RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2967
(101 letters)
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 94.9 bits (237), Expect = 2e-26
Identities = 53/76 (69%), Positives = 62/76 (81%), Gaps = 12/76 (15%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84
SGQF++DMIPTVGFNMRKITKGNVTIK+WDIGGQPRFRS +YMVDAAD
Sbjct: 44 SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ 103
Query: 85 DKLEASRNELHALIEK 100
+K+EAS+NELH L++K
Sbjct: 104 EKIEASKNELHNLLDK 119
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 82.6 bits (205), Expect = 1e-21
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 12/69 (17%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
IPT+GFN+ +T N+ +VWD+GG R IY+VD+ D D++ S+
Sbjct: 35 TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK 94
Query: 92 NELHALIEK 100
+EL A++E+
Sbjct: 95 SELVAMLEE 103
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 82.3 bits (204), Expect = 2e-21
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
S SQ+++PT+GF++ K +++ V+D+ GQ R+R+ I+++D++D
Sbjct: 43 PSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD 102
Query: 84 TDKLEASRNELHALIE 99
++ ++ EL L+
Sbjct: 103 RLRMVVAKEELDTLLN 118
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 82.2 bits (204), Expect = 2e-21
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 38 GQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85
+ + + PT ++ GN+ +D+GG + R +++VDAAD +
Sbjct: 46 DRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 104
Query: 86 KLEASRNELHALIE 99
+ + +R EL AL
Sbjct: 105 RFDEARVELDALFN 118
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 80.4 bits (199), Expect = 1e-20
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
+PTVG N+ + N++ +VWD+GGQ R IY+VD+ D D++ ++
Sbjct: 50 TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK 109
Query: 92 NELHALIE 99
+EL+AL++
Sbjct: 110 HELYALLD 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 80.0 bits (198), Expect = 2e-20
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
+PT+ ++T +T +D+GG + R +++VD AD ++L S+
Sbjct: 54 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113
Query: 93 ELHALIE 99
EL +L+
Sbjct: 114 ELDSLMT 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 78.4 bits (194), Expect = 6e-20
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
+ PT GFN++ + + VWDIGGQ + R IY++D+AD + E +
Sbjct: 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103
Query: 92 NELHALIE 99
EL L+E
Sbjct: 104 QELTELLE 111
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 76.5 bits (189), Expect = 2e-19
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D +++ +R
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 93 ELHALIE 99
EL ++
Sbjct: 89 ELMRMLA 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 76.1 bits (188), Expect = 4e-19
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 43 DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEAS 90
PT+GFN+ ++ N+ + VWD+GGQ R I++VD+ D D++ +
Sbjct: 45 TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA 104
Query: 91 RNELHALIE 99
ELH +++
Sbjct: 105 SKELHLMLQ 113
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 76.1 bits (188), Expect = 6e-19
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
+G+ + PT+GFN++ + + +WD+GGQ RS I++VD+AD
Sbjct: 38 FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
Query: 84 TDKLEASRNELHALIE 99
+++ + EL +L+
Sbjct: 98 RQRMQDCQRELQSLLV 113
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 75.0 bits (185), Expect = 1e-18
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N+ VWD+GGQ + R I++VD+ D ++++ S +
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117
Query: 93 ELHALIE 99
EL +++
Sbjct: 118 ELQKMLQ 124
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 73.8 bits (182), Expect = 4e-18
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
PT+G N+ +I N +WDIGGQ RS I +VD+ D +++ +R
Sbjct: 45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104
Query: 93 ELHALIE 99
EL+ ++
Sbjct: 105 ELYKMLA 111
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 73.4 bits (181), Expect = 5e-18
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
PT+G N+ +I N +WDIGGQ RS I +VD+ D +++ +R
Sbjct: 50 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109
Query: 93 ELHALIE 99
EL+ ++
Sbjct: 110 ELYKMLA 116
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 72.6 bits (178), Expect = 1e-16
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPTVGFN+ +T NV VWD+GGQ + R I++VD AD D+++ +R
Sbjct: 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 93 ELHALIE 99
ELH +I
Sbjct: 411 ELHRIIN 417
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 70.3 bits (172), Expect = 4e-16
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 12/67 (17%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
IPT+GFN+ + N++ VWD+GGQ + R I++VD+ D +++ +R
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 93 ELHALIE 99
EL ++
Sbjct: 254 ELMRMLA 260
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 54.0 bits (130), Expect = 2e-10
