Query psy2967
Match_columns 101
No_of_seqs 150 out of 1176
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 22:09:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 1.3E-23 4.5E-28 137.1 5.6 81 19-99 17-113 (216)
2 4bas_A ADP-ribosylation factor 99.8 2.2E-19 7.7E-24 113.7 8.7 81 19-99 21-114 (199)
3 3c5c_A RAS-like protein 12; GD 99.8 5.4E-19 1.8E-23 111.9 7.6 81 19-99 25-119 (187)
4 1zd9_A ADP-ribosylation factor 99.8 7.5E-19 2.6E-23 111.1 7.4 80 20-99 27-118 (188)
5 3q3j_B RHO-related GTP-binding 99.8 6.3E-19 2.1E-23 113.9 7.1 81 20-100 32-128 (214)
6 2x77_A ADP-ribosylation factor 99.8 5.5E-19 1.9E-23 111.5 6.5 81 18-99 25-117 (189)
7 1ek0_A Protein (GTP-binding pr 99.8 1.4E-18 4.9E-23 107.0 7.9 80 21-100 9-104 (170)
8 1r8s_A ADP-ribosylation factor 99.8 6.5E-19 2.2E-23 108.4 5.8 79 20-99 5-95 (164)
9 1ksh_A ARF-like protein 2; sma 99.8 1.7E-18 5.9E-23 108.8 7.8 80 19-99 22-113 (186)
10 2h57_A ADP-ribosylation factor 99.8 3.2E-18 1.1E-22 108.1 8.8 81 20-100 26-119 (190)
11 2iwr_A Centaurin gamma 1; ANK 99.8 1.1E-18 3.9E-23 108.9 6.5 82 16-98 7-99 (178)
12 3ihw_A Centg3; RAS, centaurin, 99.8 1.6E-18 5.4E-23 109.6 7.1 86 14-99 18-113 (184)
13 3t5g_A GTP-binding protein RHE 99.8 2.6E-18 9E-23 107.4 8.0 81 20-100 11-106 (181)
14 1m7b_A RND3/RHOE small GTP-bin 99.8 2.1E-18 7.2E-23 108.6 7.6 81 19-99 11-107 (184)
15 1c1y_A RAS-related protein RAP 99.8 2.2E-18 7.6E-23 106.0 7.4 80 20-99 8-102 (167)
16 1moz_A ARL1, ADP-ribosylation 99.8 5.3E-19 1.8E-23 110.7 4.6 80 19-99 22-113 (183)
17 2fu5_C RAS-related protein RAB 99.8 1.6E-18 5.5E-23 108.6 6.7 82 19-100 12-109 (183)
18 3kkq_A RAS-related protein M-R 99.8 2.2E-18 7.4E-23 108.0 7.3 87 13-99 15-117 (183)
19 1f6b_A SAR1; gtpases, N-termin 99.8 1.6E-18 5.5E-23 110.7 6.6 79 20-99 30-120 (198)
20 1fzq_A ADP-ribosylation factor 99.8 1.5E-18 5.2E-23 109.3 6.3 81 18-99 19-111 (181)
21 1upt_A ARL1, ADP-ribosylation 99.7 5.4E-18 1.9E-22 104.8 8.0 80 19-99 11-102 (171)
22 1zj6_A ADP-ribosylation factor 99.7 1.3E-18 4.6E-23 109.6 5.1 80 19-99 20-111 (187)
23 1x3s_A RAS-related protein RAB 99.7 3.2E-18 1.1E-22 107.9 6.9 86 14-99 13-115 (195)
24 1z08_A RAS-related protein RAB 99.7 5.1E-18 1.7E-22 104.8 7.6 81 19-99 10-106 (170)
25 1gwn_A RHO-related GTP-binding 99.7 4E-18 1.4E-22 109.6 7.3 82 18-99 31-128 (205)
26 1m2o_B GTP-binding protein SAR 99.7 5E-18 1.7E-22 107.7 7.6 79 20-99 28-118 (190)
27 1r2q_A RAS-related protein RAB 99.7 6.5E-18 2.2E-22 104.1 7.8 82 19-100 10-107 (170)
28 2b6h_A ADP-ribosylation factor 99.7 3.2E-18 1.1E-22 108.8 6.3 80 19-99 33-124 (192)
29 1u8z_A RAS-related protein RAL 99.7 5.7E-18 2E-22 104.0 7.3 80 20-99 9-103 (168)
30 2h17_A ADP-ribosylation factor 99.7 2.3E-18 8E-23 108.1 5.5 80 19-99 25-116 (181)
31 3reg_A RHO-like small GTPase; 99.7 5.7E-18 1.9E-22 107.3 7.3 83 17-99 25-123 (194)
32 2ew1_A RAS-related protein RAB 99.7 5.6E-18 1.9E-22 108.7 7.2 81 19-99 30-126 (201)
33 2fn4_A P23, RAS-related protei 99.7 8.9E-18 3E-22 104.5 7.9 80 20-99 14-108 (181)
34 2j0v_A RAC-like GTP-binding pr 99.7 6.2E-18 2.1E-22 108.4 7.3 81 19-99 13-109 (212)
35 2y8e_A RAB-protein 6, GH09086P 99.7 7.4E-18 2.5E-22 104.7 7.4 81 19-99 18-114 (179)
36 2hxs_A RAB-26, RAS-related pro 99.7 2.3E-18 7.8E-23 107.2 5.0 81 19-99 10-107 (178)
37 2bme_A RAB4A, RAS-related prot 99.7 7.3E-18 2.5E-22 105.7 7.2 81 19-99 14-110 (186)
38 2hup_A RAS-related protein RAB 99.7 2.2E-18 7.4E-23 110.3 4.8 81 19-99 33-129 (201)
39 3tw8_B RAS-related protein RAB 99.7 1.1E-17 3.8E-22 104.1 7.8 81 20-100 14-110 (181)
40 3oes_A GTPase rhebl1; small GT 99.7 1.1E-17 3.7E-22 106.7 7.8 79 21-99 30-123 (201)
41 2q3h_A RAS homolog gene family 99.7 6.8E-18 2.3E-22 107.3 6.8 82 19-100 24-121 (201)
42 2fg5_A RAB-22B, RAS-related pr 99.7 1.3E-17 4.6E-22 105.6 8.0 80 20-99 28-123 (192)
43 1z06_A RAS-related protein RAB 99.7 4.3E-18 1.5E-22 107.5 5.5 82 19-100 24-122 (189)
44 1kao_A RAP2A; GTP-binding prot 99.7 1.4E-17 4.7E-22 102.2 7.5 81 20-100 8-103 (167)
45 2atx_A Small GTP binding prote 99.7 7.3E-18 2.5E-22 106.6 6.5 81 20-100 23-119 (194)
46 1z0j_A RAB-22, RAS-related pro 99.7 1.6E-17 5.5E-22 102.4 7.8 80 20-99 11-106 (170)
47 2bov_A RAla, RAS-related prote 99.7 1.3E-17 4.5E-22 106.0 7.5 81 20-100 19-114 (206)
48 1z2a_A RAS-related protein RAB 99.7 6.7E-18 2.3E-22 103.9 5.8 81 19-99 9-105 (168)
49 2a9k_A RAS-related protein RAL 99.7 1.6E-17 5.3E-22 103.9 7.5 86 14-99 16-117 (187)
50 1zbd_A Rabphilin-3A; G protein 99.7 1.7E-17 5.9E-22 105.6 7.7 81 19-99 12-108 (203)
51 2efe_B Small GTP-binding prote 99.7 1.2E-17 4.2E-22 104.1 6.8 83 18-100 15-113 (181)
52 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.1E-17 3.8E-22 104.0 6.6 81 19-99 11-107 (177)
53 3tkl_A RAS-related protein RAB 99.7 1.5E-17 5.2E-22 105.0 7.3 82 18-99 19-116 (196)
54 2g6b_A RAS-related protein RAB 99.7 1.7E-17 5.9E-22 103.4 7.3 82 18-99 13-111 (180)
55 1g16_A RAS-related protein SEC 99.7 7.4E-18 2.5E-22 103.9 5.6 82 19-100 7-104 (170)
56 2bcg_Y Protein YP2, GTP-bindin 99.7 1.3E-17 4.3E-22 106.5 6.8 81 19-99 12-108 (206)
57 3gj0_A GTP-binding nuclear pro 99.7 7.9E-18 2.7E-22 108.7 5.8 85 16-100 16-116 (221)
58 2oil_A CATX-8, RAS-related pro 99.7 1.9E-17 6.5E-22 104.6 7.4 81 19-99 29-125 (193)
59 2a5j_A RAS-related protein RAB 99.7 9.4E-18 3.2E-22 106.1 5.9 81 19-99 25-121 (191)
60 2gf9_A RAS-related protein RAB 99.7 1.7E-17 5.9E-22 104.7 7.1 80 20-99 27-122 (189)
61 1vg8_A RAS-related protein RAB 99.7 2.4E-17 8.1E-22 105.0 7.6 81 19-99 12-108 (207)
62 3bc1_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 102.9 7.9 81 19-99 15-121 (195)
63 3clv_A RAB5 protein, putative; 99.7 3.9E-17 1.3E-21 103.0 8.2 82 19-100 11-145 (208)
64 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.9E-17 6.6E-22 103.5 6.7 81 19-99 9-105 (186)
65 2il1_A RAB12; G-protein, GDP, 99.7 1.8E-17 6.2E-22 105.1 6.4 80 20-99 31-126 (192)
66 4dsu_A GTPase KRAS, isoform 2B 99.7 3.3E-17 1.1E-21 102.7 7.5 81 19-99 8-103 (189)
67 2yc2_C IFT27, small RAB-relate 99.7 1.7E-17 5.8E-22 105.5 6.3 81 20-100 25-125 (208)
68 1z0f_A RAB14, member RAS oncog 99.7 1.7E-17 5.7E-22 103.1 6.1 80 20-99 20-115 (179)
69 3cpj_B GTP-binding protein YPT 99.7 1.3E-17 4.4E-22 108.0 5.7 81 19-99 17-113 (223)
70 2j1l_A RHO-related GTP-binding 99.7 1.9E-17 6.5E-22 106.7 6.4 81 19-99 38-134 (214)
71 2p5s_A RAS and EF-hand domain 99.7 1.2E-17 4E-22 106.4 5.3 81 19-99 32-128 (199)
72 1ky3_A GTP-binding protein YPT 99.7 1.4E-17 4.9E-22 103.6 5.4 81 19-99 12-109 (182)
73 2erx_A GTP-binding protein DI- 99.7 2.8E-17 9.6E-22 101.4 6.5 80 20-99 8-102 (172)
74 2atv_A RERG, RAS-like estrogen 99.7 3.9E-17 1.3E-21 103.6 7.1 80 19-99 32-126 (196)
75 3bwd_D RAC-like GTP-binding pr 99.7 6.1E-18 2.1E-22 105.6 3.1 81 19-99 12-108 (182)
76 3q72_A GTP-binding protein RAD 99.7 2.8E-17 9.4E-22 101.3 5.9 79 20-99 7-100 (166)
77 4gzl_A RAS-related C3 botulinu 99.7 5.9E-17 2E-21 103.8 7.4 81 19-99 34-130 (204)
78 3cbq_A GTP-binding protein REM 99.7 2.1E-17 7E-22 105.4 5.2 81 19-99 27-124 (195)
79 2ce2_X GTPase HRAS; signaling 99.7 7.9E-17 2.7E-21 98.6 7.6 81 19-99 7-102 (166)
80 3cph_A RAS-related protein SEC 99.7 4.1E-17 1.4E-21 104.3 6.3 81 19-99 24-120 (213)
81 2fv8_A H6, RHO-related GTP-bin 99.7 5E-17 1.7E-21 104.1 6.5 81 19-99 29-125 (207)
82 3l0i_B RAS-related protein RAB 99.7 1.6E-17 5.6E-22 105.7 4.1 81 19-99 37-133 (199)
83 2o52_A RAS-related protein RAB 99.7 1.5E-17 5E-22 106.2 3.8 81 19-99 29-125 (200)
84 4djt_A GTP-binding nuclear pro 99.7 8.8E-17 3E-21 103.4 7.5 83 17-99 13-112 (218)
85 2gco_A H9, RHO-related GTP-bin 99.7 4.1E-17 1.4E-21 104.1 5.8 81 19-99 29-125 (201)
86 3con_A GTPase NRAS; structural 99.7 1.3E-16 4.3E-21 100.5 7.6 81 19-99 25-120 (190)
87 3dz8_A RAS-related protein RAB 99.7 6E-18 2.1E-22 107.0 1.5 81 19-99 27-123 (191)
88 2zej_A Dardarin, leucine-rich 99.7 2.1E-17 7.3E-22 104.2 4.0 80 20-99 7-108 (184)
89 3q85_A GTP-binding protein REM 99.7 5.4E-17 1.9E-21 100.2 5.5 81 20-100 7-104 (169)
90 2gf0_A GTP-binding protein DI- 99.7 6.8E-17 2.3E-21 102.2 5.7 81 19-99 12-107 (199)
91 3o47_A ADP-ribosylation factor 99.7 8E-17 2.7E-21 110.5 6.2 80 19-99 169-260 (329)
92 3lvq_E ARF-GAP with SH3 domain 99.7 1.8E-16 6.1E-21 113.3 8.1 79 20-99 327-417 (497)
93 3r7w_B Gtpase2, GTP-binding pr 99.7 2.1E-17 7.3E-22 113.5 2.6 64 20-84 4-85 (331)
94 2f7s_A C25KG, RAS-related prot 99.7 2.2E-17 7.6E-22 106.1 2.5 80 19-98 29-134 (217)
95 1oix_A RAS-related protein RAB 99.7 3.4E-16 1.2E-20 99.3 7.7 80 20-99 34-129 (191)
96 2nzj_A GTP-binding protein REM 99.6 2E-16 6.9E-21 98.0 5.4 79 20-99 9-105 (175)
97 2f9l_A RAB11B, member RAS onco 99.6 3.3E-16 1.1E-20 99.8 6.4 80 20-99 10-105 (199)
98 3t1o_A Gliding protein MGLA; G 99.6 1.2E-16 4.1E-21 100.6 3.6 78 19-97 18-129 (198)
99 2wkq_A NPH1-1, RAS-related C3 99.6 8.5E-16 2.9E-20 103.9 7.3 81 19-99 159-255 (332)
100 3r7w_A Gtpase1, GTP-binding pr 99.6 7.2E-16 2.5E-20 104.8 6.9 78 20-97 8-106 (307)
101 3th5_A RAS-related C3 botulinu 99.4 2.9E-17 1E-21 104.8 0.0 80 20-99 35-130 (204)
102 2g3y_A GTP-binding protein GEM 99.6 7.3E-16 2.5E-20 99.9 6.0 84 15-99 36-139 (211)
103 2cjw_A GTP-binding protein GEM 99.6 4.1E-15 1.4E-19 94.5 6.2 79 20-99 11-108 (192)
104 2fh5_B SR-beta, signal recogni 99.6 7.7E-15 2.6E-19 94.0 6.3 79 19-98 11-106 (214)
105 2ged_A SR-beta, signal recogni 99.5 5.4E-15 1.8E-19 93.2 2.9 75 20-99 53-147 (193)
106 1nrj_B SR-beta, signal recogni 99.5 5.9E-15 2E-19 94.8 1.8 75 20-99 17-111 (218)
107 3llu_A RAS-related GTP-binding 99.5 2.1E-14 7.1E-19 91.1 3.8 76 20-98 25-124 (196)
108 2lkc_A Translation initiation 99.5 4.8E-14 1.7E-18 87.5 4.8 71 20-90 13-100 (178)
109 2wji_A Ferrous iron transport 99.4 5.8E-13 2E-17 82.4 7.8 76 20-98 8-105 (165)
110 2gj8_A MNME, tRNA modification 99.4 2.8E-13 9.4E-18 84.6 5.0 79 20-99 9-110 (172)
111 2wjg_A FEOB, ferrous iron tran 99.4 5E-13 1.7E-17 83.7 5.9 77 20-99 12-110 (188)
112 3c5h_A Glucocorticoid receptor 99.4 1.2E-13 4.1E-18 91.5 2.6 85 15-99 18-192 (255)
113 2qu8_A Putative nucleolar GTP- 99.4 5.8E-13 2E-17 86.3 5.6 80 20-99 34-138 (228)
114 3dpu_A RAB family protein; roc 99.4 2.9E-13 9.9E-18 97.8 4.3 77 20-99 46-146 (535)
115 2cxx_A Probable GTP-binding pr 99.4 6.7E-14 2.3E-18 87.6 0.4 74 20-95 6-104 (190)
116 3iby_A Ferrous iron transport 99.3 1.8E-12 6.1E-17 86.2 4.3 75 21-95 7-107 (256)
117 3iev_A GTP-binding protein ERA 99.3 1.2E-11 3.9E-16 84.1 7.5 78 21-98 16-119 (308)
118 2dyk_A GTP-binding protein; GT 99.3 2.5E-12 8.5E-17 78.4 3.7 68 20-87 6-95 (161)
119 3a1s_A Iron(II) transport prot 99.2 9.5E-12 3.3E-16 82.7 5.6 76 20-98 10-107 (258)
120 3lxx_A GTPase IMAP family memb 99.2 7.3E-12 2.5E-16 81.8 4.9 51 20-70 34-88 (239)
121 3i8s_A Ferrous iron transport 99.2 9.1E-12 3.1E-16 83.3 5.2 76 21-96 9-110 (274)
122 1svi_A GTP-binding protein YSX 99.2 1.5E-12 5.2E-17 81.9 0.9 70 20-90 28-124 (195)
123 3k53_A Ferrous iron transport 99.2 1.7E-11 5.7E-16 81.7 5.3 66 21-86 9-96 (271)
124 3def_A T7I23.11 protein; chlor 99.2 4.4E-11 1.5E-15 79.4 6.9 80 19-99 40-144 (262)
125 3b1v_A Ferrous iron uptake tra 99.2 2.3E-11 8E-16 81.5 5.0 74 21-98 9-104 (272)
126 1wf3_A GTP-binding protein; GT 99.2 6E-11 2E-15 80.5 7.0 74 21-96 13-109 (301)
127 1lnz_A SPO0B-associated GTP-bi 99.2 1.2E-11 4E-16 85.4 3.4 79 21-99 164-267 (342)
128 1mky_A Probable GTP-binding pr 99.2 4.9E-11 1.7E-15 84.4 6.0 68 21-88 7-98 (439)
129 2e87_A Hypothetical protein PH 99.1 1.7E-10 5.9E-15 79.6 8.2 80 20-99 172-276 (357)
130 3pqc_A Probable GTP-binding pr 99.1 1.6E-11 5.5E-16 76.9 2.5 76 20-96 28-131 (195)
131 1h65_A Chloroplast outer envel 99.1 2.1E-10 7.2E-15 76.3 7.4 79 19-98 43-146 (270)
132 3gee_A MNME, tRNA modification 99.1 4E-11 1.4E-15 85.9 3.9 70 20-89 238-330 (476)
133 1jny_A EF-1-alpha, elongation 99.1 8.2E-12 2.8E-16 88.4 0.2 77 21-98 12-133 (435)
134 4fid_A G protein alpha subunit 99.1 1E-10 3.5E-15 80.7 5.5 66 34-99 128-222 (340)
135 2hjg_A GTP-binding protein ENG 99.1 2.1E-11 7.1E-16 86.2 1.5 78 20-98 180-283 (436)
136 2xtp_A GTPase IMAP family memb 99.1 4.2E-10 1.4E-14 74.1 7.6 78 20-97 27-132 (260)
137 4dhe_A Probable GTP-binding pr 99.0 1E-10 3.4E-15 75.0 3.5 51 20-70 34-89 (223)
138 2qtf_A Protein HFLX, GTP-bindi 99.0 2.6E-10 8.8E-15 79.3 5.3 80 14-94 179-282 (364)
139 2hjg_A GTP-binding protein ENG 99.0 7.3E-11 2.5E-15 83.4 1.4 76 20-98 8-107 (436)
140 1azs_C GS-alpha; complex (lyas 99.0 1.2E-09 4E-14 76.9 7.2 54 46-99 203-278 (402)
141 1jal_A YCHF protein; nucleotid 99.0 2.8E-10 9.4E-15 79.2 3.4 77 21-97 8-132 (363)
142 3ohm_A Guanine nucleotide-bind 99.0 9.9E-10 3.4E-14 75.5 6.1 56 44-99 151-228 (327)
143 1xzp_A Probable tRNA modificat 99.0 2.6E-10 9E-15 81.8 3.3 71 20-90 248-342 (482)
144 1g7s_A Translation initiation 99.0 4.4E-10 1.5E-14 82.4 4.4 77 14-91 5-116 (594)
145 3lxw_A GTPase IMAP family memb 99.0 2E-09 7E-14 70.9 7.0 51 20-70 26-80 (247)
146 1cip_A Protein (guanine nucleo 98.9 2E-09 7E-14 74.5 6.7 56 44-99 177-254 (353)
147 2elf_A Protein translation elo 98.9 4.4E-10 1.5E-14 78.2 3.1 68 21-96 27-106 (370)
148 1dar_A EF-G, elongation factor 98.9 1.3E-09 4.3E-14 81.2 5.6 75 21-95 18-124 (691)
149 1zcb_A G alpha I/13; GTP-bindi 98.9 4.3E-09 1.5E-13 73.1 7.5 56 44-99 185-262 (362)
150 4dcu_A GTP-binding protein ENG 98.9 1.9E-10 6.5E-15 81.7 0.4 81 14-98 23-127 (456)
151 3qq5_A Small GTP-binding prote 98.9 1.6E-09 5.4E-14 76.7 4.6 75 21-98 40-137 (423)
152 1kk1_A EIF2gamma; initiation o 98.9 1.8E-09 6.1E-14 75.7 4.3 73 21-93 16-132 (410)
153 3geh_A MNME, tRNA modification 98.9 3.6E-10 1.2E-14 80.7 0.7 77 20-97 229-328 (462)
154 3p26_A Elongation factor 1 alp 98.8 9.2E-10 3.1E-14 78.8 2.4 72 16-87 33-150 (483)
155 1s0u_A EIF-2-gamma, translatio 98.8 2.1E-09 7E-14 75.4 4.0 74 20-93 13-130 (408)
156 1pui_A ENGB, probable GTP-bind 98.8 1.3E-09 4.3E-14 69.3 2.6 67 21-88 32-125 (210)
157 1r5b_A Eukaryotic peptide chai 98.8 3.7E-10 1.2E-14 80.6 0.1 64 21-84 49-157 (467)
158 1u0l_A Probable GTPase ENGC; p 98.8 1E-08 3.4E-13 69.4 7.1 67 29-98 31-112 (301)
159 3sjy_A Translation initiation 98.8 6.3E-09 2.1E-13 72.9 6.3 78 20-97 13-124 (403)
160 1ega_A Protein (GTP-binding pr 98.8 3.7E-09 1.3E-13 71.6 4.9 51 21-71 14-67 (301)
161 3izy_P Translation initiation 98.8 1.2E-10 4E-15 84.6 -2.8 72 20-91 9-95 (537)
162 1wb1_A Translation elongation 98.8 1.2E-09 4.1E-14 78.3 2.2 71 20-90 24-118 (482)
163 1zo1_I IF2, translation initia 98.8 6.8E-10 2.3E-14 80.0 0.3 76 14-90 4-96 (501)
164 2c78_A Elongation factor TU-A; 98.8 7.1E-09 2.4E-13 72.6 5.5 76 20-96 16-122 (405)
165 1zun_B Sulfate adenylate trans 98.8 8.1E-09 2.8E-13 73.0 5.6 65 21-85 30-141 (434)
166 4dcu_A GTP-binding protein ENG 98.8 2.6E-09 8.8E-14 75.9 2.7 67 20-86 200-292 (456)
167 2xex_A Elongation factor G; GT 98.8 9.8E-09 3.3E-13 76.4 5.9 74 21-94 16-121 (693)
168 3tr5_A RF-3, peptide chain rel 98.8 2.4E-09 8.2E-14 77.6 2.3 79 14-93 13-127 (528)
169 1d2e_A Elongation factor TU (E 98.8 5.3E-09 1.8E-13 73.2 4.0 67 21-87 9-105 (397)
170 3cb4_D GTP-binding protein LEP 98.8 8.7E-09 3E-13 75.6 5.3 77 21-97 10-120 (599)
171 1wxq_A GTP-binding protein; st 98.8 6.8E-09 2.3E-13 72.9 4.5 77 21-97 6-138 (397)
172 2aka_B Dynamin-1; fusion prote 98.8 1.3E-08 4.6E-13 67.9 5.7 22 20-41 31-52 (299)
173 1n0u_A EF-2, elongation factor 98.8 4.1E-09 1.4E-13 79.9 3.5 75 21-95 25-145 (842)
174 3j2k_7 ERF3, eukaryotic polype 98.7 7.3E-09 2.5E-13 73.4 4.5 64 21-84 23-131 (439)
175 2xtz_A Guanine nucleotide-bind 98.7 2.6E-08 8.9E-13 69.0 6.6 42 58-99 181-244 (354)
176 3t5d_A Septin-7; GTP-binding p 98.7 1.8E-08 6.1E-13 67.1 5.4 68 20-94 13-92 (274)
177 2ywe_A GTP-binding protein LEP 98.7 1.1E-08 3.7E-13 75.1 4.5 77 21-97 12-122 (600)
178 1f60_A Elongation factor EEF1A 98.7 8.1E-09 2.8E-13 73.5 3.5 65 20-84 12-121 (458)
179 1mky_A Probable GTP-binding pr 98.7 2.6E-08 9E-13 70.4 5.4 70 20-89 185-281 (439)
180 3izq_1 HBS1P, elongation facto 98.7 1.8E-08 6.1E-13 74.1 4.1 64 21-84 173-281 (611)
181 2qag_A Septin-2, protein NEDD5 98.6 1.2E-08 4E-13 70.8 2.9 52 19-70 41-105 (361)
182 2ohf_A Protein OLA1, GTP-bindi 98.6 1.1E-08 3.9E-13 71.8 2.8 70 21-90 28-135 (396)
183 2rdo_7 EF-G, elongation factor 98.6 4.1E-08 1.4E-12 73.2 5.4 73 21-93 16-127 (704)
184 2h5e_A Peptide chain release f 98.6 2.8E-08 9.6E-13 72.0 3.4 66 21-86 19-120 (529)
185 2qpt_A EH domain-containing pr 98.6 3.3E-08 1.1E-12 71.9 3.3 26 14-40 65-90 (550)
186 2dby_A GTP-binding protein; GD 98.5 6.7E-08 2.3E-12 67.3 4.5 61 21-83 7-111 (368)
187 3mca_A HBS1, elongation factor 98.5 1.9E-08 6.3E-13 73.8 0.8 63 21-83 183-290 (592)
188 2dy1_A Elongation factor G; tr 98.5 2.2E-07 7.4E-12 68.9 6.2 69 21-89 15-115 (665)
189 3t34_A Dynamin-related protein 98.5 1.1E-07 3.9E-12 65.5 4.4 28 13-41 33-60 (360)
190 1udx_A The GTP-binding protein 98.5 2.1E-07 7.2E-12 65.7 5.8 78 21-99 163-262 (416)
191 4a9a_A Ribosome-interacting GT 98.5 3E-07 1E-11 64.2 6.2 75 11-86 69-164 (376)
192 1jwy_B Dynamin A GTPase domain 98.4 2.2E-07 7.6E-12 62.5 3.1 26 14-40 24-49 (315)
193 3avx_A Elongation factor TS, e 98.3 9.2E-08 3.1E-12 74.7 0.9 66 21-86 302-397 (1289)
194 2x2e_A Dynamin-1; nitration, h 98.3 7.2E-07 2.5E-11 61.4 4.8 27 14-41 31-57 (353)
195 2j69_A Bacterial dynamin-like 98.3 4.6E-07 1.6E-11 67.5 3.1 37 60-96 174-225 (695)
196 2qag_C Septin-7; cell cycle, c 98.2 2.3E-06 7.9E-11 60.5 4.8 54 19-72 35-100 (418)
197 2qnr_A Septin-2, protein NEDD5 98.0 1E-06 3.4E-11 59.6 0.8 52 19-70 22-86 (301)
198 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 3.9E-06 1.3E-10 58.9 3.1 20 21-40 26-45 (392)
199 3cnl_A YLQF, putative uncharac 97.9 5.3E-07 1.8E-11 60.0 -2.2 50 20-71 104-155 (262)
200 1puj_A YLQF, conserved hypothe 97.7 8E-06 2.7E-10 54.8 0.8 51 19-71 124-176 (282)
201 1f5n_A Interferon-induced guan 97.4 5.5E-05 1.9E-09 55.6 2.2 53 20-72 43-103 (592)
202 2wsm_A Hydrogenase expression/ 97.4 3.2E-05 1.1E-09 49.2 0.8 24 14-38 30-53 (221)
203 1bif_A 6-phosphofructo-2-kinas 97.3 4.1E-06 1.4E-10 59.7 -5.0 83 14-98 38-146 (469)
204 2hf9_A Probable hydrogenase ni 97.2 3.7E-05 1.3E-09 49.0 -0.7 30 21-50 44-73 (226)
205 3vqt_A RF-3, peptide chain rel 97.1 0.0005 1.7E-08 50.1 4.2 78 16-93 31-145 (548)
206 3p32_A Probable GTPase RV1496/ 96.7 0.0005 1.7E-08 47.3 1.6 23 14-37 79-101 (355)
207 2p67_A LAO/AO transport system 96.7 0.0007 2.4E-08 46.3 2.0 22 14-36 56-77 (341)
208 3ec1_A YQEH GTPase; atnos1, at 96.6 0.00038 1.3E-08 48.3 0.1 19 20-38 167-185 (369)
209 3h2y_A GTPase family protein; 96.5 0.00044 1.5E-08 48.0 0.1 19 20-38 165-183 (368)
210 4fn5_A EF-G 1, elongation fact 96.4 0.006 2.1E-07 45.6 5.8 80 16-95 13-132 (709)
211 3zvr_A Dynamin-1; hydrolase, D 96.3 0.008 2.8E-07 45.6 6.0 27 13-40 50-76 (772)
212 2www_A Methylmalonic aciduria 96.2 0.00058 2E-08 47.0 -0.6 23 14-37 74-96 (349)
213 3q5d_A Atlastin-1; G protein, 96.1 0.0026 8.9E-08 45.4 2.3 17 21-37 73-89 (447)
214 1ly1_A Polynucleotide kinase; 95.9 0.0013 4.6E-08 40.1 0.1 23 15-37 2-24 (181)
215 1kgd_A CASK, peripheral plasma 95.8 0.00074 2.5E-08 41.9 -1.4 17 21-37 11-27 (180)
216 3j25_A Tetracycline resistance 95.8 0.0019 6.4E-08 47.8 0.5 64 21-84 8-103 (638)
217 1np6_A Molybdopterin-guanine d 95.7 0.0015 5E-08 40.8 -0.2 24 13-37 5-28 (174)
218 4gp7_A Metallophosphoesterase; 95.6 0.0012 4E-08 40.7 -1.0 15 21-35 15-29 (171)
219 2j37_W Signal recognition part 95.6 0.0098 3.4E-07 43.0 3.4 17 20-36 106-122 (504)
220 1qhx_A CPT, protein (chloramph 95.6 0.002 7E-08 39.4 -0.1 22 16-37 4-25 (178)
221 1lvg_A Guanylate kinase, GMP k 95.5 0.0012 4E-08 41.7 -1.4 17 21-37 10-26 (198)
222 1zp6_A Hypothetical protein AT 95.4 0.0014 4.9E-08 40.5 -1.1 18 21-38 15-32 (191)
223 1ye8_A Protein THEP1, hypothet 95.4 0.0014 4.7E-08 41.0 -1.4 17 21-37 6-22 (178)
224 3tr0_A Guanylate kinase, GMP k 95.3 0.0014 4.8E-08 40.9 -1.4 17 21-37 13-29 (205)
225 3a00_A Guanylate kinase, GMP k 95.3 0.0015 5.1E-08 40.7 -1.4 17 21-37 7-23 (186)
226 3sop_A Neuronal-specific septi 95.2 0.0016 5.6E-08 43.3 -1.4 18 21-38 8-25 (270)
227 1znw_A Guanylate kinase, GMP k 95.2 0.0018 6E-08 41.0 -1.4 17 21-37 26-42 (207)
228 1s96_A Guanylate kinase, GMP k 95.1 0.0018 6.3E-08 41.7 -1.4 18 21-38 22-39 (219)
229 1z6g_A Guanylate kinase; struc 95.1 0.0019 6.5E-08 41.4 -1.4 17 21-37 29-45 (218)
230 2f1r_A Molybdopterin-guanine d 95.1 0.0014 4.7E-08 40.8 -2.0 22 15-37 3-24 (171)
231 1xjc_A MOBB protein homolog; s 95.1 0.0033 1.1E-07 39.2 -0.3 23 14-37 4-26 (169)
232 3c8u_A Fructokinase; YP_612366 95.0 0.0022 7.5E-08 40.6 -1.3 16 21-36 28-43 (208)
233 1gvn_B Zeta; postsegregational 95.0 0.0061 2.1E-07 40.7 0.8 25 13-37 31-55 (287)
234 3t61_A Gluconokinase; PSI-biol 94.9 0.0029 9.9E-08 39.6 -0.8 19 19-37 22-40 (202)
235 2qor_A Guanylate kinase; phosp 94.9 0.0033 1.1E-07 39.6 -0.7 19 19-37 16-34 (204)
236 2cdn_A Adenylate kinase; phosp 94.9 0.0048 1.6E-07 38.6 0.0 27 11-37 16-42 (201)
237 2rhm_A Putative kinase; P-loop 94.8 0.005 1.7E-07 38.0 0.0 23 15-37 5-27 (193)
238 1ex7_A Guanylate kinase; subst 94.8 0.0034 1.2E-07 39.6 -0.8 17 21-37 7-23 (186)
239 3aez_A Pantothenate kinase; tr 94.8 0.0038 1.3E-07 42.4 -0.6 17 21-37 96-112 (312)
240 3szr_A Interferon-induced GTP- 94.8 0.0033 1.1E-07 46.3 -1.0 26 13-39 44-69 (608)
241 3tif_A Uncharacterized ABC tra 94.8 0.0033 1.1E-07 40.9 -0.9 18 21-38 37-54 (235)
242 2bbw_A Adenylate kinase 4, AK4 94.7 0.0044 1.5E-07 40.1 -0.4 18 19-36 31-48 (246)
243 3ney_A 55 kDa erythrocyte memb 94.7 0.0052 1.8E-07 39.2 -0.2 18 20-37 24-41 (197)
244 3lnc_A Guanylate kinase, GMP k 94.7 0.004 1.4E-07 39.9 -0.7 16 21-36 33-48 (231)
245 2pcj_A ABC transporter, lipopr 94.6 0.0037 1.3E-07 40.3 -1.0 18 21-38 36-53 (224)
246 1u0l_A Probable GTPase ENGC; p 94.6 0.0051 1.7E-07 41.3 -0.4 19 21-39 175-193 (301)
247 3lw7_A Adenylate kinase relate 94.6 0.0052 1.8E-07 36.9 -0.3 15 21-35 7-21 (179)
248 3tau_A Guanylate kinase, GMP k 94.6 0.0046 1.6E-07 39.2 -0.6 18 21-38 14-31 (208)
249 2rcn_A Probable GTPase ENGC; Y 94.6 0.0037 1.3E-07 43.4 -1.1 19 21-39 221-239 (358)
250 2j41_A Guanylate kinase; GMP, 94.6 0.0031 1.1E-07 39.3 -1.4 17 21-37 12-28 (207)
251 1kag_A SKI, shikimate kinase I 94.5 0.0038 1.3E-07 37.9 -1.1 17 21-37 10-26 (173)
252 1tev_A UMP-CMP kinase; ploop, 94.5 0.0067 2.3E-07 37.3 0.0 23 15-37 3-25 (196)
253 2ehv_A Hypothetical protein PH 94.5 0.0037 1.3E-07 40.0 -1.2 16 21-36 36-51 (251)
254 2qt1_A Nicotinamide riboside k 94.5 0.0086 2.9E-07 37.6 0.5 18 20-37 26-43 (207)
255 4a74_A DNA repair and recombin 94.4 0.0038 1.3E-07 39.5 -1.2 17 21-37 31-47 (231)
256 3kb2_A SPBC2 prophage-derived 94.4 0.0061 2.1E-07 36.8 -0.3 17 21-37 7-23 (173)
257 2yv5_A YJEQ protein; hydrolase 94.4 0.0041 1.4E-07 41.9 -1.2 16 21-36 171-186 (302)
258 1htw_A HI0065; nucleotide-bind 94.4 0.0036 1.2E-07 38.4 -1.4 19 21-39 39-57 (158)
259 1b0u_A Histidine permease; ABC 94.3 0.0048 1.6E-07 40.8 -0.9 18 21-38 38-55 (262)
260 2jeo_A Uridine-cytidine kinase 94.3 0.0056 1.9E-07 39.7 -0.6 17 21-37 31-47 (245)
261 1nij_A Hypothetical protein YJ 94.3 0.0071 2.4E-07 40.9 -0.2 24 14-38 4-27 (318)
262 1kht_A Adenylate kinase; phosp 94.3 0.007 2.4E-07 37.1 -0.2 19 19-37 7-25 (192)
263 2cbz_A Multidrug resistance-as 94.2 0.0052 1.8E-07 40.0 -0.9 18 21-38 37-54 (237)
264 2onk_A Molybdate/tungstate ABC 94.2 0.0048 1.6E-07 40.3 -1.1 18 21-38 30-47 (240)
265 3gfo_A Cobalt import ATP-bindi 94.2 0.0053 1.8E-07 41.0 -0.9 18 21-38 40-57 (275)
266 1jbk_A CLPB protein; beta barr 94.2 0.005 1.7E-07 37.3 -1.0 19 19-37 47-65 (195)
267 3ec2_A DNA replication protein 94.2 0.0035 1.2E-07 38.5 -1.7 17 21-37 44-60 (180)
268 4g1u_C Hemin import ATP-bindin 94.2 0.0054 1.9E-07 40.7 -0.9 18 21-38 43-60 (266)
269 1g6h_A High-affinity branched- 94.2 0.0054 1.8E-07 40.4 -0.9 18 21-38 39-56 (257)
270 1t9h_A YLOQ, probable GTPase E 94.1 0.002 6.8E-08 43.8 -3.2 18 21-38 179-196 (307)
