RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2967
(101 letters)
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 39.8 bits (92), Expect = 8e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+ +F+ I T+G + + I V +++WD GQ RFR+I
Sbjct: 23 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 67
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 39.1 bits (90), Expect = 2e-05
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
++ D I T+G + + ++ V +++WD GQ RFR+I
Sbjct: 27 SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 71
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 35.9 bits (82), Expect = 2e-04
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSIYMVDAADTD 85
F+ I T+G + + ++ + +++WD GQ RFR+I
Sbjct: 27 SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 80
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 35.6 bits (81), Expect = 3e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
G F T+G + +I V +++WD GQ RFRSI
Sbjct: 26 TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 70
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 33.3 bits (75), Expect = 0.002
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
F+ + TVG + + + +++WD GQ R+R+I
Sbjct: 26 ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 32.8 bits (74), Expect = 0.003
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 40 FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIY 77
++ T G K V ++D+GGQ R +
Sbjct: 27 RILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKW 64
Score = 25.9 bits (56), Expect = 0.93
Identities = 12/86 (13%), Positives = 26/86 (30%)
Query: 9 FSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIG 68
++ T G K V + GQ + FN V +++
Sbjct: 27 RILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMV 86
Query: 69 GQPRFRSIYMVDAADTDKLEASRNEL 94
+ ++ + +A + K + L
Sbjct: 87 IREDNQTNRLQEALNLFKSIWNNRWL 112
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 31.0 bits (69), Expect = 0.013
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
F ++ T+G + + + + +WD GQ RFR++
Sbjct: 28 TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL 72
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.3 bits (67), Expect = 0.022
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 39 QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYM 78
+ PT G + NV K+ D+GGQ R +
Sbjct: 23 RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWF 62
Score = 24.1 bits (51), Expect = 3.6
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 8 QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDM 44
+ PT G + NV V + GQ S+
Sbjct: 23 RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERK 59
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 30.3 bits (67), Expect = 0.024
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIY 77
L PT+GFN+ ++ N+ + VWD+GGQ R +
Sbjct: 37 LQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYW 78
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 29.5 bits (65), Expect = 0.050
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 39 QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADT 84
Q G T ++ K++D+GGQ R ++
Sbjct: 21 QMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 66
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.1 bits (64), Expect = 0.055
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 51 NMRKITKGNVTIKVWDIGGQPRFRSI 76
+ + V +++WD GQ RFRS+
Sbjct: 47 KVLDVDGVKVKLQMWDTAGQERFRSV 72
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.7 bits (63), Expect = 0.10
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 36 LSGQFSQDMIPTVGFNMRKIT--------------KGNVTIKVWDIGGQPRFRSI 76
+F+ I TVG + R+ V +++WD GQ RFRS+
Sbjct: 26 TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 80
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.5 bits (60), Expect = 0.21
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSIYMVDAADTD 85
+F D T+G +++ + +++WD GQ RFR++
Sbjct: 25 TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 78
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 0.45
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 39 QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYM 78
+PT G +V ++ D+GGQ R ++
Sbjct: 24 IIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWI 63
Score = 26.4 bits (57), Expect = 0.52
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 8 QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDI 67
+PT G +V V + GQ S+ F V + +D
Sbjct: 24 IIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD- 82
Query: 68 GGQPRFRSIYMVDAADTDKLEASRNELHALIE 99
+V++ + +++E S+ +I
Sbjct: 83 --------QVLVESDNENRMEESKALFRTIIT 106
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.8 bits (55), Expect = 0.87
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYM 78
G+ IPT+GFN+ + N++ VWD+GGQ + R ++
Sbjct: 21 KLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 25.6 bits (55), Expect = 0.93
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 36 LSGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRS 75
+ +F D T+G V +++WD GQ RFRS
Sbjct: 26 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 23.7 bits (50), Expect = 4.6
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
+F+ + T+G ++ + ++WD GQ R+R I
Sbjct: 25 TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 69
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 23.1 bits (48), Expect = 8.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIY 77
+G+ + PT+GFN++ + + +WD+GGQ RS +
Sbjct: 22 FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,961
Number of extensions: 14827
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 24
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)