Identities = 8/73 (10%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 45 IPTVGFNMRKITKGN---VTIKVWDIGGQPRFRS-------------IYMVDAADTDK-L 87
++ + N ++ + D+ G R +++VD+A + +
Sbjct: 36 QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREV 95
Query: 88 EASRNELHALIEK 100
+ L+ ++
Sbjct: 96 KDVAEFLYQVLID 108
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 51.3 bits (123), Expect = 1e-09
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 18/71 (25%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVDAA-DTDKL 87
+ + + + + D G + R I+MVD+ D KL
Sbjct: 77 VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 135
Query: 88 EASRNELHALI 98
+ L ++
Sbjct: 136 TTTAEFLVDIL 146
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 51.3 bits (123), Expect = 2e-09
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 18/71 (25%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVDAA-DTDKL 87
+ + + + + D G + R I+MVD+ D KL
Sbjct: 41 VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 99
Query: 88 EASRNELHALI 98
+ L ++
Sbjct: 100 TTTAEFLVDIL 110
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 49.7 bits (119), Expect = 7e-09
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 45 IPTVGFNMRKITKG-----NVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87
T+ F+ + G ++ + GQ + + +++ D+A ++L
Sbjct: 54 ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRL 112
Query: 88 EASRNELHALIEKL 101
A+ + + E L
Sbjct: 113 RANAESMRNMRENL 126
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 47.5 bits (114), Expect = 3e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 38 GQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPRFRSI 76
F + T+G F +R+IT GN+ + +WDIGGQ +
Sbjct: 29 ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 45.3 bits (108), Expect = 2e-07
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F D T+G F R I IK +WD GQ RFR++
Sbjct: 38 KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 45.3 bits (108), Expect = 2e-07
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ + T+G F R I TIK +WD G R+R+I
Sbjct: 52 NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 45.2 bits (108), Expect = 3e-07
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F D T+G F + I G +K +WD GQ RFRS+
Sbjct: 33 KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 45.3 bits (108), Expect = 3e-07
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F QD T+G F R + G T+K +WD GQ RFRS+
Sbjct: 48 NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 45.1 bits (107), Expect = 3e-07
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ D T+G F R + IK +WD GQ R+R+I
Sbjct: 36 NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 44.9 bits (107), Expect = 4e-07
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+FS D T+G F+ R + G +K +WD G R+R+I
Sbjct: 48 NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 44.4 bits (106), Expect = 4e-07
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ I T+G F +K+ G + +WD GQ RF ++
Sbjct: 29 NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 71
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 44.5 bits (106), Expect = 4e-07
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ I T+G F ++ + +K +WD GQ RFR+I
Sbjct: 26 DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 45.0 bits (107), Expect = 4e-07
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F +++ T+G F M+ + +WD GQ RFRSI
Sbjct: 51 NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 45.0 bits (107), Expect = 4e-07
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ + T+G F R I TIK +WD GQ R+R I
Sbjct: 28 NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 44.9 bits (107), Expect = 4e-07
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F ++ T+G F ++ I+ K +WD GQ RFR++
Sbjct: 38 DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL 80
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 44.4 bits (106), Expect = 4e-07
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
QF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 35 DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 77
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 44.5 bits (106), Expect = 5e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F T+G F R + IK +WD GQ FRSI
Sbjct: 44 KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 86
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 44.6 bits (106), Expect = 5e-07
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
++ D I T+G F ++ + T+K +WD GQ RFR+I
Sbjct: 31 DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 44.5 bits (106), Expect = 5e-07
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+ I T+G F +R I IK +WD GQ RFR+I
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 73
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 44.0 bits (105), Expect = 5e-07
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
GQF + T+G F + + + T+K +WD GQ R+ S+
Sbjct: 29 GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 44.5 bits (106), Expect = 5e-07
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
FS I T+G F +R + +K +WD GQ RFR+I