271 3asz_A Uridine kinase; cytidin 94.1 0.0044 1.5E-07 39.0 -1.4 17 21-37 12-28 (211)
272 2bdt_A BH3686; alpha-beta prot 94.1 0.0088 3E-07 36.9 -0.0 17 21-37 8-24 (189)
273 1sq5_A Pantothenate kinase; P- 94.1 0.0067 2.3E-07 40.8 -0.6 17 21-37 86-102 (308)
274 2ff7_A Alpha-hemolysin translo 94.1 0.0059 2E-07 40.0 -0.9 18 21-38 41-58 (247)
275 4ido_A Atlastin-1; GTPase, GTP 94.1 0.069 2.4E-06 38.2 4.5 57 15-71 66-151 (457)
276 2qm8_A GTPase/ATPase; G protei 94.0 0.0054 1.8E-07 42.0 -1.2 16 21-36 61-76 (337)
277 1sgw_A Putative ABC transporte 94.0 0.006 2.1E-07 39.2 -0.9 18 21-38 41-58 (214)
278 2olj_A Amino acid ABC transpor 94.0 0.0061 2.1E-07 40.4 -0.9 18 21-38 56-73 (263)
279 1mv5_A LMRA, multidrug resista 94.0 0.0062 2.1E-07 39.7 -0.9 18 21-38 34-51 (243)
280 2pze_A Cystic fibrosis transme 94.0 0.0063 2.2E-07 39.4 -0.9 18 21-38 40-57 (229)
281 1tq4_A IIGP1, interferon-induc 94.0 0.01 3.6E-07 41.8 0.1 22 16-38 71-92 (413)
282 1ji0_A ABC transporter; ATP bi 93.9 0.0064 2.2E-07 39.6 -0.9 18 21-38 38-55 (240)
283 2qag_B Septin-6, protein NEDD5 93.9 0.0065 2.2E-07 43.1 -1.0 19 21-39 48-66 (427)
284 4eun_A Thermoresistant glucoki 93.9 0.0076 2.6E-07 37.8 -0.6 17 21-37 35-51 (200)
285 3b85_A Phosphate starvation-in 93.9 0.0058 2E-07 39.1 -1.2 18 21-38 28-45 (208)
286 2qi9_C Vitamin B12 import ATP- 93.9 0.0068 2.3E-07 39.8 -0.9 18 21-38 32-49 (249)
287 1knq_A Gluconate kinase; ALFA/ 93.8 0.0063 2.1E-07 37.1 -1.1 16 21-36 14-29 (175)
288 1ltq_A Polynucleotide kinase; 93.8 0.011 3.8E-07 39.1 0.1 23 15-37 2-24 (301)
289 2ghi_A Transport protein; mult 93.8 0.007 2.4E-07 39.9 -0.9 18 21-38 52-69 (260)
290 1vpl_A ABC transporter, ATP-bi 93.8 0.0071 2.4E-07 39.9 -0.9 18 21-38 47-64 (256)
291 2ixe_A Antigen peptide transpo 93.8 0.0072 2.5E-07 40.1 -0.9 18 21-38 51-68 (271)
292 2d2e_A SUFC protein; ABC-ATPas 93.7 0.0067 2.3E-07 39.8 -1.1 18 21-38 35-52 (250)
293 2ihy_A ABC transporter, ATP-bi 93.7 0.0074 2.5E-07 40.3 -0.9 18 21-38 53-70 (279)
294 1nks_A Adenylate kinase; therm 93.7 0.011 3.8E-07 36.2 -0.1 17 21-37 7-23 (194)
295 1yrb_A ATP(GTP)binding protein 93.7 0.012 3.9E-07 38.1 -0.0 21 16-36 15-35 (262)
296 2i3b_A HCR-ntpase, human cance 93.7 0.0058 2E-07 38.5 -1.4 17 21-37 7-23 (189)
297 3vaa_A Shikimate kinase, SK; s 93.7 0.0071 2.4E-07 37.9 -1.1 17 21-37 31-47 (199)
298 2kjq_A DNAA-related protein; s 93.7 0.0072 2.5E-07 36.5 -1.0 17 21-37 42-58 (149)
299 3l82_B F-box only protein 4; T 93.6 0.03 1E-06 36.5 1.9 31 66-97 108-150 (227)
300 2plr_A DTMP kinase, probable t 93.6 0.012 4.3E-07 36.6 0.0 19 19-37 8-26 (213)
301 2nq2_C Hypothetical ABC transp 93.6 0.0079 2.7E-07 39.6 -0.9 18 21-38 37-54 (253)
302 2zu0_C Probable ATP-dependent 93.6 0.0073 2.5E-07 40.0 -1.1 18 21-38 52-69 (267)
303 2yz2_A Putative ABC transporte 93.6 0.0081 2.8E-07 39.7 -0.9 18 21-38 39-56 (266)
304 3fvq_A Fe(3+) IONS import ATP- 93.6 0.0076 2.6E-07 41.8 -1.1 18 21-38 36-53 (359)
305 3uie_A Adenylyl-sulfate kinase 93.5 0.013 4.5E-07 36.6 0.0 18 20-37 30-47 (200)
306 1qf9_A UMP/CMP kinase, protein 93.5 0.015 5.2E-07 35.6 0.3 19 19-37 10-28 (194)
307 2p5t_B PEZT; postsegregational 93.5 0.01 3.6E-07 38.6 -0.6 23 14-36 31-53 (253)
308 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.0077 2.6E-07 38.0 -1.2 17 21-37 29-45 (235)
309 2vli_A Antibiotic resistance p 93.4 0.012 4.2E-07 35.9 -0.2 18 19-36 9-26 (183)
310 1e6c_A Shikimate kinase; phosp 93.4 0.012 4E-07 35.7 -0.3 17 21-37 8-24 (173)
311 3cm0_A Adenylate kinase; ATP-b 93.3 0.014 4.8E-07 35.7 -0.1 18 20-37 9-26 (186)
312 3tlx_A Adenylate kinase 2; str 93.3 0.015 5.3E-07 37.7 0.0 23 15-37 29-51 (243)
313 2eyu_A Twitching motility prot 93.3 0.0078 2.7E-07 39.8 -1.4 17 21-37 31-47 (261)
314 3umf_A Adenylate kinase; rossm 93.3 0.013 4.4E-07 37.8 -0.4 23 15-37 29-51 (217)
315 2pjz_A Hypothetical protein ST 93.2 0.01 3.4E-07 39.4 -0.9 18 21-38 36-53 (263)
316 1zd8_A GTP:AMP phosphotransfer 93.2 0.014 4.7E-07 37.2 -0.2 17 20-36 12-28 (227)
317 1cke_A CK, MSSA, protein (cyti 93.2 0.0093 3.2E-07 37.8 -1.0 17 21-37 11-27 (227)
318 1z47_A CYSA, putative ABC-tran 93.2 0.0093 3.2E-07 41.3 -1.1 18 21-38 47-64 (355)
319 3rlf_A Maltose/maltodextrin im 93.2 0.0094 3.2E-07 41.7 -1.1 18 21-38 35-52 (381)
320 2jaq_A Deoxyguanosine kinase; 93.2 0.012 3.9E-07 36.5 -0.6 17 21-37 6-22 (205)
321 2yyz_A Sugar ABC transporter, 93.2 0.0096 3.3E-07 41.3 -1.1 18 21-38 35-52 (359)
322 2it1_A 362AA long hypothetical 93.2 0.0097 3.3E-07 41.3 -1.1 18 21-38 35-52 (362)
323 2p65_A Hypothetical protein PF 93.1 0.0084 2.9E-07 36.3 -1.3 19 19-37 47-65 (187)
324 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.017 5.8E-07 37.8 0.0 19 19-37 8-26 (260)
325 1zak_A Adenylate kinase; ATP:A 93.1 0.013 4.5E-07 37.2 -0.5 19 19-37 9-27 (222)
326 1g29_1 MALK, maltose transport 93.1 0.01 3.5E-07 41.3 -1.1 18 21-38 35-52 (372)
327 2bwj_A Adenylate kinase 5; pho 93.1 0.015 5.2E-07 35.9 -0.2 21 17-37 14-34 (199)
328 1in4_A RUVB, holliday junction 93.0 0.009 3.1E-07 40.5 -1.4 17 21-37 57-73 (334)
329 2v9p_A Replication protein E1; 93.0 0.0091 3.1E-07 40.5 -1.4 16 21-36 132-147 (305)
330 3bos_A Putative DNA replicatio 93.0 0.013 4.5E-07 37.0 -0.6 17 21-37 58-74 (242)
331 2x8a_A Nuclear valosin-contain 93.0 0.0092 3.1E-07 39.6 -1.4 17 21-37 50-66 (274)
332 1ixz_A ATP-dependent metallopr 93.0 0.011 3.9E-07 38.2 -1.0 17 21-37 55-71 (254)
333 1v43_A Sugar-binding transport 93.0 0.011 3.7E-07 41.2 -1.1 17 22-38 44-60 (372)
334 2bbs_A Cystic fibrosis transme 93.0 0.012 4E-07 39.6 -0.9 18 21-38 70-87 (290)
335 1n0w_A DNA repair protein RAD5 92.9 0.01 3.5E-07 37.8 -1.2 17 21-37 30-46 (243)
336 1aky_A Adenylate kinase; ATP:A 92.9 0.017 5.8E-07 36.6 -0.2 19 19-37 8-26 (220)
337 3tqc_A Pantothenate kinase; bi 92.9 0.019 6.6E-07 39.2 0.0 20 16-36 94-113 (321)
338 1jjv_A Dephospho-COA kinase; P 92.9 0.019 6.5E-07 35.9 -0.0 21 16-37 4-24 (206)
339 1njg_A DNA polymerase III subu 92.8 0.014 4.8E-07 36.5 -0.6 19 19-37 49-67 (250)
340 2if2_A Dephospho-COA kinase; a 92.8 0.0097 3.3E-07 37.2 -1.4 17 21-37 7-23 (204)
341 2c95_A Adenylate kinase 1; tra 92.8 0.017 5.9E-07 35.5 -0.2 18 20-37 14-31 (196)
342 2wwf_A Thymidilate kinase, put 92.8 0.018 6E-07 36.0 -0.2 21 17-37 12-32 (212)
343 3tui_C Methionine import ATP-b 92.7 0.012 4.1E-07 40.9 -1.1 18 21-38 60-77 (366)
344 2yvu_A Probable adenylyl-sulfa 92.7 0.021 7E-07 35.2 0.0 18 19-36 17-34 (186)
345 2cvh_A DNA repair and recombin 92.7 0.017 5.7E-07 36.2 -0.4 18 20-37 25-42 (220)
346 1lw7_A Transcriptional regulat 92.7 0.0093 3.2E-07 41.0 -1.7 17 21-37 176-192 (365)
347 1nn5_A Similar to deoxythymidy 92.7 0.018 6.2E-07 36.0 -0.2 18 20-37 14-31 (215)
348 3trf_A Shikimate kinase, SK; a 92.7 0.019 6.4E-07 35.2 -0.2 18 20-37 10-27 (185)
349 3t15_A Ribulose bisphosphate c 92.7 0.015 5.3E-07 38.7 -0.7 19 19-37 40-58 (293)
350 2ze6_A Isopentenyl transferase 92.7 0.016 5.4E-07 37.9 -0.6 17 20-36 6-22 (253)
351 3iij_A Coilin-interacting nucl 92.5 0.016 5.6E-07 35.4 -0.6 18 20-37 16-33 (180)
352 4b4t_K 26S protease regulatory 92.5 0.015 5.1E-07 41.2 -0.9 23 15-37 205-228 (428)
353 2chg_A Replication factor C sm 92.5 0.017 5.7E-07 35.8 -0.6 18 20-37 43-60 (226)
354 1odf_A YGR205W, hypothetical 3 92.5 0.019 6.7E-07 38.5 -0.3 17 20-36 36-52 (290)
355 3zvl_A Bifunctional polynucleo 92.5 0.022 7.4E-07 40.0 -0.1 23 15-37 258-280 (416)
356 1a7j_A Phosphoribulokinase; tr 92.5 0.022 7.6E-07 38.1 -0.1 22 15-37 6-27 (290)
357 1via_A Shikimate kinase; struc 92.5 0.014 4.6E-07 35.7 -1.1 17 21-37 10-26 (175)
358 3gd7_A Fusion complex of cysti 92.5 0.014 4.7E-07 40.9 -1.1 16 22-37 54-69 (390)
359 2v54_A DTMP kinase, thymidylat 92.4 0.021 7.2E-07 35.4 -0.2 17 21-37 10-26 (204)
360 3fb4_A Adenylate kinase; psych 92.4 0.02 7E-07 36.0 -0.3 17 21-37 6-22 (216)
361 2vp4_A Deoxynucleoside kinase; 92.4 0.039 1.3E-06 35.4 1.0 18 21-38 26-43 (230)
362 3d31_A Sulfate/molybdate ABC t 92.4 0.0091 3.1E-07 41.2 -2.1 18 21-38 32-49 (348)
363 2qen_A Walker-type ATPase; unk 92.4 0.015 5.2E-07 38.8 -1.0 19 20-38 36-54 (350)
364 1ukz_A Uridylate kinase; trans 92.4 0.031 1.1E-06 34.7 0.6 17 20-36 20-36 (203)
365 2iyv_A Shikimate kinase, SK; t 92.4 0.018 6E-07 35.3 -0.6 17 21-37 8-24 (184)
366 1cr0_A DNA primase/helicase; R 92.3 0.02 6.9E-07 37.9 -0.4 17 21-37 41-57 (296)
367 3sr0_A Adenylate kinase; phosp 92.3 0.018 6.2E-07 36.7 -0.6 19 19-37 4-22 (206)
368 3e70_C DPA, signal recognition 92.3 0.022 7.5E-07 38.9 -0.3 22 16-37 130-151 (328)
369 2z0h_A DTMP kinase, thymidylat 92.3 0.014 4.7E-07 36.1 -1.3 17 21-37 6-22 (197)
370 3nh6_A ATP-binding cassette SU 92.2 0.011 3.7E-07 40.1 -1.8 17 21-37 86-102 (306)
371 1rz3_A Hypothetical protein rb 92.2 0.022 7.5E-07 35.7 -0.3 16 21-36 28-43 (201)
372 2fna_A Conserved hypothetical 92.2 0.016 5.6E-07 38.6 -1.0 18 20-37 35-52 (357)
373 1iy2_A ATP-dependent metallopr 92.1 0.014 4.7E-07 38.4 -1.4 17 21-37 79-95 (278)
374 3kta_A Chromosome segregation 92.0 0.025 8.4E-07 34.6 -0.3 17 20-36 31-47 (182)
375 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.02 6.9E-07 39.0 -0.7 18 21-38 177-194 (330)
376 1gtv_A TMK, thymidylate kinase 92.0 0.011 3.6E-07 37.1 -2.0 17 21-37 6-22 (214)
377 2qby_A CDC6 homolog 1, cell di 91.9 0.018 6.3E-07 38.8 -1.0 18 20-37 50-67 (386)
378 3jvv_A Twitching mobility prot 91.9 0.019 6.4E-07 39.7 -1.0 17 21-37 129-145 (356)
379 3dl0_A Adenylate kinase; phosp 91.9 0.025 8.7E-07 35.6 -0.3 17 21-37 6-22 (216)
380 4b4t_L 26S protease subunit RP 91.8 0.021 7.1E-07 40.6 -0.9 23 15-37 214-237 (437)
381 1oxx_K GLCV, glucose, ABC tran 91.7 0.0091 3.1E-07 41.2 -2.8 18 21-38 37-54 (353)
382 1rj9_A FTSY, signal recognitio 91.7 0.028 9.7E-07 37.9 -0.3 17 20-36 107-123 (304)
383 1xwi_A SKD1 protein; VPS4B, AA 91.7 0.03 1E-06 37.9 -0.2 23 15-37 44-67 (322)
384 2gza_A Type IV secretion syste 91.7 0.019 6.6E-07 39.5 -1.2 17 21-37 181-197 (361)
385 4b4t_M 26S protease regulatory 91.6 0.022 7.6E-07 40.4 -0.9 23 15-37 214-237 (434)
386 1lv7_A FTSH; alpha/beta domain 91.6 0.024 8.3E-07 36.6 -0.6 18 20-37 50-67 (257)
387 1vht_A Dephospho-COA kinase; s 91.6 0.034 1.2E-06 35.1 0.0 17 21-37 10-26 (218)
388 2dr3_A UPF0273 protein PH0284; 91.6 0.028 9.5E-07 35.8 -0.4 17 21-37 29-45 (247)
389 2w58_A DNAI, primosome compone 91.5 0.025 8.6E-07 35.2 -0.6 17 21-37 60-76 (202)
390 3ake_A Cytidylate kinase; CMP 91.5 0.033 1.1E-06 34.6 -0.1 17 21-37 8-24 (208)
391 3b9q_A Chloroplast SRP recepto 91.5 0.03 1E-06 37.7 -0.3 18 20-37 105-122 (302)
392 4e22_A Cytidylate kinase; P-lo 91.5 0.021 7.2E-07 37.2 -1.0 16 21-36 33-48 (252)
393 1y63_A LMAJ004144AAA protein; 91.4 0.032 1.1E-06 34.4 -0.2 17 21-37 16-32 (184)
394 1m7g_A Adenylylsulfate kinase; 91.4 0.036 1.2E-06 34.9 0.0 18 20-37 30-47 (211)
395 2ewv_A Twitching motility prot 91.4 0.023 8E-07 39.3 -1.0 17 21-37 142-158 (372)
396 1l8q_A Chromosomal replication 91.4 0.023 8E-07 38.0 -1.0 17 21-37 43-59 (324)
397 3h4m_A Proteasome-activating n 91.3 0.028 9.4E-07 36.8 -0.6 17 21-37 57-73 (285)
398 3eie_A Vacuolar protein sortin 91.2 0.037 1.3E-06 37.2 -0.1 23 15-37 50-73 (322)
399 3l2o_B F-box only protein 4; s 91.2 0.036 1.2E-06 37.8 -0.2 28 67-95 194-233 (312)
400 1fnn_A CDC6P, cell division co 91.2 0.025 8.5E-07 38.4 -1.0 19 20-38 49-67 (389)
401 1nlf_A Regulatory protein REPA 91.2 0.032 1.1E-06 36.7 -0.4 17 21-37 36-52 (279)
402 2xb4_A Adenylate kinase; ATP-b 91.2 0.034 1.1E-06 35.5 -0.3 17 21-37 6-22 (223)
403 1p5z_B DCK, deoxycytidine kina 91.1 0.052 1.8E-06 35.3 0.6 17 21-37 30-46 (263)
404 1uf9_A TT1252 protein; P-loop, 91.1 0.04 1.4E-06 34.0 0.0 17 21-37 14-30 (203)
405 1sxj_E Activator 1 40 kDa subu 91.1 0.023 7.8E-07 38.3 -1.3 18 20-37 41-58 (354)
406 2pbr_A DTMP kinase, thymidylat 91.1 0.035 1.2E-06 34.0 -0.3 17 21-37 6-22 (195)
407 3b9p_A CG5977-PA, isoform A; A 91.0 0.031 1E-06 36.9 -0.6 17 21-37 60-76 (297)
408 4eaq_A DTMP kinase, thymidylat 91.0 0.045 1.5E-06 35.3 0.1 17 21-37 32-48 (229)
409 2qz4_A Paraplegin; AAA+, SPG7, 91.0 0.031 1.1E-06 35.9 -0.6 17 21-37 45-61 (262)
410 2pt5_A Shikimate kinase, SK; a 90.8 0.039 1.3E-06 33.2 -0.3 17 21-37 6-22 (168)
411 1e4v_A Adenylate kinase; trans 90.7 0.039 1.3E-06 34.8 -0.3 17 21-37 6-22 (214)
412 2v1u_A Cell division control p 90.7 0.027 9.2E-07 38.1 -1.2 17 21-37 50-66 (387)
413 1ak2_A Adenylate kinase isoenz 90.7 0.042 1.4E-06 35.2 -0.2 18 20-37 21-38 (233)
414 2oap_1 GSPE-2, type II secreti 90.6 0.039 1.3E-06 39.9 -0.5 18 20-37 265-282 (511)
415 3co5_A Putative two-component 90.6 0.047 1.6E-06 32.4 -0.0 18 21-38 33-50 (143)
416 1pzn_A RAD51, DNA repair and r 90.6 0.028 9.5E-07 38.6 -1.2 18 21-38 137-154 (349)
417 2obl_A ESCN; ATPase, hydrolase 90.5 0.026 8.8E-07 38.8 -1.4 18 21-38 77-94 (347)
418 2yv5_A YJEQ protein; hydrolase 90.5 0.55 1.9E-05 31.4 5.2 23 76-98 84-107 (302)
419 2og2_A Putative signal recogni 90.5 0.043 1.5E-06 38.0 -0.3 18 20-37 162-179 (359)
420 2r62_A Cell division protease 90.5 0.028 9.6E-07 36.5 -1.2 17 21-37 50-66 (268)
421 4a82_A Cystic fibrosis transme 90.4 0.04 1.4E-06 40.2 -0.6 17 21-37 373-389 (578)
422 3be4_A Adenylate kinase; malar 90.4 0.045 1.5E-06 34.6 -0.2 17 21-37 11-27 (217)
423 3r20_A Cytidylate kinase; stru 90.4 0.046 1.6E-06 35.7 -0.2 22 15-36 9-30 (233)
424 2f6r_A COA synthase, bifunctio 90.4 0.051 1.8E-06 36.0 0.0 17 20-36 80-96 (281)
425 3foz_A TRNA delta(2)-isopenten 90.4 0.057 1.9E-06 36.9 0.2 24 14-37 9-32 (316)
426 1sxj_C Activator 1 40 kDa subu 90.4 0.027 9.2E-07 38.1 -1.4 17 21-37 52-68 (340)
427 2grj_A Dephospho-COA kinase; T 90.4 0.045 1.5E-06 34.5 -0.3 22 15-37 13-34 (192)
428 2pez_A Bifunctional 3'-phospho 90.4 0.052 1.8E-06 33.1 0.0 17 21-37 11-27 (179)
429 4b4t_J 26S protease regulatory 90.3 0.032 1.1E-06 39.3 -1.1 23 15-37 181-204 (405)
430 2npi_A Protein CLP1; CLP1-PCF1 90.3 0.028 9.5E-07 40.1 -1.4 17 21-37 144-160 (460)
431 2yhs_A FTSY, cell division pro 90.3 0.045 1.5E-06 39.6 -0.3 18 20-37 298-315 (503)
432 1ofh_A ATP-dependent HSL prote 90.3 0.039 1.3E-06 36.2 -0.6 17 21-37 56-72 (310)
433 2yl4_A ATP-binding cassette SU 90.2 0.039 1.3E-06 40.3 -0.7 17 21-37 376-392 (595)
434 1p9r_A General secretion pathw 90.2 0.035 1.2E-06 39.2 -1.0 17 21-37 173-189 (418)
435 2orw_A Thymidine kinase; TMTK, 90.2 0.044 1.5E-06 34.1 -0.4 19 18-36 6-24 (184)
436 3syl_A Protein CBBX; photosynt 90.2 0.034 1.2E-06 36.7 -1.0 16 21-36 73-88 (309)
437 2dpy_A FLII, flagellum-specifi 90.1 0.03 1E-06 39.7 -1.4 18 21-38 163-180 (438)
438 1zuh_A Shikimate kinase; alpha 90.1 0.033 1.1E-06 33.6 -1.1 23 14-37 7-29 (168)
439 3b60_A Lipid A export ATP-bind 90.0 0.038 1.3E-06 40.3 -0.9 17 21-37 375-391 (582)
440 1w5s_A Origin recognition comp 89.9 0.04 1.4E-06 37.7 -0.9 17 21-37 58-74 (412)
441 3uk6_A RUVB-like 2; hexameric 89.9 0.045 1.5E-06 37.1 -0.6 17 21-37 76-92 (368)
442 1f2t_A RAD50 ABC-ATPase; DNA d 89.8 0.062 2.1E-06 32.3 0.0 18 19-36 27-44 (149)
443 3lv8_A DTMP kinase, thymidylat 89.8 0.04 1.4E-06 35.9 -0.9 17 21-37 33-49 (236)
444 3crm_A TRNA delta(2)-isopenten 89.8 0.065 2.2E-06 36.6 0.1 23 15-37 5-27 (323)
445 1yqt_A RNAse L inhibitor; ATP- 89.7 0.038 1.3E-06 40.1 -1.1 18 21-38 53-70 (538)
446 1uj2_A Uridine-cytidine kinase 89.7 0.063 2.2E-06 34.8 0.0 17 21-37 28-44 (252)
447 2qby_B CDC6 homolog 3, cell di 89.7 0.047 1.6E-06 37.0 -0.6 18 20-37 50-67 (384)
448 3n70_A Transport activator; si 89.6 0.047 1.6E-06 32.4 -0.6 19 20-38 29-47 (145)
449 1d2n_A N-ethylmaleimide-sensit 89.6 0.048 1.6E-06 35.6 -0.6 17 21-37 70-86 (272)
450 3qf4_B Uncharacterized ABC tra 89.6 0.048 1.6E-06 40.0 -0.7 17 21-37 387-403 (598)
451 3ozx_A RNAse L inhibitor; ATP 89.6 0.043 1.5E-06 39.9 -0.9 18 21-38 31-48 (538)
452 1svm_A Large T antigen; AAA+ f 89.6 0.035 1.2E-06 38.7 -1.4 17 21-37 175-191 (377)
453 3nwj_A ATSK2; P loop, shikimat 89.5 0.04 1.4E-06 36.2 -1.1 17 21-37 54-70 (250)
454 3cf0_A Transitional endoplasmi 89.5 0.049 1.7E-06 36.3 -0.6 17 21-37 55-71 (301)
455 3lda_A DNA repair protein RAD5 89.4 0.04 1.4E-06 38.7 -1.2 16 21-36 184-199 (400)
456 3b5x_A Lipid A export ATP-bind 89.3 0.045 1.5E-06 39.9 -1.0 17 21-37 375-391 (582)
457 4b4t_H 26S protease regulatory 89.3 0.044 1.5E-06 39.3 -1.0 23 15-37 242-265 (467)
458 1sxj_D Activator 1 41 kDa subu 89.3 0.033 1.1E-06 37.3 -1.6 17 21-37 64-80 (353)
459 2qmh_A HPR kinase/phosphorylas 89.3 0.068 2.3E-06 34.3 -0.1 17 21-37 40-56 (205)
460 3euj_A Chromosome partition pr 89.2 0.038 1.3E-06 39.8 -1.4 17 21-37 35-51 (483)
461 4fcw_A Chaperone protein CLPB; 89.2 0.044 1.5E-06 36.2 -1.1 17 21-37 53-69 (311)
462 2r2a_A Uncharacterized protein 89.1 0.062 2.1E-06 34.1 -0.3 23 13-35 3-25 (199)
463 3exa_A TRNA delta(2)-isopenten 89.1 0.068 2.3E-06 36.6 -0.2 19 19-37 7-25 (322)
464 2ocp_A DGK, deoxyguanosine kin 89.1 0.074 2.5E-06 34.1 0.0 17 21-37 8-24 (241)
465 1tf7_A KAIC; homohexamer, hexa 89.1 0.046 1.6E-06 39.3 -1.1 15 21-35 45-59 (525)
466 1vma_A Cell division protein F 89.0 0.077 2.6E-06 35.9 0.0 21 17-37 106-126 (306)
467 1zcb_A G alpha I/13; GTP-bindi 89.0 0.077 2.6E-06 36.7 0.0 21 16-36 34-54 (362)
468 3qf4_A ABC transporter, ATP-bi 89.0 0.057 1.9E-06 39.5 -0.7 17 21-37 375-391 (587)
469 3d3q_A TRNA delta(2)-isopenten 89.0 0.074 2.5E-06 36.6 -0.1 18 20-37 12-29 (340)
470 2zts_A Putative uncharacterize 89.0 0.064 2.2E-06 34.1 -0.4 17 21-37 36-52 (251)
471 3pxg_A Negative regulator of g 88.9 0.062 2.1E-06 38.2 -0.5 18 20-37 206-223 (468)
472 3j16_B RLI1P; ribosome recycli 88.9 0.048 1.6E-06 40.3 -1.1 18 21-38 109-126 (608)
473 1hqc_A RUVB; extended AAA-ATPa 88.9 0.062 2.1E-06 35.6 -0.5 17 21-37 44-60 (324)
474 1qhl_A Protein (cell division 88.9 0.019 6.4E-07 37.3 -3.0 17 21-37 33-49 (227)
475 3pfi_A Holliday junction ATP-d 88.8 0.06 2.1E-06 36.1 -0.6 18 20-37 60-77 (338)
476 1e2k_A Thymidine kinase; trans 88.7 0.088 3E-06 36.1 0.2 16 22-37 11-26 (331)
477 1c9k_A COBU, adenosylcobinamid 88.6 0.063 2.2E-06 33.7 -0.6 20 19-38 3-22 (180)
478 2qp9_X Vacuolar protein sortin 88.6 0.073 2.5E-06 36.4 -0.3 17 21-37 90-106 (355)
479 2zan_A Vacuolar protein sortin 88.6 0.078 2.7E-06 37.4 -0.2 23 15-37 166-189 (444)
480 3dm5_A SRP54, signal recogniti 88.5 0.081 2.8E-06 37.7 -0.1 22 15-36 100-121 (443)
481 3kl4_A SRP54, signal recogniti 88.5 0.071 2.4E-06 37.8 -0.4 22 15-36 97-118 (433)
482 3bk7_A ABC transporter ATP-bin 88.5 0.058 2E-06 39.8 -0.9 18 21-38 123-140 (607)
483 2v3c_C SRP54, signal recogniti 88.4 0.078 2.7E-06 37.5 -0.3 18 20-37 104-121 (432)
484 3ozx_A RNAse L inhibitor; ATP 88.2 0.062 2.1E-06 39.1 -0.9 18 21-38 300-317 (538)
485 4b4t_I 26S protease regulatory 88.0 0.06 2.1E-06 38.3 -1.0 23 15-37 215-238 (437)
486 1of1_A Thymidine kinase; trans 87.8 0.098 3.4E-06 36.5 -0.0 16 22-37 56-71 (376)
487 2z4s_A Chromosomal replication 87.8 0.076 2.6E-06 37.5 -0.6 17 21-37 136-152 (440)
488 3qks_A DNA double-strand break 87.8 0.1 3.5E-06 32.9 0.0 18 19-36 27-44 (203)
489 2px0_A Flagellar biosynthesis 87.8 0.088 3E-06 35.3 -0.3 16 21-36 111-126 (296)
490 1tue_A Replication protein E1; 87.7 0.046 1.6E-06 35.3 -1.7 16 21-36 64-79 (212)
491 3m6a_A ATP-dependent protease 87.6 0.066 2.2E-06 38.8 -1.1 16 21-36 114-129 (543)
492 2axn_A 6-phosphofructo-2-kinas 87.6 0.11 3.6E-06 37.6 0.0 23 14-36 34-56 (520)
493 1um8_A ATP-dependent CLP prote 87.6 0.079 2.7E-06 36.2 -0.6 17 21-37 78-94 (376)
494 3qf7_A RAD50; ABC-ATPase, ATPa 87.5 0.091 3.1E-06 36.2 -0.4 16 21-36 29-44 (365)
495 1g8p_A Magnesium-chelatase 38 87.5 0.065 2.2E-06 35.9 -1.1 17 21-37 51-67 (350)
496 1jr3_A DNA polymerase III subu 87.4 0.084 2.9E-06 35.6 -0.6 19 19-37 42-60 (373)
497 3ux8_A Excinuclease ABC, A sub 87.1 0.085 2.9E-06 39.1 -0.7 15 21-35 354-368 (670)
498 3d8b_A Fidgetin-like protein 1 87.1 0.088 3E-06 36.0 -0.6 17 21-37 123-139 (357)
499 3vfd_A Spastin; ATPase, microt 87.1 0.11 3.7E-06 35.8 -0.2 17 21-37 154-170 (389)
500 3bh0_A DNAB-like replicative h 87.0 0.099 3.4E-06 35.2 -0.4 18 21-38 74-91 (315)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=1.3e-23 Score=137.06 Aligned_cols=81 Identities=15% Similarity=0.385 Sum_probs=63.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++||+.+.|.+.+.||++.++.. +.+..+.++||||+|+++|+. ++|||++
T Consensus 17 vlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~ 96 (216)
T 4dkx_A 17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT 96 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETT
T ss_pred EEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecc
Confidence 345999999999999999999999999999977532 456679999999999999887 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
+++||+++..|+.++.+
T Consensus 97 ~~~Sf~~i~~~~~~i~~ 113 (216)
T 4dkx_A 97 NVNSFQQTTKWIDDVRT 113 (216)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 2
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=2.2e-19 Score=113.68 Aligned_cols=81 Identities=31% Similarity=0.527 Sum_probs=71.6
Q ss_pred eEeccCCCcceeeeeccccCcCCC-CCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
+.+|++|||||||+++|..+.+.. .+.||++.....++...+.+.+||++|+++++. |+|||+++++
T Consensus 21 ~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 100 (199)
T 4bas_A 21 VMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL 100 (199)
T ss_dssp EEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH
Confidence 346999999999999999999998 889999988888889999999999999998766 9999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy2967 86 KLEASRNELHALIE 99 (101)
Q Consensus 86 sf~~~~~~~~~i~~ 99 (101)
+|+++..|+.++++
T Consensus 101 s~~~~~~~~~~~~~ 114 (199)
T 4bas_A 101 RLCVVKSEIQAMLK 114 (199)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998865
No 3
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=111.88 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce-----------EEEEECCCh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS-----------IYMVDAADT 84 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~-----------i~v~d~~~~ 84 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 25 ~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 25 AILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSR 104 (187)
T ss_dssp EEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCH
T ss_pred EEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCH
Confidence 346999999999999999999998999999977632 455678999999999988764 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++..|+.++.+
T Consensus 105 ~s~~~~~~~~~~i~~ 119 (187)
T 3c5c_A 105 QSFDSSSSYLELLAL 119 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 4
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=7.5e-19 Score=111.08 Aligned_cols=80 Identities=69% Similarity=1.061 Sum_probs=73.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|++|||||||++++..+++...+.||++.++..+....+.+.+||++|+++++. ++|||++++++|
T Consensus 27 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 106 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106 (188)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHH
Confidence 35999999999999999999988899999999888888899999999999987665 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 107 ~~~~~~~~~~~~ 118 (188)
T 1zd9_A 107 EASKNELHNLLD 118 (188)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988865
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.77 E-value=6.3e-19 Score=113.90 Aligned_cols=81 Identities=15% Similarity=0.347 Sum_probs=69.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|+++||||||+++|..+.+...+.||++..+.. +++..+.+.+||++|+++++. |+|||++++
T Consensus 32 vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 111 (214)
T 3q3j_B 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP 111 (214)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH
Confidence 35999999999999999999999999999987753 456779999999999998765 999999999
Q ss_pred hhHHH-HHHHHHHHHHh
Q psy2967 85 DKLEA-SRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~-~~~~~~~i~~~ 100 (101)
++|++ +..|+.++.+.
