Query psy2968
Match_columns 173
No_of_seqs 129 out of 1269
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 22:10:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.8 1.3E-18 2.8E-23 140.1 11.7 144 3-146 157-346 (485)
2 KOG0253|consensus 99.7 1.3E-16 2.8E-21 123.3 8.0 76 2-77 204-282 (528)
3 KOG0254|consensus 99.6 6.2E-15 1.3E-19 121.1 11.6 144 2-146 182-370 (513)
4 PF00083 Sugar_tr: Sugar (and 99.5 6.6E-17 1.4E-21 130.1 -8.4 147 2-150 142-331 (451)
5 KOG0255|consensus 99.5 1.3E-12 2.9E-17 107.3 12.5 141 3-143 212-388 (521)
6 TIGR00898 2A0119 cation transp 99.4 1.8E-12 4E-17 105.9 12.6 140 3-142 221-392 (505)
7 TIGR00887 2A0109 phosphate:H+ 99.4 7.2E-12 1.6E-16 102.7 10.7 48 23-70 202-250 (502)
8 TIGR01299 synapt_SV2 synaptic 99.3 1.1E-11 2.3E-16 105.5 10.7 72 3-74 296-383 (742)
9 PRK10077 xylE D-xylose transpo 99.1 1.3E-09 2.8E-14 88.5 12.3 138 3-143 161-344 (479)
10 TIGR00879 SP MFS transporter, 98.7 1.5E-07 3.2E-12 75.5 11.5 67 3-69 168-240 (481)
11 PRK10642 proline/glycine betai 98.4 8.6E-07 1.9E-11 72.7 8.1 35 23-57 190-224 (490)
12 PRK10642 proline/glycine betai 98.3 8.2E-07 1.8E-11 72.8 4.7 62 8-69 389-458 (490)
13 PRK09952 shikimate transporter 98.2 4.1E-06 8.8E-11 67.8 7.4 55 3-57 166-231 (438)
14 TIGR00891 2A0112 putative sial 98.2 1.3E-05 2.8E-10 63.2 9.3 54 4-57 142-200 (405)
15 KOG0252|consensus 98.0 2.8E-06 6.1E-11 68.3 1.9 31 23-53 223-253 (538)
16 TIGR00895 2A0115 benzoate tran 98.0 3.6E-05 7.9E-10 60.4 7.8 65 4-69 147-215 (398)
17 KOG2533|consensus 97.9 5E-06 1.1E-10 68.3 1.7 133 5-140 177-348 (495)
18 PRK10406 alpha-ketoglutarate t 97.9 0.0001 2.2E-09 59.5 9.0 32 22-53 195-226 (432)
19 TIGR00883 2A0106 metabolite-pr 97.6 0.00028 6.1E-09 55.2 7.7 136 4-139 138-289 (394)
20 PRK11551 putative 3-hydroxyphe 97.6 0.0006 1.3E-08 54.2 9.0 136 4-140 145-290 (406)
21 TIGR02332 HpaX 4-hydroxyphenyl 97.5 0.00052 1.1E-08 55.1 8.2 48 3-50 137-194 (412)
22 PRK15075 citrate-proton sympor 97.3 0.002 4.3E-08 52.0 9.1 33 109-141 278-310 (434)
23 TIGR00903 2A0129 major facilit 97.2 0.0053 1.1E-07 48.7 10.5 50 3-52 119-172 (368)
24 PRK03893 putative sialic acid 97.2 0.003 6.4E-08 51.6 9.2 51 5-55 151-204 (496)
25 PRK12307 putative sialic acid 97.1 0.0024 5.1E-08 51.1 7.3 51 4-54 148-201 (426)
26 COG2271 UhpC Sugar phosphate p 97.1 0.00041 8.8E-09 55.5 2.8 48 3-50 158-211 (448)
27 TIGR00893 2A0114 d-galactonate 96.7 0.0027 5.8E-08 49.5 4.6 47 4-50 124-174 (399)
28 TIGR00899 2A0120 sugar efflux 96.4 0.019 4.1E-07 44.9 7.6 47 6-52 133-183 (375)
29 PRK11010 ampG muropeptide tran 96.2 0.043 9.3E-07 45.3 9.1 48 4-51 149-200 (491)
30 TIGR00901 2A0125 AmpG-related 96.2 0.042 9E-07 42.9 8.5 47 4-50 125-183 (356)
31 COG2814 AraJ Arabinose efflux 96.0 0.026 5.7E-07 45.2 6.5 41 5-46 148-189 (394)
32 TIGR00890 2A0111 Oxalate/Forma 95.9 0.036 7.7E-07 43.0 7.0 32 110-141 245-276 (377)
33 TIGR00894 2A0114euk Na(+)-depe 95.9 0.016 3.5E-07 47.1 5.2 46 5-50 174-224 (465)
34 PRK11902 ampG muropeptide tran 95.8 0.099 2.1E-06 41.7 9.1 47 5-51 137-187 (402)
35 PRK03545 putative arabinose tr 95.7 0.13 2.8E-06 40.8 9.5 28 110-137 246-273 (390)
36 PRK11663 regulatory protein Uh 95.6 0.052 1.1E-06 43.8 7.0 49 4-52 153-205 (434)
37 PRK10091 MFS transport protein 95.3 0.091 2E-06 41.6 7.4 33 109-141 239-271 (382)
38 PLN00028 nitrate transmembrane 95.2 0.082 1.8E-06 43.4 7.0 28 108-135 291-318 (476)
39 PRK11102 bicyclomycin/multidru 95.2 0.13 2.8E-06 40.3 7.8 31 110-140 235-265 (377)
40 TIGR00900 2A0121 H+ Antiporter 95.0 0.24 5.3E-06 38.2 8.9 31 110-140 252-282 (365)
41 TIGR00712 glpT glycerol-3-phos 94.9 0.089 1.9E-06 42.5 6.4 30 22-51 182-212 (438)
42 TIGR00886 2A0108 nitrite extru 94.9 0.15 3.3E-06 39.7 7.4 30 111-140 267-296 (366)
43 PRK12382 putative transporter; 94.6 0.45 9.8E-06 37.6 9.6 31 111-141 255-285 (392)
44 TIGR00710 efflux_Bcr_CflA drug 94.6 0.35 7.6E-06 37.8 8.9 31 110-140 247-277 (385)
45 TIGR00881 2A0104 phosphoglycer 94.4 0.04 8.6E-07 42.8 3.0 48 4-51 125-177 (379)
46 PRK15402 multidrug efflux syst 94.3 0.66 1.4E-05 36.9 10.0 28 113-140 259-286 (406)
47 PRK11273 glpT sn-glycerol-3-ph 94.3 0.19 4.2E-06 40.8 7.0 30 22-51 184-214 (452)
48 PRK05122 major facilitator sup 94.2 0.52 1.1E-05 37.3 9.2 31 110-140 254-284 (399)
49 TIGR00711 efflux_EmrB drug res 94.2 0.34 7.4E-06 39.3 8.3 32 110-141 296-327 (485)
50 PRK10473 multidrug efflux syst 94.1 0.27 5.8E-06 38.9 7.4 32 110-141 244-275 (392)
51 PTZ00207 hypothetical protein; 93.6 0.22 4.9E-06 42.2 6.3 67 4-70 161-232 (591)
52 TIGR00805 oat sodium-independe 93.6 0.39 8.4E-06 41.1 7.7 20 117-136 379-398 (633)
53 PRK11043 putative transporter; 93.5 0.77 1.7E-05 36.4 9.0 27 23-49 158-184 (401)
54 TIGR02718 sider_RhtX_FptX side 93.4 0.48 1E-05 37.5 7.7 42 6-47 141-185 (390)
55 PRK08633 2-acyl-glycerophospho 93.4 0.88 1.9E-05 41.3 10.1 32 110-141 274-305 (1146)
56 PRK09556 uhpT sugar phosphate 93.4 0.087 1.9E-06 43.0 3.4 32 109-140 298-329 (467)
57 PRK10489 enterobactin exporter 93.2 1.3 2.8E-05 35.5 9.8 47 5-51 153-202 (417)
58 PF07690 MFS_1: Major Facilita 93.1 0.093 2E-06 40.4 3.1 49 3-51 126-178 (352)
59 PRK10213 nepI ribonucleoside t 93.1 0.8 1.7E-05 36.5 8.5 46 5-50 151-200 (394)
60 KOG2532|consensus 93.0 0.5 1.1E-05 39.0 7.2 42 9-50 179-221 (466)
61 TIGR00792 gph sugar (Glycoside 92.3 0.71 1.5E-05 37.0 7.2 29 113-141 265-293 (437)
62 PRK09874 drug efflux system pr 92.0 1.4 3E-05 34.9 8.5 29 114-142 267-295 (408)
63 PRK15403 multidrug efflux syst 91.5 0.67 1.4E-05 37.3 6.3 44 7-50 149-196 (413)
64 TIGR00882 2A0105 oligosacchari 91.5 1.1 2.4E-05 35.5 7.4 29 114-142 263-291 (396)
65 cd06174 MFS The Major Facilita 89.9 0.67 1.5E-05 35.3 4.8 43 4-46 129-174 (352)
66 PRK09528 lacY galactoside perm 89.8 5.2 0.00011 32.0 10.0 28 113-140 270-297 (420)
67 PRK10133 L-fucose transporter; 89.7 1.9 4.1E-05 35.1 7.4 33 109-141 299-331 (438)
68 PRK03699 putative transporter; 88.2 3.3 7.1E-05 32.9 7.7 31 111-141 247-277 (394)
69 PRK14995 methyl viologen resis 87.8 1.3 2.9E-05 36.4 5.4 47 4-50 137-187 (495)
70 PRK15011 sugar efflux transpor 86.9 1.4 3.1E-05 35.0 5.0 44 6-49 151-198 (393)
71 TIGR00885 fucP L-fucose:H+ sym 86.2 5.8 0.00013 31.9 8.2 26 116-141 280-305 (410)
72 PRK09705 cynX putative cyanate 86.0 2.1 4.6E-05 34.0 5.6 33 109-141 244-276 (393)
73 TIGR00902 2A0127 phenyl propri 85.4 3 6.6E-05 32.9 6.1 31 113-143 248-278 (382)
74 PRK06814 acylglycerophosphoeth 85.2 9.2 0.0002 35.0 9.7 46 4-49 150-198 (1140)
75 PRK11195 lysophospholipid tran 85.1 17 0.00038 28.9 11.1 30 110-139 246-275 (393)
76 KOG1330|consensus 84.5 0.062 1.4E-06 43.9 -3.8 46 5-50 164-214 (493)
77 KOG3626|consensus 82.4 5 0.00011 35.1 6.4 26 23-48 320-345 (735)
78 PRK11652 emrD multidrug resist 82.1 4.3 9.2E-05 32.1 5.7 28 23-50 160-188 (394)
79 TIGR00889 2A0110 nucleoside tr 82.1 13 0.00028 29.9 8.5 35 109-143 255-289 (418)
80 TIGR00880 2_A_01_02 Multidrug 81.9 4.7 0.0001 26.0 5.1 44 5-48 94-141 (141)
81 PRK11128 putative 3-phenylprop 81.1 3 6.5E-05 32.9 4.5 44 5-48 135-181 (382)
82 TIGR00897 2A0118 polyol permea 80.0 27 0.00058 27.8 9.7 27 112-138 264-290 (402)
83 PF06609 TRI12: Fungal trichot 79.1 3.8 8.3E-05 35.0 4.6 26 23-48 194-221 (599)
84 PF13347 MFS_2: MFS/sugar tran 78.9 12 0.00027 30.0 7.4 32 112-143 267-298 (428)
85 KOG0055|consensus 74.4 38 0.00083 31.6 9.6 36 6-41 790-825 (1228)
86 PF11700 ATG22: Vacuole efflux 73.9 33 0.00072 28.5 8.7 30 106-135 318-347 (477)
87 PF11151 DUF2929: Protein of u 72.3 15 0.00032 21.0 4.5 41 9-49 13-56 (57)
88 KOG0255|consensus 72.0 1.9 4.1E-05 35.7 1.1 40 107-146 120-159 (521)
89 PF00083 Sugar_tr: Sugar (and 71.8 1.5 3.2E-05 35.4 0.4 36 109-144 50-85 (451)
90 TIGR00788 fbt folate/biopterin 69.2 12 0.00026 30.8 5.2 41 9-49 169-212 (468)
91 PRK10207 dipeptide/tripeptide 69.1 10 0.00023 31.4 4.8 31 3-33 148-181 (489)
92 TIGR01272 gluP glucose/galacto 67.0 13 0.00029 28.7 4.8 32 110-141 183-214 (310)
93 TIGR00898 2A0119 cation transp 65.9 4.6 0.0001 33.1 2.2 35 109-143 131-165 (505)
94 PF06645 SPC12: Microsomal sig 65.7 23 0.00049 21.5 4.6 35 3-37 13-47 (76)
95 PRK15034 nitrate/nitrite trans 65.0 60 0.0013 26.9 8.4 30 113-142 294-323 (462)
96 PRK05122 major facilitator sup 64.4 6.4 0.00014 31.1 2.6 33 110-142 56-88 (399)
97 PF11990 DUF3487: Protein of u 63.1 41 0.00088 22.4 5.9 21 5-26 32-52 (121)
98 PRK10077 xylE D-xylose transpo 62.8 4.5 9.8E-05 32.8 1.6 35 109-143 59-93 (479)
99 TIGR00893 2A0114 d-galactonate 61.7 8.8 0.00019 29.6 3.0 34 109-142 33-66 (399)
100 TIGR00890 2A0111 Oxalate/Forma 61.5 7.7 0.00017 29.9 2.6 33 110-142 43-75 (377)
101 PRK10406 alpha-ketoglutarate t 60.7 4.6 0.0001 32.5 1.3 27 116-142 74-100 (432)
102 PRK09584 tppB putative tripept 60.5 21 0.00045 29.7 5.0 34 4-37 156-192 (500)
103 TIGR00881 2A0104 phosphoglycer 60.0 6.9 0.00015 30.1 2.1 35 109-143 34-68 (379)
104 PRK11195 lysophospholipid tran 59.9 10 0.00022 30.2 3.1 33 111-143 44-76 (393)
105 TIGR00887 2A0109 phosphate:H+ 59.8 6.1 0.00013 32.6 1.8 33 109-141 60-92 (502)
106 TIGR00900 2A0121 H+ Antiporter 59.7 6.8 0.00015 30.1 2.0 34 109-142 38-71 (365)
107 PRK12382 putative transporter; 59.4 6.6 0.00014 31.0 1.9 32 111-142 57-88 (392)
108 cd06174 MFS The Major Facilita 59.1 11 0.00023 28.6 3.0 35 109-143 38-72 (352)
109 PRK11462 putative transporter; 58.1 1E+02 0.0022 25.2 8.8 28 112-139 270-297 (460)
110 PRK11551 putative 3-hydroxyphe 57.9 10 0.00022 30.0 2.7 34 109-142 54-87 (406)
111 COG2270 Permeases of the major 57.7 69 0.0015 26.4 7.3 36 106-141 289-324 (438)
112 KOG0252|consensus 57.6 9.4 0.0002 31.8 2.5 34 110-143 89-122 (538)
113 PF03137 OATP: Organic Anion T 56.4 3.7 7.9E-05 34.6 0.0 26 23-48 227-252 (539)
114 TIGR00891 2A0112 putative sial 56.2 7.7 0.00017 30.3 1.8 33 110-142 52-84 (405)
115 PF12832 MFS_1_like: MFS_1 lik 55.9 13 0.00028 22.5 2.4 30 111-140 41-70 (77)
116 KOG0569|consensus 55.5 11 0.00023 31.5 2.5 30 113-142 68-97 (485)
117 PF13428 TPR_14: Tetratricopep 53.8 31 0.00067 17.9 3.6 23 50-72 9-31 (44)
118 TIGR00886 2A0108 nitrite extru 53.6 10 0.00022 29.3 2.1 34 110-143 42-75 (366)
119 KOG1330|consensus 52.7 12 0.00026 31.1 2.3 35 109-143 72-106 (493)