Sbjct: 32 NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 44.5 bits (106), Expect = 6e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F + TVG F ++ + I+ +WD GQ RF SI
Sbjct: 49 DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 44.6 bits (106), Expect = 6e-07
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
G F T+G F ++ + +K +WD GQ RFRSI
Sbjct: 49 GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 91
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 44.6 bits (106), Expect = 6e-07
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
G FS+ T+G F M+ + +K +WD GQ RFR+I
Sbjct: 52 GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 44.2 bits (105), Expect = 7e-07
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+ + TVG F ++ + + +K +WD GQ R+R+I
Sbjct: 46 DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 44.0 bits (104), Expect = 7e-07
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+++ PT+G F +++T T+K +WD GQ RF S+
Sbjct: 26 NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 44.0 bits (105), Expect = 7e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F ++ PT+G F + + N K +WD G RFR++
Sbjct: 29 DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL 71
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 44.1 bits (105), Expect = 8e-07
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F ++ PT+G F + + GN K +WD GQ RF S+
Sbjct: 46 DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 43.7 bits (104), Expect = 8e-07
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+ + TVG F ++ + + + IK +WD GQ R+R+I
Sbjct: 45 DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 43.8 bits (104), Expect = 9e-07
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F+ + TVG F ++ I + + IK +WD G R+R+I
Sbjct: 31 DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 43.8 bits (104), Expect = 9e-07
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 56 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 43.8 bits (104), Expect = 1e-06
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+++ I T+G F +R I TIK +WD GQ RFR+I
Sbjct: 39 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F + T+G F + + + +WD GQ RFRS+
Sbjct: 30 NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 43.9 bits (104), Expect = 1e-06
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+F+ I T+G F ++ + +K +WD GQ RFR+I
Sbjct: 43 DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 43.9 bits (104), Expect = 1e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F T+G F + + + T++ +WD G RFRS+
Sbjct: 39 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSL 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
F T+G F + + + T++ +WD GQ RFRS+
Sbjct: 37 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 43.5 bits (103), Expect = 1e-06
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
L+G+F + + T+G + IK VWD GQ +F +
Sbjct: 36 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 43.0 bits (102), Expect = 2e-06
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
+FS T+G F +++ + + +WD GQ RF+S+
Sbjct: 31 KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 42.7 bits (101), Expect = 2e-06
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 36 LSGQFSQDMIPTVG---FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
L G+F ++ TVG + + IK VWD GQ + +
Sbjct: 32 LDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL 77
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 42.1 bits (100), Expect = 3e-06
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
G F++D T+G F R+I + ++ +WD GQ F +I
Sbjct: 28 GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 70
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 41.5 bits (97), Expect = 7e-06
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 45 IPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS---------------IYMVDAADTDKLE 88
T I+ V ++WD GQ F IY++DA D
Sbjct: 53 ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA--QDDYM 110
Query: 89 ASRNELHALIEKL 101
+ LH + K
Sbjct: 111 EALTRLHITVSKA 123
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 40.6 bits (96), Expect = 1e-05
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 38 GQFSQD-MIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
G F I TVG F + + V +K +WD GQ RFRS+
Sbjct: 33 GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 40.7 bits (96), Expect = 1e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 75
G+F T+G F R + IK +WD GQ RFR
Sbjct: 43 GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 39.9 bits (94), Expect = 2e-05
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 38 GQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPRFRSI 76
++SQ T+G F +++T G+ VWD GQ RF+S+
Sbjct: 31 DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 39.6 bits (93), Expect = 4e-05
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 14/53 (26%)
Query: 38 GQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPRFRSI 76
+F+ I TVG F +++ + +WD GQ RFRS+
Sbjct: 48 NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 39.6 bits (92), Expect = 4e-05