T Consensus 112 ~s~~~~~~~~~~~i~~~ 128 (214)
T 3q3j_B 112 ETVDSALKKWRTEILDY 128 (214)
T ss_dssp HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999 68899887653
No 6
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.77 E-value=5.5e-19 Score=111.47 Aligned_cols=81 Identities=32% Similarity=0.596 Sum_probs=71.1
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
-+.+|+++||||||++++..+++. .+.||++.....+..+++.+.+||++|+++++. ++|||+++++
T Consensus 25 i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 103 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103 (189)
T ss_dssp EEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH
Confidence 334699999999999999988876 578899988777777899999999999988765 9999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy2967 86 KLEASRNELHALIE 99 (101)
Q Consensus 86 sf~~~~~~~~~i~~ 99 (101)
+|+++..|+.++++
T Consensus 104 s~~~~~~~~~~~~~ 117 (189)
T 2x77_A 104 RMGVAKHELYALLD 117 (189)
T ss_dssp THHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 7
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=1.4e-18 Score=107.03 Aligned_cols=80 Identities=25% Similarity=0.457 Sum_probs=69.2
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
+|++|||||||++++..+.+...+.||.+.++. . +....+.+.+||++|+++++. ++|||++++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh
Confidence 599999999999999999988888999986653 2 345568999999999988766 999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
.+|+++..|+.++.+.
T Consensus 89 ~s~~~~~~~~~~~~~~ 104 (170)
T 1ek0_A 89 QSFIKARHWVKELHEQ 104 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888753
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.76 E-value=6.5e-19 Score=108.42 Aligned_cols=79 Identities=32% Similarity=0.625 Sum_probs=70.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|++|||||||++++..+.+. .+.||++.....+..+++.+.+||++|+++++. ++|||++++++|
T Consensus 5 ~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 83 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 83 (164)
T ss_dssp EECSTTSSHHHHHHHHHHHCSS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGH
T ss_pred EECCCCCCHHHHHHHHHcCCcC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 4699999999999999998887 478899987777888889999999999988765 899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 84 ~~~~~~~~~~~~ 95 (164)
T 1r8s_A 84 NEAREELMRMLA 95 (164)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 9
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.76 E-value=1.7e-18 Score=108.80 Aligned_cols=80 Identities=29% Similarity=0.590 Sum_probs=70.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|++|||||||++++.+++ ...+.||++.....+..++..+.+||++|+++++. ++|||++++++
T Consensus 22 ~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (186)
T 1ksh_A 22 LMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR 100 (186)
T ss_dssp EEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG
T ss_pred EEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH
Confidence 346999999999999999988 66889999988877777899999999999987654 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 101 ~~~~~~~~~~~~~ 113 (186)
T 1ksh_A 101 MQDCQRELQSLLV 113 (186)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988865
No 10
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=108.09 Aligned_cols=81 Identities=27% Similarity=0.560 Sum_probs=72.0
Q ss_pred EeccCCCcceeeeeccccCc-CCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ-FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
.+|++|||||||++++.++. +...+.+|++.....+..+++.+.+||++|+++++. ++|||++++++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 105 (190)
T 2h57_A 26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR 105 (190)
T ss_dssp EEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH
Confidence 35999999999999999988 677889999988877887889999999999987765 99999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2967 87 LEASRNELHALIEK 100 (101)
Q Consensus 87 f~~~~~~~~~i~~~ 100 (101)
|+++..|+.+++++
T Consensus 106 ~~~~~~~~~~~~~~ 119 (190)
T 2h57_A 106 MVVAKEELDTLLNH 119 (190)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888753
No 11
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.76 E-value=1.1e-18 Score=108.85 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=66.1
Q ss_pred eeee-EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce-------EEEEECCCh
Q psy2967 16 TVGF-NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS-------IYMVDAADT 84 (101)
Q Consensus 16 ~~g~-~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~~~ 84 (101)
.+.+ .+|++|||||||+++|..+.+.+ +.||++..+.. +++..+.+.+||++|++++.. ++|||++++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~d~~ilv~D~~~~ 85 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDE 85 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEEETTCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCchhHHHHhCCEEEEEEECcCH
Confidence 3443 35999999999999999999886 88998866532 344568899999999987433 999999999
Q ss_pred hhHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALI 98 (101)
Q Consensus 85 ~sf~~~~~~~~~i~ 98 (101)
++|+++..|+..+.
T Consensus 86 ~s~~~~~~~~~~i~ 99 (178)
T 2iwr_A 86 NSFQAVSRLHGQLS 99 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999766554
No 12
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.76 E-value=1.6e-18 Score=109.65 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=70.2
Q ss_pred cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCcEEEEEEeeCCCCccce-------EEEEECCC
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPRFRS-------IYMVDAAD 83 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~~ 83 (101)
.+.+.+. +|++|||||||+++++.+.+...+.||.+..... +.+..+.+.+||++|+++++. ++|||+++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~i~v~d~~~ 97 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVFSLED 97 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEEETTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhheecCCCEEEEEEECcC
Confidence 3444444 5999999999999999999998888885533333 445568899999999998663 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+.++.+
T Consensus 98 ~~s~~~~~~~~~~i~~ 113 (184)
T 3ihw_A 98 EISFQTVYNYFLRLCS 113 (184)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
No 13
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.76 E-value=2.6e-18 Score=107.43 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=70.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.||.+..+.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 11 ~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI 90 (181)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH
Confidence 36999999999999999999998999999977643 344558899999999998765 999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
++|+.+..|+.++.+.
T Consensus 91 ~s~~~~~~~~~~~~~~ 106 (181)
T 3t5g_A 91 KSFEVIKVIHGKLLDM 106 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 14
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=2.1e-18 Score=108.59 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=69.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. ++...+.+.+||++|+++++. ++|||+++
T Consensus 11 ~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 90 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC
Confidence 346999999999999999999988899999876642 445678999999999987655 89999999
Q ss_pred hhhHHHH-HHHHHHHHH
Q psy2967 84 TDKLEAS-RNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~-~~~~~~i~~ 99 (101)
+++|+++ ..|+.++.+
T Consensus 91 ~~s~~~~~~~~~~~i~~ 107 (184)
T 1m7b_A 91 PETLDSVLKKWKGEIQE 107 (184)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 689887764
No 15
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=2.2e-18 Score=106.03 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=69.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.||++..+.. ++...+.+.+||++|+++++. ++|||++++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 87 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87 (167)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 35999999999999999999988899999876643 455678999999999988766 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
.+|+++..|+.++.+
T Consensus 88 ~s~~~~~~~~~~i~~ 102 (167)
T 1c1y_A 88 STFNDLQDLREQILR 102 (167)
T ss_dssp HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 16
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=5.3e-19 Score=110.68 Aligned_cols=80 Identities=31% Similarity=0.617 Sum_probs=66.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|++|||||||++++..+++ ..+.||++.....+..++..+.+||++|+++++. ++|||++++++
T Consensus 22 ~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (183)
T 1moz_A 22 LILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR 100 (183)
T ss_dssp EEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT
T ss_pred EEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 3469999999999999999888 5788999988777777789999999999987655 89999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 101 ~~~~~~~~~~~~~ 113 (183)
T 1moz_A 101 MSTASKELHLMLQ 113 (183)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988764
No 17
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=1.6e-18 Score=108.58 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=47.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. .+ ++..+.+.+||++|+++++. ++|||++
T Consensus 12 ~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (183)
T 2fu5_C 12 LLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 91 (183)
T ss_dssp EEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999888888899986653 33 34458999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++.+|+++..|+.++.+.
T Consensus 92 ~~~s~~~~~~~~~~i~~~ 109 (183)
T 2fu5_C 92 NEKSFDNIRNWIRNIEEH 109 (183)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988753
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=2.2e-18 Score=107.99 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred ccceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------E
Q psy2967 13 MIPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------I 76 (101)
Q Consensus 13 ~~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i 76 (101)
..+.+.+. +|++|||||||++++..+.+...+.||++..+.. +.+..+.+.+||++|+++++. +
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34445444 5999999999999999999998999999866632 445568889999999998776 9
Q ss_pred EEEECCChhhHHHHHHHHHHHHH
Q psy2967 77 YMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
+|||++++++|+++..|+.++.+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~ 117 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILR 117 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988865
No 19
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=1.6e-18 Score=110.70 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=61.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|++|||||||++++.++++. .+.||++.....+..+++.+.+||++|+++++. ++|||++++++|
T Consensus 30 lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~ 108 (198)
T 1f6b_A 30 FLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERL 108 (198)
T ss_dssp EEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGH
T ss_pred EECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 4699999999999999998875 688899887777777779999999999987765 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 109 ~~~~~~~~~~~~ 120 (198)
T 1f6b_A 109 LESKEELDSLMT 120 (198)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 20
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.75 E-value=1.5e-18 Score=109.30 Aligned_cols=81 Identities=33% Similarity=0.615 Sum_probs=70.3
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
-+.+|++|||||||++++.++.+. .+.||+|+....+..+++.+.+||++|+++++. ++|||+++++
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK 97 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH
Confidence 344699999999999999988654 678999988777777799999999999998765 8999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy2967 86 KLEASRNELHALIE 99 (101)
Q Consensus 86 sf~~~~~~~~~i~~ 99 (101)
+|+++..|+.++++
T Consensus 98 s~~~~~~~~~~~~~ 111 (181)
T 1fzq_A 98 RFEETGQELTELLE 111 (181)
T ss_dssp GHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 21
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=5.4e-18 Score=104.77 Aligned_cols=80 Identities=36% Similarity=0.637 Sum_probs=70.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|++|||||||++++..+.+. .+.||++.....+......+.+||++|+++++. ++|||++++++
T Consensus 11 ~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 89 (171)
T 1upt_A 11 LILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR 89 (171)
T ss_dssp EEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT
T ss_pred EEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH
Confidence 34699999999999999998886 578999988877877899999999999987765 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 90 ~~~~~~~~~~~~~ 102 (171)
T 1upt_A 90 IGISKSELVAMLE 102 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 22
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-18 Score=109.60 Aligned_cols=80 Identities=30% Similarity=0.484 Sum_probs=67.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|++|||||||++++..+++. .+.||++.....+..+++.+.+||++|+++++. ++|||++++++
T Consensus 20 ~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 98 (187)
T 1zj6_A 20 IIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 98 (187)
T ss_dssp EEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT
T ss_pred EEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence 34699999999999999998887 788999977777777889999999999988765 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 99 ~~~~~~~~~~~~~ 111 (187)
T 1zj6_A 99 ISVTREELYKMLA 111 (187)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 23
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.2e-18 Score=107.90 Aligned_cols=86 Identities=21% Similarity=0.414 Sum_probs=72.1
Q ss_pred cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------E
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------I 76 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i 76 (101)
.+.+.+. +|+++||||||++++..+.+...+.||++.++. . +....+.+.+||++|+++++. |
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 3444444 599999999999999999998889999887653 2 345568999999999988766 8
Q ss_pred EEEECCChhhHHHHHHHHHHHHH
Q psy2967 77 YMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
+|||++++.+|+++..|+.++.+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~ 115 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELET 115 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.74 E-value=5.1e-18 Score=104.80 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=65.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. . +++..+.+.+||++|+++++. ++|||++
T Consensus 10 ~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (170)
T 1z08_A 10 VLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDIT 89 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECc
Confidence 34699999999999999999988888999987654 2 345678999999999987765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++.+
T Consensus 90 ~~~s~~~~~~~~~~~~~ 106 (170)
T 1z08_A 90 DEDSFQKVKNWVKELRK 106 (170)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 25
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=4e-18 Score=109.64 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=69.9
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
-+.+|++|||||||+++|..+.+...+.||++..+.. ++...+.+.+||++|+++++. |+|||++
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~ 110 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 110 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECC
Confidence 3446999999999999999999998899999877642 345679999999999987655 9999999
Q ss_pred ChhhHHHH-HHHHHHHHH
Q psy2967 83 DTDKLEAS-RNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~-~~~~~~i~~ 99 (101)
++++|+++ ..|+.++.+
T Consensus 111 ~~~s~~~~~~~~~~~i~~ 128 (205)
T 1gwn_A 111 RPETLDSVLKKWKGEIQE 128 (205)
T ss_dssp CHHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 99999999 789888765
No 26
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.74 E-value=5e-18 Score=107.70 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=70.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|++|||||||++++..+++. .+.||++.....+..+++.+.+||++|+++++. ++|||++++++|
T Consensus 28 ~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 106 (190)
T 1m2o_B 28 FLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERF 106 (190)
T ss_dssp EEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGH
T ss_pred EECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHH
Confidence 4699999999999999998876 688999988777777789999999999987765 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 107 ~~~~~~~~~~~~ 118 (190)
T 1m2o_B 107 DEARVELDALFN 118 (190)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999988864
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=6.5e-18 Score=104.05 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=70.0
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++. . +....+.+.+||++|+++++. ++|||++
T Consensus 10 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (170)
T 1r2q_A 10 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT 89 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECC
Confidence 34699999999999999999998888899887653 2 344578999999999998765 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++.+|+++..|+.++.+.
T Consensus 90 ~~~s~~~~~~~~~~~~~~ 107 (170)
T 1r2q_A 90 NEESFARAKNWVKELQRQ 107 (170)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999888653
No 28
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=3.2e-18 Score=108.75 Aligned_cols=80 Identities=31% Similarity=0.626 Sum_probs=66.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|++|||||||++++..+++. .+.||+++....+..+++.+.+||++|+++++. ++|||++++++
T Consensus 33 ~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s 111 (192)
T 2b6h_A 33 LMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 111 (192)
T ss_dssp EEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG
T ss_pred EEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 34699999999999999998887 578899988777888899999999999988765 89999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 112 ~~~~~~~l~~~~~ 124 (192)
T 2b6h_A 112 VQESADELQKMLQ 124 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 29
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=5.7e-18 Score=104.00 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=66.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.+|.+..+.. +.+..+.+.+||++|+++++. ++|||++++
T Consensus 9 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 88 (168)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH
Confidence 35999999999999999999988889998876643 345568999999999987765 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+.+..|+.++.+
T Consensus 89 ~s~~~~~~~~~~i~~ 103 (168)
T 1u8z_A 89 ESFAATADFREQILR 103 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988875
No 30
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=2.3e-18 Score=108.12 Aligned_cols=80 Identities=30% Similarity=0.482 Sum_probs=70.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|++|||||||++++..+++ ..+.||++.....+..+++.+.+||++|+++++. ++|||++++++
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 103 (181)
T 2h17_A 25 IIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 103 (181)
T ss_dssp EEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT
T ss_pred EEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 3459999999999999999988 5788999987777777889999999999988765 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.++++
T Consensus 104 ~~~~~~~~~~~~~ 116 (181)
T 2h17_A 104 ISVTREELYKMLA 116 (181)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988865
No 31
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=5.7e-18 Score=107.26 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=70.1
Q ss_pred eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
.-+.+|++|||||||++++..+.+...+.||++..+.. +.+..+.+.+||++|+++++. ++|||+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 104 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAV 104 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEEC
Confidence 33446999999999999999999998999999977754 445668899999999998765 999999
Q ss_pred CChhhHHHH-HHHHHHHHH
Q psy2967 82 ADTDKLEAS-RNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~-~~~~~~i~~ 99 (101)
+++++|+++ ..|+..+..
T Consensus 105 ~~~~s~~~~~~~~~~~~~~ 123 (194)
T 3reg_A 105 NNRTSFDNISTKWEPEIKH 123 (194)
T ss_dssp TCHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 999999998 678777654
No 32
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=5.6e-18 Score=108.72 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=69.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++. . +++..+.+.+||++|+++++. ++|||++
T Consensus 30 ~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 109 (201)
T 2ew1_A 30 VLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT 109 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC
Confidence 34699999999999999999998889999987763 2 334558999999999998765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++.+
T Consensus 110 ~~~s~~~~~~~~~~i~~ 126 (201)
T 2ew1_A 110 CEESFRCLPEWLREIEQ 126 (201)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.74 E-value=8.9e-18 Score=104.50 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=69.4
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.+|++..+.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 14 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR 93 (181)
T ss_dssp EEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH
Confidence 36999999999999999999998999999877643 334458999999999998766 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
.+|+++..|+.++++
T Consensus 94 ~s~~~~~~~~~~~~~ 108 (181)
T 2fn4_A 94 QSFNEVGKLFTQILR 108 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998854
No 34
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.73 E-value=6.2e-18 Score=108.40 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +++..+.+.+||++|+++++. |+|||+++
T Consensus 13 ~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 92 (212)
T 2j0v_A 13 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS 92 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC
Confidence 346999999999999999999988899999866542 455668999999999998765 99999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+++|+++. .|+.++..
T Consensus 93 ~~s~~~~~~~~~~~~~~ 109 (212)
T 2j0v_A 93 KASYENVLKKWMPELRR 109 (212)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997 79888765
No 35
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=7.4e-18 Score=104.72 Aligned_cols=81 Identities=19% Similarity=0.409 Sum_probs=69.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++.. +.+..+.+.+||++|+++++. ++|||++
T Consensus 18 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 97 (179)
T 2y8e_A 18 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 97 (179)
T ss_dssp EEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC
Confidence 345999999999999999999988889999866532 334558999999999988766 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 98 ~~~s~~~~~~~~~~i~~ 114 (179)
T 2y8e_A 98 NTNSFHQTSKWIDDVRT 114 (179)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 36
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.73 E-value=2.3e-18 Score=107.23 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=68.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecC---cEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKG---NVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
+.+|++|||||||++++..+.+...+.||++.++ ..+... .+.+.+||++|+++++. ++|||+
T Consensus 10 ~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 89 (178)
T 2hxs_A 10 VVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDI 89 (178)
T ss_dssp EEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEET
T ss_pred EEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEEC
Confidence 3469999999999999999998877888988544 344433 48999999999998765 999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++.+|+++..|+.++.+
T Consensus 90 ~~~~s~~~~~~~~~~i~~ 107 (178)
T 2hxs_A 90 TNYQSFENLEDWYTVVKK 107 (178)
T ss_dssp TCHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.73 E-value=7.3e-18 Score=105.67 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=68.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. .+ .++.+.+.+||++|+++++. ++|||++
T Consensus 14 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (186)
T 2bme_A 14 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 93 (186)
T ss_dssp EEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999998888899886653 23 34458999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 94 ~~~s~~~~~~~~~~~~~ 110 (186)
T 2bme_A 94 SRETYNALTNWLTDARM 110 (186)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 38
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=110.25 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=60.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEe--cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++ ..+. +..+.+.+||++|+++++. |+|||++
T Consensus 33 ~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~ 112 (201)
T 2hup_A 33 VLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT 112 (201)
T ss_dssp EEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECC
Confidence 3469999999999999999999888899988554 3333 4458999999999998765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++++|+++..|+.++.+
T Consensus 113 ~~~s~~~~~~~~~~i~~ 129 (201)
T 2hup_A 113 KRSSFLSVPHWIEDVRK 129 (201)
T ss_dssp BHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998875
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=104.06 Aligned_cols=81 Identities=22% Similarity=0.448 Sum_probs=66.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--cCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++.++.+...+.||++.++. .+. +..+.+.+||++|+++++. ++|||+++
T Consensus 14 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS 93 (181)
T ss_dssp EECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 3699999999999999999988888899886654 333 3448999999999987765 99999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy2967 84 TDKLEASRNELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~~ 100 (101)
+.+|+++..|+.++.+.
T Consensus 94 ~~s~~~~~~~~~~~~~~ 110 (181)
T 3tw8_B 94 AESFVNVKRWLHEINQN 110 (181)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 40
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=106.68 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=67.8
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
+|++|||||||++++..+.+...+.||.+..+.. +....+.+.+||++|+++++. ++|||+++++
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 109 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH 109 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH
T ss_pred ECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH
Confidence 5999999999999999999998999999876643 346679999999999988765 9999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy2967 86 KLEASRNELHALIE 99 (101)
Q Consensus 86 sf~~~~~~~~~i~~ 99 (101)
+|+.+..|+.++.+
T Consensus 110 s~~~~~~~~~~i~~ 123 (201)
T 3oes_A 110 SFQVIESLYQKLHE 123 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 41
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=107.31 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=61.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +++..+.+.+||++|+++++. ++|||+++
T Consensus 24 ~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 103 (201)
T 2q3h_A 24 VLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS 103 (201)
T ss_dssp EEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC
Confidence 335999999999999999999988899999876642 334558899999999998765 99999999
Q ss_pred hhhHHHHH-HHHHHHHHh
Q psy2967 84 TDKLEASR-NELHALIEK 100 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~~ 100 (101)
+++|+++. .|+.++..+
T Consensus 104 ~~s~~~~~~~~~~~~~~~ 121 (201)
T 2q3h_A 104 PSSFQNVSEKWVPEIRCH 121 (201)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99999997 798887653
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.3e-17 Score=105.60 Aligned_cols=80 Identities=21% Similarity=0.352 Sum_probs=69.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+...+.||++.++.. +....+.+.+||++|+++++. ++|||+++
T Consensus 28 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~ 107 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK 107 (192)
T ss_dssp EEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC
Confidence 35999999999999999999888899999977643 345678999999999988766 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+.++.+
T Consensus 108 ~~s~~~~~~~~~~i~~ 123 (192)
T 2fg5_A 108 QDSFYTLKKWVKELKE 123 (192)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=4.3e-18 Score=107.46 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=69.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccc-e------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFR-S------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~-~------------i~v~d~ 81 (101)
+.+|++|||||||++++..+.+...+.+|++.++. .+ .+..+.+.+||++|+++++ . |+|||+
T Consensus 24 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~ 103 (189)
T 1z06_A 24 IVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM 103 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEET
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEEC
Confidence 34599999999999999999998888899886553 33 3445899999999998876 3 999999
Q ss_pred CChhhHHHHHHHHHHHHHh
Q psy2967 82 ADTDKLEASRNELHALIEK 100 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~~ 100 (101)
+++.+|+.+..|+.++.+.
T Consensus 104 ~~~~s~~~~~~~~~~i~~~ 122 (189)
T 1z06_A 104 TNMASFHSLPAWIEECKQH 122 (189)
T ss_dssp TCHHHHHTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=1.4e-17 Score=102.21 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=68.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.||.+..+.. +.+..+.+.+||++|+++++. ++|||++++
T Consensus 8 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (167)
T 1kao_A 8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ 87 (167)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH
Confidence 35999999999999999999988888988755432 345567899999999988765 999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
.+|+++..|+.++.+.
T Consensus 88 ~s~~~~~~~~~~i~~~ 103 (167)
T 1kao_A 88 QSFQDIKPMRDQIIRV 103 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888753
No 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.3e-18 Score=106.64 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=68.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|+++||||||++++..+.+...+.||++..+. . +.+..+.+.+||++|+++++. ++|||++++
T Consensus 23 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (194)
T 2atx_A 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 102 (194)
T ss_dssp EEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH
Confidence 3599999999999999999998889999986653 2 344568999999999987765 999999999
Q ss_pred hhHHHHH-HHHHHHHHh
Q psy2967 85 DKLEASR-NELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~~ 100 (101)
++|+++. .|+.++.+.
T Consensus 103 ~s~~~~~~~~~~~~~~~ 119 (194)
T 2atx_A 103 ASFQNVKEEWVPELKEY 119 (194)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 9999997 798887653
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.6e-17 Score=102.42 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=68.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++.++.+...+.||.+..+.. +......+.+||++|+++++. ++|||+++
T Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC
Confidence 35999999999999999999888889999876532 344568999999999987765 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+++++..|+.++.+
T Consensus 91 ~~s~~~~~~~~~~l~~ 106 (170)
T 1z0j_A 91 EETFSTLKNWVRELRQ 106 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=105.96 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=69.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.+|.+..+.. +.+..+.+.+||++|+++++. ++|||++++
T Consensus 19 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 98 (206)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH
Confidence 35999999999999999999988899998876532 344557999999999988765 999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q psy2967 85 DKLEASRNELHALIEK 100 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~~ 100 (101)
++|+.+..|+.++.+.
T Consensus 99 ~s~~~~~~~~~~i~~~ 114 (206)
T 2bov_A 99 ESFAATADFREQILRV 114 (206)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988753
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=6.7e-18 Score=103.95 Aligned_cols=81 Identities=19% Similarity=0.389 Sum_probs=69.0
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. . +....+.+.+||++|+++++. ++|||++
T Consensus 9 ~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTT 88 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECc
Confidence 34699999999999999999998888999886553 2 334568999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++.+
T Consensus 89 ~~~s~~~~~~~~~~i~~ 105 (168)
T 1z2a_A 89 DRESFEAISSWREKVVA 105 (168)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988865
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=1.6e-17 Score=103.88 Aligned_cols=86 Identities=15% Similarity=0.238 Sum_probs=71.2
Q ss_pred cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EE
Q psy2967 14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IY 77 (101)
Q Consensus 14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~ 77 (101)
.+.+.+. +|++|||||||++++..+.+...+.+|.+..+.. +....+.+.+||++|+++++. ++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 3344433 5999999999999999999988889998876643 344558999999999987765 99
Q ss_pred EEECCChhhHHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|||++++++|+.+..|+.++.+
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~ 117 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILR 117 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 50
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=105.58 Aligned_cols=81 Identities=17% Similarity=0.407 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++. . +....+.+.+||++|+++++. |+|||++
T Consensus 12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 91 (203)
T 1zbd_A 12 LIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDIT 91 (203)
T ss_dssp EEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECc
Confidence 34699999999999999999998888999986664 2 344568999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 92 ~~~s~~~~~~~~~~i~~ 108 (203)
T 1zbd_A 92 NEESFNAVQDWSTQIKT 108 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=1.2e-17 Score=104.14 Aligned_cols=83 Identities=19% Similarity=0.354 Sum_probs=70.0
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
-+.+|++|||||||++++..+++...+.+|++.++. . +....+.+.+||++|+++++. ++|||+
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDV 94 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEEC
Confidence 344699999999999999999998888888885543 2 344568999999999988765 999999
Q ss_pred CChhhHHHHHHHHHHHHHh
Q psy2967 82 ADTDKLEASRNELHALIEK 100 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~~ 100 (101)
+++.+|+++..|+.++.+.
T Consensus 95 ~~~~s~~~~~~~~~~~~~~ 113 (181)
T 2efe_B 95 TNQASFERAKKWVQELQAQ 113 (181)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=1.1e-17 Score=104.01 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=65.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. . +.+..+.+.+||++|+++++. ++|||++
T Consensus 11 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (177)
T 1wms_A 11 ILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVD 90 (177)
T ss_dssp EEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999988888999987763 2 334458999999999988765 8999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 91 ~~~s~~~~~~~~~~~~~ 107 (177)
T 1wms_A 91 DSQSFQNLSNWKKEFIY 107 (177)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 53
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=104.97 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=69.8
Q ss_pred eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
-+.+|++|||||||++++..+.+...+.|+++.++. .+ .+..+.+.+||++|+++++. ++|||+
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 98 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 98 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEEC
Confidence 344699999999999999999998888999886664 23 34458999999999988765 999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++.+|+++..|+.++.+
T Consensus 99 ~~~~s~~~~~~~~~~i~~ 116 (196)
T 3tkl_A 99 TDQESFNNVKQWLQEIDR 116 (196)
T ss_dssp TCHHHHHTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=103.38 Aligned_cols=82 Identities=24% Similarity=0.429 Sum_probs=65.1
Q ss_pred eeEeccCCCcceeeeeccccCcCC-CCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967 18 GFNMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVD 80 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d 80 (101)
-+.+|++|||||||++++..+.+. ..+.||++.++.. +.+..+.+.+||++|+++++. ++|||
T Consensus 13 i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYD 92 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEE
Confidence 344699999999999999998885 4678888877643 344568999999999988765 99999
Q ss_pred CCChhhHHHHHHHHHHHHH
Q psy2967 81 AADTDKLEASRNELHALIE 99 (101)
Q Consensus 81 ~~~~~sf~~~~~~~~~i~~ 99 (101)
++++.+|+++..|+.++.+
T Consensus 93 ~~~~~s~~~~~~~~~~i~~ 111 (180)
T 2g6b_A 93 VTNKASFDNIQAWLTEIHE 111 (180)
T ss_dssp TTCHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=7.4e-18 Score=103.93 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=63.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. .+ .+..+.+.+||++|+++++. ++|||++
T Consensus 7 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 86 (170)
T ss_dssp EEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECC
Confidence 34699999999999999999988888888885553 33 34568999999999988766 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++.+|+++..|+.++.+.
T Consensus 87 ~~~s~~~~~~~~~~i~~~ 104 (170)
T 1g16_A 87 DERTFTNIKQWFKTVNEH 104 (170)
T ss_dssp CHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999887653
No 56
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=1.3e-17 Score=106.52 Aligned_cols=81 Identities=21% Similarity=0.444 Sum_probs=69.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. . +.+..+.+.+||++|+++++. |+|||++
T Consensus 12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~ 91 (206)
T 2bcg_Y 12 LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT 91 (206)
T ss_dssp EEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECc
Confidence 34699999999999999999998888899886653 3 344568999999999988766 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+.+..|+.++..
T Consensus 92 ~~~s~~~~~~~~~~i~~ 108 (206)
T 2bcg_Y 92 DQESFNGVKMWLQEIDR 108 (206)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 57
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.72 E-value=7.9e-18 Score=108.72 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=72.2
Q ss_pred eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
+.-+.+|++|||||||+++|+.+.+...+.+|.+.+... +....+.+.+||++|+++++. ++||
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 95 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 95 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEE
Confidence 333446999999999999999998888889999877643 345678999999999998776 9999
Q ss_pred ECCChhhHHHHHHHHHHHHHh
Q psy2967 80 DAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 80 d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|++++.+|+++..|+.++.+.
T Consensus 96 d~~~~~s~~~~~~~~~~~~~~ 116 (221)
T 3gj0_A 96 DVTSRVTYKNVPNWHRDLVRV 116 (221)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988763
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=104.65 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=69.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++.. +....+.+.+||++|+++++. |+|||++
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~ 108 (193)
T 2oil_A 29 VLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT 108 (193)
T ss_dssp EEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECC
Confidence 346999999999999999999988888998876642 345678999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 109 ~~~s~~~~~~~l~~i~~ 125 (193)
T 2oil_A 109 KHQTYAVVERWLKELYD 125 (193)
T ss_dssp CHHHHHTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 59
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=9.4e-18 Score=106.14 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=64.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++. . +++..+.+.+||++|+++++. |+|||++
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 104 (191)
T 2a5j_A 25 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 104 (191)
T ss_dssp EEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECC
Confidence 34599999999999999999988888888885543 3 344568999999999998766 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++++|+++..|+.++.+
T Consensus 105 ~~~s~~~~~~~l~~i~~ 121 (191)
T 2a5j_A 105 RRETFNHLTSWLEDARQ 121 (191)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 60
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=1.7e-17 Score=104.66 Aligned_cols=80 Identities=19% Similarity=0.420 Sum_probs=68.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+++...+.+|++.++. . .....+.+.+||++|+++++. ++|||+++
T Consensus 27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 106 (189)
T 2gf9_A 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN 106 (189)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC
Confidence 3699999999999999999998888899886653 2 334568999999999988765 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+.+..|+.++.+
T Consensus 107 ~~s~~~~~~~~~~i~~ 122 (189)
T 2gf9_A 107 QESFAAVQDWATQIKT 122 (189)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=2.4e-17 Score=104.99 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++.. + ....+.+.+||++|+++++. |+|||++
T Consensus 12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (207)
T 1vg8_A 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT 91 (207)
T ss_dssp EEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECC
Confidence 346999999999999999999988899999876643 3 34568999999999988765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 92 ~~~s~~~~~~~~~~~~~ 108 (207)
T 1vg8_A 92 APNTFKTLDSWRDEFLI 108 (207)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 62
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=3.2e-17 Score=102.89 Aligned_cols=81 Identities=25% Similarity=0.503 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEe--cC---------cEEEEEEeeCCCCccce---------
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KIT--KG---------NVTIKVWDIGGQPRFRS--------- 75 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~--~~---------~~~~~i~D~~G~~~~~~--------- 75 (101)
+.+|++|||||||++++..+.+...+.||++.++. .+. .. .+.+.+||++|+++++.