120 TIGR00879 SP MFS transporter, 52.3 8.3 0.00018 30.7 1.4 34 109-142 75-108 (481)
121 PRK11273 glpT sn-glycerol-3-ph 52.3 15 0.00032 29.9 2.9 34 109-142 67-100 (452)
122 PRK10473 multidrug efflux syst 52.2 10 0.00022 29.9 1.9 32 111-142 44-75 (392)
123 PRK15403 multidrug efflux syst 52.1 12 0.00026 30.1 2.3 30 113-142 59-88 (413)
124 PF11460 DUF3007: Protein of u 51.9 63 0.0014 20.9 6.0 59 7-65 9-78 (104)
125 TIGR01299 synapt_SV2 synaptic 51.8 9.9 0.00021 33.5 1.9 32 111-142 208-239 (742)
126 KOG2615|consensus 51.5 9.1 0.0002 31.1 1.5 31 113-143 76-106 (451)
127 PRK12307 putative sialic acid 51.5 12 0.00025 29.9 2.2 34 110-143 58-91 (426)
128 PRK10504 putative transporter; 51.1 35 0.00076 27.6 4.9 29 114-142 306-334 (471)
129 TIGR00882 2A0105 oligosacchari 51.0 9.6 0.00021 30.2 1.6 31 110-140 43-73 (396)
130 PRK10429 melibiose:sodium symp 50.7 85 0.0018 25.7 7.1 29 113-141 274-302 (473)
131 PRK10697 DNA-binding transcrip 50.1 45 0.00097 22.2 4.3 31 39-69 57-87 (118)
132 PRK10054 putative transporter; 50.1 27 0.00058 27.8 4.0 42 7-48 141-185 (395)
133 PRK10054 putative transporter; 49.9 15 0.00032 29.3 2.5 32 111-142 49-80 (395)
134 KOG2615|consensus 49.5 14 0.0003 30.1 2.2 46 3-48 165-216 (451)
135 PRK15402 multidrug efflux syst 49.2 13 0.00029 29.4 2.2 32 111-142 54-85 (406)
136 PRK11652 emrD multidrug resist 48.7 12 0.00026 29.5 1.8 32 111-142 49-80 (394)
137 PF04024 PspC: PspC domain; I 48.4 33 0.00072 19.8 3.2 27 23-49 30-60 (61)
138 PRK10489 enterobactin exporter 48.4 17 0.00037 29.0 2.6 33 109-141 56-88 (417)
139 TIGR00892 2A0113 monocarboxyla 48.2 47 0.001 27.1 5.2 19 23-41 171-189 (455)
140 COG2211 MelB Na+/melibiose sym 48.1 62 0.0013 27.0 5.8 35 109-143 276-310 (467)
141 PF13041 PPR_2: PPR repeat fam 47.8 41 0.0009 17.8 3.5 22 51-72 12-33 (50)
142 TIGR00897 2A0118 polyol permea 47.8 13 0.00029 29.5 2.0 34 109-142 52-85 (402)
143 PRK10213 nepI ribonucleoside t 47.4 16 0.00034 29.1 2.3 32 112-143 62-93 (394)
144 TIGR00924 yjdL_sub1_fam amino 47.1 49 0.0011 27.3 5.2 34 4-37 147-183 (475)
145 PF12854 PPR_1: PPR repeat 46.9 21 0.00046 17.6 2.0 17 52-68 17-33 (34)
146 PRK09952 shikimate transporter 46.7 7.4 0.00016 31.5 0.3 27 116-142 75-101 (438)
147 PRK11646 multidrug resistance 46.3 44 0.00095 26.7 4.7 41 6-48 147-188 (400)
148 PF13829 DUF4191: Domain of un 46.0 91 0.002 23.2 5.8 59 12-70 40-99 (224)
149 TIGR00711 efflux_EmrB drug res 45.8 12 0.00027 30.3 1.5 34 109-142 41-74 (485)
150 PF15050 SCIMP: SCIMP protein 45.6 29 0.00063 23.0 2.9 19 49-67 31-49 (133)
151 PF01535 PPR: PPR repeat; Int 45.5 24 0.00053 16.1 2.1 19 52-70 10-28 (31)
152 PRK10091 MFS transport protein 45.3 19 0.00041 28.4 2.5 33 110-142 43-75 (382)
153 PRK11663 regulatory protein Uh 45.0 20 0.00044 28.9 2.6 32 111-142 64-95 (434)
154 TIGR00710 efflux_Bcr_CflA drug 44.6 16 0.00035 28.4 1.9 32 111-142 46-77 (385)
155 KOG4112|consensus 44.6 81 0.0018 20.0 4.6 24 3-26 28-51 (101)
156 TIGR00756 PPR pentatricopeptid 44.3 36 0.00077 15.8 3.7 21 51-71 9-29 (35)
157 PF13721 SecD-TM1: SecD export 44.2 36 0.00078 21.8 3.2 34 23-56 6-39 (101)
158 PRK15462 dipeptide/tripeptide 44.2 11 0.00024 31.5 1.0 34 110-143 50-84 (493)
159 PF07690 MFS_1: Major Facilita 44.1 8.6 0.00019 29.3 0.3 35 109-143 36-70 (352)
160 PRK11043 putative transporter; 43.5 18 0.00039 28.6 2.1 32 111-142 47-78 (401)
161 PF10183 ESSS: ESSS subunit of 43.4 60 0.0013 21.0 4.1 41 23-66 58-99 (105)
162 TIGR00883 2A0106 metabolite-pr 43.2 13 0.00029 28.7 1.3 25 118-142 48-72 (394)
163 PRK09669 putative symporter Ya 43.1 1.8E+02 0.0038 23.5 8.7 27 115-141 274-300 (444)
164 PRK11102 bicyclomycin/multidru 43.1 18 0.00039 28.2 2.0 33 110-142 31-63 (377)
165 PLN00028 nitrate transmembrane 43.0 18 0.00039 29.7 2.1 30 113-142 79-108 (476)
166 PRK09556 uhpT sugar phosphate 42.7 24 0.00052 28.7 2.7 28 113-140 72-99 (467)
167 TIGR00899 2A0120 sugar efflux 42.6 23 0.0005 27.4 2.5 25 114-138 42-66 (375)
168 PRK09874 drug efflux system pr 42.5 19 0.00041 28.3 2.1 31 112-142 61-91 (408)
169 PRK15075 citrate-proton sympor 42.4 9.2 0.0002 30.8 0.3 25 119-143 70-94 (434)
170 TIGR00712 glpT glycerol-3-phos 42.3 18 0.00038 29.2 1.9 33 109-141 65-97 (438)
171 TIGR00892 2A0113 monocarboxyla 41.9 14 0.00031 30.1 1.3 37 4-40 375-415 (455)
172 PRK10133 L-fucose transporter; 41.2 16 0.00035 29.7 1.5 34 109-142 65-98 (438)
173 TIGR00889 2A0110 nucleoside tr 41.1 77 0.0017 25.5 5.4 26 23-48 379-405 (418)
174 TIGR00896 CynX cyanate transpo 41.0 19 0.00041 27.9 1.8 34 109-142 39-72 (355)
175 KOG2513|consensus 40.9 2.2E+02 0.0048 24.7 7.9 28 40-67 588-617 (647)
176 TIGR00903 2A0129 major facilit 40.9 23 0.0005 28.1 2.3 28 112-139 33-60 (368)
177 PRK09528 lacY galactoside perm 40.3 57 0.0012 26.0 4.5 41 6-46 360-404 (420)
178 COG2223 NarK Nitrate/nitrite t 40.1 2.1E+02 0.0046 23.5 9.7 43 9-51 154-199 (417)
179 KOG0254|consensus 40.1 17 0.00038 30.1 1.5 35 109-143 93-127 (513)
180 PF01773 Nucleos_tra2_N: Na+ d 39.9 85 0.0018 18.9 4.8 29 9-37 1-35 (75)
181 PRK09705 cynX putative cyanate 39.6 20 0.00043 28.5 1.8 31 113-143 52-82 (393)
182 PF00664 ABC_membrane: ABC tra 39.0 1.4E+02 0.0031 21.3 7.5 22 22-43 139-160 (275)
183 TIGR00896 CynX cyanate transpo 39.0 61 0.0013 25.0 4.4 30 109-138 236-266 (355)
184 TIGR02332 HpaX 4-hydroxyphenyl 38.9 17 0.00037 29.2 1.3 31 112-142 50-80 (412)
185 PRK03545 putative arabinose tr 38.2 22 0.00048 28.0 1.8 29 113-141 52-80 (390)
186 TIGR00895 2A0115 benzoate tran 37.4 18 0.00039 28.0 1.2 31 112-142 59-89 (398)
187 PF07719 TPR_2: Tetratricopept 37.1 50 0.0011 15.4 3.6 21 52-72 11-31 (34)
188 TIGR02978 phageshock_pspC phag 36.8 1E+02 0.0022 20.6 4.5 29 23-51 30-64 (121)
189 PRK08633 2-acyl-glycerophospho 36.3 20 0.00044 32.7 1.5 30 112-141 54-83 (1146)
190 PRK03699 putative transporter; 35.9 19 0.00042 28.5 1.2 31 112-142 49-79 (394)
191 TIGR00885 fucP L-fucose:H+ sym 35.7 25 0.00053 28.3 1.7 34 109-142 42-75 (410)
192 TIGR03032 conserved hypothetic 35.6 11 0.00025 29.5 -0.2 11 43-53 202-212 (335)
193 TIGR01301 GPH_sucrose GPH fami 35.4 26 0.00057 29.1 1.9 32 110-141 44-79 (477)
194 PRK03893 putative sialic acid 35.2 21 0.00046 29.1 1.3 32 111-142 61-92 (496)
195 PRK03633 putative MFS family t 34.0 14 0.00031 29.0 0.1 32 110-141 46-77 (381)
196 PF07721 TPR_4: Tetratricopept 33.5 41 0.00088 15.3 1.7 15 52-66 11-25 (26)
197 PTZ00265 multidrug resistance 33.1 3.3E+02 0.0071 26.5 8.7 21 21-41 194-214 (1466)
198 PF06609 TRI12: Fungal trichot 32.2 52 0.0011 28.3 3.2 39 108-146 81-119 (599)
199 PF12273 RCR: Chitin synthesis 32.1 23 0.00051 23.7 0.9 13 25-37 1-13 (130)
200 TIGR00894 2A0114euk Na(+)-depe 32.0 37 0.00081 27.5 2.2 34 110-143 81-114 (465)
201 PRK14995 methyl viologen resis 31.4 23 0.00051 29.2 1.0 34 110-143 46-79 (495)
202 TIGR00924 yjdL_sub1_fam amino 30.7 31 0.00068 28.4 1.6 34 109-142 52-86 (475)
203 PF14715 FixP_N: N-terminal do 30.2 1E+02 0.0023 17.1 3.2 25 23-47 23-47 (51)
204 PRK11646 multidrug resistance 29.9 38 0.00082 27.0 1.9 29 115-143 56-84 (400)
205 PRK10207 dipeptide/tripeptide 29.6 29 0.00063 28.8 1.3 30 114-143 59-89 (489)
206 PF15061 DUF4538: Domain of un 29.6 55 0.0012 18.8 2.0 20 22-41 3-22 (58)
207 PF07069 PRRSV_2b: Porcine rep 28.8 1.2E+02 0.0027 17.5 3.4 16 18-33 38-53 (73)
208 PF13812 PPR_3: Pentatricopept 27.6 77 0.0017 14.7 3.3 18 53-70 12-29 (34)
209 PF02532 PsbI: Photosystem II 27.4 97 0.0021 15.8 3.4 23 114-136 10-32 (36)
210 PF14559 TPR_19: Tetratricopep 27.1 86 0.0019 17.5 2.7 21 52-72 1-21 (68)
211 PRK10504 putative transporter; 26.9 37 0.00079 27.5 1.4 30 112-141 52-81 (471)
212 KOG3312|consensus 26.9 1.9E+02 0.0042 20.1 4.6 32 44-75 29-60 (186)
213 PF06779 DUF1228: Protein of u 25.9 1.7E+02 0.0037 18.1 5.0 39 4-42 33-74 (85)
214 PF07672 MFS_Mycoplasma: Mycop 25.5 1.5E+02 0.0031 22.8 4.2 40 4-43 12-59 (267)
215 PF03845 Spore_permease: Spore 24.3 1.7E+02 0.0037 22.6 4.6 13 40-52 103-115 (320)
216 CHL00024 psbI photosystem II p 24.2 88 0.0019 16.0 1.9 22 115-136 11-32 (36)
217 PRK02655 psbI photosystem II r 24.2 84 0.0018 16.2 1.9 22 115-136 11-32 (38)
218 PRK11010 ampG muropeptide tran 23.1 1.5E+02 0.0033 24.5 4.4 26 23-48 380-405 (491)
219 cd00925 Cyt_c_Oxidase_VIa Cyto 23.0 83 0.0018 19.6 2.1 20 23-42 15-34 (86)
220 PF05977 MFS_3: Transmembrane 23.0 85 0.0019 26.5 2.9 33 113-145 53-85 (524)
221 COG5038 Ca2+-dependent lipid-b 22.5 1.7E+02 0.0037 27.4 4.6 38 23-60 177-214 (1227)
222 KOG3097|consensus 22.3 1.2E+02 0.0025 24.5 3.2 41 107-147 312-352 (390)
223 PF13374 TPR_10: Tetratricopep 21.9 1.2E+02 0.0025 14.7 3.1 22 51-72 11-32 (42)
224 TIGR01301 GPH_sucrose GPH fami 21.8 2.3E+02 0.0051 23.6 5.1 46 4-49 158-222 (477)
225 PF03034 PSS: Phosphatidyl ser 21.2 2.1E+02 0.0045 22.2 4.3 35 23-69 5-39 (280)
226 KOG2816|consensus 21.2 72 0.0016 26.5 2.0 35 113-147 70-104 (463)
227 PRK11902 ampG muropeptide tran 21.1 1.4E+02 0.003 23.7 3.6 22 23-44 367-388 (402)
228 PF13334 DUF4094: Domain of un 21.0 1.3E+02 0.0028 19.1 2.7 26 24-49 4-30 (95)
229 PHA00022 VII minor coat protei 21.0 47 0.001 15.8 0.6 19 2-20 5-23 (28)
230 PRK15462 dipeptide/tripeptide 20.9 2.3E+02 0.0049 23.8 4.9 29 7-35 147-178 (493)
231 PLN02930 CDP-diacylglycerol-se 20.8 1.8E+02 0.0039 23.3 4.0 35 23-69 69-103 (353)
232 KOG2563|consensus 20.6 69 0.0015 26.7 1.8 38 106-143 80-117 (480)
233 PF05631 DUF791: Protein of un 20.2 91 0.002 25.0 2.3 24 117-140 81-104 (354)
234 PF13181 TPR_8: Tetratricopept 20.1 1.2E+02 0.0025 14.1 3.1 21 52-72 11-31 (34)
235 PRK15471 chain length determin 20.1 1.9E+02 0.0042 22.8 4.1 30 16-45 23-52 (325)
236 TIGR00788 fbt folate/biopterin 20.0 2.1E+02 0.0046 23.5 4.6 20 28-47 428-447 (468)
No 1
>KOG0569|consensus
Probab=99.79 E-value=1.3e-18 Score=140.14 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHhhcccCChHHHHH-cCChHHHHHHHHHHHHHcCCCC
Q psy2968 3 IAIFFTLAASLLPWIAYYV-----ANWQYLCVITSLPLLVAVITPWIVPESARWLVS-QGRVDEAVVIMKRFEKINNKKV 76 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~-----~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~-kg~~~ea~~~l~~i~~~~~~~~ 76 (173)
.+++.++|.+++..++... ..|++++.+..+|+++.++...++|||||||+. ||+.+||+++++++++.++++.
