)
T ss_pred EEEcCCCCChHHHHHHHHH
Confidence 4468899999999997664
No 457
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.07 E-value=0.017 Score=39.07 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+..
T Consensus 36 IG~SGaGKSTLLR~lng 52 (258)
T COG3638 36 IGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 37789999999988875
No 458
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.017 Score=38.31 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 459
>PRK03839 putative kinase; Provisional
Probab=93.04 E-value=0.02 Score=36.34 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=14.9
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|.+|+||||+.+++..
T Consensus 5 l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 5 ITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 358899999999887764
No 460
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.02 E-value=0.013 Score=36.58 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=13.7
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|.+++|||||++.+...
T Consensus 5 ~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 5 TGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp E--TTSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHc
Confidence 499999999999988754
No 461
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.01 E-value=0.018 Score=38.11 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 377899999999998864
No 462
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.99 E-value=0.018 Score=37.56 Aligned_cols=17 Identities=12% Similarity=-0.077 Sum_probs=15.0
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|+|||||++-+.+-
T Consensus 38 G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 38 GPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCCCCCHHHHHHHHhCC
Confidence 88899999999998854
No 463
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.99 E-value=0.017 Score=37.40 Aligned_cols=17 Identities=18% Similarity=0.048 Sum_probs=15.1
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|+|||||++-+.+-
T Consensus 33 G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 33 GPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCCCCCHHHHHHHHhCC
Confidence 88899999999998864
No 464
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.98 E-value=0.02 Score=36.19 Aligned_cols=19 Identities=16% Similarity=-0.134 Sum_probs=15.9
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
..|+||+|||+|..+|...
T Consensus 4 i~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 4599999999999887653
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.97 E-value=0.016 Score=37.16 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+||||+++.+.+
T Consensus 31 ~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 31 SGGTGSGKTTLLNALLA 47 (186)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 48999999999988774
No 466
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.021 Score=38.49 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=20.7
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccc
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVG 49 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~ 49 (101)
+|+.|+|||||.+.+.+.+ .|..|-|
T Consensus 36 MGPNGsGKSTLa~~i~G~p---~Y~Vt~G 61 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHP---KYEVTEG 61 (251)
T ss_pred ECCCCCCHHHHHHHHhCCC---CceEecc
Confidence 3777999999999999774 5666655
No 467
>KOG0458|consensus
Probab=92.94 E-value=0.28 Score=37.07 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.0
Q ss_pred EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 55 ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 55 ~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
++-+...+.+.|.+|+..|-. ++|+|++-
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 556778999999999877765 88888653
No 468
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.94 E-value=0.018 Score=38.76 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 33 ~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 469
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.94 E-value=0.018 Score=38.08 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 41 ~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999998864
No 470
>KOG1533|consensus
Probab=92.84 E-value=0.061 Score=36.53 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=14.3
Q ss_pred eeeEeccCCCcceeeeec
Q psy2967 17 VGFNMRKITKGNVTIWPV 34 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~ 34 (101)
-.+.+|+||+||||...-
T Consensus 4 gqvVIGPPgSGKsTYc~g 21 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNG 21 (290)
T ss_pred ceEEEcCCCCCccchhhh
Confidence 345679999999998754
No 471
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.84 E-value=0.02 Score=36.50 Aligned_cols=18 Identities=11% Similarity=-0.186 Sum_probs=15.4
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+|+|||++..++..
T Consensus 4 i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 4 LLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 469999999999988764
No 472
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.83 E-value=0.02 Score=37.73 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=14.8
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|+|||||++-+.+-
T Consensus 33 G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 33 GRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCCCCHHHHHHHHhCC
Confidence 77899999999988854
No 473
>KOG0082|consensus
Probab=92.83 E-value=0.37 Score=34.38 Aligned_cols=41 Identities=27% Similarity=0.504 Sum_probs=32.0
Q ss_pred CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
..||.|+.-..+..++..+.++|.+||..-|. |||.++++.
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY 231 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY 231 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence 45677777677888999999999999865444 888887754
No 474
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.83 E-value=0.066 Score=36.24 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
||+.|+||||++|-+.+
T Consensus 36 IGPNGAGKTTlfNlitG 52 (250)
T COG0411 36 IGPNGAGKTTLFNLITG 52 (250)
T ss_pred ECCCCCCceeeeeeecc
Confidence 47779999999998874
No 475
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.83 E-value=0.02 Score=37.15 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=15.8
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|+.|+|||||++-+.+-.
T Consensus 39 ~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 39 LGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCCCCHHHHHHHhcccC
Confidence 3888999999999988653
No 476
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.77 E-value=0.03 Score=38.35 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
||.+||||||+-+-++.
T Consensus 45 VGESG~GKSTlgr~i~~ 61 (268)
T COG4608 45 VGESGCGKSTLGRLILG 61 (268)
T ss_pred EecCCCCHHHHHHHHHc
Confidence 59999999999888774
No 477
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.77 E-value=0.027 Score=35.37 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=15.1
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|+|||||++-+.+-
T Consensus 33 G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 33 GENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCCCCHHHHHHHHhCC
Confidence 88899999999988864
No 478
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.74 E-value=0.02 Score=37.33 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 29 ~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 29 FGASGAGKSTLLRCIAGL 46 (214)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999988754
No 479
>PF13479 AAA_24: AAA domain
Probab=92.73 E-value=0.04 Score=36.19 Aligned_cols=19 Identities=11% Similarity=-0.108 Sum_probs=15.5
Q ss_pred eeeEeccCCCcceeeeecc
Q psy2967 17 VGFNMRKITKGNVTIWPVP 35 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~ 35 (101)
.-+..|++|+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 3344599999999999888
No 480
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.73 E-value=0.027 Score=36.28 Aligned_cols=18 Identities=6% Similarity=-0.121 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGI 49 (195)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999998864
No 481
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.73 E-value=0.021 Score=36.45 Aligned_cols=18 Identities=6% Similarity=0.015 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 32 AGLVGNGQTELAEALFGL 49 (182)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 377899999999998864
No 482
>PRK14531 adenylate kinase; Provisional
Probab=92.71 E-value=0.027 Score=36.01 Aligned_cols=19 Identities=11% Similarity=-0.125 Sum_probs=15.5
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|+||+||||+..++..