T Consensus 15 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 94 (195)
T 3bc1_A 15 LALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDA 94 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTC
T ss_pred EEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCC
Confidence 34699999999999999999998888999997765 232 22 68999999999988765
Q ss_pred ---EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 ---IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 ---i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|+|||++++.+++++..|+.++..
T Consensus 95 d~~i~v~d~~~~~s~~~~~~~~~~i~~ 121 (195)
T 3bc1_A 95 MGFLLLFDLTNEQSFLNVRNWISQLQM 121 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=3.9e-17 Score=103.00 Aligned_cols=82 Identities=18% Similarity=0.368 Sum_probs=69.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCc-------------------------------------
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGN------------------------------------- 59 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~------------------------------------- 59 (101)
+.+|+++||||||++++.++.+...+.||++.++. .+...+
T Consensus 11 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (208)
T 3clv_A 11 VLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENL 90 (208)
T ss_dssp EEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTT
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCcc
Confidence 34699999999999999999999889999986653 233222
Q ss_pred --EEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967 60 --VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 60 --~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i~~~ 100 (101)
..+.+||++|++++.. ++|||++++.+++++..|+.++.+.
T Consensus 91 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~ 145 (208)
T 3clv_A 91 CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS 145 (208)
T ss_dssp CEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh
Confidence 8999999999987765 9999999999999999999988753
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=1.9e-17 Score=103.49 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=68.4
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +.+..+.+.+||++|+++++. ++|||+++
T Consensus 9 ~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 88 (186)
T 1mh1_A 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS 88 (186)
T ss_dssp EEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC
Confidence 346999999999999999999988889998866532 455678899999999988765 89999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+.+|+++. .|+..+.+
T Consensus 89 ~~s~~~~~~~~~~~~~~ 105 (186)
T 1mh1_A 89 PASFENVRAKWYPEVRH 105 (186)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999997 68887764
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=105.08 Aligned_cols=80 Identities=18% Similarity=0.373 Sum_probs=61.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++..+.+...+.+|++.++. .+ .+..+.+.+||++|+++++. |+|||+++
T Consensus 31 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp EECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 3599999999999999999988888899886653 33 34458999999999998765 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+..+..
T Consensus 111 ~~s~~~~~~~~~~i~~ 126 (192)
T 2il1_A 111 KETFDDLPKWMKMIDK 126 (192)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887754
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.71 E-value=3.3e-17 Score=102.68 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=66.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++.++.+...+.+|.+..+.. +++..+.+.+||++|+++++. ++|||+++
T Consensus 8 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (189)
T 4dsu_A 8 VVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN 87 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 346999999999999999999988888888755533 445668899999999988766 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+.+..|+.++.+
T Consensus 88 ~~s~~~~~~~~~~~~~ 103 (189)
T 4dsu_A 88 TKSFEDIHHYREQIKR 103 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988875
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.71 E-value=1.7e-17 Score=105.47 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=40.5
Q ss_pred EeccCCCcceeeeeccccC--cCCCCCCCccceEE--EEEe--cC--cEEEEEEeeCCCCccce------------EEEE
Q psy2967 20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNM--RKIT--KG--NVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~--~~~~--~~--~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
.+|++|||||||++++..+ .+...+.||++.++ ..+. +. .+.+.+||++|+++++. |+||
T Consensus 25 v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (208)
T 2yc2_C 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVF 104 (208)
T ss_dssp EC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEE
Confidence 3599999999999999998 88888999998554 3343 33 78999999999987654 9999
Q ss_pred ECCChhhHHHHHHHHHHHHHh
Q psy2967 80 DAADTDKLEASRNELHALIEK 100 (101)
Q Consensus 80 d~~~~~sf~~~~~~~~~i~~~ 100 (101)
|++++.+|+++..|+.++.+.
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~ 125 (208)
T 2yc2_C 105 DVSSMESFESCKAWFELLKSA 125 (208)
T ss_dssp ETTCHHHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=1.7e-17 Score=103.10 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=68.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|+++||||||++++..+.+...+.+|.+.++. . +....+.+.+||++|+++++. ++|||+++
T Consensus 20 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 99 (179)
T 1z0f_A 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 99 (179)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC
Confidence 3599999999999999999998888899886543 2 344568999999999988765 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+++++..|+.++..
T Consensus 100 ~~s~~~~~~~~~~~~~ 115 (179)
T 1z0f_A 100 RSTYNHLSSWLTDARN 115 (179)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 69
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.3e-17 Score=108.03 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=62.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||++++..+.+...+.||++.++. .+. +..+.+.+||++|+++++. |+|||++
T Consensus 17 ~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~ 96 (223)
T 3cpj_B 17 VLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS 96 (223)
T ss_dssp EEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-C
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCC
Confidence 34699999999999999999998888898885553 333 4458999999999998766 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 97 ~~~s~~~~~~~l~~i~~ 113 (223)
T 3cpj_B 97 KSSSYENCNHWLSELRE 113 (223)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=106.75 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=55.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +++..+.+.+||++|+++++. ++|||+++
T Consensus 38 ~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 117 (214)
T 2j1l_A 38 VLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117 (214)
T ss_dssp EEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTC
T ss_pred EEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC
Confidence 345999999999999999999988888998866532 445668999999999987765 99999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+.+|+++. .|+.++.+
T Consensus 118 ~~s~~~~~~~~~~~~~~ 134 (214)
T 2j1l_A 118 PNSFDNIFNRWYPEVNH 134 (214)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997 68887764
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=106.38 Aligned_cols=81 Identities=17% Similarity=0.364 Sum_probs=60.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++. . +++..+.+.+||++|+++++. |+|||++
T Consensus 32 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~ 111 (199)
T 2p5s_A 32 VLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVT 111 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECC
Confidence 34699999999999999999988888898886543 2 445568899999999998765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+..+.+
T Consensus 112 ~~~s~~~~~~~~~~i~~ 128 (199)
T 2p5s_A 112 CEKSFLNIREWVDMIED 128 (199)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 99999999999987754
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=1.4e-17 Score=103.62 Aligned_cols=81 Identities=21% Similarity=0.426 Sum_probs=60.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEe---cCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKIT---KGNVTIKVWDIGGQPRFRS------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~~~~i~D~~G~~~~~~------------i~v~d~ 81 (101)
+.+|++|||||||++++..+.+...+.||++.++ ..+. ...+.+.+||++|+++++. ++|||+
T Consensus 12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (182)
T 1ky3_A 12 IILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDV 91 (182)
T ss_dssp EEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEET
T ss_pred EEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEEC
Confidence 3469999999999999999998888889887544 3333 3468999999999988765 999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++.+|+++..|+.++..
T Consensus 92 ~~~~s~~~~~~~~~~~~~ 109 (182)
T 1ky3_A 92 TNASSFENIKSWRDEFLV 109 (182)
T ss_dssp TCHHHHHTHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.8e-17 Score=101.36 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=68.2
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.||++..+.. .....+.+.+||++|+++++. ++|||++++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR 87 (172)
T ss_dssp EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH
Confidence 46999999999999999999888888998876643 344568899999999997765 999999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
.+++++..|+.++.+
T Consensus 88 ~~~~~~~~~~~~i~~ 102 (172)
T 2erx_A 88 QSLEELKPIYEQICE 102 (172)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877764
No 74
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.9e-17 Score=103.64 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=68.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. ++...+.+.+||++|+++ +. ++|||+++
T Consensus 32 ~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~ 110 (196)
T 2atv_A 32 AIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD 110 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC
Confidence 345999999999999999999988899999877643 345568999999999986 22 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+++|+++..|+.++.+
T Consensus 111 ~~s~~~~~~~~~~i~~ 126 (196)
T 2atv_A 111 RGSFEEVLPLKNILDE 126 (196)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=6.1e-18 Score=105.61 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=54.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +.+..+.+.+||++|+++++. ++|||+++
T Consensus 12 ~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (182)
T 3bwd_D 12 VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 91 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC
Confidence 346999999999999999999988889998865532 445668889999999988765 99999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+.+|+++. .|+.++..
T Consensus 92 ~~s~~~~~~~~~~~~~~ 108 (182)
T 3bwd_D 92 KASYENVSKKWIPELKH 108 (182)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997 68887765
No 76
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.69 E-value=2.8e-17 Score=101.26 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=53.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++.+..+. ...++.+..+. .+....+.+.+||++|+++++. ++|||++++
T Consensus 7 ~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (166)
T 3q72_A 7 LLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK 85 (166)
T ss_dssp EEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCH
Confidence 3599999999999999976654 44566665543 2556678999999999998765 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++..|+.++.+
T Consensus 86 ~s~~~~~~~~~~~~~ 100 (166)
T 3q72_A 86 GSFEKASELRVQLRR 100 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.69 E-value=5.9e-17 Score=103.77 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=67.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.+|++..+.. +++..+.+.+||++|+++++. ++|||+++
T Consensus 34 ~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 113 (204)
T 4gzl_A 34 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 113 (204)
T ss_dssp EEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC
Confidence 346999999999999999999988889998766542 456678899999999988765 99999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+.+|+++. .|+..+.+
T Consensus 114 ~~s~~~~~~~~~~~~~~ 130 (204)
T 4gzl_A 114 PASFENVRAKWYPEVRH 130 (204)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997 78877764
No 78
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=105.42 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=62.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCccce-------------EEEEEC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRFRS-------------IYMVDA 81 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~ 81 (101)
+.+|++|||||||+++|.+..+...+.|+.+.+. .. +++..+.+.+||++|+++++. |+|||+
T Consensus 27 ~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~ 106 (195)
T 3cbq_A 27 MLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV 106 (195)
T ss_dssp EEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEET
T ss_pred EEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEEC
Confidence 3469999999999999986554433445544322 22 455678999999999987543 889999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++++|+++..|+.++.+
T Consensus 107 ~~~~s~~~~~~~~~~i~~ 124 (195)
T 3cbq_A 107 TDRRSFSKVPETLLRLRA 124 (195)
T ss_dssp TCHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999998865
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=7.9e-17 Score=98.56 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=68.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.+|.+..+.. +....+.+.+||++|+++++. ++|||+++
T Consensus 7 ~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (166)
T 2ce2_X 7 VVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN 86 (166)
T ss_dssp EEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC
Confidence 346999999999999999999888888888866532 345568899999999987665 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+++++..|+.++.+
T Consensus 87 ~~~~~~~~~~~~~i~~ 102 (166)
T 2ce2_X 87 TKSFEDIHQYREQIKR 102 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=4.1e-17 Score=104.28 Aligned_cols=81 Identities=21% Similarity=0.453 Sum_probs=68.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|+++||||||++++..+.+...+.||++.++. .+. +..+.+.+||++|+++++. ++|||++
T Consensus 24 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 103 (213)
T 3cph_A 24 LLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT 103 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence 34699999999999999999988888899886553 333 3448999999999988775 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 104 ~~~s~~~~~~~~~~i~~ 120 (213)
T 3cph_A 104 DERTFTNIKQWFKTVNE 120 (213)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 81
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=5e-17 Score=104.11 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=61.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. +.+..+.+.+||++|+++++. ++|||+++
T Consensus 29 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (207)
T 2fv8_A 29 VVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS 108 (207)
T ss_dssp EEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC
Confidence 345999999999999999999988888998876632 344568999999999987765 89999999
Q ss_pred hhhHHHH-HHHHHHHHH
Q psy2967 84 TDKLEAS-RNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~-~~~~~~i~~ 99 (101)
+++|+++ ..|+..+.+
T Consensus 109 ~~s~~~~~~~~~~~~~~ 125 (207)
T 2fv8_A 109 PDSLENIPEKWVPEVKH 125 (207)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 678877654
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=105.70 Aligned_cols=81 Identities=20% Similarity=0.444 Sum_probs=66.9
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|++.++. .+ .+..+.+.+||++|+++++. ++|||++
T Consensus 37 ~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 116 (199)
T 3l0i_B 37 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 116 (199)
T ss_dssp EEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CC
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECC
Confidence 34699999999999999999988877888775543 33 34458999999999988765 8999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 117 ~~~s~~~~~~~~~~i~~ 133 (199)
T 3l0i_B 117 DQESFNNVKQWLQEIDR 133 (199)
T ss_dssp CSHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 83
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=106.21 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=57.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.||++.++. .+ .+..+.+.+||++|+++++. |+|||++
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 108 (200)
T 2o52_A 29 LVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 108 (200)
T ss_dssp EEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETT
T ss_pred EEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECc
Confidence 34699999999999999999998888888885543 33 34458999999999987665 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++.+|+++..|+.++..
T Consensus 109 ~~~s~~~~~~~~~~~~~ 125 (200)
T 2o52_A 109 SRETYNSLAAWLTDART 125 (200)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=8.8e-17 Score=103.37 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=69.2
Q ss_pred eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEE---e--cCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI---T--KGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~---~--~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
.-+.+|++|||||||++++.++.+...+.+|.+...... . ...+.+.+||++|+++++. |+||
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFF 92 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEE
Confidence 334469999999999999999998888889988766432 2 2238999999999988765 9999
Q ss_pred ECCChhhHHHHHHHHHHHHH
Q psy2967 80 DAADTDKLEASRNELHALIE 99 (101)
Q Consensus 80 d~~~~~sf~~~~~~~~~i~~ 99 (101)
|++++.+|+++..|+.++..
T Consensus 93 d~~~~~s~~~~~~~~~~~~~ 112 (218)
T 4djt_A 93 DVTSRITCQNLARWVKEFQA 112 (218)
T ss_dssp ETTCHHHHHTHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.68 E-value=4.1e-17 Score=104.08 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=67.6
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++.++. . +.+..+.+.+||++|+++++. ++|||+++
T Consensus 29 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (201)
T 2gco_A 29 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 108 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC
Confidence 33599999999999999999998888999886653 2 345568999999999987765 99999999
Q ss_pred hhhHHHH-HHHHHHHHH
Q psy2967 84 TDKLEAS-RNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~-~~~~~~i~~ 99 (101)
+++|+++ ..|+..+.+
T Consensus 109 ~~s~~~~~~~~~~~~~~ 125 (201)
T 2gco_A 109 PDSLENIPEKWTPEVKH 125 (201)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999 678777654
No 86
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=1.3e-16 Score=100.51 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=63.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.+|.+..+.. +....+.+.+||++|++++.. ++|||+++
T Consensus 25 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 104 (190)
T 3con_A 25 VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN 104 (190)
T ss_dssp EEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTC
T ss_pred EEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC
Confidence 345999999999999999999888888888866542 344568899999999987655 89999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+.++..
T Consensus 105 ~~s~~~~~~~~~~i~~ 120 (190)
T 3con_A 105 SKSFADINLYREQIKR 120 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=6e-18 Score=107.04 Aligned_cols=81 Identities=20% Similarity=0.428 Sum_probs=69.5
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+...+.+|.+.++. . +....+.+.+||++|+++++. ++|||++
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 106 (191)
T 3dz8_A 27 LIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 106 (191)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETT
T ss_pred EEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECc
Confidence 34699999999999999999988888888875543 2 456789999999999987765 9999999
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy2967 83 DTDKLEASRNELHALIE 99 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~ 99 (101)
++++|+++..|+.++..
T Consensus 107 ~~~s~~~~~~~~~~i~~ 123 (191)
T 3dz8_A 107 NEESFNAVQDWATQIKT 123 (191)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 88
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.68 E-value=2.1e-17 Score=104.15 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=57.4
Q ss_pred EeccCCCcceeeeeccccC--cCCCCCCCccceEEEEE-------ecCcEEEEEEeeCCCCccce------------EEE
Q psy2967 20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNMRKI-------TKGNVTIKVWDIGGQPRFRS------------IYM 78 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~------------i~v 78 (101)
.+|++|||||||++++.+. .+...+.||++.++... ....+.+.+||++|+++++. ++|
T Consensus 7 ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 86 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAV 86 (184)
T ss_dssp EESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEE
Confidence 4699999999999999984 56667889999887542 23578999999999987665 789
Q ss_pred EECCCh-hhHHHHHHHHHHHHH
Q psy2967 79 VDAADT-DKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~~~-~sf~~~~~~~~~i~~ 99 (101)
||++++ .+|+++..|+.++..
T Consensus 87 ~d~~~~~~s~~~~~~~~~~~~~ 108 (184)
T 2zej_A 87 YDLSKGQAEVDAMKPWLFNIKA 108 (184)
T ss_dssp EEGGGCHHHHHTHHHHHHHHHH
T ss_pred EeCCcchhHHHHHHHHHHHHHh
Confidence 999997 589999999998764
No 89
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.67 E-value=5.4e-17 Score=100.19 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=54.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRFRS-------------IYMVDAA 82 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~~ 82 (101)
.+|++|||||||++++.+..+...+.++.+.+. .. +++..+.+.+||++|+++++. ++|||++
T Consensus 7 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT 86 (169)
T ss_dssp EECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence 369999999999999987766655444444332 22 445568999999999987653 9999999
Q ss_pred ChhhHHHHHHHHHHHHHh
Q psy2967 83 DTDKLEASRNELHALIEK 100 (101)
Q Consensus 83 ~~~sf~~~~~~~~~i~~~ 100 (101)
++++|+++..|+.++.+.
T Consensus 87 ~~~s~~~~~~~~~~~~~~ 104 (169)
T 3q85_A 87 DRRSFSKVPETLLRLRAG 104 (169)
T ss_dssp CHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 999999999999988763
No 90
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=6.8e-17 Score=102.18 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=68.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.||++..+.. .+...+.+.+||++|+++++. ++|||+++
T Consensus 12 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (199)
T 2gf0_A 12 VVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS 91 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC
Confidence 346999999999999999999988888998876643 345568999999999987765 99999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
+.+|+++..|+..+.+
T Consensus 92 ~~s~~~~~~~~~~i~~ 107 (199)
T 2gf0_A 92 KQSLEELGPIYKLIVQ 107 (199)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888876654
No 91
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=110.46 Aligned_cols=80 Identities=31% Similarity=0.625 Sum_probs=66.8
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK 86 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s 86 (101)
+.+|+++||||||++++..+.+.+ ..||++..+..+..+++.+.+|||+|+++++. |+|||++++++
T Consensus 169 ~ivG~~~vGKSsLl~~l~~~~~~~-~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s 247 (329)
T 3o47_A 169 LMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 247 (329)
T ss_dssp EEEESTTSSHHHHHHHTCSSCCEE-EEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS
T ss_pred EEECCCCccHHHHHHHHhCCCCCC-cccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH
Confidence 346999999999999999998874 45899999888888999999999999998876 99999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2967 87 LEASRNELHALIE 99 (101)
Q Consensus 87 f~~~~~~~~~i~~ 99 (101)
|+++..|+.+++.
T Consensus 248 ~~~~~~~~~~~~~ 260 (329)
T 3o47_A 248 VNEAREELMRMLA 260 (329)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888764
No 92
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=1.8e-16 Score=113.32 Aligned_cols=79 Identities=42% Similarity=0.696 Sum_probs=71.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
.+|.+|||||||++++..+++. .+.||++..+..+..+++.+.+|||+|+++++. |+|||++++++|
T Consensus 327 lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~ 405 (497)
T 3lvq_E 327 MLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI 405 (497)
T ss_dssp EECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGH
T ss_pred EEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHH
Confidence 3599999999999999999876 577899999988999999999999999988765 999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2967 88 EASRNELHALIE 99 (101)
Q Consensus 88 ~~~~~~~~~i~~ 99 (101)
+++..|+.++++
T Consensus 406 ~~~~~~~~~~~~ 417 (497)
T 3lvq_E 406 DEARQELHRIIN 417 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 93
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=2.1e-17 Score=113.51 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=52.5
Q ss_pred EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCCccc------e---------EEEEEC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR------S---------IYMVDA 81 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~---------i~v~d~ 81 (101)
.+|++|||||||++++.++.+.. .+.||+|+++..+ ...++++||||+||++|+ . |+|||+
T Consensus 4 llGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di 82 (331)
T 3r7w_B 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS 82 (331)
T ss_dssp EECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence 46999999999999887654432 3679999888776 356999999999999984 1 999999
Q ss_pred CCh
Q psy2967 82 ADT 84 (101)
Q Consensus 82 ~~~ 84 (101)
+++
T Consensus 83 td~ 85 (331)
T 3r7w_B 83 QDE 85 (331)
T ss_dssp SSC
T ss_pred Cch
Confidence 998
No 94
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=2.2e-17 Score=106.11 Aligned_cols=80 Identities=28% Similarity=0.474 Sum_probs=67.3
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecC----------cEEEEEEeeCCCCccce---------
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKG----------NVTIKVWDIGGQPRFRS--------- 75 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~----------~~~~~i~D~~G~~~~~~--------- 75 (101)
+.+|+++||||||++++..+.+...+.+|++.++.. +... .+.+.+||++|+++++.
T Consensus 29 ~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 108 (217)
T 2f7s_A 29 LALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDA 108 (217)
T ss_dssp EEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTC
T ss_pred EEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCC
Confidence 346999999999999999999988888998876532 3333 68999999999987765
Q ss_pred ---EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 ---IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 ---i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|||++++.+|+++..|+.++.
T Consensus 109 d~iilV~D~~~~~s~~~~~~~l~~i~ 134 (217)
T 2f7s_A 109 MGFLLMFDLTSQQSFLNVRNWMSQLQ 134 (217)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHTCC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 95
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.66 E-value=3.4e-16 Score=99.34 Aligned_cols=80 Identities=18% Similarity=0.333 Sum_probs=67.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++.+..+...+.||++.++. . +++..+.+.+||++|+++++. ++|||+++
T Consensus 34 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 113 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113 (191)
T ss_dssp EEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence 3699999999999999999988889999987663 2 344557888999999987655 88999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
..+|+++..|+.++.+
T Consensus 114 ~~s~~~~~~~~~~~~~ 129 (191)
T 1oix_A 114 HLTYENVERWLKELRD 129 (191)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999889877653
No 96
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=97.97 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=55.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCcc--ce------------EEEEEC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRF--RS------------IYMVDA 81 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~--~~------------i~v~d~ 81 (101)
.+|++|||||||++++.++.+... .++.+.+. .. +++..+.+.+||++|++++ +. ++|||+
T Consensus 9 i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~ 87 (175)
T 2nzj_A 9 LLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI 87 (175)
T ss_dssp EECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEET
T ss_pred EECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEEC
Confidence 469999999999999998887643 34555443 22 4455678999999999873 22 999999
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy2967 82 ADTDKLEASRNELHALIE 99 (101)
Q Consensus 82 ~~~~sf~~~~~~~~~i~~ 99 (101)
+++.+|+++..|+.++.+
T Consensus 88 ~~~~s~~~~~~~~~~l~~ 105 (175)
T 2nzj_A 88 ADRGSFESASELRIQLRR 105 (175)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 97
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.64 E-value=3.3e-16 Score=99.75 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=64.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
.+|++|||||||++++.+..+...+.||++.++. . +.+..+.+.+||++|+++++. ++|||+++
T Consensus 10 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK 89 (199)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC
Confidence 3699999999999999999988888899886553 2 345568899999999988765 88999999
Q ss_pred hhhHHHHHHHHHHHHH
Q psy2967 84 TDKLEASRNELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~~~~~~i~~ 99 (101)
..+|+++..|+.++..
T Consensus 90 ~~s~~~~~~~~~~~~~ 105 (199)
T 2f9l_A 90 HLTYENVERWLKELRD 105 (199)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877653
No 98
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.63 E-value=1.2e-16 Score=100.61 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=61.7
Q ss_pred eEeccCCCcceeeeeccccCcCCCC-----------CCCccceEEEE-----EecCcEEEEEEeeCCCCccce-------
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQD-----------MIPTVGFNMRK-----ITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~-----------~~~t~~~~~~~-----~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+.+|++|||||||+ +++.+.+... +.||++.++.. +++..+.+.+||++|+++++.
T Consensus 18 ~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (198)
T 3t1o_A 18 VYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILR 96 (198)
T ss_dssp EEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTT
T ss_pred EEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHh
Confidence 34699999999999 5555666655 45677777643 345678999999999998776
Q ss_pred -----EEEEECC------ChhhHHHHHHHHHHH
Q psy2967 76 -----IYMVDAA------DTDKLEASRNELHAL 97 (101)
Q Consensus 76 -----i~v~d~~------~~~sf~~~~~~~~~i 97 (101)
|+|||++ +.++|+++..|+.++
T Consensus 97 ~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~ 129 (198)
T 3t1o_A 97 GVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129 (198)
T ss_dssp TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence 9999999 678888998998876
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.62 E-value=8.5e-16 Score=103.94 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=68.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~ 83 (101)
+.+|++|||||||++++..+.+...+.+|++..+.. +++..+.+.+||++|+++++. ++|||+++
T Consensus 159 ~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 238 (332)
T 2wkq_A 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 238 (332)
T ss_dssp EEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC
Confidence 446999999999999999999988899999866643 345567888999999988765 89999999
Q ss_pred hhhHHHHH-HHHHHHHH
Q psy2967 84 TDKLEASR-NELHALIE 99 (101)
Q Consensus 84 ~~sf~~~~-~~~~~i~~ 99 (101)
+.+|+++. .|+..+..
T Consensus 239 ~~s~~~~~~~~~~~~~~ 255 (332)
T 2wkq_A 239 PASFHHVRAKWYPEVRH 255 (332)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999997 68877764
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.62 E-value=7.2e-16 Score=104.77 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=63.7
Q ss_pred EeccCCCcceeeeeccccC--cCCC-CCCCccceEEEEEe-cCcEEEEEEeeCCCCcc-----ce------------EEE
Q psy2967 20 NMRKITKGNVTIWPVPLSG--QFSQ-DMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-----RS------------IYM 78 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--~~~~-~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----~~------------i~v 78 (101)
.+|++|||||||++++.++ .+.. .+.+|++..+..+. .+++.+.+||++|++++ +. |+|
T Consensus 8 lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V 87 (307)
T 3r7w_A 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHV 87 (307)
T ss_dssp EECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEE
T ss_pred EECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEE
Confidence 3699999999999999877 4432 57899998887655 35899999999999987 22 999
Q ss_pred EECCChhhHHHHHHHHHHH
Q psy2967 79 VDAADTDKLEASRNELHAL 97 (101)
Q Consensus 79 ~d~~~~~sf~~~~~~~~~i 97 (101)
||++++++|+++..|...+
T Consensus 88 ~D~t~~~s~~~l~~~~~~l 106 (307)
T 3r7w_A 88 FDVESTEVLKDIEIFAKAL 106 (307)
T ss_dssp EETTCSCHHHHHHHHHHHH
T ss_pred EECCChhhHHHHHHHHHHH
Confidence 9999999999997775544
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=2.9e-17 Score=104.79 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=66.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|++|||||||++++..+.+...+.+|++..+.. +++..+.+.+||++|+++++. ++|||++++
T Consensus 35 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (204)
T 3th5_A 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 114 (204)
Confidence 35999999999999999999988888888765532 456678899999999988765 899999999
Q ss_pred hhHHHHH-HHHHHHHH
Q psy2967 85 DKLEASR-NELHALIE 99 (101)
Q Consensus 85 ~sf~~~~-~~~~~i~~ 99 (101)
.+|+++. .|+..+..
T Consensus 115 ~s~~~~~~~~~~~l~~ 130 (204)
T 3th5_A 115 ASFENVRAKWYPEVRH 130 (204)
Confidence 9999997 78776653
No 102
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=7.3e-16 Score=99.95 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=60.3
Q ss_pred ceeee-EeccCCCcceeeeeccccCc--CCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCc-cce-----------
Q psy2967 15 PTVGF-NMRKITKGNVTIWPVPLSGQ--FSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPR-FRS----------- 75 (101)
Q Consensus 15 ~~~g~-~vG~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~-~~~----------- 75 (101)
+.+.+ .+|++|||||||+++|.+.. +...+ ++++.++ .. +++..+.+.+||++|++. ++.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 33444 36999999999999998643 44444 3455433 22 445567889999999886 221
Q ss_pred -EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|+|||+++++||+++..|+.++.+
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~ 139 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRR 139 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887753
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.57 E-value=4.1e-15 Score=94.51 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=55.6
Q ss_pred EeccCCCcceeeeeccccC--cCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCcc-ce------------EEEEE
Q psy2967 20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRF-RS------------IYMVD 80 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~-~~------------i~v~d 80 (101)
.+|++|||||||+++|.+. .+...+ ++++.++ .. +++..+.+.+||++|++.. +. ++|||
T Consensus 11 lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~d 89 (192)
T 2cjw_A 11 LIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYS 89 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEE
Confidence 4699999999999999953 344443 3455333 22 4455678899999998652 21 99999
Q ss_pred CCChhhHHHHHHHHHHHHH
Q psy2967 81 AADTDKLEASRNELHALIE 99 (101)
Q Consensus 81 ~~~~~sf~~~~~~~~~i~~ 99 (101)
+++++||+++..|+..+.+
T Consensus 90 v~~~~s~~~~~~~~~~l~~ 108 (192)
T 2cjw_A 90 ITDRASFEKASELRIQLRR 108 (192)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999877654
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.55 E-value=7.7e-15 Score=94.02 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=60.2
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecC---cEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKG---NVTIKVWDIGGQPRFRS-------------IYMVDAA 82 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-------------i~v~d~~ 82 (101)
+.+|++|||||||++++..+.+.+.+.++ ..++..+..+ .+.+.+||++|+++++. |+|||++
T Consensus 11 ~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~ 89 (214)
T 2fh5_B 11 LFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSA 89 (214)
T ss_dssp EEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECC
Confidence 34699999999999999999988777654 4444444333 68999999999987653 9999999
Q ss_pred Chh-hHHHHHHHHHHHH
Q psy2967 83 DTD-KLEASRNELHALI 98 (101)
Q Consensus 83 ~~~-sf~~~~~~~~~i~ 98 (101)
+.+ ++.++..|+.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~ 106 (214)
T 2fh5_B 90 AFQREVKDVAEFLYQVL 106 (214)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 964 5777766665543
No 105
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.4e-15 Score=93.21 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=56.7
Q ss_pred EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCCccce----------------EEEEE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVD 80 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------------i~v~d 80 (101)
.+|++|||||||++++..+.+.. .+.|+.+. ......+.+||++|++.++. ++|||
T Consensus 53 vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d 127 (193)
T 2ged_A 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 127 (193)
T ss_dssp EECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEE
Confidence 46999999999999999887654 23333332 23667899999999988753 89999
Q ss_pred CC-ChhhHHHHHHHHHHHHH
Q psy2967 81 AA-DTDKLEASRNELHALIE 99 (101)
Q Consensus 81 ~~-~~~sf~~~~~~~~~i~~ 99 (101)
++ ++++|.++..|+.++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (193)
T 2ged_A 128 STVDPKKLTTTAEFLVDILS 147 (193)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHh
Confidence 99 99999999999988764
No 106
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=5.9e-15 Score=94.78 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=61.4
Q ss_pred EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCCccce----------------EEEEE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVD 80 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------------i~v~d 80 (101)
.+|++|||||||++++..+.+.. .+.|+++.. .....+.+||++|+++++. |+|||
T Consensus 17 ~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D 91 (218)
T 1nrj_B 17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 91 (218)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEE
Confidence 46999999999999999887654 345554432 2667899999999988754 89999
Q ss_pred CC-ChhhHHHHHHHHHHHHH
Q psy2967 81 AA-DTDKLEASRNELHALIE 99 (101)
Q Consensus 81 ~~-~~~sf~~~~~~~~~i~~ 99 (101)
.+ ++++|.++..|+.++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~ 111 (218)
T 1nrj_B 92 STVDPKKLTTTAEFLVDILS 111 (218)
T ss_dssp TTSCTTCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh
Confidence 99 99999999999988875
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.48 E-value=2.1e-14 Score=91.15 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=55.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE------EEEe-cCcEEEEEEeeCCCCccc-------e--------EE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM------RKIT-KGNVTIKVWDIGGQPRFR-------S--------IY 77 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~------~~~~-~~~~~~~i~D~~G~~~~~-------~--------i~ 77 (101)
.+|++|||||||++++.+ .+... +|++.+. ..+. +..+.+.+||++|+++|. . |+
T Consensus 25 ~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~ 101 (196)
T 3llu_A 25 LMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY 101 (196)
T ss_dssp EEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEE
T ss_pred EECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEE
Confidence 359999999999997765 34333 4444332 1232 567999999999998763 2 99
Q ss_pred EEECCCh--hhHHHHHHHHHHHH
Q psy2967 78 MVDAADT--DKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~~~--~sf~~~~~~~~~i~ 98 (101)
|||++++ ++++.+..|+.++.
T Consensus 102 v~d~~~~~~~~~~~~~~~l~~~~ 124 (196)
T 3llu_A 102 VIDAQDDYMEALTRLHITVSKAY 124 (196)
T ss_dssp EEETTSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCchHHHHHHHHHHHHHHH
Confidence 9999998 77888888888764
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.47 E-value=4.8e-14 Score=87.46 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=55.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccce------------EEEEECCC--
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD-- 83 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~-- 83 (101)
.+|++|||||||++++..+.+...+.+++..++ ..+...+..+.+||++|+++++. ++|||+++
T Consensus 13 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 92 (178)
T 2lkc_A 13 IMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV 92 (178)
T ss_dssp EESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC
T ss_pred EECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 469999999999999999988877666655333 34556677889999999988765 89999998
Q ss_pred -hhhHHHH
Q psy2967 84 -TDKLEAS 90 (101)
Q Consensus 84 -~~sf~~~ 90 (101)
+++++.+
T Consensus 93 ~~~~~~~l 100 (178)
T 2lkc_A 93 MPQTVEAI 100 (178)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 4555444
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.43 E-value=5.8e-13 Score=82.35 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=52.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccce--EEEEEecCcEEEEEEeeCCCCccc----------------e----EE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR----------------S----IY 77 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~----------------~----i~ 77 (101)
.+|++|||||||++++.+..+.....|+... ....+...+..+.+|||+|+++++ . ++
T Consensus 8 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (165)
T 2wji_A 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN 87 (165)
T ss_dssp EECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEE
Confidence 3699999999999999987765555554432 333455567899999999998763 1 88
Q ss_pred EEECCChhhHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|.++.++ ...|+.++.