T Consensus 157 ~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 157 LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh
Confidence 4566667777666555433 269999999999999999999999999999987 8999999999999996443222
Q ss_pred ChHH-HHHHHHHHHHHhhhh-----hhccccc----------------------------------cccccchhHHHHHH
Q psy2968 77 DPKL-YQQLKETCQRQAKQE-----IDGKRYS----------------------------------AVINPKLPLIILGM 116 (173)
Q Consensus 77 ~~~~-~~~~~~~~~~~~~~~-----~~~~~~~----------------------------------~~~~~~~~~i~~~~ 116 (173)
+.+. .++.++.+....+.. ...+..+ ....+.+.+...++
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI 316 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2111 111111111100000 0011111 23345677888999
Q ss_pred HHHHHHHHHHhcccccCCCCCcchHHhhhh
Q psy2968 117 IGILGGALCLFLPETLGQDLPQTLQDGENF 146 (173)
Q Consensus 117 ~~~~~~~~~~~l~d~~grr~~~~i~~~~~~ 146 (173)
++++.++++.+++||.|||++...+-..+.
T Consensus 317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMA 346 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999999988765444
No 2
>KOG0253|consensus
Probab=99.68 E-value=1.3e-16 Score=123.29 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCC
Q psy2968 2 SIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVD 77 (173)
Q Consensus 2 ~~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~ 77 (173)
++..+|.+|.++..+++++.. ||||......+|..+.....+++||||||++.+|+.+||.+.+++++++|+++.+
T Consensus 204 V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlp 282 (528)
T KOG0253|consen 204 VMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLP 282 (528)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCC
Confidence 345789999999999999874 9999999999999999999999999999999999999999999999999987644
No 3
>KOG0254|consensus
Probab=99.61 E-value=6.2e-15 Score=121.07 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=104.6
Q ss_pred chhhHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCC
Q psy2968 2 SIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVD 77 (173)
Q Consensus 2 ~~~~~~~~G~~~~~~l~~~~~----~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~ 77 (173)
..++++.+|.++++++++... +||+++++..+|+++..+..+++||||+||+++|+.+||+++++++++.+..+ .
T Consensus 182 ~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~-~ 260 (513)
T KOG0254|consen 182 LYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED-V 260 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc-h
Confidence 457888899999999999885 69999999999999988888899999999999999999999999999643222 2
Q ss_pred hHHHHHHHHHHHHHh---hh-----hhhcc-ccc-------------------------------ccccc-chhHHHHHH
Q psy2968 78 PKLYQQLKETCQRQA---KQ-----EIDGK-RYS-------------------------------AVINP-KLPLIILGM 116 (173)
Q Consensus 78 ~~~~~~~~~~~~~~~---~~-----~~~~~-~~~-------------------------------~~~~~-~~~~i~~~~ 116 (173)
..+..+++....... +. +...+ ..+ +..+. ....+..++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~ 340 (513)
T KOG0254|consen 261 EVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGV 340 (513)
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHH
Confidence 222222221100000 00 00001 000 22223 778889999
Q ss_pred HHHHHHHHHHhcccccCCCCCcchHHhhhh
Q psy2968 117 IGILGGALCLFLPETLGQDLPQTLQDGENF 146 (173)
Q Consensus 117 ~~~~~~~~~~~l~d~~grr~~~~i~~~~~~ 146 (173)
+++++++++.+++||+|||++...+.....
T Consensus 341 v~~~~t~~~~~lvd~~gRr~lll~s~~~m~ 370 (513)
T KOG0254|consen 341 VNFLGTLVATYLVDRFGRRKLLLFGAAGMS 370 (513)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence 999999999999999999999988765443
No 4
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.51 E-value=6.6e-17 Score=130.13 Aligned_cols=147 Identities=24% Similarity=0.455 Sum_probs=97.9
Q ss_pred chhhHHHHHHHHHHHHHHhcc---h---hHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCC
Q psy2968 2 SIAIFFTLAASLLPWIAYYVA---N---WQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKK 75 (173)
Q Consensus 2 ~~~~~~~~G~~~~~~l~~~~~---~---WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~ 75 (173)
..++++.+|.+++.++++... + ||+.+.++.+|+++.++..+++|||||||++|||.+||++.++++++.+..+
T Consensus 142 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 142 LFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED 221 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccc
Confidence 356677888888887776552 4 9999999999999888888999999999999999999999999976543221
Q ss_pred CChHHHHHHHHHHHHHhh-----hhhhcccc--c------------------------------cccccchhHHHHHHHH
Q psy2968 76 VDPKLYQQLKETCQRQAK-----QEIDGKRY--S------------------------------AVINPKLPLIILGMIG 118 (173)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~------------------------------~~~~~~~~~i~~~~~~ 118 (173)
++..++..+.++.... +....+.+ . +..+....+++.++..
T Consensus 222 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 299 (451)
T PF00083_consen 222 --EEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVN 299 (451)
T ss_pred --ccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111111111000 00011010 0 1122235566777888
Q ss_pred HHHHHHHHhcccccCCCCCcchHHhhhhcCCC
Q psy2968 119 ILGGALCLFLPETLGQDLPQTLQDGENFGRNQ 150 (173)
Q Consensus 119 ~~~~~~~~~l~d~~grr~~~~i~~~~~~~~~~ 150 (173)
+++.+++.++.||+|||.+...+.........
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~ 331 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSL 331 (451)
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 89999999999999999888777554443333
No 5
>KOG0255|consensus
Probab=99.45 E-value=1.3e-12 Score=107.32 Aligned_cols=141 Identities=27% Similarity=0.345 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCChHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ 82 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~~~~~~ 82 (173)
..+++..|.+...+.++.+.+||+.+++..+|+++.++..+..||||||++.+||.+||.+.++++.+.|+.........
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~ 291 (521)
T KOG0255|consen 212 GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELL 291 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHH
Confidence 35678899999999999999999999999999998887777777999999999999999999999998875443322111
Q ss_pred HHHHHHHHHhhhh--h--------hcc--ccc------------------------cccccchhHHHHHHHHHHHHHHHH
Q psy2968 83 QLKETCQRQAKQE--I--------DGK--RYS------------------------AVINPKLPLIILGMIGILGGALCL 126 (173)
Q Consensus 83 ~~~~~~~~~~~~~--~--------~~~--~~~------------------------~~~~~~~~~i~~~~~~~~~~~~~~ 126 (173)
......+...... . ..+ .+. -..+.+....+.+.+...+.....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~ 371 (521)
T KOG0255|consen 292 RLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNG 371 (521)
T ss_pred HHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHH
Confidence 1110100000000 0 000 000 123455666667778888888888
Q ss_pred hcccccCCCCCcchHHh
Q psy2968 127 FLPETLGQDLPQTLQDG 143 (173)
Q Consensus 127 ~l~d~~grr~~~~i~~~ 143 (173)
.+.|+.|||.....+..
T Consensus 372 ~~~~~~gR~~~~~~~~~ 388 (521)
T KOG0255|consen 372 LLLPEFGRRPPLFLSLF 388 (521)
T ss_pred HHHHHhCcHHHHHHHHH
Confidence 99999999988777654
No 6
>TIGR00898 2A0119 cation transport protein.
Probab=99.44 E-value=1.8e-12 Score=105.90 Aligned_cols=140 Identities=33% Similarity=0.594 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCChHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ 82 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~~~~~~ 82 (173)
.++++.+|.+++.++++.+.+||+.+++.+++.++..+..+++||||+|+..+++.+++.+.+++..+.|+.....+...
T Consensus 221 ~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 300 (505)
T TIGR00898 221 IQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLS 300 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 45678889999999998888999999999999888777778899999999999999999999999998876544333211
Q ss_pred HHHHHHHHHhh-----hhhh-ccccc--------------------------cccccchhHHHHHHHHHHHHHHHHhccc
Q psy2968 83 QLKETCQRQAK-----QEID-GKRYS--------------------------AVINPKLPLIILGMIGILGGALCLFLPE 130 (173)
Q Consensus 83 ~~~~~~~~~~~-----~~~~-~~~~~--------------------------~~~~~~~~~i~~~~~~~~~~~~~~~l~d 130 (173)
...+....... .... .+... -..+.+...++.++..+++.+++.++.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~d 380 (505)
T TIGR00898 301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLID 380 (505)
T ss_pred hhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000000 0000 00000 1223445556678888899999999999
Q ss_pred ccCCCCCcchHH
Q psy2968 131 TLGQDLPQTLQD 142 (173)
Q Consensus 131 ~~grr~~~~i~~ 142 (173)
|+|||....+..
T Consensus 381 r~grr~~~~~~~ 392 (505)
T TIGR00898 381 RLGRRYTMAASL 392 (505)
T ss_pred HhCCHHHHHHHH
Confidence 999998776654
No 7
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.35 E-value=7.2e-12 Score=102.65 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChH-HHHHHHHHHHH
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVD-EAVVIMKRFEK 70 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~-ea~~~l~~i~~ 70 (173)
+||+++.++++|+++.++.++++|||||||+.|||.+ ++.+.+++..+
T Consensus 202 ~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 202 MWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 6999999999999998888899999999999998874 57777777754
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.33 E-value=1.1e-11 Score=105.53 Aligned_cols=72 Identities=22% Similarity=0.520 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHHhc----------------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYV----------------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMK 66 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~----------------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~ 66 (173)
++.++.+|.+++..+++.+ .+||++++++++|.++.++..+++||||+||+.+||.+||.+.++
T Consensus 296 ~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~ 375 (742)
T TIGR01299 296 LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILK 375 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHH
Confidence 4566777877777654332 269999999999999888888899999999999999999999999
Q ss_pred HHHHHcCC
Q psy2968 67 RFEKINNK 74 (173)
Q Consensus 67 ~i~~~~~~ 74 (173)
++++.|++
T Consensus 376 ~i~~~n~~ 383 (742)
T TIGR01299 376 LIHDTNMR 383 (742)
T ss_pred HHhcCCCC
Confidence 99987754
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.11 E-value=1.3e-09 Score=88.48 Aligned_cols=138 Identities=18% Similarity=0.350 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKI 71 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~-----------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~ 71 (173)
.+.++.+|.+++++++..+ .+||+.+++.+++.++..+..+++||||+|+..+++.+++.+.++++.+.
T Consensus 161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence 3556677777776665432 27999999999888887777788999999999999988888777776532
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhhhhccccc-----------------------------------cccccchhHHHHHH
Q psy2968 72 NNKKVDPKLYQQLKETCQRQAKQEIDGKRYS-----------------------------------AVINPKLPLIILGM 116 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~i~~~~ 116 (173)
+. ..+..++..+............-... +........+..++
T Consensus 241 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~ 317 (479)
T PRK10077 241 TL---ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGV 317 (479)
T ss_pred hh---HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 11 11111111111100000000000000 01112234445677
Q ss_pred HHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 117 IGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 117 ~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.++++.++++++.||+|||.+......
T Consensus 318 ~~~i~~~~~g~l~dr~g~r~~~i~~~~ 344 (479)
T PRK10077 318 INLTFTVLAIMTVDKFGRKPLQIIGAL 344 (479)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHhHH
Confidence 888999999999999999987665443
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.75 E-value=1.5e-07 Score=75.52 Aligned_cols=67 Identities=24% Similarity=0.423 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHH---Hhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 3 IAIFFTLAASLLPWIA---YYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~---~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
.+.++.+|.+++..++ ... .+||+.+++..++.++.++..+++||+|+|+..+++.+++.+.+++..
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR 240 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHh
Confidence 3566788888888887 332 389999999888877777778889999999988888877777666654
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.45 E-value=8.6e-07 Score=72.66 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCC
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR 57 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~ 57 (173)
+||++|+++.++.++.++++.++||||+|+..+++
T Consensus 190 gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~ 224 (490)
T PRK10642 190 GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK 224 (490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh
Confidence 89999999887777777777789999999865443
No 12
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.30 E-value=8.2e-07 Score=72.76 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHc-----CChHHHHHHHHHHH
Q psy2968 8 TLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQ-----GRVDEAVVIMKRFE 69 (173)
Q Consensus 8 ~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~k-----g~~~ea~~~l~~i~ 69 (173)
..|.+...++++.. .+|+..+.+..+++++.++..+++||||+|++.+ ||.+||++++++++
T Consensus 389 ~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 389 LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 33443334444433 2588887777778777777777889999999865 99999999999997
No 13
>PRK09952 shikimate transporter; Provisional
Probab=98.24 E-value=4.1e-06 Score=67.76 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCC
Q psy2968 3 IAIFFTLAASLLPWIAYY-----------VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR 57 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~-----------~~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~ 57 (173)
.+.++.+|.+++..+... ..+||+++.+++++.++.+..+..+||||+|...+++
T Consensus 166 ~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~ 231 (438)
T PRK09952 166 VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE 231 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh
Confidence 345566666666544322 1389999999999887777777789999999865543
No 14
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.19 E-value=1.3e-05 Score=63.24 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHhcc-----hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCC
Q psy2968 4 AIFFTLAASLLPWIAYYVA-----NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR 57 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~~-----~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~ 57 (173)
+.++.+|.+++..++..+. +||+.+.+..++.++.++....+||+|++...+++
T Consensus 142 ~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (405)
T TIGR00891 142 ISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh
Confidence 4455666666666544331 49999999888877777777789999988754433
No 15
>KOG0252|consensus
Probab=97.99 E-value=2.8e-06 Score=68.27 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHH
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLV 53 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~ 53 (173)
-||..++++.+|+++.++.++.||||+||-.
T Consensus 223 vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~a 253 (538)
T KOG0252|consen 223 VWRIIFGLGAVPALLVLYFRLKMPETARYTA 253 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhHHH
Confidence 4999999999999999999999999999973
No 16
>TIGR00895 2A0115 benzoate transport.
Probab=97.97 E-value=3.6e-05 Score=60.39 Aligned_cols=65 Identities=23% Similarity=0.426 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHH-HHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSL-PLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~-~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
+....+|..+++.++-.+ .+||+.+.+.++ ..+..++..+++||+|++...+ +.+++.+..++..
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA 215 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHH
Confidence 445566666666654332 289999998854 4444555667799999988765 4455555555443
No 17
>KOG2533|consensus
Probab=97.89 E-value=5e-06 Score=68.27 Aligned_cols=133 Identities=19% Similarity=0.357 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHH-HHHhhcccCChH--HHHHcCChHHHHHHHHHHHHHc
Q psy2968 5 IFFTLAASLLPWIAYYV---------ANWQYLCVITSLPLLVA-VITPWIVPESAR--WLVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~---------~~WR~~~~i~~~~~~~~-~~~~~~lPESP~--wl~~kg~~~ea~~~l~~i~~~~ 72 (173)
.+..+|.++++++++.+ .+|||+|++.++.+++. ++..+++|+.|. |+..+.+.+ -..+++++.+
T Consensus 177 a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~---~~~~~~~~~~ 253 (495)
T KOG2533|consen 177 ASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKE---LVVERLRESP 253 (495)
T ss_pred HhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHH---HHHHHHHhcc
Confidence 34458888888888883 38999999998887765 455677999997 554332211 2234444333
Q ss_pred CCCCChH-HHHHHHHHHHHHhh-------hhhhccccc---------------cccccchhHHHHHHHHHHHHHHHHhcc
Q psy2968 73 NKKVDPK-LYQQLKETCQRQAK-------QEIDGKRYS---------------AVINPKLPLIILGMIGILGGALCLFLP 129 (173)
Q Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~~l~ 129 (173)
....+++ ...++.+....... .......+. +.......++...++++++.++++++.
T Consensus 254 ~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~ls 333 (495)
T KOG2533|consen 254 SGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLS 333 (495)
T ss_pred CCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHH
Confidence 3222221 11122211111000 000000110 233455666778899999999999999
Q ss_pred cc----cCCCCCcch
Q psy2968 130 ET----LGQDLPQTL 140 (173)
Q Consensus 130 d~----~grr~~~~i 140 (173)
|| ..+|.+...
T Consensus 334 dr~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 334 DRLKTIFARRLLFIV 348 (495)
T ss_pred HHHhhhHHHHHHHHH
Confidence 99 556654443
No 18
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.88 E-value=0.0001 Score=59.48 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCChHHHH
Q psy2968 22 ANWQYLCVITSLPLLVAVITPWIVPESARWLV 53 (173)
Q Consensus 22 ~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~ 53 (173)
.+||++|.+++++.++.++.+..+||||++..