T Consensus 6 ~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 6 LFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4469999999999887754
No 483
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=92.70 E-value=0.018 Score=41.00 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=15.8
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|+|||||++.+...
T Consensus 84 ~GPPGsGKStla~~La~~ 101 (361)
T smart00763 84 LGPVGGGKSSLVECLKRG 101 (361)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998753
No 484
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.68 E-value=0.038 Score=37.35 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=17.8
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccc
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVG 49 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~ 49 (101)
||..|+|||||++-+.+ .+.||.|
T Consensus 59 iG~NGaGKSTLlkliaG-----i~~Pt~G 82 (249)
T COG1134 59 IGHNGAGKSTLLKLIAG-----IYKPTSG 82 (249)
T ss_pred ECCCCCcHHHHHHHHhC-----ccCCCCc
Confidence 36679999999988874 3456655
No 485
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.65 E-value=0.68 Score=33.11 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=36.3
Q ss_pred CCccceEEEEEec-CcEEEEEEeeCCCCccce------------EEEEECCCh----------hhHHHHHHHHHHHHH
Q psy2967 45 IPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAADT----------DKLEASRNELHALIE 99 (101)
Q Consensus 45 ~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~~~----------~sf~~~~~~~~~i~~ 99 (101)
.+|.|+.-..+.. ++..+.++|.+||..-|. |||+++++. .++.+....+.++.+
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh
Confidence 4566666556677 899999999999975554 888887643 335555555555543
No 486
>PRK15453 phosphoribulokinase; Provisional
Probab=92.65 E-value=0.03 Score=38.73 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=17.6
Q ss_pred cceeeeEeccCCCcceeeeeccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
.|++++ .|.+||||||+.+.+.
T Consensus 5 ~piI~I-tG~SGsGKTTva~~l~ 26 (290)
T PRK15453 5 HPIIAV-TGSSGAGTTTVKRAFE 26 (290)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHH
Confidence 466664 6999999999988765
No 487
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.021 Score=37.93 Aligned_cols=17 Identities=12% Similarity=-0.079 Sum_probs=15.2
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|+|||||++-+.+-
T Consensus 35 G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 35 GPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCCCCHHHHHHHHhCC
Confidence 88899999999998864
No 488
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.021 Score=37.52 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 35 ~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 35 VGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999999864
No 489
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.61 E-value=0.021 Score=37.78 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 490
>PRK06696 uridine kinase; Validated
Probab=92.60 E-value=0.03 Score=36.96 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+|||||.+.+..
T Consensus 28 ~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 28 DGITASGKTTFADELAE 44 (223)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999888764
No 491
>PRK10908 cell division protein FtsE; Provisional
Probab=92.58 E-value=0.022 Score=37.37 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 34 ~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGI 51 (222)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 492
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.58 E-value=0.031 Score=39.75 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.2
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++++++ +|.+|+|||||+.+++.
T Consensus 205 ~~~~~~-~g~~~~GKtt~~~~l~~ 227 (366)
T PRK14489 205 PPLLGV-VGYSGTGKTTLLEKLIP 227 (366)
T ss_pred ccEEEE-ecCCCCCHHHHHHHHHH
Confidence 555654 69999999999988774
No 493
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.58 E-value=0.03 Score=38.70 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=17.2
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
..++++ +|.+|+|||||+..+..
T Consensus 34 ~~~i~i-~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 34 AHRVGI-TGTPGAGKSTLLEALGM 56 (300)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHH
Confidence 445554 39999999999988553
No 494
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.58 E-value=0.022 Score=38.53 Aligned_cols=18 Identities=11% Similarity=0.040 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 44 ~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999988854
No 495
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.022 Score=36.62 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+.
T Consensus 39 ~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 39 MGESGAGKTTLLDVLAGR 56 (192)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998854
No 496
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.56 E-value=0.022 Score=38.08 Aligned_cols=18 Identities=17% Similarity=-0.077 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 36 ~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 488899999999988864
No 497
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.56 E-value=0.022 Score=36.18 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=15.2
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|+|||||++.+.+-
T Consensus 35 G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 35 GRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCCCCHHHHHHHHhcc
Confidence 88899999999998864
No 498
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=92.55 E-value=0.051 Score=34.11 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=15.1
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+-|+|||||++-+..+
T Consensus 32 GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 32 GDLGAGKTTLVRGIAKG 48 (149)
T ss_pred cCCcCChHHHHHHHHHH
Confidence 99999999999988753
No 499
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.55 E-value=0.022 Score=38.01 Aligned_cols=18 Identities=22% Similarity=0.040 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 35 ~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 388899999999988854
No 500
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.51 E-value=0.023 Score=38.90 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 43 ~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999999854
Done!