T Consensus 88 v~D~~~~~~---~~~~~~~~~ 105 (165)
T 2wji_A 88 IVDATALER---NLYLTLQLM 105 (165)
T ss_dssp EEETTCHHH---HHHHHHHHH
T ss_pred EecCCchhH---hHHHHHHHH
Confidence 999998654 345666654
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.40 E-value=2.8e-13 Score=84.58 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=55.8
Q ss_pred EeccCCCcceeeeeccccCcCC--CCCCCc-cceEEEEEecCcEEEEEEeeCCCCccc----------------e----E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS--QDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFR----------------S----I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~----------------~----i 76 (101)
.+|++|||||||++++....+. ..+.+| .......+...+..+.+||++|++++. . +
T Consensus 9 ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i 88 (172)
T 2gj8_A 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 88 (172)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEE
Confidence 3599999999999999987642 233332 233334455566789999999986421 1 8
Q ss_pred EEEECCChhhHHHHHHHHHHHHH
Q psy2967 77 YMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
+|||++++.+++. ..|+.++.+
T Consensus 89 ~v~D~~~~~s~~~-~~~~~~~~~ 110 (172)
T 2gj8_A 89 FMVDGTTTDAVDP-AEIWPEFIA 110 (172)
T ss_dssp EEEETTTCCCCSH-HHHCHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHHHH
Confidence 8999999998874 467776654
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.39 E-value=5e-13 Score=83.70 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=56.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceE--EEEEecCcEEEEEEeeCCCCccc-----------------e---EE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRFR-----------------S---IY 77 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~~-----------------~---i~ 77 (101)
.+|++|||||||++++.+..+.....|++..+ ...+..++..+.+||++|+++++ . ++
T Consensus 12 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (188)
T 2wjg_A 12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN 91 (188)
T ss_dssp EECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEE
Confidence 36999999999999999876655555655443 34466678999999999998763 1 77
Q ss_pred EEECCChhhHHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|+|.++ +++...|+.++.+
T Consensus 92 v~d~~~---~~~~~~~~~~~~~ 110 (188)
T 2wjg_A 92 IVDATA---LERNLYLTLQLME 110 (188)
T ss_dssp EEEGGG---HHHHHHHHHHHHT
T ss_pred Eecchh---HHHHHHHHHHHHh
Confidence 888765 5666777776653
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=91.47 Aligned_cols=85 Identities=7% Similarity=0.051 Sum_probs=57.6
Q ss_pred ceeee-EeccC---------CCcceeeeecccc---CcCCCCCCCcc-ceEEE------------------EEecCcEEE
Q psy2967 15 PTVGF-NMRKI---------TKGNVTIWPVPLS---GQFSQDMIPTV-GFNMR------------------KITKGNVTI 62 (101)
Q Consensus 15 ~~~g~-~vG~~---------~vGKtsl~~~~~~---~~~~~~~~~t~-~~~~~------------------~~~~~~~~~ 62 (101)
+.+.+ .+|++ |||||||+++|+. +.+...+.||+ +.++. .+++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 33443 35999 9999999999998 66777777775 43321 134567899
Q ss_pred EEEe-----------------------eCCCCcc--------c---------------------e----EEEEECCCh--
Q psy2967 63 KVWD-----------------------IGGQPRF--------R---------------------S----IYMVDAADT-- 84 (101)
Q Consensus 63 ~i~D-----------------------~~G~~~~--------~---------------------~----i~v~d~~~~-- 84 (101)
++|| ++|++++ + . |+|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 5555422 1 2 899999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
+||+++..|+.++.+
T Consensus 178 ~s~~~~~~~l~~i~~ 192 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYN 192 (255)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999998865
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.38 E-value=5.8e-13 Score=86.35 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=56.0
Q ss_pred EeccCCCcceeeeeccccCcCCCCCC--CccceEEEEEecCcEEEEEEeeCCC------Cc----cce-----------E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMI--PTVGFNMRKITKGNVTIKVWDIGGQ------PR----FRS-----------I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~-----------i 76 (101)
.+|++|||||||++++.++.+..... .|..............+.+||++|+ ++ +.. |
T Consensus 34 vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i 113 (228)
T 2qu8_A 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVIL 113 (228)
T ss_dssp EECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEE
Confidence 46999999999999999887753222 2334444445667799999999999 43 211 8
Q ss_pred EEEECCChhhHHH--HHHHHHHHHH
Q psy2967 77 YMVDAADTDKLEA--SRNELHALIE 99 (101)
Q Consensus 77 ~v~d~~~~~sf~~--~~~~~~~i~~ 99 (101)
+|||++++.+|+. ...|+..+.+
T Consensus 114 ~v~d~~~~~s~~~~~~~~~~~~l~~ 138 (228)
T 2qu8_A 114 FIIDISEQCGLTIKEQINLFYSIKS 138 (228)
T ss_dssp EEEETTCTTSSCHHHHHHHHHHHHT
T ss_pred EEEecccccCcchHHHHHHHHHHHH
Confidence 8999999988753 3456666543
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.37 E-value=2.9e-13 Score=97.76 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=52.5
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEE------------ecCcEEEEEEeeCCCCccce------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI------------TKGNVTIKVWDIGGQPRFRS------------ 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~------------ 75 (101)
.+|.+|||||||++++.++.+...+.||++.++... .+..+.+.+||++|++.++.
T Consensus 46 lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~i 125 (535)
T 3dpu_A 46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125 (535)
T ss_dssp EESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEE
Confidence 359999999999999999999888999999887632 23368999999999988776
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH
Q psy2967 76 IYMVDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 76 i~v~d~~~~~sf~~~~~~~~~i~~ 99 (101)
|+|||+++. +.+..|+.++.+
T Consensus 126 i~V~D~s~~---~~~~~~~~~l~~ 146 (535)
T 3dpu_A 126 MLLLDSRTD---SNKHYWLRHIEK 146 (535)
T ss_dssp EEEECGGGG---GGHHHHHHHHHH
T ss_pred EEEEeCCCc---hhHHHHHHHHHH
Confidence 889998765 455667777654
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.36 E-value=6.7e-14 Score=87.62 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=56.9
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCC-----------CCccce-------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG-----------QPRFRS------------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~------------- 75 (101)
.+|++|||||||++++.++.+...+.|++......+... .+.+||++| +++++.
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI 83 (190)
T ss_dssp EEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred EECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccC
Confidence 369999999999999999988877777766544444333 688999999 444332
Q ss_pred EEEEECCChhhHHHH-HHHHH
Q psy2967 76 IYMVDAADTDKLEAS-RNELH 95 (101)
Q Consensus 76 i~v~d~~~~~sf~~~-~~~~~ 95 (101)
++||++.|..+|.++ ..|..
T Consensus 84 ~~v~~v~d~~s~~~~~~~~~~ 104 (190)
T 2cxx_A 84 DVAVLVVDGKAAPEIIKRWEK 104 (190)
T ss_dssp CEEEEEEETTHHHHHHHHHHH
T ss_pred CEEEEEEcchhhhhHHHhhhc
Confidence 688999999999887 56754
No 116
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.29 E-value=1.8e-12 Score=86.16 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=56.2
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccc------e-----------------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFR------S----------------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~------~----------------- 75 (101)
+|.+|||||||++++.+..+.....|++..+. ..+..++..+.+||++|+..+. .
T Consensus 7 vG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ 86 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDC 86 (256)
T ss_dssp EESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSE
T ss_pred ECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCE
Confidence 69999999999999998765444445444333 3466677899999999997653 1
Q ss_pred -EEEEECCChhhHHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~~~~~ 95 (101)
|+|+|.++.+++..+..|+.
T Consensus 87 vi~VvDas~~~~~~~l~~~l~ 107 (256)
T 3iby_A 87 IINVIDACHLERHLYLTSQLF 107 (256)
T ss_dssp EEEEEEGGGHHHHHHHHHHHT
T ss_pred EEEEeeCCCchhHHHHHHHHH
Confidence 88999999888777665553
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.28 E-value=1.2e-11 Score=84.09 Aligned_cols=78 Identities=15% Similarity=0.043 Sum_probs=58.1
Q ss_pred eccCCCcceeeeeccccCcCCC--CC-CCccceEEEEEecC-cEEEEEEeeCCCCccc----------e-----------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ--DM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRFR----------S----------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~----------- 75 (101)
+|.+|||||||++++++.++.. .. ..|........... +..+.+|||+|+.... .
T Consensus 16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~ 95 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADV 95 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSE
T ss_pred ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCE
Confidence 5999999999999999887642 22 22333333334555 8999999999996654 1
Q ss_pred -EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
++|+|.++..++++...|+..+.
T Consensus 96 il~VvD~~~~~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 96 ILFMIDATEGWRPRDEEIYQNFIK 119 (308)
T ss_dssp EEEEEETTTBSCHHHHHHHHHHTG
T ss_pred EEEEEeCCCCCCchhHHHHHHHHH
Confidence 89999999999988877776654
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.27 E-value=2.5e-12 Score=78.37 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=46.4
Q ss_pred EeccCCCcceeeeeccccCcCC--CCCCC-ccceEEEEEecCcEEEEEEeeCCCCcc-------ce------------EE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRF-------RS------------IY 77 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~------------i~ 77 (101)
.+|++|||||||++++.++.+. ..+.+ |.......+...+..+.+||++|++.+ .. ++
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLF 85 (161)
T ss_dssp EECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEE
Confidence 3699999999999999987643 22222 223333446666779999999999862 11 88
Q ss_pred EEECCChhhH
Q psy2967 78 MVDAADTDKL 87 (101)
Q Consensus 78 v~d~~~~~sf 87 (101)
|||.+++.+.
T Consensus 86 v~d~~~~~~~ 95 (161)
T 2dyk_A 86 AVDGRAELTQ 95 (161)
T ss_dssp EEESSSCCCH
T ss_pred EEECCCcccH
Confidence 9999986554
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.24 E-value=9.5e-12 Score=82.68 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=54.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRS--------------------IY 77 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~--------------------i~ 77 (101)
.+|++|||||||++++.+..+.....|.+.... ..+..++..+.+||++|+..+.. ++
T Consensus 10 lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~ 89 (258)
T 3a1s_A 10 LAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL 89 (258)
T ss_dssp EECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE
Confidence 359999999999999998765433344333333 34666789999999999876531 88
Q ss_pred EEECCChhhHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|.++.++.. .|..++.
T Consensus 90 V~D~t~~~~~~---~~~~~l~ 107 (258)
T 3a1s_A 90 VADSVNPEQSL---YLLLEIL 107 (258)
T ss_dssp EEETTSCHHHH---HHHHHHH
T ss_pred EeCCCchhhHH---HHHHHHH
Confidence 99999976644 3555544
No 120
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.24 E-value=7.3e-12 Score=81.79 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=37.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCC----ccceEEEEEecCcEEEEEEeeCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIP----TVGFNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~ 70 (101)
.+|.+|||||||++++.+..+.....+ |.......+...+..+.+|||+|.
T Consensus 34 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~ 88 (239)
T 3lxx_A 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGI 88 (239)
T ss_dssp EECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred EECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCc
Confidence 369999999999999998877655444 333444456677889999999994
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.23 E-value=9.1e-12 Score=83.33 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=55.6
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccc--------------------e---
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFR--------------------S--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~--------------------~--- 75 (101)
+|.+|||||||++++.+..+.....|++..+. ..+...+..+.+||++|+..+. .
T Consensus 9 vG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ 88 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADL 88 (274)
T ss_dssp EECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSE
T ss_pred ECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCE
Confidence 59999999999999998765444444444333 3466667789999999987755 1
Q ss_pred -EEEEECCChhhHHHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEASRNELHA 96 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~~~~~~~ 96 (101)
++|+|.++.++...+..|+.+
T Consensus 89 ii~VvD~~~~~~~~~~~~~l~~ 110 (274)
T 3i8s_A 89 LINVVDASNLERNLYLTLQLLE 110 (274)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHh
Confidence 889999998776665555543
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.22 E-value=1.5e-12 Score=81.87 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=42.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCC----------CCccce------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGG----------QPRFRS------------ 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G----------~~~~~~------------ 75 (101)
.+|++|||||||++++.++.+...+.++.+.... .... +..+.+||++| ++.++.
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREEL 106 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred EECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcC
Confidence 4699999999999999998876666666653321 1221 22689999999 444332
Q ss_pred ---EEEEECCChhhHHHH
Q psy2967 76 ---IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 ---i~v~d~~~~~sf~~~ 90 (101)
++|+|++++.++.+.
T Consensus 107 ~~~i~v~d~~~~~~~~~~ 124 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDV 124 (195)
T ss_dssp EEEEEEEETTSCCCHHHH
T ss_pred CEEEEEEECCCCCCHHHH
Confidence 889999998887765
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.20 E-value=1.7e-11 Score=81.67 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce--------------------EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS--------------------IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~--------------------i~v 78 (101)
+|++|||||||++++.+..+.....|++..+.. .+..++..+.+||++|+..+.. ++|
T Consensus 9 vG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 88 (271)
T 3k53_A 9 VGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDI 88 (271)
T ss_dssp EECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEE
T ss_pred ECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEE
Confidence 599999999999999987765455565555543 4666778899999999876532 889
Q ss_pred EECCChhh
Q psy2967 79 VDAADTDK 86 (101)
Q Consensus 79 ~d~~~~~s 86 (101)
+|.++.++
T Consensus 89 ~D~~~~~~ 96 (271)
T 3k53_A 89 VDSTCLMR 96 (271)
T ss_dssp EEGGGHHH
T ss_pred ecCCcchh
Confidence 99988643
No 124
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.19 E-value=4.4e-11 Score=79.36 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=54.9
Q ss_pred eEeccCCCcceeeeeccccCcC--CCCCCC-ccceEEEEEecCcEEEEEEeeCCCCccce--------------------
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQF--SQDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFRS-------------------- 75 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~--~~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------------------- 75 (101)
..+|..|+|||||++++.+.++ ...+.+ |.......+...+..+.+|||+|++.+..
T Consensus 40 ~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~ 119 (262)
T 3def_A 40 LVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119 (262)
T ss_dssp EEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred EEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCE
Confidence 3469999999999999998774 323333 33444445677888999999999976532
Q ss_pred -EEEEECCChhhHHHH-HHHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEAS-RNELHALIE 99 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~-~~~~~~i~~ 99 (101)
++|+|+++.. +.+. ..|+..+.+
T Consensus 120 il~V~~~d~~~-~~~~~~~~~~~l~~ 144 (262)
T 3def_A 120 LLYVDRLDVYA-VDELDKQVVIAITQ 144 (262)
T ss_dssp EEEEEESSCSC-CCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCC-CCHHHHHHHHHHHH
Confidence 8888887654 4433 356555543
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.18 E-value=2.3e-11 Score=81.48 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=50.8
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccce--EEEEEecCcEEEEEEeeCCCCccce--------------------EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRS--------------------IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~v 78 (101)
+|++|||||||++++.+........|...+ ....+.. +..+.+||++|+.++.. ++|
T Consensus 9 vG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V 87 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNV 87 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEE
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEE
Confidence 699999999999999986533222232222 2233445 77899999999987641 889
Q ss_pred EECCChhhHHHHHHHHHHHH
Q psy2967 79 VDAADTDKLEASRNELHALI 98 (101)
Q Consensus 79 ~d~~~~~sf~~~~~~~~~i~ 98 (101)
+|.++.+++. .|..++.
T Consensus 88 ~D~t~~e~~~---~~~~~l~ 104 (272)
T 3b1v_A 88 VDATNLERNL---YLTTQLI 104 (272)
T ss_dssp EEGGGHHHHH---HHHHHHH
T ss_pred ecCCchHhHH---HHHHHHH
Confidence 9999876654 4555443
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.17 E-value=6e-11 Score=80.49 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=51.5
Q ss_pred eccCCCcceeeeeccccCcCCC--CCCCccceEEE-EEecCcEEEEEEeeCCCCccc--------e------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFR--------S------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~--------~------------i~ 77 (101)
+|.+|||||||++++++.++.. ....|...... .+..++..+.+|||+|+.+.+ . ++
T Consensus 13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~ 92 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW 92 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE
T ss_pred ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEE
Confidence 5999999999999999887642 22223332222 345678999999999987631 1 89
Q ss_pred EEECCChhhHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHA 96 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~ 96 (101)
|+|.+++.+.. ..|+.+
T Consensus 93 VvD~~~~~~~~--~~~i~~ 109 (301)
T 1wf3_A 93 VVDLRHPPTPE--DELVAR 109 (301)
T ss_dssp EEETTSCCCHH--HHHHHH
T ss_pred EEECCCCCChH--HHHHHH
Confidence 99999876544 345533
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.17 E-value=1.2e-11 Score=85.41 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=57.8
Q ss_pred eccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCc-EEEEEEeeCCCCc----cce---------------EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQPR----FRS---------------IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~---------------i~v 78 (101)
+|.++||||||++++....+. .++ ..|...+...+...+ ..+.+||++|... ++. |+|
T Consensus 164 vG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~V 243 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV 243 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEE
T ss_pred eCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEE
Confidence 699999999999999976532 222 245555554455443 7899999999532 111 889
Q ss_pred EECCC---hhhHHHHHHHHHHHHH
Q psy2967 79 VDAAD---TDKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~~---~~sf~~~~~~~~~i~~ 99 (101)
+|+++ +.+++++..|+.++..
T Consensus 244 vD~s~~~~~~~~~~~~~~~~eL~~ 267 (342)
T 1lnz_A 244 IDMSGLEGRDPYDDYLTINQELSE 267 (342)
T ss_dssp EESSCSSCCCHHHHHHHHHHHHHH
T ss_pred EECCcccccChHHHHHHHHHHHHH
Confidence 99999 8899999989888764
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=4.9e-11 Score=84.38 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=44.1
Q ss_pred eccCCCcceeeeeccccCcCC--CCCCC-ccceEEEEEecCcEEEEEEeeCCCCccc---------e------------E
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFR---------S------------I 76 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~------------i 76 (101)
+|.+|||||||+++++++... ..+.. |....+..+...+..+.+|||+|++... . +
T Consensus 7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il 86 (439)
T 1mky_A 7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVL 86 (439)
T ss_dssp ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEE
Confidence 699999999999999987642 22221 1223334566677889999999987421 1 8
Q ss_pred EEEECCChhhHH
Q psy2967 77 YMVDAADTDKLE 88 (101)
Q Consensus 77 ~v~d~~~~~sf~ 88 (101)
+|+|.++..+..
T Consensus 87 ~V~D~~~~~~~~ 98 (439)
T 1mky_A 87 FVVDGKRGITKE 98 (439)
T ss_dssp EEEETTTCCCHH
T ss_pred EEEECCCCCCHH
Confidence 999998866543
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.14 E-value=1.7e-10 Score=79.62 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=60.7
Q ss_pred EeccCCCcceeeeeccccCcCCCC--CCCccceEEEEEecCcEEEEEEeeCCCCccc------------------e---E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFR------------------S---I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------------------~---i 76 (101)
.+|.+|||||||++++.+..+... ...|.......+...+..+.+|||+|..... . +
T Consensus 172 lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~il 251 (357)
T 2e87_A 172 IAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLII 251 (357)
T ss_dssp EECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEE
Confidence 469999999999999998764321 2345556555666678899999999984321 1 8
Q ss_pred EEEECCChh--hHHHHHHHHHHHHH
Q psy2967 77 YMVDAADTD--KLEASRNELHALIE 99 (101)
Q Consensus 77 ~v~d~~~~~--sf~~~~~~~~~i~~ 99 (101)
+|+|+++.. ++++...|+.++.+
T Consensus 252 lV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 252 YIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp EEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred EEEeCCccccCCHHHHHHHHHHHHH
Confidence 899999887 78888889888765
No 130
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.14 E-value=1.6e-11 Score=76.86 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=48.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEEEE-EecCcEEEEEEeeCC----------CCccce-------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGG----------QPRFRS------------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~------------- 75 (101)
.+|++|||||||++++.++.+. .+.++.+..... ....+..+.+||++| ++.++.
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (195)
T 3pqc_A 28 FVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQ 106 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred EECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCce
Confidence 4699999999999999988743 455555533211 111233577999999 433332
Q ss_pred --EEEEECCChhh--HHHHHHHHHH
Q psy2967 76 --IYMVDAADTDK--LEASRNELHA 96 (101)
Q Consensus 76 --i~v~d~~~~~s--f~~~~~~~~~ 96 (101)
++|+|.++..+ ...+..|+.+
T Consensus 107 ~vi~v~d~~~~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 107 MVFLLVDGRIPPQDSDLMMVEWMKS 131 (195)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHH
Confidence 78899887644 3444455543
No 131
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.12 E-value=2.1e-10 Score=76.29 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=52.9
Q ss_pred eEeccCCCcceeeeeccccCcCC--CCCCCcc-ceEEEEEecCcEEEEEEeeCCCCccc-----------------e---
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFR-----------------S--- 75 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~~~~-----------------~--- 75 (101)
+.+|.+|+|||||++++.+..+. ..+.++. ......+...+..+.+|||+|+..+. .
T Consensus 43 ~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (270)
T 1h65_A 43 LVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV 122 (270)
T ss_dssp EEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred EEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCE
Confidence 34699999999999999987753 2222222 22223456778999999999986542 1
Q ss_pred -EEEEECCChhhHHHH-HHHHHHHH
Q psy2967 76 -IYMVDAADTDKLEAS-RNELHALI 98 (101)
Q Consensus 76 -i~v~d~~~~~sf~~~-~~~~~~i~ 98 (101)
++|+|++.. ++... ..|+..+.
T Consensus 123 il~v~~~d~~-~~~~~~~~~~~~l~ 146 (270)
T 1h65_A 123 LLYVDRLDAY-RVDNLDKLVAKAIT 146 (270)
T ss_dssp EEEEEESSCC-CCCHHHHHHHHHHH
T ss_pred EEEEEeCCCC-cCCHHHHHHHHHHH
Confidence 889888653 34433 35666554
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.11 E-value=4e-11 Score=85.91 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=39.5
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCcc-ceEEEEEecCcEEEEEEeeCCCCccce--------------------E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRS--------------------I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i 76 (101)
.+|.+|||||||++++.+.+. ...+..|. ......+..++..+.+|||+|+..++. +
T Consensus 238 ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl 317 (476)
T 3gee_A 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLIL 317 (476)
T ss_dssp EECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEE
Confidence 359999999999999998753 33333332 222244667789999999999865431 8
Q ss_pred EEEECCChhhHHH
Q psy2967 77 YMVDAADTDKLEA 89 (101)
Q Consensus 77 ~v~d~~~~~sf~~ 89 (101)
+|+|.+++.++++
T Consensus 318 ~VvD~s~~~s~~~ 330 (476)
T 3gee_A 318 YLLDLGTERLDDE 330 (476)
T ss_dssp EEEETTTCSSGGG
T ss_pred EEEECCCCcchhh
Confidence 9999999988864
No 133
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.11 E-value=8.2e-12 Score=88.35 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=53.4
Q ss_pred eccCCCcceeeeeccccC--cCCCC-------------------------------CCCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFSQD-------------------------------MIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|..++|||||++++... .+.+. ...|+...+..+...+..+.+||+
T Consensus 12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDt 91 (435)
T 1jny_A 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA 91 (435)
T ss_dssp EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEEC
Confidence 599999999999999863 33211 123444444557778899999999
Q ss_pred CCCCccce------------EEEEECCChhhHHHHHHHHHHHH
Q psy2967 68 GGQPRFRS------------IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
+|+++|.. |+|+|.++ .+|+++..|..+..
T Consensus 92 pG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~ 133 (435)
T 1jny_A 92 PGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTR 133 (435)
T ss_dssp SSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHH
T ss_pred CCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHH
Confidence 99998865 99999999 78887765544443
No 134
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.10 E-value=1e-10 Score=80.72 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=55.9
Q ss_pred ccccCcCCCC-------CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECC----------Ch
Q psy2967 34 VPLSGQFSQD-------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA----------DT 84 (101)
Q Consensus 34 ~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~----------~~ 84 (101)
|+....+.+. +.||+|+....+..+++.+++||++||++++. |||||++ +.
T Consensus 128 Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~ 207 (340)
T 4fid_A 128 RIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT 207 (340)
T ss_dssp HHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCS
T ss_pred HHhcccCCccccceeecccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccccc
Confidence 4444555554 67889998888888999999999999998877 9999999 78
Q ss_pred hhHHHHHHHHHHHHH
Q psy2967 85 DKLEASRNELHALIE 99 (101)
Q Consensus 85 ~sf~~~~~~~~~i~~ 99 (101)
++|+++..|+.++++
T Consensus 208 nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 208 SRLTESIAVFKDIMT 222 (340)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999998875
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.08 E-value=2.1e-11 Score=86.21 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=53.2
Q ss_pred EeccCCCcceeeeeccccCcCC--CCCCCccc-eEEEEEecCcEEEEEEeeCCC----------Cccce-----------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS--QDMIPTVG-FNMRKITKGNVTIKVWDIGGQ----------PRFRS----------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~----------~~~~~----------- 75 (101)
.+|.+|||||||++++.+.++. ..+..|.. .....+...+..+.+|||+|+ ++|..
T Consensus 180 lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 259 (436)
T 2hjg_A 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE 259 (436)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred EEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCC
Confidence 4699999999999999987753 22332222 222345566778999999998 44322
Q ss_pred --EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 --IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 --i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
++|+|+++..++++. .|+..+.
T Consensus 260 ~~llv~D~~~~~s~~~~-~~~~~~~ 283 (436)
T 2hjg_A 260 VVAVVLDGEEGIIEQDK-RIAGYAH 283 (436)
T ss_dssp EEEEEEETTTCCCHHHH-HHHHHHH
T ss_pred EEEEEEcCCcCCcHHHH-HHHHHHH
Confidence 889999999998876 4666554
No 136
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.08 E-value=4.2e-10 Score=74.14 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=52.9
Q ss_pred EeccCCCcceeeeeccccCc-CCCCCCC---ccceEEEEEecCcEEEEEEeeCCCCccc-------------------e-
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ-FSQDMIP---TVGFNMRKITKGNVTIKVWDIGGQPRFR-------------------S- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~-~~~~~~~---t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------------~- 75 (101)
.+|.+|||||||++++.+.. +...+.| |.......+...+..+.+|||+|+..+. .
T Consensus 27 lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (260)
T 2xtp_A 27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGP 106 (260)
T ss_dssp EEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 36999999999999999876 5544444 3334444566778899999999975431 1
Q ss_pred ---EEEEECCChhhH-HHHHHHHHHH
Q psy2967 76 ---IYMVDAADTDKL-EASRNELHAL 97 (101)
Q Consensus 76 ---i~v~d~~~~~sf-~~~~~~~~~i 97 (101)
|+|+|+++.... ..+..|+.++
T Consensus 107 d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (260)
T 2xtp_A 107 HVLLLVTQLGRYTSQDQQAAQRVKEI 132 (260)
T ss_dssp SEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 899999863322 2334455443
No 137
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.05 E-value=1e-10 Score=75.04 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=36.1
Q ss_pred EeccCCCcceeeeeccccCcCCCCCC----CccceEEEEEe-cCcEEEEEEeeCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMI----PTVGFNMRKIT-KGNVTIKVWDIGGQ 70 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~----~t~~~~~~~~~-~~~~~~~i~D~~G~ 70 (101)
.+|.+|||||||++++.++.+..... .|....+..+. ..+..+.+|||+|.
T Consensus 34 v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 89 (223)
T 4dhe_A 34 FAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY 89 (223)
T ss_dssp EEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred EEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence 36999999999999999886322222 23334444454 56788999999995
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.03 E-value=2.6e-10 Score=79.26 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=50.6
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEEEecCcEEEEEEeeCCCC---------ccce-------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRKITKGNVTIKVWDIGGQP---------RFRS------- 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~------- 75 (101)
++.+. .+|.+|||||||++++.+..+.. ...+|.......+...+..+.+|||+|.- .++.
T Consensus 179 ~~~V~-lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 179 IPSIG-IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKY 257 (364)
T ss_dssp CCEEE-EECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGG
T ss_pred CcEEE-EECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHh
Confidence 44444 36999999999999999876532 23455555555566566889999999972 1221
Q ss_pred ----EEEEECCChh--hHHHHHHHH
Q psy2967 76 ----IYMVDAADTD--KLEASRNEL 94 (101)
Q Consensus 76 ----i~v~d~~~~~--sf~~~~~~~ 94 (101)
++|+|.+++. +.+....|.
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~ 282 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSF 282 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCcchHHHHHHHHH
Confidence 8899999876 555554443
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.00 E-value=7.3e-11 Score=83.42 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=45.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceE----EEEEecCcEEEEEEeeCCCC--------ccce------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQP--------RFRS------------ 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G~~--------~~~~------------ 75 (101)
.+|.+|||||||++++.+..+. ...++.|.. +..+...+..+.+|||+|++ +++.
T Consensus 8 ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~i 86 (436)
T 2hjg_A 8 IVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVI 86 (436)
T ss_dssp EECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence 3699999999999999987654 334444433 33456677889999999986 3322
Q ss_pred EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|+|.++..++.. .|+.+++
T Consensus 87 l~vvD~~~~~~~~d--~~~~~~l 107 (436)
T 2hjg_A 87 IFMVNGREGVTAAD--EEVAKIL 107 (436)
T ss_dssp EEEEETTTCSCHHH--HHHHHHH
T ss_pred EEEEeCCCCCCHHH--HHHHHHH
Confidence 88999998777554 3454444
No 140
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.99 E-value=1.2e-09 Score=76.94 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=47.4
Q ss_pred CccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC----------hhhHHHHHHHHHHHHH
Q psy2967 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD----------TDKLEASRNELHALIE 99 (101)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~----------~~sf~~~~~~~~~i~~ 99 (101)
+|+|++...+..+++.+++||++||++++. |||||+++ +++|+++..|+.++.+
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 466777766777789999999999999887 99999999 8999999999999875
No 141
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=2.8e-10 Score=79.18 Aligned_cols=77 Identities=17% Similarity=0.111 Sum_probs=48.2
Q ss_pred eccCCCcceeeeeccccCcCCC-CC-CCccceEEEEEecC-----------------cEEEEEEeeCCCCccce------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRKITKG-----------------NVTIKVWDIGGQPRFRS------ 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~------ 75 (101)
+|.+|||||||++++.+..+.. ++ .+|++.+...+... ...+.+||++|+.++..
T Consensus 8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~ 87 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLG 87 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGT
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHH
Confidence 6899999999999999876422 22 12444332222222 26899999999876421
Q ss_pred -------------EEEEECCCh----------hhHHHHHHHHHHH
Q psy2967 76 -------------IYMVDAADT----------DKLEASRNELHAL 97 (101)
Q Consensus 76 -------------i~v~d~~~~----------~sf~~~~~~~~~i 97 (101)
++|+|+++. +.+..+..+..|+
T Consensus 88 ~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 88 NKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp CCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 889999863 4555555544444
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.97 E-value=9.9e-10 Score=75.45 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=48.9
Q ss_pred CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECC----------ChhhHHHHHHHHHHHHH
Q psy2967 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA----------DTDKLEASRNELHALIE 99 (101)
Q Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~----------~~~sf~~~~~~~~~i~~ 99 (101)
..||+|+....+..+++.+++||++||++++. |||||++ +.++|+++..|+.++.+
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 67889988888888999999999999998877 9999554 78899999999998875
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.97 E-value=2.6e-10 Score=81.81 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=52.7
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCcc-ceEEEEEecCcEEEEEEeeCCCC-ccce--------------------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTV-GFNMRKITKGNVTIKVWDIGGQP-RFRS-------------------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~-~~~~-------------------- 75 (101)
.+|.+|||||||++++.+.++ ...+..|. ......+..++..+.+|||+|.. .+..
T Consensus 248 ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~v 327 (482)
T 1xzp_A 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV 327 (482)
T ss_dssp EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred EECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEE
Confidence 369999999999999998753 33444333 33334566678899999999987 4321
Q ss_pred EEEEECCChhhHHHH
Q psy2967 76 IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 i~v~d~~~~~sf~~~ 90 (101)
|+|+|.+++.+++..
T Consensus 328 l~VvD~s~~~s~~~~ 342 (482)
T 1xzp_A 328 LFVLDASSPLDEEDR 342 (482)
T ss_dssp EEEEETTSCCCHHHH
T ss_pred EEEecCCCCCCHHHH
Confidence 899999999888764
No 144
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.96 E-value=4.4e-10 Score=82.40 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=55.2
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCC----CCCCccceEEEEEe----------------cCcEEEEEEeeCCCCcc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQ----DMIPTVGFNMRKIT----------------KGNVTIKVWDIGGQPRF 73 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 73 (101)
.|.+. .+|.+++|||||++++.+..+.. ...++++..+.... .....+.+|||+|++.|
T Consensus 5 ~~~V~-IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVS-VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEE-EECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEE-EECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 34444 36999999999999998765542 23456676654321 11236999999999987
Q ss_pred ce------------EEEEECCC---hhhHHHHH
Q psy2967 74 RS------------IYMVDAAD---TDKLEASR 91 (101)
Q Consensus 74 ~~------------i~v~d~~~---~~sf~~~~ 91 (101)
.. |+|+|.++ +++++.+.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~ 116 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN 116 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence 66 99999999 78877664
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.95 E-value=2e-09 Score=70.86 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=36.8
Q ss_pred EeccCCCcceeeeeccccCcCCCCCC----CccceEEEEEecCcEEEEEEeeCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (101)
.+|.+|||||||++++.+..+..... .|.......+...+..+.+|||+|.
T Consensus 26 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 26 LVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp EESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred EECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 36999999999999999877543322 3334444556677899999999996
No 146
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.93 E-value=2e-09 Score=74.53 Aligned_cols=56 Identities=23% Similarity=0.423 Sum_probs=49.2
Q ss_pred CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC----------hhhHHHHHHHHHHHHH
Q psy2967 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD----------TDKLEASRNELHALIE 99 (101)
Q Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~----------~~sf~~~~~~~~~i~~ 99 (101)
+.||+|++...+..+++.+.+||++||++++. |||||+++ ..+|+++..|+.++.+
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 45788888777888899999999999998887 99999999 5789999999998875
No 147
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.93 E-value=4.4e-10 Score=78.23 Aligned_cols=68 Identities=9% Similarity=0.006 Sum_probs=52.2
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHH
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~ 88 (101)
+|.+++|||||++++. ....|+...+..+...+..+.+||++|+++|.. |+|+| +...+.
T Consensus 27 iG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd--~~g~~~ 98 (370)
T 2elf_A 27 IGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP--PQGLDA 98 (370)
T ss_dssp EESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC--TTCCCH
T ss_pred ECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc--CCCCcH
Confidence 5999999999999998 344566666667777788899999999998854 99999 444445
Q ss_pred HHHHHHHH
Q psy2967 89 ASRNELHA 96 (101)
Q Consensus 89 ~~~~~~~~ 96 (101)
...+|+..
T Consensus 99 qt~e~~~~ 106 (370)
T 2elf_A 99 HTGECIIA 106 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 148
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.92 E-value=1.3e-09 Score=81.16 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=53.1
Q ss_pred eccCCCcceeeeeccccC--cCC------C------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFS------Q------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|.+++|||||++++... .+. . ...+|+......+..+++.+.+|||+|+..|..
T Consensus 18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 97 (691)
T 1dar_A 18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERS 97 (691)
T ss_dssp EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHH
Confidence 699999999999999841 110 0 233555555555677789999999999988765
Q ss_pred -------EEEEECCChhhHHHHHHHHH
Q psy2967 76 -------IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~~~~~~ 95 (101)
|+|+|.++..+++....|..
T Consensus 98 l~~aD~~ilVvDa~~g~~~~t~~~~~~ 124 (691)
T 1dar_A 98 MRVLDGAIVVFDSSQGVEPQSETVWRQ 124 (691)
T ss_dssp HHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred HHHCCEEEEEEECCCCcchhhHHHHHH
Confidence 99999999888887766643
No 149
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.91 E-value=4.3e-09 Score=73.13 Aligned_cols=56 Identities=29% Similarity=0.496 Sum_probs=44.1
Q ss_pred CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC----------hhhHHHHHHHHHHHHH
Q psy2967 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD----------TDKLEASRNELHALIE 99 (101)
Q Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~----------~~sf~~~~~~~~~i~~ 99 (101)
..||+|++...+..+++.+.+||++||++++. |||||+++ .++|+++..|+..+.+
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 45678888777888899999999999998877 99999999 7899999999998875
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.90 E-value=1.9e-10 Score=81.71 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=50.4
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceE----EEEEecCcEEEEEEeeCC--------CCccce------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGG--------QPRFRS------ 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~------ 75 (101)
.|.+. .+|.+|||||||++++.+..+. ...++.|.. +..+...+..+.+|||+| +++++.