T Consensus 195 ~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~ 226 (432)
T PRK10406 195 WGWRIPFALGAVLAVVALWLRRQLDETSQQET 226 (432)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 38999999999998887777888999998753
No 19
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.62 E-value=0.00028 Score=55.22 Aligned_cols=136 Identities=10% Similarity=0.035 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHc
Q psy2968 4 AIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~-----------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~ 72 (173)
+.+..+|.+++.+++... .+||+.+.+..+..++..+....+||+|++...+++.++..+.+..+.+.+
T Consensus 138 ~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (394)
T TIGR00883 138 QVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKH 217 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhc
Confidence 344556666655543321 279999999888777766666778999987654433222222222222111
Q ss_pred CCCCChHHHHHHH-HHHH---HHhhhhhhccccc-cccccchhHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968 73 NKKVDPKLYQQLK-ETCQ---RQAKQEIDGKRYS-AVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQT 139 (173)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~ 139 (173)
....-.-..-... .... ......-...... +...........++...++.++.+++.||+|||....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 0000000000000 0000 0000000000000 1112223344566778888889999999999987554
No 20
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.57 E-value=0.0006 Score=54.21 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH-HHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCChH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPK 79 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~-~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~~~ 79 (173)
+.+..+|.+++..++... .+||+.+++.++..++. .+...++||+|++...+++.++.....+.+.+.........
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (406)
T PRK11551 145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL 224 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHH
Confidence 445566777666665433 27999999877655544 44556789999887554332222222222211000000000
Q ss_pred HHHHH-HHH-HHHHh----hhhhhccccccccccchhHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 80 LYQQL-KET-CQRQA----KQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 80 ~~~~~-~~~-~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
..... ... ..... ......... +...........++..+++.++.+++.||+|||....+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 290 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLL 290 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 00000 000 00000 000000000 12223344556677888999999999999999866544
No 21
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.53 E-value=0.00052 Score=55.11 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy2968 3 IAIFFTLAASLLPWIAYYV---------ANWQYLCVITSLPLLVAV-ITPWIVPESAR 50 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~---------~~WR~~~~i~~~~~~~~~-~~~~~lPESP~ 50 (173)
++.++.+|.+++..++..+ .+||+.+.+.+++.++.. +..+++||+|+
T Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 137 FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3455666676666664332 389999999888876644 44567899994
No 22
>PRK15075 citrate-proton symporter; Provisional
Probab=97.31 E-value=0.002 Score=52.02 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
......++.++++.++.+++.||+|||......
T Consensus 278 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~ 310 (434)
T PRK15075 278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAF 310 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 344456677888899999999999999776553
No 23
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.23 E-value=0.0053 Score=48.75 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHH-HHHHhhcccCChHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESARWL 52 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~-~~~~~~~lPESP~wl 52 (173)
.+.+.++|.+++.+++..+ .+||+.+.+.++++++ .++.++++||+|++.
T Consensus 119 ~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~ 172 (368)
T TIGR00903 119 LSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA 172 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3456677777777776655 3999999997666554 455566799999874
No 24
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.21 E-value=0.003 Score=51.64 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHc
Q psy2968 5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQ 55 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~k 55 (173)
..+.+|.+++..++..+ .+||+.+.+..++.++.++....+||+++|...+
T Consensus 151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~ 204 (496)
T PRK03893 151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKH 204 (496)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhc
Confidence 34556666665554333 2899999988777776666677799999886543
No 25
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.08 E-value=0.0024 Score=51.14 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVS 54 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~ 54 (173)
+.++.+|.+++..+...+ .+||+.+++..++.++.+......||+++|...
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~ 201 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEA 201 (426)
T ss_pred HHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHh
Confidence 445666776666554332 289999999777766655555668999988643
No 26
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.00041 Score=55.53 Aligned_cols=48 Identities=10% Similarity=0.377 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHH---Hhcc--hhHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy2968 3 IAIFFTLAASLLPWIA---YYVA--NWQYLCVITSLPLLVA-VITPWIVPESAR 50 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~---~~~~--~WR~~~~i~~~~~~~~-~~~~~~lPESP~ 50 (173)
.+++.++|..+...+. ++.. +||..|+++++.+++. ++..+.+.++|+
T Consensus 158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4556677776666555 2222 8999999999887765 555666888884
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.70 E-value=0.0027 Score=49.49 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHH-hhcccCChH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT-PWIVPESAR 50 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~-~~~lPESP~ 50 (173)
+....+|.++++.++..+ .+||+.+.+.++..++..+. .+++||+|+
T Consensus 124 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 124 NSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 344556666666655432 38999999988776665444 445777663
No 28
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.38 E-value=0.019 Score=44.88 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHH-hhcccCChHHH
Q psy2968 6 FFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT-PWIVPESARWL 52 (173)
Q Consensus 6 ~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~-~~~lPESP~wl 52 (173)
..++|.+++..++..+ .+||+.+++.+++.++..+. .+++||+|++.
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA 183 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc
Confidence 3455666665554433 28999999988876665444 45589998653
No 29
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.21 E-value=0.043 Score=45.27 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy2968 4 AIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESARW 51 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~~~~~lPESP~w 51 (173)
+.++.+|.+++..++..+ .+||..+++.++..++..+..+++||+|+.
T Consensus 149 ~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~ 200 (491)
T PRK11010 149 VLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDT 200 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 455666776666554432 279999999888777766666678998753
No 30
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.16 E-value=0.042 Score=42.89 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHhc---ch--------hHHHHHHHHHHHHHHHHHhh-cccCChH
Q psy2968 4 AIFFTLAASLLPWIAYYV---AN--------WQYLCVITSLPLLVAVITPW-IVPESAR 50 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~--------WR~~~~i~~~~~~~~~~~~~-~lPESP~ 50 (173)
+.++.+|.++++.++..+ .+ ||..+.+.++..++..+..+ ..||+++
T Consensus 125 ~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 125 IVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 456677777777665433 14 99999999888777665555 4688643
No 31
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.026 Score=45.24 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hhccc
Q psy2968 5 IFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVIT-PWIVP 46 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~-~~~lP 46 (173)
+...+|..++..++-.+ |||..|+.-+..+++.++. ...+|
T Consensus 148 lA~v~GvPLGt~ig~~~-GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 148 LATVLGVPLGTFLGQLF-GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhccHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445666666666666 9999999988887775544 55688
No 32
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=95.92 E-value=0.036 Score=43.00 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.....++..+++.++.+++.||+|||....+.
T Consensus 245 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 276 (377)
T TIGR00890 245 AVSISSIFNGGGRPFLGALSDKIGRQKTMSIV 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 34456777888999999999999999776554
No 33
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=95.89 E-value=0.016 Score=47.05 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHH-hhcccCChH
Q psy2968 5 IFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVIT-PWIVPESAR 50 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~~-~~~lPESP~ 50 (173)
.+..+|.+++..++..+ .+||+.+++.+++.++..+. .++.||+|+
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 33455555555553322 38999999998887765544 445778885
No 34
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=95.78 E-value=0.099 Score=41.70 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy2968 5 IFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESARW 51 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~~~~~lPESP~w 51 (173)
.++.+|.+++..++..+ .+||..+++.++..++..+..+++||+++.
T Consensus 137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~ 187 (402)
T PRK11902 137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP 187 (402)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44566666666554332 289999999887766665566678988754
No 35
>PRK03545 putative arabinose transporter; Provisional
Probab=95.70 E-value=0.13 Score=40.77 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCC
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLP 137 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~ 137 (173)
.....++.++++.++.+++.||+|||..
T Consensus 246 ~~~~~~~~~~~g~~~~g~l~dr~~~~~~ 273 (390)
T PRK03545 246 LLLLFGGAGIIGSVLFSRLGNRHPSGFL 273 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3445677889999999999999998854
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=95.60 E-value=0.052 Score=43.84 Aligned_cols=49 Identities=14% Similarity=0.396 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH-HHHhhcccCChHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESARWL 52 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~-~~~~~~lPESP~wl 52 (173)
+....+|.+++..++-.+ .+||+.+.+.+++.++. ++..+++||+|++.
T Consensus 153 ~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~ 205 (434)
T PRK11663 153 NTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM 205 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc
Confidence 344556666665543322 38999999988776544 44455689999764
No 37
>PRK10091 MFS transport protein AraJ; Provisional
Probab=95.33 E-value=0.091 Score=41.61 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
......++..+++.++.+++.||+|+|....+.
T Consensus 239 ~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~ 271 (382)
T PRK10091 239 FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVT 271 (382)
T ss_pred HHHHHHHHHHHHHhHHHheeccccCchhHHHHH
Confidence 344567778899999999999999988766543
No 38
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.22 E-value=0.082 Score=43.38 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccCCC
Q psy2968 108 KLPLIILGMIGILGGALCLFLPETLGQD 135 (173)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~l~d~~grr 135 (173)
.....+.++.+.++.++++++.||++||
T Consensus 291 ~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 291 GAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 3445567788899999999999999876
No 39
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=95.16 E-value=0.13 Score=40.28 Aligned_cols=31 Identities=3% Similarity=-0.168 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.....++..+++.++.+++.||+|||....+
T Consensus 235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3445566778888999999999999865443
No 40
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=95.03 E-value=0.24 Score=38.16 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.....++..+++.++.+++.||+|||.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (365)
T TIGR00900 252 VLAAFGLGALLGALLLGLLGRYFKRMALMTG 282 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 3445667778888899999999999876654
No 41
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=94.94 E-value=0.089 Score=42.52 Aligned_cols=30 Identities=3% Similarity=0.223 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHH-HHHhhcccCChHH
Q psy2968 22 ANWQYLCVITSLPLLVA-VITPWIVPESARW 51 (173)
Q Consensus 22 ~~WR~~~~i~~~~~~~~-~~~~~~lPESP~w 51 (173)
.+||..+++.+++.++. ++..+++||+|+.
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 212 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQS 212 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence 38999999988876664 4556678999875
No 42
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=94.86 E-value=0.15 Score=39.66 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
....++..+++.++++++.||+|||.....
T Consensus 267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 296 (366)
T TIGR00886 267 ASLGGLLGSLARPLGGAISDRLGGARKLLM 296 (366)
T ss_pred HHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence 344566778888899999999999754443
No 43
>PRK12382 putative transporter; Provisional
Probab=94.61 E-value=0.45 Score=37.63 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
....++..+++.++.+.+.||+|+|......
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~ 285 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVS 285 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHH
Confidence 3445666777888899999999998666543
No 44
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=94.57 E-value=0.35 Score=37.78 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.....++..+++.++.+++.||+|+|....+
T Consensus 247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3445667788899999999999998865443
No 45
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=94.35 E-value=0.04 Score=42.79 Aligned_cols=48 Identities=13% Similarity=0.419 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHH-HHHHhc---chhHHHHHHHHHHHHH-HHHHhhcccCChHH
Q psy2968 4 AIFFTLAASLLP-WIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESARW 51 (173)
Q Consensus 4 ~~~~~~G~~~~~-~l~~~~---~~WR~~~~i~~~~~~~-~~~~~~~lPESP~w 51 (173)
+.+..+|.++++ +++... .+||+.+.+.++..++ .++..+++||+|+.
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (379)
T TIGR00881 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQS 177 (379)
T ss_pred hccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccc
Confidence 344556666665 233222 3899999887766555 44555668888753
No 46
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=94.31 E-value=0.66 Score=36.92 Aligned_cols=28 Identities=11% Similarity=-0.218 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
...+..+++.++.+.+.||+|+|....+
T Consensus 259 ~~~~~~~~g~~~~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 259 PVFGALIAGNLTLARLTSRRPLRSLIRM 286 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3445677788888999999998765544
No 47
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=94.31 E-value=0.19 Score=40.79 Aligned_cols=30 Identities=3% Similarity=0.254 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHHH-HHHhhcccCChHH
Q psy2968 22 ANWQYLCVITSLPLLVA-VITPWIVPESARW 51 (173)
Q Consensus 22 ~~WR~~~~i~~~~~~~~-~~~~~~lPESP~w 51 (173)
.+||+.+++.+++.++. ++..+++||+|+.
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~ 214 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQS 214 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence 49999999988776654 5556678999875
No 48
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=94.21 E-value=0.52 Score=37.33 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.....++..+++.++.+++.||+|+|.....
T Consensus 254 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 284 (399)
T PRK05122 254 ALTLFGVAFVGARLLFGNLINRLGGLRVAIV 284 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3445667778888999999999998865544
No 49
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=94.21 E-value=0.34 Score=39.34 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.....++..+++.++++++.||+|||....+.
T Consensus 296 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g 327 (485)
T TIGR00711 296 HILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG 327 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 34445667888899999999999999766554
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=94.14 E-value=0.27 Score=38.92 Aligned_cols=32 Identities=3% Similarity=-0.122 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.....++..+++.++.+++.||+|||....+.
T Consensus 244 ~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~ 275 (392)
T PRK10473 244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTS 275 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34456777888899999999999998765543
No 51
>PTZ00207 hypothetical protein; Provisional
Probab=93.63 E-value=0.22 Score=42.20 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHH-HHh-cchhHHHHHHHHHHHHH-HHHHhh--cccCChHHHHHcCChHHHHHHHHHHHH
Q psy2968 4 AIFFTLAASLLPWI-AYY-VANWQYLCVITSLPLLV-AVITPW--IVPESARWLVSQGRVDEAVVIMKRFEK 70 (173)
Q Consensus 4 ~~~~~~G~~~~~~l-~~~-~~~WR~~~~i~~~~~~~-~~~~~~--~lPESP~wl~~kg~~~ea~~~l~~i~~ 70 (173)
..+..+|..+...+ ... ..+|+..+++.++..++ .++... ..|++|+|...+++.+++++.++++++
T Consensus 161 ~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~ 232 (591)
T PTZ00207 161 KTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRK 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhh
Confidence 44555666432222 222 23788877766554443 333333 378889998888887888888777764
No 52
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=93.59 E-value=0.39 Score=41.14 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcccccCCCC
Q psy2968 117 IGILGGALCLFLPETLGQDL 136 (173)
Q Consensus 117 ~~~~~~~~~~~l~d~~grr~ 136 (173)
..+++.++++++.||++.+.
T Consensus 379 ~~~vG~~l~G~l~~r~~~~~ 398 (633)
T TIGR00805 379 AAGLGYLIGGFIMKKFKLNV 398 (633)
T ss_pred HHHHHHhhhhheeeeecccH
Confidence 34678889999999999764
No 53
>PRK11043 putative transporter; Provisional
Probab=93.55 E-value=0.77 Score=36.43 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESA 49 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP 49 (173)
+||+.+.+..+..++..+..++++|++
T Consensus 158 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 158 GWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 899999988887777666666666665
No 54
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.45 E-value=0.48 Score=37.53 Aligned_cols=42 Identities=2% Similarity=-0.184 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccC
Q psy2968 6 FFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPE 47 (173)
Q Consensus 6 ~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPE 47 (173)
+..+|.+++....... .+||..+++.++..++..+..++++|
T Consensus 141 g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666666443222 28999999988776665544444443
No 55
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=93.40 E-value=0.88 Score=41.30 Aligned_cols=32 Identities=16% Similarity=-0.178 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.....++..+++.++++++.||++++....+.
T Consensus 274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~ 305 (1146)
T PRK08633 274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLG 305 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEccchhHH
Confidence 34456667788899999999999887655443
No 56
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=93.40 E-value=0.087 Score=42.98 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.......+..+++.++++++.||+|||....+
T Consensus 298 ~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~ 329 (467)
T PRK09556 298 NTFTLFEIGALVGSLLWGWLSDLANGRRALVA 329 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 33445667789999999999999998865543
No 57
>PRK10489 enterobactin exporter EntS; Provisional
Probab=93.18 E-value=1.3 Score=35.46 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy2968 5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARW 51 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~w 51 (173)
....+|..+++.++-.+ .+||+.+.+..+..++..+..+.+||+|+.