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 19/76 (25%)
Query: 44 MIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS-----------------IYMVDAADTD 85
+ T+ + GN+T+ +WD GGQ F I++ D T+
Sbjct: 35 LGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTE 94
Query: 86 KLEASRNELHALIEKL 101
L+ +++L
Sbjct: 95 VLKDIE-IFAKALKQL 109
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 38.8 bits (91), Expect = 6e-05
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 37 SGQFSQDMIPTVG--FNMRKITKGNVTIKV----WDIGGQPRFRSI 76
+F +D T G + +T + T+ V D G ++
Sbjct: 44 GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 14/53 (26%)
Query: 38 GQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPRFRSI 76
G+F+ I TVG F +++ I +WD G RFRS+
Sbjct: 34 GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 15/60 (25%)
Query: 38 GQFSQDMIPTVGFNMRKIT------------KGNVTIKVWDIGGQPRFRSI---YMVDAA 82
F T G N+ WD GGQ + +M ++
Sbjct: 64 ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSS 123
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 36.6 bits (85), Expect = 3e-04
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 38 GQFSQDM--IPTVG--FNMRKIT---KGNVTIK--VWDIGGQPRFRSI 76
+ S TVG I K + VWD G+ F S
Sbjct: 25 TKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 36.3 bits (84), Expect = 4e-04
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 7 GQFSQDMIPTVG--FNMRKITKGNVTI--------WPVPLSGQFSQDMIPTVGFNMRKIT 56
F ++ T+G F + ++ I S ++I T N
Sbjct: 30 DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNEN 89
Query: 57 KGNVTIKVWDIGGQPRFRSI 76
N+ +WD GQ R+ SI
Sbjct: 90 LCNIKFDIWDTAGQERYASI 109
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 32.6 bits (75), Expect = 0.010
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 38 GQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFRSI---YMVDA 81
F + PT+ + RK + + D GQ + ++ YM
Sbjct: 27 NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 32.5 bits (75), Expect = 0.010
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 38 GQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFRSI---YMVDA-------ADT 84
F + PT+ + RK + + D GQ + ++ YM A
Sbjct: 26 NHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85
Query: 85 DKLEASRNELHALIEKL 101
+ S ++H E++
Sbjct: 86 NT--KSFEDIHQYREQI 100
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 32.1 bits (74), Expect = 0.015
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 37 SGQFSQDMIPTVG-FNMRKITKGNVTIK--VWDIGGQPRFRSI---YMVDAAD------- 83
F D PT+ + + + + + D GQ F ++ YM
Sbjct: 31 QSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAI 90
Query: 84 TDKLEASRNELHALIEKL 101
D+ S NE+ L ++
Sbjct: 91 NDR--QSFNEVGKLFTQI 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 32.1 bits (74), Expect = 0.016
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA 81
+F +D PT + RK + V I + D GQ + +I Y
Sbjct: 40 YDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 31.7 bits (73), Expect = 0.016
Identities = 7/49 (14%), Positives = 11/49 (22%), Gaps = 8/49 (16%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI----YM 78
Q R+I + V+DI Q +
Sbjct: 25 LQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCL 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 31.8 bits (73), Expect = 0.018
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 38 GQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFRSI---YMVDA 81
F + PT+ + RK + + D GQ + ++ YM
Sbjct: 44 NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 31.8 bits (73), Expect = 0.019
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA-------AD 83
F D PT+ + K T+ + + V D GQ F ++ YM +
Sbjct: 40 QKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 84 TDKLEASRNELHALIEKL 101
TDK AS + + +
Sbjct: 100 TDK--ASFEHVDRFHQLI 115
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 31.8 bits (73), Expect = 0.019
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 38 GQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA 81
+F +D PT + RK + V I + D GQ + +I Y
Sbjct: 37 DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 31.3 bits (72), Expect = 0.022
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 37 SGQFSQDMIPTVG-FNMRKITKGNVTIK--VWDIGGQPRFRSI---YMVDA 81
+G F + PT+ F ++I + + D G +F S+ Y+ +
Sbjct: 25 TGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 31.3 bits (72), Expect = 0.023
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 38 GQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA 81
+F +D PT + RK + V I + D GQ + +I Y
Sbjct: 27 DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 31.4 bits (72), Expect = 0.024
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA-------A 82
+ G F IPT+ R++ + T+++ D G +F ++ + +
Sbjct: 29 VKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFS 88
Query: 83 DTDKLEASRNELHALIEKL 101
T K S EL + + +
Sbjct: 89 VTSK--QSLEELGPIYKLI 105
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 31.3 bits (72), Expect = 0.024
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA 81
+ G F + IPTV R++ + T+++ D G +F ++ +