T Consensus 23 ~~~V~-lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVA-IVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEE-EECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEE-EECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 44444 3699999999999999987654 233344433 234566778999999999 444433
Q ss_pred ------EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 ------IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 ------i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|+|..+..+ ....|+.+++
T Consensus 101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l 127 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVT--AADEEVAKIL 127 (456)
T ss_dssp HHCSEEEEEEESSSCSC--HHHHHHHHHH
T ss_pred hhCCEEEEEEeCCCCCC--hHHHHHHHHH
Confidence 88899765433 3344555544
No 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.88 E-value=1.6e-09 Score=76.68 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=45.2
Q ss_pred eccCCCcceeeeeccccCcCC--CCCC-CccceEEEEEecCc-EEEEEEeeCCCCccce-------------------EE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QDMI-PTVGFNMRKITKGN-VTIKVWDIGGQPRFRS-------------------IY 77 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~~~-~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~-------------------i~ 77 (101)
+|..++|||||++++.+..+. ..+. .|+......+...+ ..+.+|||+|++.+.. |+
T Consensus 40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vll 119 (423)
T 3qq5_A 40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGIL 119 (423)
T ss_dssp ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEE
Confidence 599999999999999988763 1222 23333344444333 4899999999976531 88
Q ss_pred EEECCChhhHHHHHHHHHHHH
Q psy2967 78 MVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 78 v~d~~~~~sf~~~~~~~~~i~ 98 (101)
|+|.+..+.. ..|+.++.
T Consensus 120 VvD~~~~~~~---~~~l~~l~ 137 (423)
T 3qq5_A 120 VTDSAPTPYE---DDVVNLFK 137 (423)
T ss_dssp ECSSSCCHHH---HHHHHHHH
T ss_pred EEeCCChHHH---HHHHHHHH
Confidence 9998444443 34554443
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.86 E-value=1.8e-09 Score=75.74 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=49.5
Q ss_pred eccCCCcceeeeeccccC---cCCCCCCC--ccceEEEE--Ee-----------------cC----cEEEEEEeeCCCCc
Q psy2967 21 MRKITKGNVTIWPVPLSG---QFSQDMIP--TVGFNMRK--IT-----------------KG----NVTIKVWDIGGQPR 72 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~---~~~~~~~~--t~~~~~~~--~~-----------------~~----~~~~~i~D~~G~~~ 72 (101)
+|..++|||||++++.+. .+.++..+ |+...+.. +. +. ...+.+||++|+++
T Consensus 16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~ 95 (410)
T 1kk1_A 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95 (410)
T ss_dssp ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHH
T ss_pred ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHH
Confidence 599999999999999843 33334444 66554432 11 11 27899999999988
Q ss_pred cce------------EEEEECCC----hhhHHHHHHH
Q psy2967 73 FRS------------IYMVDAAD----TDKLEASRNE 93 (101)
Q Consensus 73 ~~~------------i~v~d~~~----~~sf~~~~~~ 93 (101)
|.. |+|+|.++ +++++.+..|
T Consensus 96 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 132 (410)
T 1kk1_A 96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132 (410)
T ss_dssp HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence 755 99999984 5566665433
No 153
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.86 E-value=3.6e-10 Score=80.71 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=46.5
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce--------------------E
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS--------------------I 76 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i 76 (101)
.+|.+|||||||++++.+.++ ...+..|.. .....+..++..+.+|||+|...+.. +
T Consensus 229 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl 308 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVL 308 (462)
T ss_dssp EEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEE
T ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEE
Confidence 359999999999999998654 333332221 22233555778899999999744321 8
Q ss_pred EEEECCChhhHHHHHHHHHHH
Q psy2967 77 YMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 77 ~v~d~~~~~sf~~~~~~~~~i 97 (101)
+|+|.+++.+.+. ..|+..+
T Consensus 309 ~VvD~s~~~~~~~-~~i~~~l 328 (462)
T 3geh_A 309 LTIDAATGWTTGD-QEIYEQV 328 (462)
T ss_dssp EEEETTTCSCHHH-HHHHHHH
T ss_pred EEeccCCCCCHHH-HHHHHhc
Confidence 8999999877655 3455443
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.84 E-value=9.2e-10 Score=78.76 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.3
Q ss_pred eeeeE-eccCCCcceeeeeccccC--cCCCC-------------------------------CCCccceEEEEEecCcEE
Q psy2967 16 TVGFN-MRKITKGNVTIWPVPLSG--QFSQD-------------------------------MIPTVGFNMRKITKGNVT 61 (101)
Q Consensus 16 ~~g~~-vG~~~vGKtsl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~ 61 (101)
.+.+. +|.+++|||||+++++.. .+.+. .-.|+......+...+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 34444 599999999999998754 11110 012333334456677899
Q ss_pred EEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967 62 IKVWDIGGQPRFRS------------IYMVDAADTDKL 87 (101)
Q Consensus 62 ~~i~D~~G~~~~~~------------i~v~d~~~~~sf 87 (101)
+.+||++|+++|.. |+|+|.++..++
T Consensus 113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~ 150 (483)
T 3p26_A 113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 150 (483)
T ss_dssp EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----
T ss_pred EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccc
Confidence 99999999998876 999999987543
No 155
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.84 E-value=2.1e-09 Score=75.44 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=47.8
Q ss_pred EeccCCCcceeeeeccccC---cCCCCCCC--ccceEEEE--Ee-----------------cC----cEEEEEEeeCCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSG---QFSQDMIP--TVGFNMRK--IT-----------------KG----NVTIKVWDIGGQP 71 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~---~~~~~~~~--t~~~~~~~--~~-----------------~~----~~~~~i~D~~G~~ 71 (101)
.+|..++|||||++++.+. .+..++.+ |+...+.. +. +. ...+.+||++|++
T Consensus 13 iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~ 92 (408)
T 1s0u_A 13 MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE 92 (408)
T ss_dssp EESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH
T ss_pred EEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH
Confidence 3599999999999999843 33334444 66554432 11 11 2789999999998
Q ss_pred ccce------------EEEEECCC----hhhHHHHHHH
Q psy2967 72 RFRS------------IYMVDAAD----TDKLEASRNE 93 (101)
Q Consensus 72 ~~~~------------i~v~d~~~----~~sf~~~~~~ 93 (101)
+|.. |+|+|.++ +++++.+..|
T Consensus 93 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 130 (408)
T 1s0u_A 93 TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130 (408)
T ss_dssp HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence 8755 99999984 5666666433
No 156
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.84 E-value=1.3e-09 Score=69.29 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=38.2
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCc----------cce-------------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPR----------FRS------------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~----------~~~------------- 75 (101)
+|++|||||||++++.+..+...+.|+.|.... .+...+ .+.+||++|... ++.
T Consensus 32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ 110 (210)
T ss_dssp EECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhccc
Confidence 599999999999999987765556666664321 122112 578999999742 111
Q ss_pred --EEEEECCChhhHH
Q psy2967 76 --IYMVDAADTDKLE 88 (101)
Q Consensus 76 --i~v~d~~~~~sf~ 88 (101)
++++|+++..++.
T Consensus 111 ~~~~v~d~~~~~~~~ 125 (210)
T 1pui_A 111 GLVVLMDIRHPLKDL 125 (210)
T ss_dssp EEEEEEETTSCCCHH
T ss_pred EEEEEEECCCCCchh
Confidence 8899999876654
No 157
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.83 E-value=3.7e-10 Score=80.63 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=38.9
Q ss_pred eccCCCcceeeeecccc--CcCCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|..++|||||++++.. +.+.+ ....|+...+..+...+..+.+||+
T Consensus 49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDt 128 (467)
T 1r5b_A 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDA 128 (467)
T ss_dssp EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECCC
T ss_pred EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEEC
Confidence 59999999999999864 22210 1234555444456667889999999
Q ss_pred CCCCccce------------EEEEECCCh
Q psy2967 68 GGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~ 84 (101)
+|+++|.. |+|+|.++.
T Consensus 129 PGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 129 PGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp CC-----------TTSCSEEEEEEECSTT
T ss_pred CCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 99998866 999999985
No 158
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=1e-08 Score=69.43 Aligned_cols=67 Identities=15% Similarity=0.026 Sum_probs=55.3
Q ss_pred eeeeeccccCcCC-CCCCCccceEEEE-EecCcEEEEEEeeCCCCccce------------EEEEECCChh-hHHHHHHH
Q psy2967 29 VTIWPVPLSGQFS-QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD-KLEASRNE 93 (101)
Q Consensus 29 tsl~~~~~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~-sf~~~~~~ 93 (101)
.+|+.+|+.+.|. +.+.||+|..+.. +..+. .+.+||+ +++++. |+|||++++. +|+.+..|
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred CcEEEEEEcccccccCCCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 3799999999999 8999999966643 22333 7999999 888777 8999999998 79999999
Q ss_pred HHHHH
Q psy2967 94 LHALI 98 (101)
Q Consensus 94 ~~~i~ 98 (101)
+.++.
T Consensus 108 l~~~~ 112 (301)
T 1u0l_A 108 LVLAE 112 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 159
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.83 E-value=6.3e-09 Score=72.88 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=51.0
Q ss_pred EeccCCCcceeeeeccccCcCCCC---CCCccceEE-------EE------------EecCcEEEEEEeeCCCCccce--
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQD---MIPTVGFNM-------RK------------ITKGNVTIKVWDIGGQPRFRS-- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~---~~~t~~~~~-------~~------------~~~~~~~~~i~D~~G~~~~~~-- 75 (101)
.+|.+++|||||++++.+...... ...+++... .. .......+.+||++|+++|..
T Consensus 13 vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~ 92 (403)
T 3sjy_A 13 VVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATM 92 (403)
T ss_dssp EECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHH
T ss_pred EECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHH
Confidence 369999999999999987433221 001110000 00 011227899999999998876
Q ss_pred ----------EEEEECCChhhHHHHHHHHHHH
Q psy2967 76 ----------IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 76 ----------i~v~d~~~~~sf~~~~~~~~~i 97 (101)
++|+|.++..++....+|+..+
T Consensus 93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~ 124 (403)
T 3sjy_A 93 LSGAALMDGAILVVAANEPFPQPQTREHFVAL 124 (403)
T ss_dssp HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHH
Confidence 9999999887677777776544
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.83 E-value=3.7e-09 Score=71.55 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=36.2
Q ss_pred eccCCCcceeeeeccccCcCC--CCCCCccc-eEEEEEecCcEEEEEEeeCCCC
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVG-FNMRKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~ 71 (101)
+|.+|||||||++++.+..+. .....|.. .....+..++..+.+|||+|..
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 599999999999999987653 12222222 2222355678899999999997
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.82 E-value=1.2e-10 Score=84.56 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=52.7
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEec-CcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~~~ 84 (101)
.+|.+++|||||++++....+.....+++..++ ..+.. .+..+.+|||+|++.|.. |+|+|.++.
T Consensus 9 IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg 88 (537)
T 3izy_P 9 IMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG 88 (537)
T ss_dssp EEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC
Confidence 469999999999999998776655555544332 22332 456789999999998776 999999986
Q ss_pred hhHHHHH
Q psy2967 85 DKLEASR 91 (101)
Q Consensus 85 ~sf~~~~ 91 (101)
...+...
T Consensus 89 ~~~qt~e 95 (537)
T 3izy_P 89 VMKQTVE 95 (537)
T ss_dssp CCHHHHH
T ss_pred ccHHHHH
Confidence 6554443
No 162
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.81 E-value=1.2e-09 Score=78.31 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=48.1
Q ss_pred EeccCCCcceeeeeccccCc-------CCCCCC--CccceEEEEEecCcEEEEEEeeCCCCccce------------EEE
Q psy2967 20 NMRKITKGNVTIWPVPLSGQ-------FSQDMI--PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYM 78 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~-------~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v 78 (101)
.+|..++|||||++++.+.. +..+.. .|+...+..+...+..+.+||++|+++|.. |+|
T Consensus 24 iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilV 103 (482)
T 1wb1_A 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIV 103 (482)
T ss_dssp EEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEE
T ss_pred EECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEE
Confidence 35999999999999998765 222222 344444444555778999999999988754 999
Q ss_pred EECCC---hhhHHHH
Q psy2967 79 VDAAD---TDKLEAS 90 (101)
Q Consensus 79 ~d~~~---~~sf~~~ 90 (101)
+|.++ +++++.+
T Consensus 104 vda~~g~~~qt~e~l 118 (482)
T 1wb1_A 104 VDAKEGPKTQTGEHM 118 (482)
T ss_dssp EETTTCSCHHHHHHH
T ss_pred EecCCCccHHHHHHH
Confidence 99988 5666555
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.79 E-value=6.8e-10 Score=80.02 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=52.0
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCcc--ceEEEEEecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMV 79 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~ 79 (101)
.|.+. .+|..++|||||++++....+.....+.+ ......+..++..+.+|||+|++.|.. ++|+
T Consensus 4 ~~~V~-IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 4 APVVT-IMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCEE-EEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CeEEE-EECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 34444 36999999999999998766554332222 222223444566889999999998866 9999
Q ss_pred ECCC---hhhHHHH
Q psy2967 80 DAAD---TDKLEAS 90 (101)
Q Consensus 80 d~~~---~~sf~~~ 90 (101)
|.++ +++.+.+
T Consensus 83 da~~g~~~qT~e~l 96 (501)
T 1zo1_I 83 AADDGVMPQTIEAI 96 (501)
T ss_dssp ETTTBSCTTTHHHH
T ss_pred ecccCccHHHHHHH
Confidence 9987 4555544
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.79 E-value=7.1e-09 Score=72.59 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=51.9
Q ss_pred EeccCCCcceeeeeccccC--------cCCC-----------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 20 NMRKITKGNVTIWPVPLSG--------QFSQ-----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
.+|.+++|||||++++... .+.. ....|+......+...+..+.+||++|+++|..
T Consensus 16 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~ 95 (405)
T 2c78_A 16 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG 95 (405)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHH
Confidence 3599999999999999863 2211 011233333344666778999999999998765
Q ss_pred -------EEEEECCChhhHHHHHHHHHH
Q psy2967 76 -------IYMVDAADTDKLEASRNELHA 96 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~~~~~~~ 96 (101)
|+|+|.++....+ ..+|+..
T Consensus 96 ~~~aD~~ilVvda~~g~~~q-t~~~l~~ 122 (405)
T 2c78_A 96 AAQMDGAILVVSAADGPMPQ-TREHILL 122 (405)
T ss_dssp HTTCSSEEEEEETTTCCCHH-HHHHHHH
T ss_pred HHHCCEEEEEEECCCCCcHH-HHHHHHH
Confidence 9999998865433 3445443
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.78 E-value=8.1e-09 Score=72.98 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred eccCCCcceeeeeccccCc--CCCC----------CCC-----------------------ccceEEEEEecCcEEEEEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FSQD----------MIP-----------------------TVGFNMRKITKGNVTIKVW 65 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~~~----------~~~-----------------------t~~~~~~~~~~~~~~~~i~ 65 (101)
+|..++|||||+++++.+. +... ..+ |+...+..+...+..+.+|
T Consensus 30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii 109 (434)
T 1zun_B 30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA 109 (434)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence 5999999999999997543 1110 112 2223334456677899999
Q ss_pred eeCCCCccce------------EEEEECCChh
Q psy2967 66 DIGGQPRFRS------------IYMVDAADTD 85 (101)
Q Consensus 66 D~~G~~~~~~------------i~v~d~~~~~ 85 (101)
|++|+++|.. |+|+|.++..
T Consensus 110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~ 141 (434)
T 1zun_B 110 DTPGHEQYTRNMATGASTCDLAIILVDARYGV 141 (434)
T ss_dssp ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 9999998865 9999998864
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.77 E-value=2.6e-09 Score=75.89 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=44.5
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCC----------CCccce-----------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGG----------QPRFRS----------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G----------~~~~~~----------- 75 (101)
.+|.++||||||++++.+.+. ...+..|.. .....+...+..+.+|||+| ++++..
T Consensus 200 ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 279 (456)
T 4dcu_A 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE 279 (456)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred EecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCC
Confidence 469999999999999997642 222222221 11234556677999999999 665543
Q ss_pred --EEEEECCChhh
Q psy2967 76 --IYMVDAADTDK 86 (101)
Q Consensus 76 --i~v~d~~~~~s 86 (101)
|+|+|.++..+
T Consensus 280 ~~llviD~~~~~~ 292 (456)
T 4dcu_A 280 VVAVVLDGEEGII 292 (456)
T ss_dssp EEEEEEETTTCCC
T ss_pred EEEEEEeCCCCcC
Confidence 88999987544
No 167
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.77 E-value=9.8e-09 Score=76.42 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=52.3
Q ss_pred eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|.+++|||||+++++. +.+.. ....|+......+..++..+.+|||+|+..|..
T Consensus 16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 95 (693)
T 2xex_A 16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERS 95 (693)
T ss_dssp ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHH
Confidence 59999999999999984 22210 112334433444666789999999999988765
Q ss_pred -------EEEEECCChhhHHHHHHHH
Q psy2967 76 -------IYMVDAADTDKLEASRNEL 94 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~~~~~~ 94 (101)
|+|+|.++..+++....|.
T Consensus 96 l~~aD~~llVvDa~~g~~~~~~~~~~ 121 (693)
T 2xex_A 96 LRVLDGAVTVLDAQSGVEPQTETVWR 121 (693)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHH
T ss_pred HHHCCEEEEEECCCCCCcHHHHHHHH
Confidence 9999999988877766554
No 168
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.76 E-value=2.4e-09 Score=77.57 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=55.1
Q ss_pred cceeeeEeccCCCcceeeeecccc------------------CcCCC------CCCCccceEEEEEecCcEEEEEEeeCC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS------------------GQFSQ------DMIPTVGFNMRKITKGNVTIKVWDIGG 69 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~------------------~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G 69 (101)
++.+.+ +|.+++|||||++++.. ..... ....|+......+..+++.+.+|||+|
T Consensus 13 ~r~IaI-iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAI-ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp EEEEEE-EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred CCEEEE-ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 344443 69999999999999961 11110 011233344445677889999999999
Q ss_pred CCccce------------EEEEECCChhhHHHHHHH
Q psy2967 70 QPRFRS------------IYMVDAADTDKLEASRNE 93 (101)
Q Consensus 70 ~~~~~~------------i~v~d~~~~~sf~~~~~~ 93 (101)
+++|.. |+|+|.++..+.+....|
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~ 127 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM 127 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 998776 999999998777776555
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.76 E-value=5.3e-09 Score=73.17 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=47.7
Q ss_pred eccCCCcceeeeeccccC-------cCCC-----------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSG-------QFSQ-----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~-------~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|..++|||||++++... .+.. ....|+...+..+...+..+.+||++|+++|..
T Consensus 9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~ 88 (397)
T 1d2e_A 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTA 88 (397)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSS
T ss_pred EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHh
Confidence 599999999999999863 1110 112244444444666778999999999988754
Q ss_pred -----EEEEECCChhhH
Q psy2967 76 -----IYMVDAADTDKL 87 (101)
Q Consensus 76 -----i~v~d~~~~~sf 87 (101)
|+|+|.++....
T Consensus 89 ~aD~~ilVvda~~g~~~ 105 (397)
T 1d2e_A 89 PLDGCILVVAANDGPMP 105 (397)
T ss_dssp CCSEEEEEEETTTCSCH
T ss_pred hCCEEEEEEECCCCCCH
Confidence 999999985443
No 170
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.76 E-value=8.7e-09 Score=75.65 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=46.3
Q ss_pred eccCCCcceeeeeccccC--cCC-----CCC------CCccceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFS-----QDM------IPTVGFNMR----KI-----TKGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~-----~~~------~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|..++|||||+.++... .+. ..+ +.+.|..+. .+ ++..+.+.+|||+|++.|..
T Consensus 10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~ 89 (599)
T 3cb4_D 10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVS 89 (599)
T ss_dssp ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHH
Confidence 599999999999999752 111 111 112232221 22 23458999999999998865
Q ss_pred ---------EEEEECCChhhHHHHHHHHHHH
Q psy2967 76 ---------IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 76 ---------i~v~d~~~~~sf~~~~~~~~~i 97 (101)
|+|+|.++..+++....|....
T Consensus 90 ~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~ 120 (599)
T 3cb4_D 90 RSLAACEGALLVVDAGQGVEAQTLANCYTAM 120 (599)
T ss_dssp HHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999988887777776544
No 171
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=6.8e-09 Score=72.86 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=43.5
Q ss_pred eccCCCcceeeeeccccCcCC-CCC-----CCccceEEEE-------------------Eec-CcEEEEEEeeCCCCcc-
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-QDM-----IPTVGFNMRK-------------------ITK-GNVTIKVWDIGGQPRF- 73 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-~~~-----~~t~~~~~~~-------------------~~~-~~~~~~i~D~~G~~~~- 73 (101)
+|.+|||||||++++.+.... .++ .|+.|..... +.. +.+.+.+||++|..+.
T Consensus 6 vG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a 85 (397)
T 1wxq_A 6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA 85 (397)
T ss_dssp EECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC------
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch
Confidence 699999999999999987632 122 2344432211 111 1478999999997431
Q ss_pred ---c-----------e----EEEEECCCh-----------hhHHHHHHHHHHH
Q psy2967 74 ---R-----------S----IYMVDAADT-----------DKLEASRNELHAL 97 (101)
Q Consensus 74 ---~-----------~----i~v~d~~~~-----------~sf~~~~~~~~~i 97 (101)
+ . ++|+|+++. +.+..+..+..++
T Consensus 86 ~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL 138 (397)
T 1wxq_A 86 HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREI 138 (397)
T ss_dssp ---------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHH
Confidence 1 1 889999886 5666665554444
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.75 E-value=1.3e-08 Score=67.86 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=19.5
Q ss_pred EeccCCCcceeeeeccccCcCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
.+|.+|||||||++++.+.++.
T Consensus 31 vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 31 VVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp EEEBTTSCHHHHHHHHHTSCCS
T ss_pred EEeCCCCCHHHHHHHHHCCCcC
Confidence 3699999999999999988774
No 173
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.75 E-value=4.1e-09 Score=79.90 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=52.3
Q ss_pred eccCCCcceeeeeccccC------------cCCC------CCCCccceEEEEE----------------ecCcEEEEEEe
Q psy2967 21 MRKITKGNVTIWPVPLSG------------QFSQ------DMIPTVGFNMRKI----------------TKGNVTIKVWD 66 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~------------~~~~------~~~~t~~~~~~~~----------------~~~~~~~~i~D 66 (101)
+|..++|||||+++++.. .+.+ ....|+......+ +++++.+.+||
T Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD 104 (842)
T 1n0u_A 25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID 104 (842)
T ss_dssp ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence 599999999999998863 1111 1112443322221 23478999999
Q ss_pred eCCCCccce------------EEEEECCChhhHHHHHHHHH
Q psy2967 67 IGGQPRFRS------------IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 67 ~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~ 95 (101)
|+|+.+|.. |+|+|.++..+++....|..
T Consensus 105 TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~ 145 (842)
T 1n0u_A 105 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ 145 (842)
T ss_dssp CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999998876 99999999988888766654
No 174
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.75 E-value=7.3e-09 Score=73.41 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=46.3
Q ss_pred eccCCCcceeeeeccccC--cCC-----------------------------CCC--CCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFS-----------------------------QDM--IPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~-----------------------------~~~--~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|.+++|||||++++... .+. .+. ..|+...+..+...+..+.+|||
T Consensus 23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDT 102 (439)
T 3j2k_7 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA 102 (439)
T ss_pred EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEEC
Confidence 599999999999999532 111 111 12334444456777889999999
Q ss_pred CCCCccce------------EEEEECCCh
Q psy2967 68 GGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~ 84 (101)
+|+++|.. |+|+|.++.
T Consensus 103 PGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 103 PGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred CChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 99998866 899999875
No 175
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.73 E-value=2.6e-08 Score=69.03 Aligned_cols=42 Identities=14% Similarity=0.413 Sum_probs=36.1
Q ss_pred CcEEEEEEeeCCCCccce------------EEEEECC----------ChhhHHHHHHHHHHHHH
Q psy2967 58 GNVTIKVWDIGGQPRFRS------------IYMVDAA----------DTDKLEASRNELHALIE 99 (101)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~------------i~v~d~~----------~~~sf~~~~~~~~~i~~ 99 (101)
+.+.+++||++||++++. |+|||++ +.++|+++..|+.++.+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~ 244 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 244 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHh
Confidence 579999999999999887 9999998 88999999999998875
No 176
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.72 E-value=1.8e-08 Score=67.11 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=40.4
Q ss_pred EeccCCCcceeeeecccc-CcCCCCC-------CCccceEEEE--E--ecCcEEEEEEeeCCCCccceEEEEECCChhhH
Q psy2967 20 NMRKITKGNVTIWPVPLS-GQFSQDM-------IPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRSIYMVDAADTDKL 87 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~-~~~~~~~-------~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~i~v~d~~~~~sf 87 (101)
.+|.+|+|||||++++.. +.+...+ .+|++.+... + .+..+.+.+|||+|.... ..+.+++
T Consensus 13 vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~-------~~~~~~~ 85 (274)
T 3t5d_A 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA-------VDNSNCW 85 (274)
T ss_dssp EEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC-------SCCTTTT
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc-------ccchhhH
Confidence 469999999999999654 4455455 6777766644 3 234479999999998542 2344556
Q ss_pred HHHHHHH
Q psy2967 88 EASRNEL 94 (101)
Q Consensus 88 ~~~~~~~ 94 (101)
..+..++
T Consensus 86 ~~i~~~i 92 (274)
T 3t5d_A 86 QPVIDYI 92 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 177
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.71 E-value=1.1e-08 Score=75.15 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=48.8
Q ss_pred eccCCCcceeeeeccccC--cCC-----CCCCCc------cceEE----EEE-----ecCcEEEEEEeeCCCCccce---
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFS-----QDMIPT------VGFNM----RKI-----TKGNVTIKVWDIGGQPRFRS--- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~-----~~~~~t------~~~~~----~~~-----~~~~~~~~i~D~~G~~~~~~--- 75 (101)
+|..++|||||++++... .+. ..+..+ .|..+ ..+ ++..+.+.+|||+|+..|..
T Consensus 12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~ 91 (600)
T 2ywe_A 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVS 91 (600)
T ss_dssp ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHH
Confidence 599999999999999752 111 111111 11111 111 23458999999999998865
Q ss_pred ---------EEEEECCChhhHHHHHHHHHHH
Q psy2967 76 ---------IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 76 ---------i~v~d~~~~~sf~~~~~~~~~i 97 (101)
|+|+|.++..+++....|....
T Consensus 92 r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~ 122 (600)
T 2ywe_A 92 RALAACEGALLLIDASQGIEAQTVANFWKAV 122 (600)
T ss_dssp HHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 9999999988888887776544
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.70 E-value=8.1e-09 Score=73.53 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=49.2
Q ss_pred EeccCCCcceeeeeccccC--cCCC-------------------------------CCCCccceEEEEEecCcEEEEEEe
Q psy2967 20 NMRKITKGNVTIWPVPLSG--QFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWD 66 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 66 (101)
.+|.+++|||||+++++.. .+.+ ....|+...+..+...+..+.+||
T Consensus 12 iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiD 91 (458)
T 1f60_A 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVID 91 (458)
T ss_dssp EEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEE
Confidence 3599999999999999753 2211 122455555556777889999999
Q ss_pred eCCCCccce------------EEEEECCCh
Q psy2967 67 IGGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 67 ~~G~~~~~~------------i~v~d~~~~ 84 (101)
|+|+++|.. |+|+|.++.
T Consensus 92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 92 APGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp CCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred CCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 999998765 999999875
No 179
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.67 E-value=2.6e-08 Score=70.40 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=45.0
Q ss_pred EeccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCcc-----------ce----------
Q psy2967 20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRF-----------RS---------- 75 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~-----------~~---------- 75 (101)
.+|++|||||||++++.+..+ ...+..|.. .....+...+..+.+|||+|..+. ..
T Consensus 185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a 264 (439)
T 1mky_A 185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA 264 (439)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence 369999999999999998754 222222221 222335556668899999997321 11
Q ss_pred ---EEEEECCChhhHHH
Q psy2967 76 ---IYMVDAADTDKLEA 89 (101)
Q Consensus 76 ---i~v~d~~~~~sf~~ 89 (101)
++|+|.++..+++.
T Consensus 265 d~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 265 DVVVIVLDATQGITRQD 281 (439)
T ss_dssp SEEEEEEETTTCCCHHH
T ss_pred CEEEEEEeCCCCCCHHH
Confidence 78899998777655
No 180
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.8e-08 Score=74.13 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=46.3
Q ss_pred eccCCCcceeeeeccccCcCC--CC-------------------------------CCCccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS--QD-------------------------------MIPTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~--~~-------------------------------~~~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|.+++|||||+++++..... .. ...|+...+..+...+..+.+|||
T Consensus 173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDT 252 (611)
T 3izq_1 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA 252 (611)
T ss_dssp ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEEC
T ss_pred EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEEC
Confidence 599999999999999854211 00 112333333456677889999999
Q ss_pred CCCCccce------------EEEEECCCh
Q psy2967 68 GGQPRFRS------------IYMVDAADT 84 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~ 84 (101)
+|+++|.. |+|+|.++.
T Consensus 253 PG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 253 PGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred CCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 99998765 899999873
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.64 E-value=1.2e-08 Score=70.76 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=28.6
Q ss_pred eEeccCCCcceeeeecccc-CcCCCCC--------CCccceEEEE--Ee--cCcEEEEEEeeCCC
Q psy2967 19 FNMRKITKGNVTIWPVPLS-GQFSQDM--------IPTVGFNMRK--IT--KGNVTIKVWDIGGQ 70 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~-~~~~~~~--------~~t~~~~~~~--~~--~~~~~~~i~D~~G~ 70 (101)
..+|++|+|||||++++.. +.+...+ .+|++..... +. +..+.+.+||++|+
T Consensus 41 ~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 41 MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp EECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 3469999999999999654 4444333 2566655543 22 23468999999999
No 182
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=71.81 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=33.8
Q ss_pred eccCCCcceeeeeccccCcCCCCC--CCccceEEEEEecC-----------------cEEEEEEeeCCCCccce------
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDM--IPTVGFNMRKITKG-----------------NVTIKVWDIGGQPRFRS------ 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~------ 75 (101)
+|.+|||||||++++.+..+.... ..|+..+...+... ...+.+||++|..+..+
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg 107 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLG 107 (396)
T ss_dssp ECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------C
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHH
Confidence 689999999999999987553221 23344433332211 34699999999876432
Q ss_pred -------------EEEEECCChhhHHHH
Q psy2967 76 -------------IYMVDAADTDKLEAS 90 (101)
Q Consensus 76 -------------i~v~d~~~~~sf~~~ 90 (101)
++|+|+++.+++.++
T Consensus 108 ~~~l~~ir~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 108 NAFLSHISACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp CHHHHHHHTSSSEEEEEEC---------
T ss_pred HHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence 889999887666543
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.62 E-value=4.1e-08 Score=73.20 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=49.7
Q ss_pred eccCCCcceeeeeccccC--cCCC------------------CCCCccceEEEEEecCc-------EEEEEEeeCCCCcc
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFSQ------------------DMIPTVGFNMRKITKGN-------VTIKVWDIGGQPRF 73 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~-------~~~~i~D~~G~~~~ 73 (101)
+|..++|||||+.++... .+.. ....|+......+..++ +.+.+|||+|+..|
T Consensus 16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df 95 (704)
T 2rdo_7 16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF 95 (704)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccch
Confidence 699999999999999642 1111 11223333333344333 89999999999887
Q ss_pred ce------------EEEEECCChhhHHHHHHH
Q psy2967 74 RS------------IYMVDAADTDKLEASRNE 93 (101)
Q Consensus 74 ~~------------i~v~d~~~~~sf~~~~~~ 93 (101)
.. |+|+|.++..+.+....|
T Consensus 96 ~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 96 TIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 55 999999987766655544
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.58 E-value=2.8e-08 Score=72.01 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=43.8
Q ss_pred eccCCCcceeeeeccccC--cCCC------------------CCCCccceE----EEEEecCcEEEEEEeeCCCCccce-
Q psy2967 21 MRKITKGNVTIWPVPLSG--QFSQ------------------DMIPTVGFN----MRKITKGNVTIKVWDIGGQPRFRS- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~--~~~~------------------~~~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~- 75 (101)
+|.+++|||||++++... .+.. ...++.|.. ...+..++..+.+|||+|++.|..
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 98 (529)
T 2h5e_A 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSED 98 (529)
T ss_dssp EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHH
T ss_pred ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHH
Confidence 599999999999999852 1100 001122222 234567789999999999988765
Q ss_pred -----------EEEEECCChhh
Q psy2967 76 -----------IYMVDAADTDK 86 (101)
Q Consensus 76 -----------i~v~d~~~~~s 86 (101)
|+|+|.++...
T Consensus 99 ~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 99 TYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp HHHGGGGCSEEEEEEETTTCSC
T ss_pred HHHHHHHCCEEEEEEeCCccch
Confidence 99999987643
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.56 E-value=3.3e-08 Score=71.90 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=20.9
Q ss_pred cceeeeEeccCCCcceeeeeccccCcC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~ 40 (101)
.|.+. .+|.+|+|||||++++++.++
T Consensus 65 ~~~V~-vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 65 KPMVL-VAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp CCEEE-EEEBTTSCHHHHHHHHHTSCC
T ss_pred CcEEE-EECCCCCCHHHHHHHHhCCcc
Confidence 34443 369999999999999998876
No 186
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.55 E-value=6.7e-08 Score=67.28 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=41.4
Q ss_pred eccCCCcceeeeeccccCcC-CCC-----CCCccceEEEEEe-------------------cCcEEEEEEeeCCCCccce
Q psy2967 21 MRKITKGNVTIWPVPLSGQF-SQD-----MIPTVGFNMRKIT-------------------KGNVTIKVWDIGGQPRFRS 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~-~~~-----~~~t~~~~~~~~~-------------------~~~~~~~i~D~~G~~~~~~ 75 (101)
+|.+|||||||++++..... ..+ ..|+++.. .+. .....+.+||++|..+...