T Consensus 153 ~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (417)
T PRK10489 153 LTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPP 202 (417)
T ss_pred HHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 34455555555554332 279999998888777767777778887643
No 58
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=93.14 E-value=0.093 Score=40.35 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHH-hhcccCChHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPESARW 51 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~-~~~lPESP~w 51 (173)
.+....+|.++++.++..+. +||+.+++.++..++..++ ..++++.|.-
T Consensus 126 ~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 126 LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence 35567788888877766654 7999999998888776553 3455555533
No 59
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=93.14 E-value=0.8 Score=36.54 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-HhhcccCChH
Q psy2968 5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPESAR 50 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~-~~~~lPESP~ 50 (173)
..+++|.+++..++..+ .+||+.+++.++..++..+ ....+||+|+
T Consensus 151 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 151 GAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 33455665555554443 2899999988766655433 3445899874
No 60
>KOG2532|consensus
Probab=93.01 E-value=0.5 Score=38.97 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh-hcccCChH
Q psy2968 9 LAASLLPWIAYYVANWQYLCVITSLPLLVAVITP-WIVPESAR 50 (173)
Q Consensus 9 ~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~~-~~lPESP~ 50 (173)
++..+++.+.....||+.+|++.++.+++..++. ++.-|+|.
T Consensus 179 ~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 179 ITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3333344343332399999999998887765554 45677874
No 61
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=92.26 E-value=0.71 Score=36.97 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
+..+..+++.++.+++.||+|+|....+.
T Consensus 265 ~~~i~~ii~~~~~~~l~~r~g~~~~~~~~ 293 (437)
T TIGR00792 265 IAIVAGLIGVLLFPRLVKKFGRKILFAGG 293 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 44667788888899999999998665544
No 62
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=92.00 E-value=1.4 Score=34.89 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 114 LGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.++..+++....+++.||+|||.......
T Consensus 267 ~~l~~~~~~~~~g~l~dr~g~~~~~~~~~ 295 (408)
T PRK09874 267 PGVAALLSAPRLGKLGDRIGPEKILITAL 295 (408)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 34556677777889999999987765543
No 63
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=91.54 E-value=0.67 Score=37.28 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHH-hhcccCChH
Q psy2968 7 FTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT-PWIVPESAR 50 (173)
Q Consensus 7 ~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~-~~~lPESP~ 50 (173)
..+|..++..++..+ .+||+.+++.++..++..+. .+.+||+++
T Consensus 149 ~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 149 VLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 444555555554333 28999999988877765544 456899864
No 64
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=91.48 E-value=1.1 Score=35.55 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 114 LGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.++...++....+.+.||+|||....+..
T Consensus 263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~ 291 (396)
T TIGR00882 263 GELLNALIMFCAPLIINRIGAKNALLIAG 291 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 44556667788889999999998776644
No 65
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=89.86 E-value=0.67 Score=35.32 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHhhccc
Q psy2968 4 AIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVP 46 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~~~~lP 46 (173)
+....+|..+++.++..+. +||+.+.+.+++.++..+...++|
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655442 699999998888777666665555
No 66
>PRK09528 lacY galactoside permease; Reviewed
Probab=89.80 E-value=5.2 Score=32.02 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
+.++...++.++++++.||+|||.....
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 297 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLL 297 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 3455667888899999999999977544
No 67
>PRK10133 L-fucose transporter; Provisional
Probab=89.75 E-value=1.9 Score=35.07 Aligned_cols=33 Identities=9% Similarity=-0.141 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.......+..+++.+++.++.||+|+|......
T Consensus 299 ~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~ 331 (438)
T PRK10133 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 445667778899999999999999998654443
No 68
>PRK03699 putative transporter; Provisional
Probab=88.18 E-value=3.3 Score=32.87 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
...+.+...++.++.+++.||++||......
T Consensus 247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~ 277 (394)
T PRK03699 247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVL 277 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 3455667888999999999999998766543
No 69
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=87.76 E-value=1.3 Score=36.44 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESAR 50 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~-~~~~~~lPESP~ 50 (173)
...+.+|..+++.++-.+ .+||+.+++.....++. ++..+++||+|.
T Consensus 137 ~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 137 AAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344556666666665444 28999999876555543 344566888763
No 70
>PRK15011 sugar efflux transporter B; Provisional
Probab=86.91 E-value=1.4 Score=34.98 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHH-HHhhcccCCh
Q psy2968 6 FFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAV-ITPWIVPESA 49 (173)
Q Consensus 6 ~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~-~~~~~lPESP 49 (173)
..++|.+++..++..+ .+||..+++.++..++.. ...+++||+|
T Consensus 151 ~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 151 QVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 4556666666665444 299999998877665544 4455689886
No 71
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=86.24 E-value=5.8 Score=31.94 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 116 MIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 116 ~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
....+|-++++++.||+++|....+.
T Consensus 280 ~~~~vGR~~~~~l~~r~~~~~~l~i~ 305 (410)
T TIGR00885 280 VIFFISRFIGTWLISYLAAHKVLMAY 305 (410)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 55678899999999999988655443
No 72
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=86.04 E-value=2.1 Score=34.03 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
......++.++++.++.+++.||+|||....+.
T Consensus 244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~ 276 (393)
T PRK09705 244 SLLALMTLGQAAGALLMPAMARHQDRRKLLMLA 276 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 445577888899999999999999998665543
No 73
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=85.40 E-value=3 Score=32.94 Aligned_cols=31 Identities=13% Similarity=-0.184 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
...+..+++..+...+.||+|.|....+...
T Consensus 248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~ 278 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAI 278 (382)
T ss_pred HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence 3445556667777788899998876655443
No 74
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=85.22 E-value=9.2 Score=35.02 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESA 49 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP 49 (173)
+...++|.++++.++-.+ .+|++.+.+..+..++.++..+++||++
T Consensus 150 ~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 150 EAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 444555555555554333 3899999666666666666666777764
No 75
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=85.13 E-value=17 Score=28.87 Aligned_cols=30 Identities=7% Similarity=-0.179 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQT 139 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~ 139 (173)
.....++..++++++...+.|+.+++....
T Consensus 246 ~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~ 275 (393)
T PRK11195 246 LQAVVAIGIAVGAGAAARLVTLETVLRVLP 275 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 344566777888888888888888775443
No 76
>KOG1330|consensus
Probab=84.47 E-value=0.062 Score=43.86 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy2968 5 IFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAV-ITPWIVPESAR 50 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~-~~~~~lPESP~ 50 (173)
+..++|..++++.+..+ ..|||-++..++.+++.. +.+++.+|.+|
T Consensus 164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 33444444444443333 259999999988877755 44566888753
No 77
>KOG3626|consensus
Probab=82.38 E-value=5 Score=35.09 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPES 48 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPES 48 (173)
.|+.=|++++...++..+.+++.|..
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 48888888888887777777766554
No 78
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=82.06 E-value=4.3 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy2968 23 NWQYLCVITSLPLLVA-VITPWIVPESAR 50 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~-~~~~~~lPESP~ 50 (173)
+||+.+.+..+..++. ++..+++||+|+
T Consensus 160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 160 GWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 8999999887765543 444567899874
No 79
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=82.05 E-value=13 Score=29.95 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
....+..+..+++.++.+.+.||+|||....+...
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~ 289 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV 289 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 33344555677778888999999999987766543
No 80
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=81.93 E-value=4.7 Score=25.95 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-HhhcccCC
Q psy2968 5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPES 48 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~-~~~~lPES 48 (173)
....+|..+++.++... .+|++.+.+..+..++..+ ..++.||+
T Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 94 AGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34445555554443333 2799988887776665444 34456764
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=81.12 E-value=3 Score=32.94 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy2968 5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPES 48 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPES 48 (173)
...++|..+++.++-.+ .+||..+++.++..++..+...+.||.
T Consensus 135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 34456666666665443 289999988776555444444456765
No 82
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=80.01 E-value=27 Score=27.77 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCc
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQ 138 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~ 138 (173)
...++.+.++.++.+++.||+|||...
T Consensus 264 ~~~~~~~~ig~~~~g~l~dr~~~~~~~ 290 (402)
T TIGR00897 264 GTFFFTNIVFNVIFGIVGDKLGWMNTV 290 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 355677899999999999999988654
No 83
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=79.07 E-value=3.8 Score=34.99 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHH--HhhcccCC
Q psy2968 23 NWQYLCVITSLPLLVAVI--TPWIVPES 48 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~--~~~~lPES 48 (173)
+|||.+++..+...+.++ .+++-|.+
T Consensus 194 ~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 194 GWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999998876555433 34455644
No 84
>PF13347 MFS_2: MFS/sugar transport protein
Probab=78.86 E-value=12 Score=30.02 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
....+..+++.++..++.+|+|+|........
T Consensus 267 ~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~ 298 (428)
T PF13347_consen 267 LIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL 298 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence 35566778888899999999999987666544
No 85
>KOG0055|consensus
Probab=74.36 E-value=38 Score=31.62 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q psy2968 6 FFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVIT 41 (173)
Q Consensus 6 ~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~ 41 (173)
..++..++.+++-.+..+||..+...+..+++.+..
T Consensus 790 v~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~ 825 (1228)
T KOG0055|consen 790 VQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSG 825 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333349999777665544444333
No 86
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=73.89 E-value=33 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcccccCCC
Q psy2968 106 NPKLPLIILGMIGILGGALCLFLPETLGQD 135 (173)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~l~d~~grr 135 (173)
+.....+...+.+++|+++.+++.||+|-|
T Consensus 318 ~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 318 QLIVFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344556677889999999999999999988
No 87
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=72.33 E-value=15 Score=20.98 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy2968 9 LAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPESA 49 (173)
Q Consensus 9 ~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~~~~lPESP 49 (173)
+|.+++++.+.... +......++.+.+++...+...+|..+
T Consensus 13 l~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 13 LGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44444444443332 677777777788777776666676654
No 88
>KOG0255|consensus
Probab=72.04 E-value=1.9 Score=35.72 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHhhhh
Q psy2968 107 PKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENF 146 (173)
Q Consensus 107 ~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~~~~ 146 (173)
..+...++.+...+|.++.+.+.|++|||+...++.....
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~ 159 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFI 159 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHH
Confidence 3345566777889999999999999999988877655433
No 89
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=71.80 E-value=1.5 Score=35.37 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHhh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGE 144 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~~ 144 (173)
.......+..++|+++++++.||+|||+...+...-
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccc
Confidence 444556677889999999999999999887776543
No 90
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=69.24 E-value=12 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy2968 9 LAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESA 49 (173)
Q Consensus 9 ~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP 49 (173)
+|.+++..++-.. .+||..+++.++..++..+..+++||.+
T Consensus 169 ~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 169 TGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 5776666554433 2799999988777666666667789963
No 91
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=69.07 E-value=10 Score=31.38 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVA---NWQYLCVITSL 33 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~ 33 (173)
..+.+++|..+++.++-.+. +||+.|++..+
T Consensus 148 ~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 148 FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 34556666666555443332 89999998654
No 92
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=67.01 E-value=13 Score=28.66 Aligned_cols=32 Identities=6% Similarity=-0.150 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
..........++.+++.++.||+|+|....+.
T Consensus 183 ~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~ 214 (310)
T TIGR01272 183 FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFN 214 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 34455667788999999999999876554443
No 93
>TIGR00898 2A0119 cation transport protein.
Probab=65.92 E-value=4.6 Score=33.09 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+..+++.++.+++.||+|||+...+...
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~ 165 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTL 165 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHH
Confidence 33445667788899999999999999987766543
No 94
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=65.67 E-value=23 Score=21.50 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLV 37 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~ 37 (173)
.+....++.+++.+++|...+-+..+++.++-.++
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~ 47 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSFSYTFYIYGAGVVL 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888899888777777765554443
No 95
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=64.98 E-value=60 Score=26.94 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+..++..++..+++++.||+|++....+.-
T Consensus 294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~ 323 (462)
T PRK15034 294 FGPFIGAIARSVGGAISDKFGGVRVTLINF 323 (462)
T ss_pred HHHHHHHHHHHhhHHHHHhcCchHHHHHHH
Confidence 345667777889999999999987665544
No 96
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=64.39 E-value=6.4 Score=31.11 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......+...++.++.+.+.||+|||.......
T Consensus 56 ~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (399)
T PRK05122 56 VISLQYLATLLSRPHAGRYADTLGPKKAVVFGL 88 (399)
T ss_pred HHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence 334455667788889999999999998877754
No 97
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=63.12 E-value=41 Score=22.44 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHhcchhHH
Q psy2968 5 IFFTLAASLLPWIAYYVANWQY 26 (173)
Q Consensus 5 ~~~~~G~~~~~~l~~~~~~WR~ 26 (173)
++..+|.+++..+++.+ +|-.
T Consensus 32 ~~~~~g~~~gl~la~~~-g~~a 52 (121)
T PF11990_consen 32 VGFVAGLVVGLPLALLT-GWWA 52 (121)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH
Confidence 34455555555555554 5543
No 98
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=62.83 E-value=4.5 Score=32.79 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+..+++.++.+++.||+|||....+...
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~ 93 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34456677788999999999999999987666543
No 99
>TIGR00893 2A0114 d-galactonate transporter.
Probab=61.69 E-value=8.8 Score=29.58 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+...++.++.+++.||+|||....+..
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 66 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFI 66 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHH
Confidence 4445667778888999999999999998876654
No 100
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=61.47 E-value=7.7 Score=29.86 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......+...++.++.+.+.||+|||....+..
T Consensus 43 ~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~ 75 (377)
T TIGR00890 43 WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGG 75 (377)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhH
Confidence 344566677888888999999999998776644
No 101
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=60.65 E-value=4.6 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 116 MIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 116 ~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+...++.++++++.||+|||....+..
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~ 100 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKKSMLISV 100 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344588999999999999998665543
No 102
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=60.45 E-value=21 Score=29.69 Aligned_cols=34 Identities=6% Similarity=0.227 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLV 37 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~ 37 (173)
..+.++|..+++.++-.+ .+||+.|++..+..++
T Consensus 156 ~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 156 YMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 455667777776664443 2899999988754333
No 103
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=59.99 E-value=6.9 Score=30.14 Aligned_cols=35 Identities=6% Similarity=-0.154 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+..+++.++.+++.||+|||....+...
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 68 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLI 68 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHH
Confidence 34445667778888999999999999987776653
No 104
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=59.90 E-value=10 Score=30.19 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
...+.+...+..++.+.+.||+|||....+...
T Consensus 44 ~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~ 76 (393)
T PRK11195 44 QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG 76 (393)
T ss_pred HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH
Confidence 345556677788899999999999988877654
No 105
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=59.76 E-value=6.1 Score=32.58 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.......+..+++.++.+++.||+|||....+.
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 344556677889999999999999999876554
No 106
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=59.68 E-value=6.8 Score=30.06 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+...++.++.+.+.||+|||....+..
T Consensus 38 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~ 71 (365)
T TIGR00900 38 LAALAGMLPYVVLSPIAGALADRYDRKKVMIGAD 71 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHH
Confidence 3344556677888889999999999998776654
No 107
>PRK12382 putative transporter; Provisional
Probab=59.42 E-value=6.6 Score=30.99 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+.+.||+|||+......
T Consensus 57 ~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (392)
T PRK12382 57 VGIQFLATVLTRGYAGRLADQYGAKRSALQGM 88 (392)
T ss_pred HHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence 34456667788889999999999998777643
No 108
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=59.10 E-value=11 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.......+...++.++.+.+.||+|||....+...
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~ 72 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLL 72 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHH
Confidence 34455667778889999999999999987666543
No 109
>PRK11462 putative transporter; Provisional
Probab=58.14 E-value=1e+02 Score=25.22 Aligned_cols=28 Identities=14% Similarity=-0.048 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQT 139 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~ 139 (173)
...++.++++.+++.++.||+|+|....