Sbjct: 24 VKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG 75
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 31.4 bits (72), Expect = 0.026
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 8/49 (16%)
Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI----YM 78
Q P R+I + V+DI Q +
Sbjct: 46 LQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCL 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.031
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 32/96 (33%)
Query: 5 LSGQFSQDMIPTVGFNM--RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN--- 59
+SG Q + G N+ RK P SG Q IP F+ RK+ N
Sbjct: 379 VSG-PPQSL---YGLNLTLRKAK--------AP-SGL-DQSRIP---FSERKLKFSNRFL 421
Query: 60 -VTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNEL 94
V P F S +V A+D + +N +
Sbjct: 422 PVAS--------P-FHSHLLVPASDLINKDLVKNNV 448
Score = 31.2 bits (70), Expect = 0.039
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQP--RFRSIY--MVDAADTDKLEASRNELHALIE 99
T GF++ I N GG+ R R Y M+ D + + E
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 100 KL 101
Sbjct: 1713 HS 1714
Score = 29.2 bits (65), Expect = 0.19
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 44/110 (40%)
Query: 24 ITKGNVTI-WPVP---------LSGQFSQDM-IPT-------------------VGFNMR 53
++ G++ VP L QF++ + PT +G+
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 54 KITKGNVTIKVWDIGGQPRFRSI--YMVDAADTDKLEASRNELHALIEKL 101
+ +F + + + L N++HAL KL
Sbjct: 71 LVEPSK----------VGQFDQVLNLCLTEFENCYL--EGNDIHALAAKL 108
Score = 25.4 bits (55), Expect = 4.5
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIG--GQ 70
T GF++ I N PV L+ F G ++I + N + +++ G+
Sbjct: 1653 FKDTYGFSILDIVINN----PVNLTIHFG-------GEKGKRIRE-NYSAMIFETIVDGK 1700
Query: 71 PRFRSIY-MVDAADTD-KLEASRNELHA 96
+ I+ ++ T + + L A
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 31.2 bits (71), Expect = 0.031
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSI 76
F ++ +PTV N +I + + +WD G P + ++
Sbjct: 29 KDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 71
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 31.3 bits (71), Expect = 0.031
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSI 76
+ F + IPTV N + V + +WD GQ + +
Sbjct: 52 TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL 94
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 31.0 bits (71), Expect = 0.035
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 38 GQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA-------ADT 84
G+FS+ PTV KI + + D GQ + + +++ + T
Sbjct: 47 GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVT 106
Query: 85 DKLEASRNELHALIEKL 101
S + +L +KL
Sbjct: 107 SL--HSFQVIESLYQKL 121
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 31.0 bits (71), Expect = 0.037
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA 81
GQF PT+ K+ N +++ D GQ + Y +D
Sbjct: 28 EGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 30.5 bits (70), Expect = 0.042
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDA 81
G F + PT+ + RK + + +++ D G +F ++ YM +
Sbjct: 25 QGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG 75
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 30.6 bits (70), Expect = 0.050
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMRKIT-KGN-VTIKVWDIGGQPRFRSIYM 78
L+G + Q+ P G ++I G + + D GG P + +
Sbjct: 41 LTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--FA 83
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 30.5 bits (69), Expect = 0.050
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSI 76
QF + +PTV N ++ V + +WD GQ + +
Sbjct: 47 KDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL 89
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 30.5 bits (70), Expect = 0.052
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 15/77 (19%)
Query: 38 GQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI---YMVDAAD-------T 84
G G + + ++ V+DI Q R + M T
Sbjct: 24 GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT 83
Query: 85 DKLEASRNELHALIEKL 101
DK S + L +L
Sbjct: 84 DK--GSFEKASELRVQL 98
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 30.2 bits (68), Expect = 0.073
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 37 SGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTD 85
+ + +PTV N + + V + +WD G P + ++ + +D+D
Sbjct: 49 KDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 30.0 bits (68), Expect = 0.091
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI 76
G+ +PTV N + K + +WD GQ + +
Sbjct: 45 KGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL 87
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 29.9 bits (68), Expect = 0.096
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRF--RSIYMVDAAD------- 83
L+ +F + PT+ R + V++++ D GQ R +M
Sbjct: 49 LTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDI 108
Query: 84 TDKLEASRNELHALIEKL 101
TD+ S E+ L L
Sbjct: 109 TDR--GSFEEVLPLKNIL 124
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 29.5 bits (67), Expect = 0.12
Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 9/50 (18%)