T Consensus 7 VG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~ 84 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAH 84 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCC
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCcccccc
Confidence 69999999999999987542 122 23444432 111 1246799999999876421
Q ss_pred -------------------EEEEECCC
Q psy2967 76 -------------------IYMVDAAD 83 (101)
Q Consensus 76 -------------------i~v~d~~~ 83 (101)
++|+|+++
T Consensus 85 ~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 85 KGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 88999986
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.50 E-value=1.9e-08 Score=73.79 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=33.2
Q ss_pred eccCCCcceeeeeccccCc--CC-----------------------------CCCC--CccceEEEEEecCcEEEEEEee
Q psy2967 21 MRKITKGNVTIWPVPLSGQ--FS-----------------------------QDMI--PTVGFNMRKITKGNVTIKVWDI 67 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~--~~-----------------------------~~~~--~t~~~~~~~~~~~~~~~~i~D~ 67 (101)
+|.+++|||||+++++... +. .+.. .|+...+..+...+..+.+|||
T Consensus 183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDT 262 (592)
T 3mca_A 183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA 262 (592)
T ss_dssp ECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCEE
T ss_pred EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEEC
Confidence 5999999999999995310 00 0011 1222223335556688999999
Q ss_pred CCCCccce------------EEEEECCC
Q psy2967 68 GGQPRFRS------------IYMVDAAD 83 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~ 83 (101)
+|+++|.. |+|+|.++
T Consensus 263 PGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 263 PGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ESSSEEEEECCC-------CCSEEEEEE
T ss_pred CChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 99998876 88999875
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.49 E-value=2.2e-07 Score=68.94 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=48.2
Q ss_pred eccCCCcceeeeeccccCcCC-------------CCC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-------------QDM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|..|+|||||++++...... .++ ..|+......+..+++.+++|||+|+++|..
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~ 94 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGA 94 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHH
Confidence 599999999999999843221 111 1123333344667789999999999998765
Q ss_pred -------EEEEECCChhhHHH
Q psy2967 76 -------IYMVDAADTDKLEA 89 (101)
Q Consensus 76 -------i~v~d~~~~~sf~~ 89 (101)
++|+|.++....+.
T Consensus 95 l~~ad~~ilVvD~~~g~~~qt 115 (665)
T 2dy1_A 95 LEAADAALVAVSAEAGVQVGT 115 (665)
T ss_dssp HHHCSEEEEEEETTTCSCHHH
T ss_pred HhhcCcEEEEEcCCcccchhH
Confidence 89999887655443
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.49 E-value=1.1e-07 Score=65.46 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=22.8
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
.+|.+.+ +|++|||||||++++.+.++.
T Consensus 33 ~lp~I~v-vG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 33 SLPAIAV-VGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCCEEEE-ECBTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEE-ECCCCCcHHHHHHHHhCCCcC
Confidence 4665553 699999999999999998763
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.49 E-value=2.1e-07 Score=65.72 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=51.9
Q ss_pred eccCCCcceeeeeccccCcCC-CCCC-CccceEEEEEecCc-EEEEEEeeCCCCcc------------c----e---EEE
Q psy2967 21 MRKITKGNVTIWPVPLSGQFS-QDMI-PTVGFNMRKITKGN-VTIKVWDIGGQPRF------------R----S---IYM 78 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~-~~~~i~D~~G~~~~------------~----~---i~v 78 (101)
+|.+|||||||++.+...... ..+. .|...+...+...+ ..+.+||++|.... + . +.+
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~v 242 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYV 242 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEE
T ss_pred ECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEE
Confidence 599999999999999876321 1121 22333333344443 78899999997321 0 0 889
Q ss_pred EECCChhhHHHHHHHHHHHHH
Q psy2967 79 VDAADTDKLEASRNELHALIE 99 (101)
Q Consensus 79 ~d~~~~~sf~~~~~~~~~i~~ 99 (101)
+|++ +.+++++..|.+++..
T Consensus 243 vDls-~~~~~~ls~g~~el~~ 262 (416)
T 1udx_A 243 LDAA-DEPLKTLETLRKEVGA 262 (416)
T ss_dssp EETT-SCHHHHHHHHHHHHHH
T ss_pred eCCc-cCCHHHHHHHHHHHHH
Confidence 9998 7778888877777653
No 191
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3e-07 Score=64.24 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred ccccceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCcEEEEEEeeCCCCccce-------------
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------- 75 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------- 75 (101)
+.-.+.+++ ||.||||||||++++.+.... .+| ..|+......+...+..+++.|++|--+-..
T Consensus 69 k~g~a~V~i-vG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 69 RTGVASVGF-VGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp BCSSEEEEE-ECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred ecCCCeEEE-ECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 334566665 699999999999999975421 233 3455565566778889999999999643221
Q ss_pred ------EEEEECCChhh
Q psy2967 76 ------IYMVDAADTDK 86 (101)
Q Consensus 76 ------i~v~d~~~~~s 86 (101)
++|+|.+++..
T Consensus 148 ~~ad~il~vvD~~~p~~ 164 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLH 164 (376)
T ss_dssp HHCSEEEEEEETTSHHH
T ss_pred HhcCccccccccCccHH
Confidence 77899998743
No 192
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.35 E-value=2.2e-07 Score=62.45 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=21.3
Q ss_pred cceeeeEeccCCCcceeeeeccccCcC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~ 40 (101)
.|.+.+ +|.+|||||||++++++.++
T Consensus 24 ~~~I~v-vG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVV-VGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEE-EECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEE-EcCCCCCHHHHHHHHHCCCc
Confidence 455543 69999999999999998876
No 193
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.33 E-value=9.2e-08 Score=74.72 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=43.2
Q ss_pred eccCCCcceeeeeccccC-------cCCC-------CCCCccceEE----EEEecCcEEEEEEeeCCCCccce-------
Q psy2967 21 MRKITKGNVTIWPVPLSG-------QFSQ-------DMIPTVGFNM----RKITKGNVTIKVWDIGGQPRFRS------- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~-------~~~~-------~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~------- 75 (101)
+|.+++|||||++++... .+.. ..+.+.|..+ ..+...+..+.+|||+|+++|..
T Consensus 302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas 381 (1289)
T 3avx_A 302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAA 381 (1289)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSC
T ss_pred EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHh
Confidence 599999999999999863 1110 1123334332 23566778999999999998765
Q ss_pred -----EEEEECCChhh
Q psy2967 76 -----IYMVDAADTDK 86 (101)
Q Consensus 76 -----i~v~d~~~~~s 86 (101)
|+|+|.++...
T Consensus 382 ~AD~aILVVDAtdGv~ 397 (1289)
T 3avx_A 382 QMDGAILVVAATDGPM 397 (1289)
T ss_dssp CCSEEEEEEETTTCSC
T ss_pred hCCEEEEEEcCCccCc
Confidence 99999988643
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.30 E-value=7.2e-07 Score=61.37 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=21.9
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFS 41 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~ 41 (101)
.|.+. .+|+++||||||++++++.++.
T Consensus 31 ~~~I~-vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 31 LPQIA-VVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCEEE-EECBTTSSHHHHHHTTTTSCCS
T ss_pred CCeEE-EECCCCCCHHHHHHHHhCCCcC
Confidence 44444 3699999999999999988774
No 195
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.25 E-value=4.6e-07 Score=67.53 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=26.8
Q ss_pred EEEEEEeeCCCCccce---------------EEEEECCChhhHHHHHHHHHH
Q psy2967 60 VTIKVWDIGGQPRFRS---------------IYMVDAADTDKLEASRNELHA 96 (101)
Q Consensus 60 ~~~~i~D~~G~~~~~~---------------i~v~d~~~~~sf~~~~~~~~~ 96 (101)
..+.+|||+|...... |+|+|.++..+..+...|...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 3589999999543211 889999998888777666443
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=2.3e-06 Score=60.48 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=30.9
Q ss_pred eEeccCCCcceeeeeccccCcCCC-C-------CCCccceEEEE--Ee--cCcEEEEEEeeCCCCc
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQ-D-------MIPTVGFNMRK--IT--KGNVTIKVWDIGGQPR 72 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~-~-------~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~ 72 (101)
..+|++|||||||++.+.+..+.. . ..+|++..... ++ .....+.+||++|...
T Consensus 35 ~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 346999999999999999876531 1 12344433222 12 2235899999999865
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.02 E-value=1e-06 Score=59.63 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=26.2
Q ss_pred eEeccCCCcceeeeeccccC-cCCCCC--------CCccceEEEE--E--ecCcEEEEEEeeCCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSG-QFSQDM--------IPTVGFNMRK--I--TKGNVTIKVWDIGGQ 70 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~-~~~~~~--------~~t~~~~~~~--~--~~~~~~~~i~D~~G~ 70 (101)
..+|++|||||||++++... .++... .+|++..... + ......+.+||++|+
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 34699999999999997654 444332 2333322211 2 233578999999998
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.98 E-value=3.9e-06 Score=58.89 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=17.7
Q ss_pred eccCCCcceeeeeccccCcC
Q psy2967 21 MRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~ 40 (101)
+|.+|||||||++.+.+...
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTT
T ss_pred ECCCCCCHHHHHHHHHCCCc
Confidence 69999999999999998654
No 199
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.90 E-value=5.3e-07 Score=60.01 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=29.3
Q ss_pred EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCC
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~ 71 (101)
.+|.+|||||||++++.+.... .+.++.|... ..+.. +..+.+|||+|..
T Consensus 104 ~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 104 IVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp EEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred EeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence 4699999999999999976543 2333334322 11221 2368899999965
No 200
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.69 E-value=8e-06 Score=54.82 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=29.1
Q ss_pred eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCC
Q psy2967 19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP 71 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~ 71 (101)
..+|.+|||||||++++.+.... ...++.|... ..+.. +..+.+|||+|-.
T Consensus 124 ~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 124 LIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp EEEESTTSSHHHHHHHHHTSCCC-------------CCEEE-TTTEEEEECCCCC
T ss_pred EEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 44699999999999999976532 1222222111 11111 2257899999964
No 201
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.42 E-value=5.5e-05 Score=55.64 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=34.6
Q ss_pred EeccCCCcceeeeeccccCcCCCCC-----CCccceEEEEE---ecCcEEEEEEeeCCCCc
Q psy2967 20 NMRKITKGNVTIWPVPLSGQFSQDM-----IPTVGFNMRKI---TKGNVTIKVWDIGGQPR 72 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~~~~~~~-----~~t~~~~~~~~---~~~~~~~~i~D~~G~~~ 72 (101)
.+|.+|||||||++++.+....-.. ..|.+...... ...+..+.++||+|-..
T Consensus 43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3699999999999999976532122 23334322211 23567899999999753
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.42 E-value=3.2e-05 Score=49.18 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=18.6
Q ss_pred cceeeeEeccCCCcceeeeeccccC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~ 38 (101)
++.+. .+|.+|||||||++++...
T Consensus 30 ~~~i~-i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVN-IMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEE-EEECTTSCHHHHHHHHHHH
T ss_pred ceEEE-EEcCCCCCHHHHHHHHHHH
Confidence 44444 3599999999999998865
No 203
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.28 E-value=4.1e-06 Score=59.65 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=50.7
Q ss_pred cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCcc--ce------------
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRF--RS------------ 75 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~--~~------------ 75 (101)
.|.+-+.+|.+|+||||+.+++...-.. ...+|.+++... ..+......+||..|++.+ +.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445556799999999999998864321 223444443221 1122345578998887322 11
Q ss_pred --------EEEEECCChhhHHHHHHHHHHHH
Q psy2967 76 --------IYMVDAADTDKLEASRNELHALI 98 (101)
Q Consensus 76 --------i~v~d~~~~~sf~~~~~~~~~i~ 98 (101)
++|+|.++. +++....|+..+.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~ 146 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGE 146 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 899999988 5555556655443
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.21 E-value=3.7e-05 Score=49.05 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=23.6
Q ss_pred eccCCCcceeeeeccccCcCCCCCCCccce
Q psy2967 21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGF 50 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~ 50 (101)
+|.+|||||||++++....+...+.++++.
T Consensus 44 vG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp EESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 599999999999999987666555555553
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.09 E-value=0.0005 Score=50.05 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=49.0
Q ss_pred eeeeE-eccCCCcceeeeecccc--Cc----------------CCC------CCCCccceEEEEEecCcEEEEEEeeCCC
Q psy2967 16 TVGFN-MRKITKGNVTIWPVPLS--GQ----------------FSQ------DMIPTVGFNMRKITKGNVTIKVWDIGGQ 70 (101)
Q Consensus 16 ~~g~~-vG~~~vGKtsl~~~~~~--~~----------------~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (101)
+..+. +|-.++|||||+.++.. +. ..+ +.--|+......+.+++..+++.||+|+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 34444 48899999999998752 10 000 0011122222346778999999999999
Q ss_pred Cccce------------EEEEECCChhhHHHHHHH
Q psy2967 71 PRFRS------------IYMVDAADTDKLEASRNE 93 (101)
Q Consensus 71 ~~~~~------------i~v~d~~~~~sf~~~~~~ 93 (101)
..|.. |+|+|..+--.-+....|
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~ 145 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM 145 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence 98876 888888765444444444
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.72 E-value=0.0005 Score=47.26 Aligned_cols=23 Identities=17% Similarity=-0.026 Sum_probs=18.1
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+++++ +|.+|||||||++++..
T Consensus 79 ~~~I~i-~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 79 AHRVGI-TGVPGVGKSTAIEALGM 101 (355)
T ss_dssp SEEEEE-ECCTTSSHHHHHHHHHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHH
Confidence 445554 69999999999999863
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.66 E-value=0.0007 Score=46.34 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=17.6
Q ss_pred cceeeeEeccCCCcceeeeeccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
.+++++ +|.+|+|||||++.+.
T Consensus 56 ~~~i~i-~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 56 TLRLGV-TGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SEEEEE-EECTTSCHHHHHHHHH
T ss_pred CEEEEE-EcCCCCCHHHHHHHHH
Confidence 445554 6999999999999985
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.56 E-value=0.00038 Score=48.26 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=16.8
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
.+|.+|+|||||++.+.+.
T Consensus 167 ~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 167 VVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEcCCCCchHHHHHHHHhh
Confidence 4699999999999999865
No 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.51 E-value=0.00044 Score=47.96 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=16.7
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
.+|.+|+|||||++.+.+.
T Consensus 165 ~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 165 VVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp EEEBTTSSHHHHHHHHHHH
T ss_pred EecCCCCChhHHHHHHHhh
Confidence 4689999999999999865
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.42 E-value=0.006 Score=45.60 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=45.1
Q ss_pred eeeeE-eccCCCcceeeeeccccC--------cCCC--CCC------CccceEEE----EE-------ecCcEEEEEEee
Q psy2967 16 TVGFN-MRKITKGNVTIWPVPLSG--------QFSQ--DMI------PTVGFNMR----KI-------TKGNVTIKVWDI 67 (101)
Q Consensus 16 ~~g~~-vG~~~vGKtsl~~~~~~~--------~~~~--~~~------~t~~~~~~----~~-------~~~~~~~~i~D~ 67 (101)
+..++ +|-..+|||||+.+++.. +... .+. --.|+.++ .+ +.+++.+++.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 34444 488999999999887631 1110 011 01112221 11 124689999999
Q ss_pred CCCCccce------------EEEEECCChhhHHHHHHHHH
Q psy2967 68 GGQPRFRS------------IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 68 ~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~ 95 (101)
+|+..|.. |+|+|...--.-+.-.-|..
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~ 132 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ 132 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH
Confidence 99998876 88899876444333333433
No 211
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.33 E-value=0.008 Score=45.55 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=22.0
Q ss_pred ccceeeeEeccCCCcceeeeeccccCcC
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQF 40 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~ 40 (101)
..|.+. .+|..++|||||++.+++.++
T Consensus 50 ~lp~I~-vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIA-VVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEE-EEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEE-EECCCCCcHHHHHHHHhCCCc
Confidence 356555 369999999999999998776
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.21 E-value=0.00058 Score=46.95 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=19.0
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+++++ +|.+|||||||++++..
T Consensus 74 ~~~v~l-vG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGL-SGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHH
T ss_pred ceEEEE-EcCCCCCHHHHHHHHHH
Confidence 555554 69999999999999985
No 213
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.10 E-value=0.0026 Score=45.37 Aligned_cols=17 Identities=18% Similarity=0.172 Sum_probs=15.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+++|||+|++++.+
T Consensus 73 ~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 73 AGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhh
Confidence 49999999999999974
No 214
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.92 E-value=0.0013 Score=40.09 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=18.3
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+-+.+|.+|+||||+.+.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 44445569999999999998875
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.82 E-value=0.00074 Score=41.90 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=15.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++.+..
T Consensus 11 ~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999999875
No 216
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.81 E-value=0.0019 Score=47.81 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=42.4
Q ss_pred eccCCCcceeeeecccc--CcCCC-----------CCC-------CccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967 21 MRKITKGNVTIWPVPLS--GQFSQ-----------DMI-------PTVGFNMRKITKGNVTIKVWDIGGQPRFRS----- 75 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~--~~~~~-----------~~~-------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 75 (101)
+|-..+|||||+.++.. +.... ++. -|+......+.+++..+++.||+|+..|..
T Consensus 8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~ra 87 (638)
T 3j25_A 8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRS 87 (638)
T ss_dssp ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 47789999999988752 21111 010 111111123567889999999999998877
Q ss_pred -------EEEEECCCh
Q psy2967 76 -------IYMVDAADT 84 (101)
Q Consensus 76 -------i~v~d~~~~ 84 (101)
|+|+|..+-
T Consensus 88 L~~~DgavlVVDa~~G 103 (638)
T 3j25_A 88 LSVLDGAILLISAKDG 103 (638)
T ss_dssp HTTCSEEECCEESSCT
T ss_pred HHHhCEEEEEEeCCCC
Confidence 889998764
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.74 E-value=0.0015 Score=40.85 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.1
Q ss_pred ccceeeeEeccCCCcceeeeecccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++|++.+ +|.+|+|||||++++..
T Consensus 5 ~~~~i~i-~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAF-AAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEE-ECCTTSCHHHHHHHHHH
T ss_pred cceEEEE-EeCCCCCHHHHHHHHHH
Confidence 4566654 69999999999988774
No 218
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.64 E-value=0.0012 Score=40.74 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=12.9
Q ss_pred eccCCCcceeeeecc
Q psy2967 21 MRKITKGNVTIWPVP 35 (101)
Q Consensus 21 vG~~~vGKtsl~~~~ 35 (101)
+|++|||||||++.+
T Consensus 15 ~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 15 IGSSGSGKSTFAKKH 29 (171)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 588899999999953
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.56 E-value=0.0098 Score=42.99 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=15.1
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
.+|.+||||||++.++.
T Consensus 106 ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35999999999999987
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.55 E-value=0.002 Score=39.36 Aligned_cols=22 Identities=14% Similarity=-0.088 Sum_probs=16.8
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+-+.+|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3344469999999999887764
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.49 E-value=0.0012 Score=41.70 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+..
T Consensus 10 vGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 58899999999998764
No 222
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.44 E-value=0.0014 Score=40.53 Aligned_cols=18 Identities=17% Similarity=-0.062 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|+|||||++.+...
T Consensus 15 ~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EECTTSCHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 588899999999988653
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.36 E-value=0.0014 Score=40.96 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+.+
T Consensus 6 ~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58999999999987764
No 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.35 E-value=0.0014 Score=40.94 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=15.0
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++.+.+
T Consensus 13 ~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVK 29 (205)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHh
Confidence 59999999999988775
No 225
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.29 E-value=0.0015 Score=40.67 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++.+..
T Consensus 7 ~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp ESSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 69999999999998874
No 226
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.23 E-value=0.0016 Score=43.26 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=15.9
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 8 vG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EESSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999998863
No 227
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.16 E-value=0.0018 Score=41.01 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|||||||++.+.+
T Consensus 26 ~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 58999999999998764
No 228
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.12 E-value=0.0018 Score=41.73 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|||||||++.+.+.
T Consensus 22 ~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999987753
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.09 E-value=0.0019 Score=41.38 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++.+.+
T Consensus 29 vGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 58999999999998765
No 230
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.0014 Score=40.85 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=17.0
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+++++ +|++|+|||||++.+..
T Consensus 3 ~~v~I-vG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSI-VGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEE-EESCHHHHHHHHHHHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHH
Confidence 44443 68999999999988774
No 231
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.07 E-value=0.0033 Score=39.19 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=18.0
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++++++ +|.+|+|||||+.++..
T Consensus 4 ~~~i~i-~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQV-VGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHH
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHH
Confidence 555554 58999999999988764
No 232
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.02 E-value=0.0022 Score=40.60 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=13.6
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|+|||||++.+.
T Consensus 28 ~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLA 43 (208)
T ss_dssp ECCTTSCTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999997654
No 233
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.96 E-value=0.0061 Score=40.72 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=19.8
Q ss_pred ccceeeeEeccCCCcceeeeecccc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.-|.+-+.+|++||||||+.+++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3466666679999999999988763
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.94 E-value=0.0029 Score=39.64 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=15.6
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-+|.+|+||||+.+.+..
T Consensus 22 ~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 22 VVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999988754
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.89 E-value=0.0033 Score=39.58 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=15.9
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|++||||||+.+++..
T Consensus 16 ~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 16 VVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999998864
No 236
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.87 E-value=0.0048 Score=38.60 Aligned_cols=27 Identities=7% Similarity=-0.273 Sum_probs=19.9
Q ss_pred ccccceeeeEeccCCCcceeeeecccc
Q psy2967 11 QDMIPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
....|++-+-+|.+|+||||+.+.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555569999999999888764
No 237
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.80 E-value=0.005 Score=37.96 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=17.3
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+-+.+|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34444569999999999888753
No 238
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.80 E-value=0.0034 Score=39.63 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=15.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|||||||++++..
T Consensus 7 ~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999874
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.79 E-value=0.0038 Score=42.36 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+.+
T Consensus 96 ~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQA 112 (312)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHh
Confidence 59999999999987654
No 240
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.75 E-value=0.0033 Score=46.25 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=20.7
Q ss_pred ccceeeeEeccCCCcceeeeeccccCc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~ 39 (101)
.+|.+++ +|+.|||||||++.+.+-.
T Consensus 44 ~lp~iaI-vG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAV-IGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEEC-CCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEE-ECCCCChHHHHHHHHhCCC
Confidence 3566654 6999999999999988653
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.75 E-value=0.0033 Score=40.87 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 37 iG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 388899999999988753
No 242
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.75 E-value=0.0044 Score=40.12 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=15.5
Q ss_pred eEeccCCCcceeeeeccc
Q psy2967 19 FNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~ 36 (101)
..+|++||||||+++.+.
T Consensus 31 ~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 31 VILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 346999999999999887
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.66 E-value=0.0052 Score=39.19 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=15.6
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|++|||||||++.+..
T Consensus 24 l~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHh
Confidence 359999999999998874
No 244
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.66 E-value=0.004 Score=39.90 Aligned_cols=16 Identities=19% Similarity=0.015 Sum_probs=10.9
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|+.|||||||++.+.
T Consensus 33 ~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECSCC----CHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999988
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.62 E-value=0.0037 Score=40.32 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 36 iG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EECTTSCHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999988753
No 246
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.60 E-value=0.0051 Score=41.33 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=16.5
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++|||||||++.+.+..
T Consensus 175 ~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTC
T ss_pred ECCCCCcHHHHHHHhcccc
Confidence 6999999999999998643
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.59 E-value=0.0052 Score=36.94 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=13.9
Q ss_pred eccCCCcceeeeecc
Q psy2967 21 MRKITKGNVTIWPVP 35 (101)
Q Consensus 21 vG~~~vGKtsl~~~~ 35 (101)
+|.+||||||+.+.+
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999999988
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.58 E-value=0.0046 Score=39.17 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=15.7
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++||||||+++.+...
T Consensus 14 ~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp ECCTTSCHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 699999999999998754
No 249
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.57 E-value=0.0037 Score=43.36 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=16.6
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++|||||||++.+.+..
T Consensus 221 vG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCS
T ss_pred ECCCCccHHHHHHHHhccc
Confidence 5999999999999998644
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.56 E-value=0.0031 Score=39.33 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++||||||+++.+..
T Consensus 12 ~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988764
No 251
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.52 E-value=0.0038 Score=37.95 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+.+.+..
T Consensus 10 ~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58899999999988764
No 252
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.49 E-value=0.0067 Score=37.29 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=16.8
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+-+-.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 33334469999999999887653
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.48 E-value=0.0037 Score=40.01 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=14.3
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|+|||||++.+.
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 5888999999999877
No 254
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.46 E-value=0.0086 Score=37.58 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=15.2
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+|+||||+++.+..
T Consensus 26 i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999988765
No 255
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.43 E-value=0.0038 Score=39.46 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+..
T Consensus 31 ~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48889999999999875
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.40 E-value=0.0061 Score=36.79 Aligned_cols=17 Identities=6% Similarity=-0.384 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988764
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.40 E-value=0.0041 Score=41.89 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=14.9
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|||||||++.+.
T Consensus 171 ~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT 186 (302)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999988
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.37 E-value=0.0036 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.8
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|+.|+|||||++.+.+..
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 4888999999999887643
No 259
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.34 E-value=0.0048 Score=40.79 Aligned_cols=18 Identities=11% Similarity=-0.103 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 38 iG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999988854
No 260
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.32 E-value=0.0056 Score=39.66 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+.+
T Consensus 31 ~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIME 47 (245)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988765
No 261
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.31 E-value=0.0071 Score=40.92 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=18.9
Q ss_pred cceeeeEeccCCCcceeeeeccccC
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~~ 38 (101)
+|+..+ +|..|+|||||++.+...
T Consensus 4 i~v~~i-~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLL-TGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEE-EESSSSSCHHHHHHHHHS
T ss_pred ccEEEE-EecCCCCHHHHHHHHHhh
Confidence 555554 588899999999998854
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.27 E-value=0.007 Score=37.14 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=15.1
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+..|.+||||||+.+.+..
T Consensus 7 ~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3359999999999887654
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.23 E-value=0.0052 Score=40.01 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECSTTSSHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388999999999988753
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.22 E-value=0.0048 Score=40.34 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 30 iG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 588899999999988754
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.21 E-value=0.0053 Score=40.98 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 40 iGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 388999999999988753
No 266
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.21 E-value=0.005 Score=37.31 Aligned_cols=19 Identities=11% Similarity=-0.055 Sum_probs=15.8
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-.|++|+|||++++.+..
T Consensus 47 ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 47 VLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3459999999999988765
No 267
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.21 E-value=0.0035 Score=38.53 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+..
T Consensus 44 ~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.18 E-value=0.0054 Score=40.66 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 43 iG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ECCTTSCHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 388899999999998854
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.18 E-value=0.0054 Score=40.35 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 39 iG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998754
No 270
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.13 E-value=0.002 Score=43.79 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|||||||++.+...
T Consensus 179 vG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EESHHHHHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHhccc
Confidence 588899999999999864
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.12 E-value=0.0044 Score=38.96 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+.+
T Consensus 12 ~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 12 AGGTASGKTTLAQALAR 28 (211)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58889999999987654
No 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.10 E-value=0.0088 Score=36.95 Aligned_cols=17 Identities=12% Similarity=-0.066 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+||||+++.+..
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 58999999999998864
No 273
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.09 E-value=0.0067 Score=40.82 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+.+
T Consensus 86 ~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999987654
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.07 E-value=0.0059 Score=40.02 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 41 ~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388999999999998754
No 275
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.06 E-value=0.069 Score=38.24 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=35.0
Q ss_pred ceeeeE-eccCCCcceeeeeccc---c---------------CcCC---CCCCCccceEEEE----E---ecCcEEEEEE
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPL---S---------------GQFS---QDMIPTVGFNMRK----I---TKGNVTIKVW 65 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~---~---------------~~~~---~~~~~t~~~~~~~----~---~~~~~~~~i~ 65 (101)
|+.-+. +|+.++|||.|++.+. . ..|. .....|.|+-+.. + ++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 444444 4999999999999443 1 1222 1123456654421 1 3456889999
Q ss_pred eeCCCC
Q psy2967 66 DIGGQP 71 (101)
Q Consensus 66 D~~G~~ 71 (101)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999864
No 276
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.04 E-value=0.0054 Score=41.97 Aligned_cols=16 Identities=13% Similarity=-0.195 Sum_probs=14.7
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|.+|||||||++.+.
T Consensus 61 ~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 61 TGVPGVGKSTTIDALG 76 (337)
T ss_dssp ECCTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999986
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.02 E-value=0.006 Score=39.24 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 41 iG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999998753
No 278
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.01 E-value=0.0061 Score=40.38 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 56 iG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred EcCCCCcHHHHHHHHHcC
Confidence 388899999999988753
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.00 E-value=0.0062 Score=39.73 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388999999999988753
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.96 E-value=0.0063 Score=39.37 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 40 ~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988753
No 281
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.96 E-value=0.01 Score=41.84 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=17.6
Q ss_pred eeeeEeccCCCcceeeeeccccC
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~~ 38 (101)
.+++ +|++|+|||||++.+.+-
T Consensus 71 ~val-vG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAV-TGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEE-EECTTSSHHHHHHHHHTC
T ss_pred EEEE-ECCCCCcHHHHHHHHhCC
Confidence 3443 699999999999998863
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.95 E-value=0.0064 Score=39.62 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988854
No 283
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.93 E-value=0.0065 Score=43.10 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=16.6
Q ss_pred eccCCCcceeeeeccccCc
Q psy2967 21 MRKITKGNVTIWPVPLSGQ 39 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~~ 39 (101)
+|++|+|||||++.+.+-.
T Consensus 48 vG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCcc
Confidence 5999999999999988654
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.92 E-value=0.0076 Score=37.77 Aligned_cols=17 Identities=24% Similarity=0.046 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+||||+++.+..
T Consensus 35 ~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887753
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.91 E-value=0.0058 Score=39.10 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 588899999999988754
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.86 E-value=0.0068 Score=39.84 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 32 iG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 388899999999998753
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.85 E-value=0.0063 Score=37.12 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=13.9
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|.+|+||||+++.+.
T Consensus 14 ~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 14 MGVSGSGKSAVASEVA 29 (175)
T ss_dssp ECSTTSCHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5999999999988765
No 288
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.83 E-value=0.011 Score=39.11 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=17.9
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+-+.+|.+|+||||+.+++..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44444569999999999988775
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.82 E-value=0.007 Score=39.95 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 52 ~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 388999999999998753
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.79 E-value=0.0071 Score=39.90 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 47 ~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388899999999998854
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.77 E-value=0.0072 Score=40.14 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 51 ~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 388999999999988754
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.75 E-value=0.0067 Score=39.76 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998864
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.74 E-value=0.0074 Score=40.30 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 53 iG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 388899999999988753
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.73 E-value=0.011 Score=36.20 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887654
No 295
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.72 E-value=0.012 Score=38.13 Aligned_cols=21 Identities=10% Similarity=-0.114 Sum_probs=17.1
Q ss_pred eeeeEeccCCCcceeeeeccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~ 36 (101)
.+-+.+|.+||||||+++.+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 444456999999999999986
No 296
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.69 E-value=0.0058 Score=38.53 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+.+
T Consensus 7 ~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASE 23 (189)
T ss_dssp ESCCSSCHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHh
Confidence 57789999999988664
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.67 E-value=0.0071 Score=37.87 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+||||||+.+.+..
T Consensus 31 ~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999988763
No 298
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.65 E-value=0.0072 Score=36.54 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=15.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+..
T Consensus 42 ~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp ESSSTTTTCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998875
No 299
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.64 E-value=0.03 Score=36.46 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=17.0
Q ss_pred eeCCCCccce------------EEEEECCChhhHHHHHHHHHHH
Q psy2967 66 DIGGQPRFRS------------IYMVDAADTDKLEASRNELHAL 97 (101)
Q Consensus 66 D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i 97 (101)
+.+||+++|. |||+|.+|++.++ ++..+.++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL 150 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI 150 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHH
Confidence 3468888877 9999999998765 66666444
No 300
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.62 E-value=0.012 Score=36.57 Aligned_cols=19 Identities=5% Similarity=-0.258 Sum_probs=15.6
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+..|.+|+||||+.+.+..
T Consensus 8 ~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3459999999999988764
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.62 E-value=0.0079 Score=39.56 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ECCSSSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999988854
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.62 E-value=0.0073 Score=40.01 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 388899999999998864
No 303
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.59 E-value=0.0081 Score=39.73 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 39 iG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 388899999999998753
No 304
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.55 E-value=0.0076 Score=41.80 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++.+.+-
T Consensus 36 lGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EESTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 388999999999988854
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.52 E-value=0.013 Score=36.63 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=14.3
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|++|+||||+.+.+..
T Consensus 30 l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999876553
No 306
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.52 E-value=0.015 Score=35.58 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=15.3
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-.|.+||||||+.+.+..
T Consensus 10 ~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999887753
No 307
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.47 E-value=0.01 Score=38.64 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=17.7
Q ss_pred cceeeeEeccCCCcceeeeeccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
-|.+-+-+|.+|+||||+.+.+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45555557999999999987754
No 308
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.44 E-value=0.0077 Score=37.95 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=15.0
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+..
T Consensus 29 ~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999998874
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.44 E-value=0.012 Score=35.88 Aligned_cols=18 Identities=6% Similarity=-0.130 Sum_probs=11.0
Q ss_pred eEeccCCCcceeeeeccc
Q psy2967 19 FNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~ 36 (101)
+-.|.+||||||+.+.+.
T Consensus 9 ~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEECCC----CHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 345999999999998875
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.44 E-value=0.012 Score=35.67 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 8 VGARGCGMTTVGRELAR 24 (173)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999888764
No 311
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.33 E-value=0.014 Score=35.75 Aligned_cols=18 Identities=11% Similarity=-0.178 Sum_probs=14.9
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|.+||||||+.+.+..
T Consensus 9 l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999888763
No 312
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.27 E-value=0.015 Score=37.67 Aligned_cols=23 Identities=9% Similarity=-0.279 Sum_probs=17.7
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|++-+..|++||||||+.+++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44444469999999999988864
No 313
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.27 E-value=0.0078 Score=39.77 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+..
T Consensus 31 ~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMID 47 (261)
T ss_dssp ECSTTCSHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHH
Confidence 59999999999988764
No 314
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.25 E-value=0.013 Score=37.82 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=17.6
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+-+.+|+|||||+|...++..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 33445579999999998887764
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.25 E-value=0.01 Score=39.37 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=15.7
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 36 ~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999998854
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.24 E-value=0.014 Score=37.24 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=14.5
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
-+|.+||||||+.+++.
T Consensus 12 l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 12 IMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EEECTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35999999999998775
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.24 E-value=0.0093 Score=37.75 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+||||+.+.+..
T Consensus 11 ~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887753
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.22 E-value=0.0093 Score=41.28 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 47 lGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 388999999999988754
No 319
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.21 E-value=0.0094 Score=41.66 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++.+.+-
T Consensus 35 lGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHcC
Confidence 388999999999988854
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.20 E-value=0.012 Score=36.51 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+||||||+.+.+..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISK 22 (205)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 58899999999888764
No 321
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.17 E-value=0.0096 Score=41.25 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHCC
Confidence 388999999999988753
No 322
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.16 E-value=0.0097 Score=41.28 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 388999999999988754
No 323
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.15 E-value=0.0084 Score=36.32 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=15.9
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-.|++|+|||++++.+..
T Consensus 47 ll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEESCGGGCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4459999999999988764
No 324
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.09 E-value=0.017 Score=37.80 Aligned_cols=19 Identities=11% Similarity=-0.185 Sum_probs=15.4
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|.+||||||+.+.+..
T Consensus 8 vl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3459999999999887764
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.07 E-value=0.013 Score=37.16 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=15.3
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|.+||||||+.+.+..