T Consensus 270 ~~~~i~~iig~~l~~~l~~r~gkk~~~~ 297 (460)
T PRK11462 270 TTYCVGNLIGSALAKPLTDWKCKVTIFW 297 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 3456677888889999999999886543
No 110
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=57.89 E-value=10 Score=30.02 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+...++.++.+++.||+|||+......
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 4445566777888999999999999998877754
No 111
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=57.67 E-value=69 Score=26.39 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=27.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 106 NPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
+..+.-+...+++++++++.+++.||+|-|....++
T Consensus 289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~ 324 (438)
T COG2270 289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIG 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHH
Confidence 344555667889999999999999999999555443
No 112
>KOG0252|consensus
Probab=57.60 E-value=9.4 Score=31.79 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.+....+..++|-++++|+.|++|||..-.....
T Consensus 89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~li 122 (538)
T KOG0252|consen 89 VNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELI 122 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHH
Confidence 3445566778899999999999999976555433
No 113
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=56.45 E-value=3.7 Score=34.62 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPES 48 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPES 48 (173)
.|..=+.+.++..++..+.+++.|..
T Consensus 227 AWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 227 AWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 38777777777776666665555443
No 114
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=56.20 E-value=7.7 Score=30.34 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......+...++.++.+++.||+|||....+..
T Consensus 52 ~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 52 LISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344556677888899999999999998766653
No 115
>PF12832 MFS_1_like: MFS_1 like family
Probab=55.94 E-value=13 Score=22.48 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
+.+.....+++..+.+.+.||.||+.....
T Consensus 41 ~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 41 SAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 334556788999999999999998765443
No 116
>KOG0569|consensus
Probab=55.51 E-value=11 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.+.+.+++|+++.+++.|++|||....+..
T Consensus 68 ~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~ 97 (485)
T KOG0569|consen 68 IFFIGGMIGSFSSGLLADRFGRKNALLLSN 97 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 566778999999999999999995555543
No 117
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=53.82 E-value=31 Score=17.88 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHHc
Q psy2968 50 RWLVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 50 ~wl~~kg~~~ea~~~l~~i~~~~ 72 (173)
+.+...|+.++|.+.+++.-+.+
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677899999999999998654
No 118
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=53.64 E-value=10 Score=29.32 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
......+...++.++.+.+.||+|||....+...
T Consensus 42 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 75 (366)
T TIGR00886 42 LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLL 75 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3445566777888888899999999877665443
No 119
>KOG1330|consensus
Probab=52.66 E-value=12 Score=31.05 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+....+.++..+++.+++++.||++|+.+..++..
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 44556777888999999999999999998887643
No 120
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=52.34 E-value=8.3 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.......+...++.++.+++.||+|||....+..
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 108 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA 108 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence 4445667778888999999999999998766544
No 121
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=52.27 E-value=15 Score=29.87 Aligned_cols=34 Identities=3% Similarity=-0.165 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+...++.++.+++.||+|||....+..
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~ 100 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 100 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH
Confidence 3445566777888999999999999998776654
No 122
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=52.21 E-value=10 Score=29.86 Aligned_cols=32 Identities=3% Similarity=-0.180 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+++.||+|||+...+..
T Consensus 44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~ 75 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA 75 (392)
T ss_pred HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH
Confidence 34455566777889999999999998766654
No 123
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=52.06 E-value=12 Score=30.08 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.+.+...++.++.+.+.||+|||+......
T Consensus 59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~ 88 (413)
T PRK15403 59 LYLAGGMALQWLLGPLSDRIGRRPVLITGA 88 (413)
T ss_pred HHHHHHHHHHHhhhHHHHHcCchHHHHHHH
Confidence 344566777888999999999998766554
No 124
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=51.94 E-value=63 Score=20.91 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHH
Q psy2968 7 FTLAASLLPWIAYYVA-----------NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIM 65 (173)
Q Consensus 7 ~~~G~~~~~~l~~~~~-----------~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l 65 (173)
..+|.++.+.++|..- .|--.+++.++..-+.-.+++-.----.|--++.++++|.+.+
T Consensus 9 Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~ 78 (104)
T PF11460_consen 9 IGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQL 78 (104)
T ss_pred ecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHHHHH
Confidence 4566666666666541 4666666655544443333333333335666667777776433
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=51.84 E-value=9.9 Score=33.48 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+..+++.++.+++.||+|||....+..
T Consensus 208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33456677899999999999999998777654
No 126
>KOG2615|consensus
Probab=51.52 E-value=9.1 Score=31.14 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.+++.+++.+...+-+.|++|||+.......
T Consensus 76 sF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~ 106 (451)
T KOG2615|consen 76 SFSILQFISSPLWGCLSDRYGRKPVLLACLI 106 (451)
T ss_pred HHHHHHHHhhhhhhhhhhhhCchHHHHHHHH
Confidence 4678899999999999999999988776543
No 127
>PRK12307 putative sialic acid transporter; Provisional
Probab=51.48 E-value=12 Score=29.86 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
......+...++.++.+++.||+|||....+...
T Consensus 58 ~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 58 LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 3345667778888999999999999987766543
No 128
>PRK10504 putative transporter; Provisional
Probab=51.07 E-value=35 Score=27.65 Aligned_cols=29 Identities=3% Similarity=-0.071 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 114 LGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
..+..+++..+.+.+.||+|||.......
T Consensus 306 ~~~~~~~~~~~~~~l~~r~g~~~~~~~~~ 334 (471)
T PRK10504 306 MVLGSMGMKRIVVQVVNRFGYRRVLVATT 334 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 34445555677888999999987766543
No 129
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=51.05 E-value=9.6 Score=30.17 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
......+...++.++.+++.||+|||.....
T Consensus 43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~ 73 (396)
T TIGR00882 43 VFSCISLFSILFQPLFGLISDKLGLKKHLLW 73 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3445666777777888888888888766543
No 130
>PRK10429 melibiose:sodium symporter; Provisional
Probab=50.66 E-value=85 Score=25.71 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
+.++..+++.++..++.||+|+|....+.
T Consensus 274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~ 302 (473)
T PRK10429 274 YAGAANLVTLILFPRLVKSLSRRILWAGA 302 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 34466778888889999999999776543
No 131
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=50.11 E-value=45 Score=22.16 Aligned_cols=31 Identities=3% Similarity=0.109 Sum_probs=16.0
Q ss_pred HHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 39 VITPWIVPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 39 ~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
+++.+.+|+-|.-.......+.+.+.++.+.
T Consensus 57 i~l~~~lp~~P~~~~~~~~~~s~~~~l~~~~ 87 (118)
T PRK10697 57 IILSFALDPMPDNMAFGEQQPSSSELLDEVD 87 (118)
T ss_pred HHHHHhccCCcccccccccCCCHHHHHHHHH
Confidence 4445568888854322222344555555554
No 132
>PRK10054 putative transporter; Provisional
Probab=50.08 E-value=27 Score=27.82 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHH-HhhcccCC
Q psy2968 7 FTLAASLLPWIAYYV--ANWQYLCVITSLPLLVAVI-TPWIVPES 48 (173)
Q Consensus 7 ~~~G~~~~~~l~~~~--~~WR~~~~i~~~~~~~~~~-~~~~lPES 48 (173)
.++|.++++.++..+ .+||..+.+.++..++..+ ..+++||.
T Consensus 141 ~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 141 LNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555444443332 3899999988776665543 34446665
No 133
>PRK10054 putative transporter; Provisional
Probab=49.90 E-value=15 Score=29.27 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+.+.||+|||....+..
T Consensus 49 ~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~ 80 (395)
T PRK10054 49 MTIALTIGVVFSLGFGILADKFDKKRYMLLAI 80 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence 33445567777888999999999997666544
No 134
>KOG2615|consensus
Probab=49.54 E-value=14 Score=30.15 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHhc---c-hhHHH-HHHHHHHHHH-HHHHhhcccCC
Q psy2968 3 IAIFFTLAASLLPWIAYYV---A-NWQYL-CVITSLPLLV-AVITPWIVPES 48 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~---~-~WR~~-~~i~~~~~~~-~~~~~~~lPES 48 (173)
.++++.+|-++++.++.+. . .|-.+ -++..+.+.. ..+..+++||+
T Consensus 165 ~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 165 FGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred hhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3444555555555555522 1 12222 1222233333 45567789999
No 135
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=49.21 E-value=13 Score=29.40 Aligned_cols=32 Identities=13% Similarity=-0.058 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+.+.||+|||+...+..
T Consensus 54 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 85 (406)
T PRK15402 54 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34556667788888999999999998766654
No 136
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=48.75 E-value=12 Score=29.51 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+.+.||+|||....+..
T Consensus 49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~ 80 (394)
T PRK11652 49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM 80 (394)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence 34455667778888899999999998765543
No 137
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=48.42 E-value=33 Score=19.77 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHH----HHHHHHhhcccCCh
Q psy2968 23 NWQYLCVITSLPL----LVAVITPWIVPESA 49 (173)
Q Consensus 23 ~WR~~~~i~~~~~----~~~~~~~~~lPESP 49 (173)
-+|..+.+..+.+ ++.+++...+|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 4777777665532 22344445688876
No 138
>PRK10489 enterobactin exporter EntS; Provisional
Probab=48.39 E-value=17 Score=28.99 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.......+..+++.++.+.+.||+|||....+.
T Consensus 56 ~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~ 88 (417)
T PRK10489 56 LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLA 88 (417)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEeh
Confidence 334455667788889999999999999877664
No 139
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=48.23 E-value=47 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy2968 23 NWQYLCVITSLPLLVAVIT 41 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~ 41 (173)
+||+.+.+.++..++..+.
T Consensus 171 gwr~~f~~~~~~~~~~~v~ 189 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVC 189 (455)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 8999999988776654433
No 140
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=48.07 E-value=62 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
......+...+++.++...+.+++|+|....+...
T Consensus 276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~ 310 (467)
T COG2211 276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL 310 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence 44455566667778899999999999988777654
No 141
>PF13041 PPR_2: PPR repeat family
Probab=47.81 E-value=41 Score=17.84 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.2
Q ss_pred HHHHcCChHHHHHHHHHHHHHc
Q psy2968 51 WLVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 51 wl~~kg~~~ea~~~l~~i~~~~ 72 (173)
.+.++|+.++|.+.++++.+.+
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcC
Confidence 4667899999999999998643
No 142
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=47.79 E-value=13 Score=29.51 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......++...++.++.+.+.||+|||.......
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~ 85 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGL 85 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3445667778888999999999999997766544
No 143
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=47.45 E-value=16 Score=29.14 Aligned_cols=32 Identities=3% Similarity=0.007 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
....+...++.++.+.+.||+|||........
T Consensus 62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~ 93 (394)
T PRK10213 62 TVTAFVAMFASLFITQTIQATDRRYVVILFAV 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 34566677788888999999999977666544
No 144
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=47.08 E-value=49 Score=27.26 Aligned_cols=34 Identities=6% Similarity=0.186 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLV 37 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~ 37 (173)
....++|.+++..++-.+ .+||+.+.+.++..++
T Consensus 147 ~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~ 183 (475)
T TIGR00924 147 YMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVI 183 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445667777776664443 2799999987754433
No 145
>PF12854 PPR_1: PPR repeat
Probab=46.94 E-value=21 Score=17.57 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=13.9
Q ss_pred HHHcCChHHHHHHHHHH
Q psy2968 52 LVSQGRVDEAVVIMKRF 68 (173)
Q Consensus 52 l~~kg~~~ea~~~l~~i 68 (173)
+.+.|+.++|.+.++++
T Consensus 17 ~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 17 YCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 56779999999988765
No 146
>PRK09952 shikimate transporter; Provisional
Probab=46.71 E-value=7.4 Score=31.51 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 116 MIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 116 ~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+...++.++.+++.||+|||....+..
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~ 101 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTV 101 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence 345677888999999999998776654
No 147
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=46.32 E-value=44 Score=26.65 Aligned_cols=41 Identities=17% Similarity=0.506 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHhhcccCC
Q psy2968 6 FFTLAASLLPWIAYYVANWQYLCVITSLPLLVAV-ITPWIVPES 48 (173)
Q Consensus 6 ~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~-~~~~~lPES 48 (173)
+..+|..++..+. ..+||+.+++.++..++.. +..+++||.
T Consensus 147 g~~ig~~l~g~l~--~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 147 GAVIGALLGSWLL--QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3344444444443 2389999998877655543 334556763
No 148
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=45.96 E-value=91 Score=23.24 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHH-HHhhcccCChHHHHHcCChHHHHHHHHHHHH
Q psy2968 12 SLLPWIAYYVANWQYLCVITSLPLLVAV-ITPWIVPESARWLVSQGRVDEAVVIMKRFEK 70 (173)
Q Consensus 12 ~~~~~l~~~~~~WR~~~~i~~~~~~~~~-~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~ 70 (173)
.+..++++.+.+|.+...++...+++.. +.+-.--|..-|-...|+.-.|..+|+.+++
T Consensus 40 ~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 40 AVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 3344445556555444444444444322 2222345666777777887777888887765
No 149
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=45.85 E-value=12 Score=30.26 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+...++.++.+++.||+|||....+..
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWLAKRFGTRRLFLIST 74 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence 4455677788889999999999999998766554
No 150
>PF15050 SCIMP: SCIMP protein
Probab=45.56 E-value=29 Score=23.05 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=14.2
Q ss_pred hHHHHHcCChHHHHHHHHH
Q psy2968 49 ARWLVSQGRVDEAVVIMKR 67 (173)
Q Consensus 49 P~wl~~kg~~~ea~~~l~~ 67 (173)
-||+.++|+.-|..+.++.
T Consensus 31 cR~~lRqGkkweiakp~k~ 49 (133)
T PF15050_consen 31 CRWQLRQGKKWEIAKPLKQ 49 (133)
T ss_pred HHHHHHccccceeccchhh
Confidence 5899999997776665543
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.47 E-value=24 Score=16.12 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=14.4
Q ss_pred HHHcCChHHHHHHHHHHHH
Q psy2968 52 LVSQGRVDEAVVIMKRFEK 70 (173)
Q Consensus 52 l~~kg~~~ea~~~l~~i~~ 70 (173)
+...|+.++|.+.++++.+
T Consensus 10 ~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 10 YCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHccchHHHHHHHHHHHhH
Confidence 3456788889888888764
No 152
>PRK10091 MFS transport protein AraJ; Provisional
Probab=45.27 E-value=19 Score=28.37 Aligned_cols=33 Identities=3% Similarity=0.002 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......+...++.++.+++.||+|||+...+..
T Consensus 43 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 75 (382)
T PRK10091 43 MISYYALGVVVGAPIIALFSSRYSLKHILLFLV 75 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 344556777888999999999999997776654
No 153
>PRK11663 regulatory protein UhpC; Provisional
Probab=45.00 E-value=20 Score=28.87 Aligned_cols=32 Identities=0% Similarity=-0.163 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+++.||+|||....+..
T Consensus 64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~ 95 (434)
T PRK11663 64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGL 95 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence 34556667788889999999999997765554
No 154
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=44.63 E-value=16 Score=28.37 Aligned_cols=32 Identities=19% Similarity=-0.010 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+.+.||+|||.......
T Consensus 46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 77 (385)
T TIGR00710 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL 77 (385)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence 34455666778888888999999987665543
No 155
>KOG4112|consensus
Probab=44.62 E-value=81 Score=20.03 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHhcchhHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVANWQY 26 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~~WR~ 26 (173)
.|+...+|.+++.+.++....--+
T Consensus 28 ~q~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 28 QQLILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888887764333
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=44.32 E-value=36 Score=15.83 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.9
Q ss_pred HHHHcCChHHHHHHHHHHHHH
Q psy2968 51 WLVSQGRVDEAVVIMKRFEKI 71 (173)
Q Consensus 51 wl~~kg~~~ea~~~l~~i~~~ 71 (173)
.+.+.|+.++|.+.++++...
T Consensus 9 ~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 9 GLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHCCCHHHHHHHHHHHHHc
Confidence 356778899999999998753
No 157
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=44.24 E-value=36 Score=21.82 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcC
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQG 56 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg 56 (173)
-|++++++..+...++..+--+.||.|.-.++..