Query: 36 LSGQFSQDM----IPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSIYM 78
L +F T +K + + + + G P + +
Sbjct: 23 LIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK--FS 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 29.3 bits (66), Expect = 0.13
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 37 SGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTD 85
+ F + IPTV N + V + +WD GQ + + + TD
Sbjct: 27 TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 29.0 bits (65), Expect = 0.17
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVG--FNMRKITKGN-VTIKVWDIGGQPRFRSI 76
G F + PTV + + KG V + +WD GQ + +
Sbjct: 56 DGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL 98
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 28.7 bits (65), Expect = 0.20
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSI--YMVDA-------AD 83
L+ +F + P + + V ++V D R+ Y+ A +
Sbjct: 42 LTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSV 101
Query: 84 TDKLEASRNELHALIEKL 101
+ S + + +E L
Sbjct: 102 DSR--QSFDSSSSYLELL 117
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 28.9 bits (65), Expect = 0.22
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 37 SGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQP---RFRSIYMVDA 81
+ + + IPT N + + V +++ D GQ + R + +
Sbjct: 42 TNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 28.5 bits (64), Expect = 0.25
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSI 76
S F D +PTV N + V + +WD GQ + +
Sbjct: 30 SNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 28.2 bits (63), Expect = 0.32
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 37 SGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSI 76
+F + +PTV N ++ V + +WD GQ + +
Sbjct: 47 KDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 89
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 27.5 bits (62), Expect = 0.54
Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 3/47 (6%)
Query: 38 GQFSQDMIPT-VGFNMRKITKGNVTIK--VWDIGGQPRFRSIYMVDA 81
Q R +T V D + + ++
Sbjct: 27 KQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQES 73
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 27.4 bits (61), Expect = 0.62
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 38 GQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSI 76
F ++ +PTV N +I + + +WD G P + ++
Sbjct: 51 DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 92
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 27.4 bits (60), Expect = 0.84
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 42 QDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85
QD++ T G T ++ K++D+GGQ R I+ V +D D
Sbjct: 171 QDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 86 KLEASRNELHALIEKL 101
+ A E++ + E +
Sbjct: 231 LVLAEDEEMNRMHESM 246
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 26.9 bits (59), Expect = 1.3
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 26 KGNVTIWPVPLSGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFRSIYMVDAA 82
G + + F + IPTV N + V + +WD G + + +
Sbjct: 166 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 83 DTD 85
TD
Sbjct: 226 QTD 228
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 26.1 bits (57), Expect = 1.9
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 68 GGQPRFRSIYMVDAADTDKLEASRNELHALIE 99
G RF D LE + ++ I+
Sbjct: 101 HGAARFFRRTGEGVYDMVDLERATGKMADFIK 132
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 25.8 bits (57), Expect = 2.9
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 32 WPVPLSGQFSQDM-IPTVGFNMRKITKGNV--TIKVWDI 67
P+ + + G N TI ++D
Sbjct: 299 HLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA 337
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 25.4 bits (55), Expect = 4.0
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 42 QDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85
QD++ PT G + NV K+ D+GGQ R +++V +++ D
Sbjct: 179 QDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD 238
Query: 86 KLEASRNELHALIEKL 101
++ + + L E L
Sbjct: 239 QVLMEDRQTNRLTESL 254
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 25.0 bits (55), Expect = 6.1
Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 61 TIKVWDIG-GQPRF 73
T+KVW +G P F
Sbjct: 164 TVKVWSLGQSTPNF 177
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 24.5 bits (54), Expect = 7.2
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 61 TIKVWDIGGQ 70
+KVW+ Q
Sbjct: 195 RLKVWNTNFQ 204
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 24.4 bits (54), Expect = 8.0
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 61 TIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELH 95
T+++W + + + + K + + H
Sbjct: 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 24.4 bits (52), Expect = 8.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYM 78
+ T G K V ++D+GGQ R ++
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWI 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,326
Number of extensions: 78037
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 134
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)