T Consensus 9 ~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKT 27 (222)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999887753
No 326
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.06 E-value=0.01 Score=41.27 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCcHHHHHHHHHHcC
Confidence 388999999999998854
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.06 E-value=0.015 Score=35.89 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=16.1
Q ss_pred eeeEeccCCCcceeeeecccc
Q psy2967 17 VGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+-...|.+|+||||+.+.+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 333469999999999887764
No 328
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.04 E-value=0.009 Score=40.52 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+.+
T Consensus 57 ~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp ESSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999999988764
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.02 E-value=0.0091 Score=40.52 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=14.0
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|+|||||++.+.
T Consensus 132 vGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLI 147 (305)
T ss_dssp ECSSSSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHh
Confidence 5889999999998766
No 330
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.00 E-value=0.013 Score=36.97 Aligned_cols=17 Identities=6% Similarity=0.143 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 58 ~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACA 74 (242)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 331
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.98 E-value=0.0092 Score=39.58 Aligned_cols=17 Identities=6% Similarity=-0.117 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+.+
T Consensus 50 ~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ESSTTSCHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999988764
No 332
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.97 E-value=0.011 Score=38.18 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+..
T Consensus 55 ~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAG 71 (254)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998774
No 333
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.96 E-value=0.011 Score=41.19 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=15.0
Q ss_pred ccCCCcceeeeeccccC
Q psy2967 22 RKITKGNVTIWPVPLSG 38 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~~ 38 (101)
|+.|||||||++-+.+-
T Consensus 44 GpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 44 GPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CCTTSSHHHHHHHHHTS
T ss_pred CCCCChHHHHHHHHHcC
Confidence 88999999999988753
No 334
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.95 E-value=0.012 Score=39.60 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 70 ~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EESTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 388899999999988753
No 335
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.95 E-value=0.01 Score=37.79 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=15.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|+..+..
T Consensus 30 ~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 58999999999999876
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.87 E-value=0.017 Score=36.58 Aligned_cols=19 Identities=16% Similarity=-0.055 Sum_probs=15.2
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-+|.+||||||+.+.+..
T Consensus 8 ~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 8 VLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3459999999999887654
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.87 E-value=0.019 Score=39.17 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=15.5
Q ss_pred eeeeEeccCCCcceeeeeccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~ 36 (101)
++| .+|++|||||||++.+.
T Consensus 94 iig-I~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIG-IAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEE-EECCTTSSHHHHHHHHH
T ss_pred EEE-EECCCCCCHHHHHHHHH
Confidence 344 36999999999987764
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.86 E-value=0.019 Score=35.89 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=16.8
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
++++ +|.+||||||+.+.+..
T Consensus 4 ~i~l-~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGL-TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEE-ECSTTSCHHHHHHHHHT
T ss_pred EEEE-ECCCCCCHHHHHHHHHH
Confidence 3443 59999999999988865
No 339
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.84 E-value=0.014 Score=36.47 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=15.8
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-.|++|+|||++++.+..
T Consensus 49 ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 49 LFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3459999999999988764
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.82 E-value=0.0097 Score=37.15 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+||||||+.+.+..
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 58899999999987654
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.81 E-value=0.017 Score=35.54 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=14.9
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|.+||||||+.+.+..
T Consensus 14 l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999887753
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.78 E-value=0.018 Score=36.00 Aligned_cols=21 Identities=10% Similarity=-0.184 Sum_probs=16.3
Q ss_pred eeeEeccCCCcceeeeecccc
Q psy2967 17 VGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+-...|.+||||||+.+.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 333459999999999988764
No 343
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.74 E-value=0.012 Score=40.93 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++.+.+-
T Consensus 60 iGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHhcC
Confidence 388999999999887753
No 344
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.74 E-value=0.021 Score=35.21 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=14.7
Q ss_pred eEeccCCCcceeeeeccc
Q psy2967 19 FNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~ 36 (101)
..+|.+|+||||+.+.+.
T Consensus 17 ~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 345999999999988765
No 345
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.74 E-value=0.017 Score=36.21 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=15.6
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|++|+|||+|+..+..
T Consensus 25 i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 358999999999998875
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.72 E-value=0.0093 Score=40.96 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+.+
T Consensus 176 vG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAA 192 (365)
T ss_dssp ECCTTSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999987654
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.72 E-value=0.018 Score=35.97 Aligned_cols=18 Identities=11% Similarity=-0.206 Sum_probs=15.1
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-.|.+||||||+.+.+..
T Consensus 14 l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999988764
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.68 E-value=0.019 Score=35.23 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=15.1
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|.+||||||+.+.+..
T Consensus 10 l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999988764
No 349
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.66 E-value=0.015 Score=38.74 Aligned_cols=19 Identities=5% Similarity=-0.176 Sum_probs=15.5
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-.|+||+|||+|++.+..
T Consensus 40 Ll~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3349999999999988764
No 350
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.66 E-value=0.016 Score=37.93 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=14.4
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
.+|++|+|||||.+.+.
T Consensus 6 I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 6 IYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHH
Confidence 46999999999988765
No 351
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.53 E-value=0.016 Score=35.42 Aligned_cols=18 Identities=17% Similarity=-0.090 Sum_probs=15.2
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
..|.+|+||||+.+.+..
T Consensus 16 i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 359999999999988763
No 352
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.015 Score=41.24 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.2
Q ss_pred ceeeeEe-ccCCCcceeeeecccc
Q psy2967 15 PTVGFNM-RKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~v-G~~~vGKtsl~~~~~~ 37 (101)
|..|+-+ |+||+|||+|++.+..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 4556554 9999999999988764
No 353
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.51 E-value=0.017 Score=35.77 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=15.2
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-.|++|+|||++++.+..
T Consensus 43 l~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 43 FSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999988764
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.50 E-value=0.019 Score=38.45 Aligned_cols=17 Identities=6% Similarity=-0.298 Sum_probs=13.8
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
.+|++|||||||++.+.
T Consensus 36 I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35999999999986643
No 355
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.49 E-value=0.022 Score=39.97 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=18.6
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
|.+-+.+|.+|+||||+.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45555679999999999999874
No 356
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.49 E-value=0.022 Score=38.09 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=14.0
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+++++ .|++|+||||+.+.+..
T Consensus 6 ~iIgI-tG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISV-TGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEE-ESCC---CCTHHHHHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHH
Confidence 35554 39999999999887664
No 357
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.48 E-value=0.014 Score=35.68 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+.+.+..
T Consensus 10 ~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 10 IGFMGSGKSTLARALAK 26 (175)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999887653
No 358
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.47 E-value=0.014 Score=40.91 Aligned_cols=16 Identities=19% Similarity=0.244 Sum_probs=14.3
Q ss_pred ccCCCcceeeeecccc
Q psy2967 22 RKITKGNVTIWPVPLS 37 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~ 37 (101)
|+.|||||||++.+.+
T Consensus 54 GpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 54 GRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ESTTSSHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHhC
Confidence 8899999999988774
No 359
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.43 E-value=0.021 Score=35.43 Aligned_cols=17 Identities=12% Similarity=-0.113 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 10 ~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIME 26 (204)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999988775
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.42 E-value=0.02 Score=35.97 Aligned_cols=17 Identities=18% Similarity=-0.064 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988753
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.42 E-value=0.039 Score=35.35 Aligned_cols=18 Identities=17% Similarity=-0.073 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|..|+||||+++.+.+.
T Consensus 26 ~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 488899999999988753
No 362
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.41 E-value=0.0091 Score=41.18 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 32 lGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECCCTHHHHHHHHHHHTS
T ss_pred ECCCCccHHHHHHHHHcC
Confidence 388899999999988754
No 363
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.41 E-value=0.015 Score=38.76 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=15.8
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
..|++|+|||+|++.+...
T Consensus 36 i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 36 LLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHHH
Confidence 3599999999999988743
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.40 E-value=0.031 Score=34.74 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=14.5
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
..|.+||||||+.+.+.
T Consensus 20 l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35999999999987775
No 365
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.36 E-value=0.018 Score=35.35 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+.+.+..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887754
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.34 E-value=0.02 Score=37.89 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+..
T Consensus 41 ~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 58999999999988764
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.30 E-value=0.018 Score=36.73 Aligned_cols=19 Identities=11% Similarity=-0.186 Sum_probs=15.7
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-+|+|||||+|...++..
T Consensus 4 il~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3469999999999888764
No 368
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.27 E-value=0.022 Score=38.93 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=16.5
Q ss_pred eeeeEeccCCCcceeeeecccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.+-.-+|+.||||||+++.+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3334468899999999987664
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.26 E-value=0.014 Score=36.05 Aligned_cols=17 Identities=12% Similarity=-0.122 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+++..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998875
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.23 E-value=0.011 Score=40.08 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+..
T Consensus 86 vG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFR 102 (306)
T ss_dssp ESSSCHHHHHHHHHHTT
T ss_pred ECCCCchHHHHHHHHHc
Confidence 38999999999988764
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.21 E-value=0.022 Score=35.72 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=13.8
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|.+|+||||+++.+.
T Consensus 28 ~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLS 43 (201)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999987765
No 372
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.20 E-value=0.016 Score=38.63 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.4
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
..|++|+|||+|++.+..
T Consensus 35 i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 35 VLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999988764
No 373
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.14 E-value=0.014 Score=38.40 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|++.+..
T Consensus 79 ~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAG 95 (278)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCcChHHHHHHHHHH
Confidence 59999999999988774
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.05 E-value=0.025 Score=34.63 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=14.1
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
-+|+.|+|||||+..+.
T Consensus 31 i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 31 IVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEECTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35999999999988754
No 375
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.02 E-value=0.02 Score=39.00 Aligned_cols=18 Identities=11% Similarity=-0.064 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 177 ~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EESTTSCHHHHHHHGGGG
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488999999999988853
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.99 E-value=0.011 Score=37.11 Aligned_cols=17 Identities=12% Similarity=-0.156 Sum_probs=14.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+++.+..
T Consensus 6 ~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 47789999999988763
No 377
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.95 E-value=0.018 Score=38.80 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.5
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
..|++|+|||+|++.+..
T Consensus 50 i~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999998775
No 378
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.94 E-value=0.019 Score=39.70 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+.+
T Consensus 129 ~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999998764
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.93 E-value=0.025 Score=35.57 Aligned_cols=17 Identities=18% Similarity=-0.101 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||+.+.+..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988753
No 380
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.021 Score=40.63 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=18.3
Q ss_pred ceeeeEe-ccCCCcceeeeecccc
Q psy2967 15 PTVGFNM-RKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~v-G~~~vGKtsl~~~~~~ 37 (101)
|..|+-+ |+||+|||+|++.+..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 4566554 9999999999988764
No 381
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.68 E-value=0.0091 Score=41.24 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|||||||++-+.+-
T Consensus 37 lGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECSCHHHHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 388899999999988854
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.68 E-value=0.028 Score=37.93 Aligned_cols=17 Identities=12% Similarity=-0.183 Sum_probs=14.4
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
.+|+.||||||+++.+.
T Consensus 107 lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 107 VVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 35888999999998876
No 383
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.67 E-value=0.03 Score=37.87 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.8
Q ss_pred ceeeeE-eccCCCcceeeeecccc
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~ 37 (101)
|..++- .|++|+|||+|++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 444544 49999999999988774
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.66 E-value=0.019 Score=39.53 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+..
T Consensus 181 vG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQ 197 (361)
T ss_dssp EESSSSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 48999999999999875
No 385
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.022 Score=40.45 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=17.9
Q ss_pred ceeeeEe-ccCCCcceeeeecccc
Q psy2967 15 PTVGFNM-RKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~v-G~~~vGKtsl~~~~~~ 37 (101)
|..|+-+ |+||+|||+|++.+..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456543 9999999999988774
No 386
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.64 E-value=0.024 Score=36.65 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=15.0
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-.|++|+|||+|++.+..
T Consensus 50 l~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 50 MVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHH
Confidence 359999999999987764
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.61 E-value=0.034 Score=35.08 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999888754
No 388
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.59 E-value=0.028 Score=35.76 Aligned_cols=17 Identities=12% Similarity=-0.142 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|+.++..
T Consensus 29 ~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887754
No 389
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.55 E-value=0.025 Score=35.16 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|+..+..
T Consensus 60 ~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999987764
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.50 E-value=0.033 Score=34.55 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||+.+.+..
T Consensus 8 ~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 8 DGPSASGKSSVARRVAA 24 (208)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887754
No 391
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.49 E-value=0.03 Score=37.75 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=14.8
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|+.||||||+++.+..
T Consensus 105 lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 105 IVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 358889999999987664
No 392
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.49 E-value=0.021 Score=37.21 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=14.4
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++||||||+++.+.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 33 DGPSGAGKGTLCKALA 48 (252)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999998877
No 393
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.41 E-value=0.032 Score=34.42 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+||||||+.+.+..
T Consensus 16 ~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887654
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.41 E-value=0.036 Score=34.88 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=14.7
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+|+||||+.+.+..
T Consensus 30 ~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999987653
No 395
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.38 E-value=0.023 Score=39.32 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+||||+++.+..
T Consensus 142 vG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMID 158 (372)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999988774
No 396
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.36 E-value=0.023 Score=38.04 Aligned_cols=17 Identities=6% Similarity=0.137 Sum_probs=15.0
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 43 ~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999988774
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.32 E-value=0.028 Score=36.81 Aligned_cols=17 Identities=6% Similarity=-0.038 Sum_probs=15.0
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 57 ~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp ESSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999998864
No 398
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.25 E-value=0.037 Score=37.22 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.5
Q ss_pred ceeeeE-eccCCCcceeeeecccc
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~ 37 (101)
|..++- .|++|+|||+|++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 444544 49999999999988764
No 399
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=91.23 E-value=0.036 Score=37.76 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.0
Q ss_pred eCCCCccce------------EEEEECCChhhHHHHHHHHH
Q psy2967 67 IGGQPRFRS------------IYMVDAADTDKLEASRNELH 95 (101)
Q Consensus 67 ~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~ 95 (101)
.+||+++|. |||+|.+|+++++ +++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~ 233 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFS 233 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHH
Confidence 578988877 9999999998865 555554
No 400
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.21 E-value=0.025 Score=38.36 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=15.9
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
..|++|+|||+|++.+...
T Consensus 49 i~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 49 LLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3599999999999887743
No 401
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.20 E-value=0.032 Score=36.69 Aligned_cols=17 Identities=6% Similarity=-0.123 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|+..+..
T Consensus 36 ~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999988774
No 402
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.20 E-value=0.034 Score=35.47 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 6 ~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999888754
No 403
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.13 E-value=0.052 Score=35.35 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||+++.+..
T Consensus 30 eG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 30 EGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp ECSTTSSHHHHHTTTGG
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988874
No 404
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.10 E-value=0.04 Score=34.03 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+||||||+.+.+..
T Consensus 14 ~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988764
No 405
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.09 E-value=0.023 Score=38.32 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=15.5
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-.|++|+|||++++.+..
T Consensus 41 l~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 41 LYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EECSTTSSHHHHHHTHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 369999999999988765
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.06 E-value=0.035 Score=33.98 Aligned_cols=17 Identities=12% Similarity=-0.191 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988765
No 407
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.03 E-value=0.031 Score=36.86 Aligned_cols=17 Identities=6% Similarity=0.005 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 60 ~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVAT 76 (297)
T ss_dssp ESSSSSCHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 49999999999988764
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.98 E-value=0.045 Score=35.25 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+++++..
T Consensus 32 ~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYH 48 (229)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 409
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.96 E-value=0.031 Score=35.93 Aligned_cols=17 Identities=6% Similarity=-0.037 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 45 ~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 410
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.77 E-value=0.039 Score=33.17 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||+.+.+..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp ESCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58999999999888764
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.75 E-value=0.039 Score=34.77 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+||||||+.+.+..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999888764
No 412
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.73 E-value=0.027 Score=38.05 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 50 ~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CBCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988774
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.67 E-value=0.042 Score=35.17 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=14.8
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|.+|+||||+.+.+..
T Consensus 21 l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999887753
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.60 E-value=0.039 Score=39.90 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=15.5
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|+.|+||||+++.+.+
T Consensus 265 I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMM 282 (511)
T ss_dssp EEESTTSSHHHHHHHHGG
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 359999999999998874
No 415
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.60 E-value=0.047 Score=32.39 Aligned_cols=18 Identities=6% Similarity=-0.256 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|++|+|||++++.+...
T Consensus 33 ~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 33 TGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEETTCCHHHHHGGGCCT
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 599999999999887753
No 416
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.56 E-value=0.028 Score=38.59 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|+|||+|++.+...
T Consensus 137 ~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999988753
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.50 E-value=0.026 Score=38.84 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+.
T Consensus 77 iG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 488899999999888865
No 418
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.49 E-value=0.55 Score=31.37 Aligned_cols=23 Identities=13% Similarity=-0.086 Sum_probs=19.6
Q ss_pred EEEEECCChh-hHHHHHHHHHHHH
Q psy2967 76 IYMVDAADTD-KLEASRNELHALI 98 (101)
Q Consensus 76 i~v~d~~~~~-sf~~~~~~~~~i~ 98 (101)
++|||++++. +++.+.+|+..+.
T Consensus 84 liV~d~~~p~~s~~~l~~~l~~~~ 107 (302)
T 2yv5_A 84 IIVETLKMPEFNNYLLDNMLVVYE 107 (302)
T ss_dssp EEEECSTTTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Confidence 8899999986 8999999987653
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.48 E-value=0.043 Score=38.00 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=14.7
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|+.||||||++..+..
T Consensus 162 lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 162 IVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHh
Confidence 358889999999987664
No 420
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.48 E-value=0.028 Score=36.50 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 50 ~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp BCSSCSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999988764
No 421
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.43 E-value=0.04 Score=40.20 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 373 vG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPR 389 (578)
T ss_dssp ECSTTSSHHHHHTTTTT
T ss_pred ECCCCChHHHHHHHHhc
Confidence 39999999999988774
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.42 E-value=0.045 Score=34.64 Aligned_cols=17 Identities=12% Similarity=-0.072 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+||||||+.+.+..
T Consensus 11 ~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999887753
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.41 E-value=0.046 Score=35.66 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=16.6
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
|++-...|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3333345999999999998876
No 424
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.39 E-value=0.051 Score=36.03 Aligned_cols=17 Identities=6% Similarity=-0.167 Sum_probs=14.4
Q ss_pred EeccCCCcceeeeeccc
Q psy2967 20 NMRKITKGNVTIWPVPL 36 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~ 36 (101)
..|.+||||||+.+.+.
T Consensus 80 I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 80 LTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEECTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35999999999988765
No 425
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.38 E-value=0.057 Score=36.88 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.8
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.|.+-+.+|+.|||||+|...+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 444555679999999999988764
No 426
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.37 E-value=0.027 Score=38.07 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 52 ~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALAR 68 (340)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988765
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.37 E-value=0.045 Score=34.46 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.0
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
.++|+ .|.+||||||+.+.+..
T Consensus 13 ~iIgl-tG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGV-TGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEE-ECSTTSSHHHHHHHHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHH
Confidence 34554 59999999999888764
No 428
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.36 E-value=0.052 Score=33.11 Aligned_cols=17 Identities=12% Similarity=-0.086 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+.+.+..
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48889999999888764
No 429
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.34 E-value=0.032 Score=39.33 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=18.0
Q ss_pred ceeeeEe-ccCCCcceeeeecccc
Q psy2967 15 PTVGFNM-RKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~v-G~~~vGKtsl~~~~~~ 37 (101)
|..|+-+ |+||+|||.|++.+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Confidence 4456543 9999999999988764
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.33 E-value=0.028 Score=40.14 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 144 vGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 58889999999987664
No 431
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.31 E-value=0.045 Score=39.62 Aligned_cols=18 Identities=11% Similarity=-0.152 Sum_probs=14.6
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|..|||||||++.+..
T Consensus 298 LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCcccHHHHHHHHHH
Confidence 358889999999987653
No 432
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.29 E-value=0.039 Score=36.24 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 56 ~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAK 72 (310)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999987653
No 433
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.24 E-value=0.039 Score=40.33 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 376 vG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp ECCTTSSSTHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 39999999999998874
No 434
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.23 E-value=0.035 Score=39.19 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=15.1
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+||||+++.+.+
T Consensus 173 ~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999998875
No 435
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.20 E-value=0.044 Score=34.14 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=14.7
Q ss_pred eeEeccCCCcceeeeeccc
Q psy2967 18 GFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 18 g~~vG~~~vGKtsl~~~~~ 36 (101)
-+..|++|+|||+++.+..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3446999999999986554
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.18 E-value=0.034 Score=36.72 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=13.6
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
.|++|+|||++++.+.
T Consensus 73 ~G~~GtGKT~la~~la 88 (309)
T 3syl_A 73 TGNPGTGKTTVALKMA 88 (309)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999997544
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.09 E-value=0.03 Score=39.72 Aligned_cols=18 Identities=6% Similarity=-0.071 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|++|+|||||++.+.+.
T Consensus 163 vG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 488899999999888754
No 438
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.08 E-value=0.033 Score=33.63 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=16.8
Q ss_pred cceeeeEeccCCCcceeeeecccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+..+++ .|.+||||||+.+.+..
T Consensus 7 ~~~i~l-~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVL-IGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEE-ESCTTSSHHHHHHHHHH
T ss_pred cceEEE-ECCCCCCHHHHHHHHHH
Confidence 334443 59999999999988764
No 439
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.97 E-value=0.038 Score=40.28 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 375 vG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 375 VGRSGSGKSTIASLITR 391 (582)
T ss_dssp EECTTSSHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 38999999999998874
No 440
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.92 E-value=0.04 Score=37.68 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=15.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 58 ~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp TTCCSSSHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHH
Confidence 59999999999998874
No 441
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.86 E-value=0.045 Score=37.06 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 76 ~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 76 AGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.79 E-value=0.062 Score=32.32 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.4
Q ss_pred eEeccCCCcceeeeeccc
Q psy2967 19 FNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~ 36 (101)
+.+|+.|+|||+|+..+.
T Consensus 27 ~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 335999999999987754
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.79 E-value=0.04 Score=35.94 Aligned_cols=17 Identities=18% Similarity=0.011 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||++..+..
T Consensus 33 eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 33 EGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp EESTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999888653
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.79 E-value=0.065 Score=36.65 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.9
Q ss_pred ceeeeEeccCCCcceeeeecccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+-+.+|++|||||+|...+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 33444569999999999877653
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.74 E-value=0.038 Score=40.11 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=15.3
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 53 vG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999988753
No 446
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.72 E-value=0.063 Score=34.77 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|.+|+||||+.+.+..
T Consensus 28 ~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999877654
No 447
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.69 E-value=0.047 Score=37.01 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=15.5
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-.|++|+|||++++.+..
T Consensus 50 l~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 50 FLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999988874
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.62 E-value=0.047 Score=32.44 Aligned_cols=19 Identities=11% Similarity=-0.286 Sum_probs=15.7
Q ss_pred EeccCCCcceeeeeccccC
Q psy2967 20 NMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~~ 38 (101)
-.|++|+|||++++.+...
T Consensus 29 l~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 29 LYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EESSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 3599999999999887653
No 449
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.60 E-value=0.048 Score=35.57 Aligned_cols=17 Identities=6% Similarity=-0.079 Sum_probs=15.0
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 70 ~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAE 86 (272)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999988765
No 450
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.57 E-value=0.048 Score=39.96 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 387 vG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp ECCTTSSTTHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 48999999999988774
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.56 E-value=0.043 Score=39.86 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.6
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 31 iGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 588899999999988863
No 452
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.55 E-value=0.035 Score=38.70 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||||++.+..
T Consensus 175 ~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLE 191 (377)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999987653
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.55 E-value=0.04 Score=36.21 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|.+|+||||+.+.+..
T Consensus 54 ~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58899999999888754
No 454
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.54 E-value=0.049 Score=36.30 Aligned_cols=17 Identities=6% Similarity=-0.122 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 55 ~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 49999999999988774
No 455
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.39 E-value=0.04 Score=38.68 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=14.1
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|+|||+|+..++
T Consensus 184 ~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 184 FGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHH
Confidence 4889999999999775
No 456
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.35 E-value=0.045 Score=39.94 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 375 vG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTR 391 (582)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 48899999999998874
No 457
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.34 E-value=0.044 Score=39.31 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=18.2
Q ss_pred ceeeeEe-ccCCCcceeeeecccc
Q psy2967 15 PTVGFNM-RKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~v-G~~~vGKtsl~~~~~~ 37 (101)
|..|+-+ |+||+|||.|++.+..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh
Confidence 5566554 9999999999988764
No 458
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.31 E-value=0.033 Score=37.33 Aligned_cols=17 Identities=6% Similarity=-0.087 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 64 ~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 64 YGPPGTGKTSTILALTK 80 (353)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988764
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.28 E-value=0.068 Score=34.34 Aligned_cols=17 Identities=6% Similarity=-0.156 Sum_probs=14.4
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|++|+|||+|...+..
T Consensus 40 ~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQ 56 (205)
T ss_dssp ECCCTTTTHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999877764
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.22 E-value=0.038 Score=39.75 Aligned_cols=17 Identities=12% Similarity=-0.075 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+.+
T Consensus 35 iG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 58899999999987654
No 461
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.19 E-value=0.044 Score=36.18 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 53 ~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAA 69 (311)
T ss_dssp ESCSSSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 59999999999987664
No 462
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.15 E-value=0.062 Score=34.07 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=18.2
Q ss_pred ccceeeeEeccCCCcceeeeecc
Q psy2967 13 MIPTVGFNMRKITKGNVTIWPVP 35 (101)
Q Consensus 13 ~~~~~g~~vG~~~vGKtsl~~~~ 35 (101)
.++++-+..|.+|+|||+++..+
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHH
Confidence 45677777899999999987664
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.13 E-value=0.068 Score=36.59 Aligned_cols=19 Identities=5% Similarity=-0.116 Sum_probs=16.1
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+.+|+.|||||+|..++..
T Consensus 7 ~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 7 AIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCcCCHHHHHHHHHH
Confidence 3469999999999988874
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.11 E-value=0.074 Score=34.12 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.3
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|..|+||||+++.+..
T Consensus 8 ~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 8 EGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 38899999999888764
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.09 E-value=0.046 Score=39.33 Aligned_cols=15 Identities=7% Similarity=-0.201 Sum_probs=13.5
Q ss_pred eccCCCcceeeeecc
Q psy2967 21 MRKITKGNVTIWPVP 35 (101)
Q Consensus 21 vG~~~vGKtsl~~~~ 35 (101)
+|++|+|||||++.|
T Consensus 45 ~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQF 59 (525)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 588899999999995
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.02 E-value=0.077 Score=35.88 Aligned_cols=21 Identities=14% Similarity=-0.096 Sum_probs=15.9
Q ss_pred eeeEeccCCCcceeeeecccc
Q psy2967 17 VGFNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 17 ~g~~vG~~~vGKtsl~~~~~~ 37 (101)
+-..+|++|+||||++..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 334468899999999877653
No 467
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.00 E-value=0.077 Score=36.70 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=16.5
Q ss_pred eeeeEeccCCCcceeeeeccc
Q psy2967 16 TVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 16 ~~g~~vG~~~vGKtsl~~~~~ 36 (101)
..-+.+|.+++|||||++++.
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 344556999999999998863
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.99 E-value=0.057 Score=39.52 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++-+.+
T Consensus 375 vG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPR 391 (587)
T ss_dssp ECSSSSSHHHHHHTTTT
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 39999999999988774
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.98 E-value=0.074 Score=36.63 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=15.0
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|++|||||+|..++..
T Consensus 12 I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 12 IVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCcCcHHHHHHHHHH
Confidence 469999999999887664
No 470
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.96 E-value=0.064 Score=34.07 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|+||+|||+|+.+++.
T Consensus 36 ~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 36 TGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 49999999999988753
No 471
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.93 E-value=0.062 Score=38.20 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=15.1
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-+|++|+|||++++.+..
T Consensus 206 L~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 206 LIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EESCTTTTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 359999999999987664
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.89 E-value=0.048 Score=40.26 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 109 vGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGK 126 (608)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 588899999999988753
No 473
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.88 E-value=0.062 Score=35.64 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=14.5
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 44 ~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 44 FGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp ECCTTCCCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999987653
No 474
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.86 E-value=0.019 Score=37.33 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=14.2
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
+|+.|+|||||++.+..
T Consensus 33 ~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HSCCSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 48899999999987654
No 475
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.79 E-value=0.06 Score=36.08 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=15.3
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
-.|++|+|||++++.+..
T Consensus 60 l~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 60 FSGPAGLGKTTLANIISY 77 (338)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHH
Confidence 359999999999988764
No 476
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=88.70 E-value=0.088 Score=36.09 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.3
Q ss_pred ccCCCcceeeeecccc
Q psy2967 22 RKITKGNVTIWPVPLS 37 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~ 37 (101)
|..||||||+++.+..
T Consensus 11 G~dGsGKTT~~~~La~ 26 (331)
T 1e2k_A 11 GPHGMGKTTTTQLLVA 26 (331)
T ss_dssp SCTTSSHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHH
Confidence 8899999999988775
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.65 E-value=0.063 Score=33.72 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=16.9
Q ss_pred eEeccCCCcceeeeeccccC
Q psy2967 19 FNMRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~~ 38 (101)
+.+|.+++|||++..++...
T Consensus 3 lV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS
T ss_pred EEECCCCCcHHHHHHHHHhc
Confidence 45699999999999998854
No 478
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.60 E-value=0.073 Score=36.41 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 90 ~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 90 YGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999988764
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.59 E-value=0.078 Score=37.43 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.5
Q ss_pred ceeeeE-eccCCCcceeeeecccc
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~ 37 (101)
|..++- .|++|+|||+|++.+..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 434544 49999999999988774
No 480
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.53 E-value=0.081 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=17.5
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
|.+-+.+|.+||||||++..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 5555567999999999987765
No 481
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.53 E-value=0.071 Score=37.84 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=16.8
Q ss_pred ceeeeEeccCCCcceeeeeccc
Q psy2967 15 PTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 15 ~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
|.+-+.+|.+||||||++..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4444456999999999987765
No 482
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.47 E-value=0.058 Score=39.79 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=15.4
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++-+.+-
T Consensus 123 iG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCChHHHHHHHHhCC
Confidence 488899999999988763
No 483
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.36 E-value=0.078 Score=37.54 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=14.9
Q ss_pred EeccCCCcceeeeecccc
Q psy2967 20 NMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 20 ~vG~~~vGKtsl~~~~~~ 37 (101)
.+|.+||||||++..+..
T Consensus 104 ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp EECCSSSSTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 468899999999887664
No 484
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.18 E-value=0.062 Score=39.07 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=15.5
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
+|+.|+|||||++.+.+-
T Consensus 300 ~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 488899999999998863
No 485
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.04 E-value=0.06 Score=38.33 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=17.7
Q ss_pred ceeeeE-eccCCCcceeeeecccc
Q psy2967 15 PTVGFN-MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 15 ~~~g~~-vG~~~vGKtsl~~~~~~ 37 (101)
|..|+- .|+||+|||+|++.+..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHH
Confidence 345654 39999999999988764
No 486
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=87.85 E-value=0.098 Score=36.52 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.5
Q ss_pred ccCCCcceeeeecccc
Q psy2967 22 RKITKGNVTIWPVPLS 37 (101)
Q Consensus 22 G~~~vGKtsl~~~~~~ 37 (101)
|..||||||+++.+..
T Consensus 56 G~dGsGKTT~~~~Lae 71 (376)
T 1of1_A 56 GPHGMGKTTTTQLLVA 71 (376)
T ss_dssp SSTTSSHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999988775
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.80 E-value=0.076 Score=37.45 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 136 ~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 136 YGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988764
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.79 E-value=0.1 Score=32.89 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.3
Q ss_pred eEeccCCCcceeeeeccc
Q psy2967 19 FNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~ 36 (101)
+-+|+.|+||||++..+.
T Consensus 27 ~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 335999999999987753
No 489
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.76 E-value=0.088 Score=35.31 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=13.7
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|..|+||||++..+.
T Consensus 111 vG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5889999999987765
No 490
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.65 E-value=0.046 Score=35.31 Aligned_cols=16 Identities=6% Similarity=-0.114 Sum_probs=12.7
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
.|+||+|||+++..+.
T Consensus 64 ~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 64 CGPANTGKSYFGMSFI 79 (212)
T ss_dssp ESCGGGCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999997765544
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.65 E-value=0.066 Score=38.85 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=13.9
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|++|+|||+|++.+.
T Consensus 114 ~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIA 129 (543)
T ss_dssp ESSSSSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999987765
No 492
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.63 E-value=0.11 Score=37.64 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=17.8
Q ss_pred cceeeeEeccCCCcceeeeeccc
Q psy2967 14 IPTVGFNMRKITKGNVTIWPVPL 36 (101)
Q Consensus 14 ~~~~g~~vG~~~vGKtsl~~~~~ 36 (101)
.|.+-+.+|.+|+||||+.+++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34555567999999999988764
No 493
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.61 E-value=0.079 Score=36.22 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=14.7
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 78 ~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999987764
No 494
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.47 E-value=0.091 Score=36.19 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=13.8
Q ss_pred eccCCCcceeeeeccc
Q psy2967 21 MRKITKGNVTIWPVPL 36 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~ 36 (101)
+|+.|+|||||+..+.
T Consensus 29 ~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999998754
No 495
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.47 E-value=0.065 Score=35.88 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=14.6
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||++++.+..
T Consensus 51 ~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 51 FGDRGTGKSTAVRALAA 67 (350)
T ss_dssp ECCGGGCTTHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHH
Confidence 49999999999988764
No 496
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.36 E-value=0.084 Score=35.62 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=15.7
Q ss_pred eEeccCCCcceeeeecccc
Q psy2967 19 FNMRKITKGNVTIWPVPLS 37 (101)
Q Consensus 19 ~~vG~~~vGKtsl~~~~~~ 37 (101)
+-.|++|+|||++++.+..
T Consensus 42 ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEESCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3459999999999988764
No 497
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.14 E-value=0.085 Score=39.08 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=12.5
Q ss_pred eccCCCcceeeeecc
Q psy2967 21 MRKITKGNVTIWPVP 35 (101)
Q Consensus 21 vG~~~vGKtsl~~~~ 35 (101)
+|+.|+|||||++-+
T Consensus 354 iGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 354 TGVSGSGKSTLVNEV 368 (670)
T ss_dssp ECSTTSSHHHHHTTT
T ss_pred EeeCCCCHHHHHHHH
Confidence 388999999999643
No 498
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.10 E-value=0.088 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.008 Sum_probs=14.8
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 123 ~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp ESSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 499
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.09 E-value=0.11 Score=35.82 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=14.9
Q ss_pred eccCCCcceeeeecccc
Q psy2967 21 MRKITKGNVTIWPVPLS 37 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~ 37 (101)
.|++|+|||+|++.+..
T Consensus 154 ~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp ESSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988764
No 500
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.05 E-value=0.099 Score=35.19 Aligned_cols=18 Identities=6% Similarity=-0.008 Sum_probs=15.2
Q ss_pred eccCCCcceeeeeccccC
Q psy2967 21 MRKITKGNVTIWPVPLSG 38 (101)
Q Consensus 21 vG~~~vGKtsl~~~~~~~ 38 (101)
.|.||+|||+|+..+..+
T Consensus 74 ~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 74 AARPSMGKTAFALKQAKN 91 (315)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 499999999999887743
Done!