T Consensus 6 ~WKyllil~vl~~~~lyALPnlyge~pAvqIs~~ 39 (101)
T PF13721_consen 6 LWKYLLILVVLLLGALYALPNLYGEDPAVQISAS 39 (101)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCcEEEecC
Confidence 6999988776665555555667899997776553
No 158
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=44.17 E-value=11 Score=31.48 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccc-CCCCCcchHHh
Q psy2968 110 PLIILGMIGILGGALCLFLPETL-GQDLPQTLQDG 143 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~-grr~~~~i~~~ 143 (173)
....+.....++.++++++.||+ |||....++..
T Consensus 50 i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 50 LFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 34455566777888999999999 99976665443
No 159
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=44.06 E-value=8.6 Score=29.35 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+...++.++.+.+.||+|||....+...
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~ 70 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLL 70 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhh
Confidence 34445667788899999999999999986665543
No 160
>PRK11043 putative transporter; Provisional
Probab=43.46 E-value=18 Score=28.59 Aligned_cols=32 Identities=19% Similarity=-0.030 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+.+.||+|||.......
T Consensus 47 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 78 (401)
T PRK11043 47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL 78 (401)
T ss_pred HHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH
Confidence 33455666788888899999999987766543
No 161
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=43.45 E-value=60 Score=20.96 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHH-HHHHhhcccCChHHHHHcCChHHHHHHHH
Q psy2968 23 NWQYLCVITSLPLLV-AVITPWIVPESARWLVSQGRVDEAVVIMK 66 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~-~~~~~~~lPESP~wl~~kg~~~ea~~~l~ 66 (173)
+|..++.++...+++ ..+.+.+.|+..- ..-..+||..-++
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~i---~~WA~rEA~~rl~ 99 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTSI---QTWARREAYRRLE 99 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHh
Confidence 799999987766655 4555667898862 1112355555544
No 162
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=43.22 E-value=13 Score=28.70 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcccccCCCCCcchHH
Q psy2968 118 GILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 118 ~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
..++.++.+++.||+|||+...+..
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~~~ 72 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVITL 72 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHHHH
Confidence 3567888899999999997765543
No 163
>PRK09669 putative symporter YagG; Provisional
Probab=43.13 E-value=1.8e+02 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 115 GMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 115 ~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.+..+++.++..++.||+|+|....+.
T Consensus 274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~ 300 (444)
T PRK09669 274 MIAGLFGALLSERLLGKFDRVRAFKWT 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 345567777888999999998766544
No 164
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=43.11 E-value=18 Score=28.18 Aligned_cols=33 Identities=9% Similarity=-0.048 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......+...++.++.+.+.||+|||.......
T Consensus 31 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 63 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPMADSFGRKPVILGGT 63 (377)
T ss_pred HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHH
Confidence 334556667788899999999999998776654
No 165
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=43.04 E-value=18 Score=29.72 Aligned_cols=30 Identities=7% Similarity=-0.175 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
...+...++.++.+++.||+|||.......
T Consensus 79 ~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 79 ASVSGSIFSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 445556777888999999999997666543
No 166
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=42.65 E-value=24 Score=28.74 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.+.+...++.++.+++.||+|||....+
T Consensus 72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 72 GFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 4555667788899999999999987543
No 167
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=42.61 E-value=23 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCc
Q psy2968 114 LGMIGILGGALCLFLPETLGQDLPQ 138 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~~grr~~~ 138 (173)
..+...+...+.+.+.||+|||...
T Consensus 42 ~~~~~~~~~~~~g~l~Dr~g~r~~~ 66 (375)
T TIGR00899 42 SAIVGIAVSQLLATRSDYQGDRKGL 66 (375)
T ss_pred HHHHHHHHHHHHHHHHhccCCchHH
Confidence 3445566666777778888876543
No 168
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=42.46 E-value=19 Score=28.33 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
....+...++.++.+.+.||+|||.......
T Consensus 61 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 91 (408)
T PRK09874 61 SITFLFSAIASPFWGGLADRKGRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence 3455566777888888999999987666543
No 169
>PRK15075 citrate-proton symporter; Provisional
Probab=42.39 E-value=9.2 Score=30.83 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=20.3
Q ss_pred HHHHHHHHhcccccCCCCCcchHHh
Q psy2968 119 ILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 119 ~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.++.++.+++.||+|||........
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHH
Confidence 4678889999999999988766543
No 170
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=42.33 E-value=18 Score=29.22 Aligned_cols=33 Identities=3% Similarity=-0.092 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
.......+...++.++.+++.||+|||......
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~ 97 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAG 97 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHH
Confidence 444456677788899999999999999876654
No 171
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=41.90 E-value=14 Score=30.07 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVI 40 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~ 40 (173)
+....+|.++++.++-.+ .+|+..+.+.++..++..+
T Consensus 375 ~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 375 TIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 344556666555553322 2699999888876555433
No 172
>PRK10133 L-fucose transporter; Provisional
Probab=41.15 E-value=16 Score=29.70 Aligned_cols=34 Identities=9% Similarity=-0.247 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+....+.+...++.++.+.+.||+|||+......
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~ 98 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4445667778888999999999999997766654
No 173
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=41.13 E-value=77 Score=25.51 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHH-HHhhcccCC
Q psy2968 23 NWQYLCVITSLPLLVAV-ITPWIVPES 48 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~-~~~~~lPES 48 (173)
+|+..+.+.++..++.. +..+++|||
T Consensus 379 ~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 59999988877766544 445567887
No 174
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=40.97 E-value=19 Score=27.93 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+...++.++.+++.||+|||+...+..
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 72 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGL 72 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHH
Confidence 3444566677888899999999999997766644
No 175
>KOG2513|consensus
Probab=40.91 E-value=2.2e+02 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=16.6
Q ss_pred HHhhcccCChHHHHHc-CC-hHHHHHHHHH
Q psy2968 40 ITPWIVPESARWLVSQ-GR-VDEAVVIMKR 67 (173)
Q Consensus 40 ~~~~~lPESP~wl~~k-g~-~~ea~~~l~~ 67 (173)
++.+.+||+|+|.... .| .-++++..++
T Consensus 588 lis~vipe~p~wva~~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 588 LISSVIPESPRWVAAGIAKAEFQAREAFKK 617 (647)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhhhH
Confidence 3344589999998532 12 3345555554
No 176
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=40.86 E-value=23 Score=28.07 Aligned_cols=28 Identities=7% Similarity=-0.276 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQT 139 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~ 139 (173)
..+.+...++.+..+++.||+|||....
T Consensus 33 s~~~~g~~i~~~~~G~l~Dr~grr~~~~ 60 (368)
T TIGR00903 33 ITYPAAFLALTIPSGLLLDRAFKRWFLF 60 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3455566788888999999999997543
No 177
>PRK09528 lacY galactoside permease; Reviewed
Probab=40.30 E-value=57 Score=26.01 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHH-Hhc--chhHHHHHHHHHHHHHH-HHHhhccc
Q psy2968 6 FFTLAASLLPWIA-YYV--ANWQYLCVITSLPLLVA-VITPWIVP 46 (173)
Q Consensus 6 ~~~~G~~~~~~l~-~~~--~~WR~~~~i~~~~~~~~-~~~~~~lP 46 (173)
...+|.++++.+. +.. .|||..+.+.++..++. .+..+.++
T Consensus 360 ~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 360 AKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555544443 222 28999999876655443 33343443
No 178
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=40.13 E-value=2.1e+02 Score=23.55 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHH-hhcccCChHH
Q psy2968 9 LAASLLPWIAYYVA--NWQYLCVITSLPLLVAVIT-PWIVPESARW 51 (173)
Q Consensus 9 ~G~~~~~~l~~~~~--~WR~~~~i~~~~~~~~~~~-~~~lPESP~w 51 (173)
+-+++++.+.-... .||....+..++.++..+. .+++-+.|..
T Consensus 154 v~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~ 199 (417)
T COG2223 154 VAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH 199 (417)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 33344444444442 2999999888887775444 4557777755
No 179
>KOG0254|consensus
Probab=40.07 E-value=17 Score=30.13 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+.+.++.++.+.+.|++|||....+...
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~ 127 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVV 127 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556777889999999999999999976666543
No 180
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=39.91 E-value=85 Score=18.91 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcc------hhHHHHHHHHHHHHH
Q psy2968 9 LAASLLPWIAYYVA------NWQYLCVITSLPLLV 37 (173)
Q Consensus 9 ~G~~~~~~l~~~~~------~WR~~~~i~~~~~~~ 37 (173)
+|.++...+++.++ .||.+..--.+=-++
T Consensus 1 lGi~v~l~ia~l~S~~rk~I~wr~V~~gl~lQ~~l 35 (75)
T PF01773_consen 1 LGILVLLAIAWLFSENRKAIKWRTVIWGLGLQFVL 35 (75)
T ss_dssp HHHHHHHHHHHHH-S-GGG--HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCCcCChHHHHHHHHHHHHH
Confidence 46666667777774 799876654444333
No 181
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=39.60 E-value=20 Score=28.47 Aligned_cols=31 Identities=3% Similarity=-0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
...+...++.++.+.+.||+|||........
T Consensus 52 ~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~ 82 (393)
T PRK09705 52 LPVVTMGGLALAGSWLHQHVSERRSVAISLL 82 (393)
T ss_pred HHHHHHHHHhhhhHHHHHHhCchHHHHHHHH
Confidence 3445567778888999999999987776544
No 182
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=39.05 E-value=1.4e+02 Score=21.28 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=12.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q psy2968 22 ANWQYLCVITSLPLLVAVITPW 43 (173)
Q Consensus 22 ~~WR~~~~i~~~~~~~~~~~~~ 43 (173)
.+|+..........+..++..+
T Consensus 139 ~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 139 ISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhHhhhhh
Confidence 4888877766444444343333
No 183
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=39.02 E-value=61 Score=25.03 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHhccccc-CCCCCc
Q psy2968 109 LPLIILGMIGILGGALCLFLPETL-GQDLPQ 138 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~-grr~~~ 138 (173)
......++..+++.++.+++.||+ +||...
T Consensus 236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~ 266 (355)
T TIGR00896 236 SLLALMQLAQAASALLIPALARRVKDQRGIV 266 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHH
Confidence 444567788899999999999999 455443
No 184
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=38.85 E-value=17 Score=29.16 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
....+...++.+..+++.||+|||.......
T Consensus 50 s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 80 (412)
T TIGR02332 50 TLFYAAYVICGIPSNIMLAIIGARRWIAGIM 80 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence 3445556777788889999999997665543
No 185
>PRK03545 putative arabinose transporter; Provisional
Probab=38.19 E-value=22 Score=28.03 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
...+...++.+..+.+.||+|||......
T Consensus 52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 80 (390)
T PRK03545 52 IYAWVVALMSLPLMLLTSNVERRKLLIGL 80 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 33444556666777888999988766554
No 186
>TIGR00895 2A0115 benzoate transport.
Probab=37.41 E-value=18 Score=28.03 Aligned_cols=31 Identities=10% Similarity=-0.103 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
....+..+++.++.+++.||+|||....+..
T Consensus 59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 3445566778888889999999987665543
No 187
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=37.14 E-value=50 Score=15.43 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHcCChHHHHHHHHHHHHHc
Q psy2968 52 LVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 52 l~~kg~~~ea~~~l~~i~~~~ 72 (173)
+...|++++|.+.+++....+
T Consensus 11 ~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHHC
Confidence 456789999999998887654
No 188
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=36.78 E-value=1e+02 Score=20.56 Aligned_cols=29 Identities=17% Similarity=0.017 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHH-----HHH-HHHHhhcccCChHH
Q psy2968 23 NWQYLCVITSLP-----LLV-AVITPWIVPESARW 51 (173)
Q Consensus 23 ~WR~~~~i~~~~-----~~~-~~~~~~~lPESP~w 51 (173)
-.|.++.+..+. .++ .+++.+++|+-|.-
T Consensus 30 ~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~ 64 (121)
T TIGR02978 30 LVRILVVSALLFGGGFFVLVAYIALWLLLDKKPIN 64 (121)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccc
Confidence 356666654432 222 34445568888843
No 189
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=36.32 E-value=20 Score=32.68 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
..+.+..+++.++++++.||+|||....+.
T Consensus 54 ~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~ 83 (1146)
T PRK08633 54 ALFLLPFLLLSSPAGFLADKFSKNRVIRIV 83 (1146)
T ss_pred HHHHHHHHHHhhhHhhhcccccHHHHHHHH
Confidence 345556678888999999999999876654
No 190
>PRK03699 putative transporter; Provisional
Probab=35.89 E-value=19 Score=28.46 Aligned_cols=31 Identities=13% Similarity=-0.046 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
....+...++.++.+++.||+|||.......
T Consensus 49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~ 79 (394)
T PRK03699 49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGF 79 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445566777888888889998887655543
No 191
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=35.66 E-value=25 Score=28.33 Aligned_cols=34 Identities=9% Similarity=-0.202 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+......+..+++++..+++.||+|||....+.-
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~ 75 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL 75 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3344566677888888999999999997666544
No 192
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=35.64 E-value=11 Score=29.49 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.7
Q ss_pred hcccCChHHHH
Q psy2968 43 WIVPESARWLV 53 (173)
Q Consensus 43 ~~lPESP~wl~ 53 (173)
+.+||||||.-
T Consensus 202 LsmPhSPRWhd 212 (335)
T TIGR03032 202 LSMPHSPRWYQ 212 (335)
T ss_pred ccCCcCCcEeC
Confidence 45899999863
No 193
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=35.42 E-value=26 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhccc----ccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPE----TLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d----~~grr~~~~i~ 141 (173)
......+..++..++.+++.| |+|||.+..+.
T Consensus 44 i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~ 79 (477)
T TIGR01301 44 IWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAA 79 (477)
T ss_pred HHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHH
Confidence 344556677788888899999 59999887764
No 194
>PRK03893 putative sialic acid transporter; Provisional
Probab=35.24 E-value=21 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.....+...++.++.+++.||+|||....+..
T Consensus 61 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 92 (496)
T PRK03893 61 ISAAFISRWFGGLLLGAMGDRYGRRLAMVISI 92 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33455667788899999999999998766554
No 195
>PRK03633 putative MFS family transporter protein; Provisional
Probab=33.98 E-value=14 Score=29.05 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
......+...++.++.+.+.||+|||......
T Consensus 46 ~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~ 77 (381)
T PRK03633 46 VSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLA 77 (381)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33455666777888888888888888665554
No 196
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=33.55 E-value=41 Score=15.29 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=11.3
Q ss_pred HHHcCChHHHHHHHH
Q psy2968 52 LVSQGRVDEAVVIMK 66 (173)
Q Consensus 52 l~~kg~~~ea~~~l~ 66 (173)
+...|+.++|.+.++
T Consensus 11 ~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 11 LLAQGDPDEAERLLR 25 (26)
T ss_pred HHHcCCHHHHHHHHh
Confidence 456788898888764
No 197
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=33.09 E-value=3.3e+02 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy2968 21 VANWQYLCVITSLPLLVAVIT 41 (173)
Q Consensus 21 ~~~WR~~~~i~~~~~~~~~~~ 41 (173)
..+|+..+.+..+.+++.++.
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~ 214 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICG 214 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 348998776554443333333
No 198
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=32.20 E-value=52 Score=28.34 Aligned_cols=39 Identities=5% Similarity=-0.101 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHhhhh
Q psy2968 108 KLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENF 146 (173)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~~~~ 146 (173)
.+......+...++..+.+-+.|.+|||.....+...-.
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 344445566677778888999999999988877665443
No 199
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.14 E-value=23 Score=23.67 Aligned_cols=13 Identities=0% Similarity=0.186 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy2968 25 QYLCVITSLPLLV 37 (173)
Q Consensus 25 R~~~~i~~~~~~~ 37 (173)
||++++..+..++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 4444444443333
No 200
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=31.96 E-value=37 Score=27.51 Aligned_cols=34 Identities=9% Similarity=-0.267 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
....+.+...++.++++++.||+|||....+...
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~ 114 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMF 114 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHH
Confidence 3345566778888999999999999987766543
No 201
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=31.43 E-value=23 Score=29.15 Aligned_cols=34 Identities=12% Similarity=-0.119 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
....+.+....+.+..+++.||+|||....+...
T Consensus 46 ~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 46 IIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3334555556667788999999999987766543
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=30.75 E-value=31 Score=28.39 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccc-cCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPET-LGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~-~grr~~~~i~~ 142 (173)
.......+...++.++++++.|| +|||....+..
T Consensus 52 ~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~ 86 (475)
T TIGR00924 52 IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG 86 (475)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence 33445566778888889999998 79987655543
No 203
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=30.16 E-value=1e+02 Score=17.06 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccC
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPE 47 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPE 47 (173)
-|.++|+...+.+++.++..-.++.
T Consensus 23 ww~~~f~~tivfa~~Y~~~yp~~~~ 47 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVLYPGLGN 47 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4777888888888776666444443
No 204
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=29.88 E-value=38 Score=27.03 Aligned_cols=29 Identities=10% Similarity=-0.110 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 115 GMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 115 ~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.+...+..++.+.+.||+|||........
T Consensus 56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~ 84 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFGAKPMIVTGML 84 (400)
T ss_pred HHHHHHHHhhhhHHHHHhCchHHHHHHHH
Confidence 44455556778899999999877665443
No 205
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=29.58 E-value=29 Score=28.78 Aligned_cols=30 Identities=10% Similarity=-0.022 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcccc-cCCCCCcchHHh
Q psy2968 114 LGMIGILGGALCLFLPET-LGQDLPQTLQDG 143 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~-~grr~~~~i~~~ 143 (173)
+.....+..++++++.|| +|||....++..
T Consensus 59 ~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 59 FAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred HHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 344455556688999998 899977666554
No 206
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=29.55 E-value=55 Score=18.78 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy2968 22 ANWQYLCVITSLPLLVAVIT 41 (173)
Q Consensus 22 ~~WR~~~~i~~~~~~~~~~~ 41 (173)
.+||+...++++.+++.+.+
T Consensus 3 rg~r~~~~~ggfVg~iG~a~ 22 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAAL 22 (58)
T ss_pred ccccchhhHHHHHHHHHHHH
Confidence 48999999999887775433
No 207
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=28.79 E-value=1.2e+02 Score=17.46 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=7.1
Q ss_pred HHhcchhHHHHHHHHH
Q psy2968 18 AYYVANWQYLCVITSL 33 (173)
Q Consensus 18 ~~~~~~WR~~~~i~~~ 33 (173)
++.+.||-.++.+-.+
T Consensus 38 gftiagwlvvfcirlv 53 (73)
T PF07069_consen 38 GFTIAGWLVVFCIRLV 53 (73)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333455555444333
No 208
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.60 E-value=77 Score=14.70 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.0
Q ss_pred HHcCChHHHHHHHHHHHH
Q psy2968 53 VSQGRVDEAVVIMKRFEK 70 (173)
Q Consensus 53 ~~kg~~~ea~~~l~~i~~ 70 (173)
.+.|+.++|.+.++.+..
T Consensus 12 ~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 12 AKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 456788888888888875
No 209
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=27.44 E-value=97 Score=15.80 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhcccccCCCC
Q psy2968 114 LGMIGILGGALCLFLPETLGQDL 136 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~~grr~ 136 (173)
.-+..+++.++.++++.--+|.+
T Consensus 10 ~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 10 TVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSSS
T ss_pred hhHHHHHHHHhccccCCCCCCCC
Confidence 34456777788899998887765
No 210
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=27.06 E-value=86 Score=17.45 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=17.0
Q ss_pred HHHcCChHHHHHHHHHHHHHc
Q psy2968 52 LVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 52 l~~kg~~~ea~~~l~~i~~~~ 72 (173)
|+..|++++|.+.++++...+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~ 21 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN 21 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT
T ss_pred ChhccCHHHHHHHHHHHHHHC
Confidence 456788999999999988654
No 211
>PRK10504 putative transporter; Provisional
Probab=26.94 E-value=37 Score=27.54 Aligned_cols=30 Identities=7% Similarity=-0.109 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 112 IILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 112 i~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
....+...++.++.+.+.|++|||......
T Consensus 52 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 81 (471)
T PRK10504 52 VSYVLTVAVMLPASGWLADRVGVRNIFFTA 81 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 344555677788889999999998765543
No 212
>KOG3312|consensus
Probab=26.90 E-value=1.9e+02 Score=20.09 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=19.9
Q ss_pred cccCChHHHHHcCChHHHHHHHHHHHHHcCCC
Q psy2968 44 IVPESARWLVSQGRVDEAVVIMKRFEKINNKK 75 (173)
Q Consensus 44 ~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~ 75 (173)
.+..+-+|.-.|...+++.+-|.+....+++.
T Consensus 29 lvYRt~~Yk~LKa~vdK~sKKLE~~K~~~~~s 60 (186)
T KOG3312|consen 29 LVYRTDKYKRLKAEVDKQSKKLEKKKEENGDS 60 (186)
T ss_pred EEEehhHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 46677777766666666666666665555443
No 213
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=25.86 E-value=1.7e+02 Score=18.11 Aligned_cols=39 Identities=13% Similarity=-0.099 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHh
Q psy2968 4 AIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITP 42 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~~ 42 (173)
.....+|++++.+++.... ..|.++..+.+.+.+.....
T Consensus 33 asaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 33 ASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM 74 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3445678888887766553 33445555555555444333
No 214
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=25.49 E-value=1.5e+02 Score=22.84 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHHHHHHHhh
Q psy2968 4 AIFFTLAASLLPWIAYYV--------ANWQYLCVITSLPLLVAVITPW 43 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~--------~~WR~~~~i~~~~~~~~~~~~~ 43 (173)
..++++|.+++.+.-... .+|++++.+.++..++.++...
T Consensus 12 ~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 12 PWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred cccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677776665542222 2799999988877666555444
No 215
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=24.29 E-value=1.7e+02 Score=22.58 Aligned_cols=13 Identities=31% Similarity=1.012 Sum_probs=9.3
Q ss_pred HHhhcccCChHHH
Q psy2968 40 ITPWIVPESARWL 52 (173)
Q Consensus 40 ~~~~~lPESP~wl 52 (173)
+-...+||+|.|.
T Consensus 103 i~~~~lp~TP~~~ 115 (320)
T PF03845_consen 103 IKTYLLPETPIWV 115 (320)
T ss_pred HHHHhcCcCCHHH
Confidence 3345699999974
No 216
>CHL00024 psbI photosystem II protein I
Probab=24.21 E-value=88 Score=15.95 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcccccCCCC
Q psy2968 115 GMIGILGGALCLFLPETLGQDL 136 (173)
Q Consensus 115 ~~~~~~~~~~~~~l~d~~grr~ 136 (173)
-+..+++.++.++++.--+|.+
T Consensus 11 vV~ffvsLFifGFlsnDp~RnP 32 (36)
T CHL00024 11 VVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_pred HHHHHHHHHHccccCCCCCCCC
Confidence 4456677788899998887765
No 217
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=24.16 E-value=84 Score=16.17 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcccccCCCC
Q psy2968 115 GMIGILGGALCLFLPETLGQDL 136 (173)
Q Consensus 115 ~~~~~~~~~~~~~l~d~~grr~ 136 (173)
-+..+++.++.++++.--||.+
T Consensus 11 vV~ffvsLFiFGflsnDP~RnP 32 (38)
T PRK02655 11 VVFFFVGLFVFGFLSSDPTRNP 32 (38)
T ss_pred hHHHHHHHHHcccCCCCCCCCC
Confidence 3456777788899998777764
No 218
>PRK11010 ampG muropeptide transporter; Validated
Probab=23.11 E-value=1.5e+02 Score=24.47 Aligned_cols=26 Identities=4% Similarity=0.276 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPES 48 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPES 48 (173)
||+..+.+..+.+++.++...+++++
T Consensus 380 G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 380 GWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999998888877766666655554
No 219
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=23.01 E-value=83 Score=19.64 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy2968 23 NWQYLCVITSLPLLVAVITP 42 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~ 42 (173)
-||-+.++.++|++++..+-
T Consensus 15 ~WkkiS~~va~P~v~l~~~n 34 (86)
T cd00925 15 LWKKISFYVALPAVALCMLN 34 (86)
T ss_pred hhhhhhhhhHHHHHHHHHHH
Confidence 69999999999987655443
No 220
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=22.95 E-value=85 Score=26.48 Aligned_cols=33 Identities=9% Similarity=-0.094 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHHhhh
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQDGEN 145 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~~~ 145 (173)
...+-.++.+++++.+.|+++||......+.-.
T Consensus 53 a~~LP~~Llsl~aG~laDr~drrrili~~~~~~ 85 (524)
T PF05977_consen 53 ASTLPILLLSLFAGALADRFDRRRILILSQLLR 85 (524)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 334455677888999999999998888876543
No 221
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=22.51 E-value=1.7e+02 Score=27.42 Aligned_cols=38 Identities=24% Similarity=0.146 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHH
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~e 60 (173)
+|-.+|.+......+.--...-.-++-||++.|...+|
T Consensus 177 s~~slffii~~~~~vY~~~~~rv~rnird~v~~~~~~e 214 (1227)
T COG5038 177 SFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSEE 214 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333332333336777788876655444
No 222
>KOG3097|consensus
Probab=22.33 E-value=1.2e+02 Score=24.49 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHhhhhc
Q psy2968 107 PKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFG 147 (173)
Q Consensus 107 ~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~~~~~ 147 (173)
....++.+++..-+.+.+.+.+.+++||.++....+.+++.
T Consensus 312 igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~ 352 (390)
T KOG3097|consen 312 IGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLL 352 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 34556677888788888889999999999999998877663
No 223
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=21.93 E-value=1.2e+02 Score=14.73 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=14.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHc
Q psy2968 51 WLVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 51 wl~~kg~~~ea~~~l~~i~~~~ 72 (173)
.+...|++++|.+...+.....
T Consensus 11 ~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 11 AYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchhhHHHHHHHHHH
Confidence 3556788999988887766443
No 224
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=21.77 E-value=2.3e+02 Score=23.64 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHhc------------------chhHHHHHHHHHHHHHH-HHHhhcccCCh
Q psy2968 4 AIFFTLAASLLPWIAYYV------------------ANWQYLCVITSLPLLVA-VITPWIVPESA 49 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~------------------~~WR~~~~i~~~~~~~~-~~~~~~lPESP 49 (173)
+.+..+|.++++.++... .+-|..|.+.++..++. ++..+..+|.|
T Consensus 158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 344567777777665432 04577888877665554 45566789987
No 225
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=21.22 E-value=2.1e+02 Score=22.20 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
=||.+++++.+=.+.+.++++. ..++|++.++.+.
T Consensus 5 ~WR~v~g~~v~Y~~~L~fllfq------------~~~~~r~~l~~~d 39 (280)
T PF03034_consen 5 FWRIVFGLSVLYLLFLVFLLFQ------------NRDDARQILKYLD 39 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC------------cHHHHHHHHHhcC
Confidence 3999999887665554444443 3456666665554
No 226
>KOG2816|consensus
Probab=21.17 E-value=72 Score=26.51 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHHhhhhc
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQDGENFG 147 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~~~~~ 147 (173)
..++..++.+..-+-+.|++|||....+.-....-
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l 104 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL 104 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence 45777888888999999999999999888766553
No 227
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=21.11 E-value=1.4e+02 Score=23.67 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc
Q psy2968 23 NWQYLCVITSLPLLVAVITPWI 44 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~ 44 (173)
||+.++.+.++.+++.++..+.
T Consensus 367 G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 367 GWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988887776555543
No 228
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=21.05 E-value=1.3e+02 Score=19.11 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy2968 24 WQYLCVITSLPLLVAVITPWI-VPESA 49 (173)
Q Consensus 24 WR~~~~i~~~~~~~~~~~~~~-lPESP 49 (173)
|-.++.+.++...+++--+.| +||+.
T Consensus 4 w~l~Lc~~SF~~G~lft~R~W~~pe~~ 30 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNRMWTVPESK 30 (95)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccc
Confidence 333333444444444444555 88764
No 229
>PHA00022 VII minor coat protein
Probab=21.01 E-value=47 Score=15.77 Aligned_cols=19 Identities=5% Similarity=-0.027 Sum_probs=12.2
Q ss_pred chhhHHHHHHHHHHHHHHh
Q psy2968 2 SIAIFFTLAASLLPWIAYY 20 (173)
Q Consensus 2 ~~~~~~~~G~~~~~~l~~~ 20 (173)
++++.+.+|.++++.++..
T Consensus 5 i~q~v~~lglVi~FgLG~I 23 (28)
T PHA00022 5 IYQVVIALGLVICFGLGAI 23 (28)
T ss_pred HHHHHHHHhHHHhhcccee
Confidence 4566777777776666544
No 230
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=20.86 E-value=2.3e+02 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhc---chhHHHHHHHHHHH
Q psy2968 7 FTLAASLLPWIAYYV---ANWQYLCVITSLPL 35 (173)
Q Consensus 7 ~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~ 35 (173)
.++|..+++.+.-.+ .+|++.|.++++..
T Consensus 147 ~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 445666665554443 28999999876543
No 231
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=20.80 E-value=1.8e+02 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
=||.+++++.+=.++..++++. ..++|++.++.+.
T Consensus 69 ~WR~v~gl~vlYl~~LvFLLFq------------~~~d~R~~l~~ld 103 (353)
T PLN02930 69 IWRLVHGMAVVYLVALTFLLFQ------------KRDDARQFMKFLH 103 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------------cHHHHHHHHHhcC
Confidence 3999998887655554444443 3456666665554
No 232
>KOG2563|consensus
Probab=20.57 E-value=69 Score=26.69 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=30.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 106 NPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
...+.++++.++.+...+.+.|+.||+|-|....+...
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 34567778899999999999999999999976665544
No 233
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=20.19 E-value=91 Score=24.99 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcccccCCCCCcch
Q psy2968 117 IGILGGALCLFLPETLGQDLPQTL 140 (173)
Q Consensus 117 ~~~~~~~~~~~l~d~~grr~~~~i 140 (173)
.+.+...+.+.+.||+|||....+
T Consensus 81 Ss~i~g~~~G~laD~~Grk~~cl~ 104 (354)
T PF05631_consen 81 SSAIFGTFVGSLADRYGRKKACLL 104 (354)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHH
Confidence 345556677889999999865544
No 234
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=20.11 E-value=1.2e+02 Score=14.11 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHcCChHHHHHHHHHHHHHc
Q psy2968 52 LVSQGRVDEAVVIMKRFEKIN 72 (173)
Q Consensus 52 l~~kg~~~ea~~~l~~i~~~~ 72 (173)
+...|+.++|.+.+++....+
T Consensus 11 y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 11 YEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC
Confidence 345788899999888877654
No 235
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=20.08 E-value=1.9e+02 Score=22.80 Aligned_cols=30 Identities=7% Similarity=-0.056 Sum_probs=18.9
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhhcc
Q psy2968 16 WIAYYVANWQYLCVITSLPLLVAVITPWIV 45 (173)
Q Consensus 16 ~l~~~~~~WR~~~~i~~~~~~~~~~~~~~l 45 (173)
++.....+|+++.++..+..++.++..++.
T Consensus 23 l~~~L~r~k~~Ii~~~~~~~~lg~~Ya~~a 52 (325)
T PRK15471 23 LLVQLWRGKMTIIISVIVAIALAVGYLAVA 52 (325)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 444455588888877777766655555444
No 236
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=20.04 E-value=2.1e+02 Score=23.49 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhcccC
Q psy2968 28 CVITSLPLLVAVITPWIVPE 47 (173)
Q Consensus 28 ~~i~~~~~~~~~~~~~~lPE 47 (173)
..++.++.++.+...+.+|+
T Consensus 428 i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 428 ILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 34455666666666668887
Done!