Query psy2968
Match_columns 173
No_of_seqs 129 out of 1269
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 22:10:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.5 1.6E-14 5.6E-19 115.6 7.6 137 3-142 167-349 (491)
2 1pw4_A Glycerol-3-phosphate tr 96.5 0.00089 3E-08 52.3 1.9 49 4-52 161-214 (451)
3 4aps_A DI-OR tripeptide H+ sym 96.4 0.046 1.6E-06 43.1 11.4 31 109-139 323-353 (491)
4 3o7q_A L-fucose-proton symport 96.4 0.0027 9.1E-08 49.4 4.0 34 109-142 299-332 (438)
5 2gfp_A EMRD, multidrug resista 91.7 0.19 6.3E-06 38.1 4.3 49 3-51 129-181 (375)
6 2cfq_A Lactose permease; trans 79.8 1.4 4.7E-05 34.0 3.3 34 109-142 47-80 (417)
7 4gc0_A D-xylose-proton symport 78.8 0.44 1.5E-05 37.4 0.2 31 113-143 63-93 (491)
8 2gfp_A EMRD, multidrug resista 67.3 4.3 0.00015 30.4 3.3 35 109-143 39-73 (375)
9 2xut_A Proton/peptide symporte 53.6 14 0.00049 28.9 4.2 41 3-43 153-196 (524)
10 1pw4_A Glycerol-3-phosphate tr 49.8 4.6 0.00016 30.9 0.7 35 109-143 66-100 (451)
11 3o7q_A L-fucose-proton symport 45.7 4.2 0.00014 31.0 -0.1 35 109-143 65-99 (438)
12 2cfq_A Lactose permease; trans 44.5 7.2 0.00025 29.9 1.1 29 113-141 267-295 (417)
13 4aps_A DI-OR tripeptide H+ sym 40.9 7.7 0.00026 30.2 0.8 35 109-143 58-93 (491)
14 2xut_A Proton/peptide symporte 36.2 14 0.00048 29.0 1.6 34 109-142 58-92 (524)
15 3sk7_A Protein SEQA; sequestra 31.9 22 0.00076 22.6 1.7 25 45-69 75-99 (116)
16 1v54_G Cytochrome C oxidase po 27.9 54 0.0019 19.5 2.8 21 23-43 15-35 (85)
17 1clv_I Protein (alpha-amylase 27.5 15 0.00052 16.8 0.2 18 148-165 8-25 (32)
18 3arc_I Photosystem II reaction 23.5 78 0.0027 15.6 3.1 23 114-136 10-32 (38)
19 1j3e_A SEQA protein; protein-D 23.1 31 0.0011 21.9 1.1 25 45-69 74-98 (115)
20 2ls4_A High affinity copper up 26.9 20 0.00068 16.3 0.0 17 9-25 7-23 (26)
21 2y69_G Cytochrome C oxidase po 20.8 87 0.003 19.1 2.8 21 23-43 27-47 (97)
22 3ukm_A Potassium channel subfa 20.7 2.6E+02 0.0088 20.5 6.4 38 23-60 10-48 (280)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.52 E-value=1.6e-14 Score=115.57 Aligned_cols=137 Identities=20% Similarity=0.347 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHH
Q psy2968 3 IAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKI 71 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~-----------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~ 71 (173)
.+.++.+|.+++.++++.. ..||+++.+..++.++.++.++++|||||||..|++.+|+.+.+++..+.
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 4566778888877777654 26999999999999999999999999999999999999999999998764
Q ss_pred cCCCCChHHHHHHHHHHHHHh---hhhhhccccc--------------------------------cccccchhHHHHHH
Q psy2968 72 NNKKVDPKLYQQLKETCQRQA---KQEIDGKRYS--------------------------------AVINPKLPLIILGM 116 (173)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------------------------------~~~~~~~~~i~~~~ 116 (173)
+... +...+..+...... .......... ...+.....+..++
T Consensus 247 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 247 TLAT---QAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred chhH---HHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence 3211 11111111111000 0000000000 11223344566788
Q ss_pred HHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 117 IGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 117 ~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
+.+++++++.++.||+|||.......
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~ 349 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGA 349 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCcchhccch
Confidence 89999999999999999998766544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.51 E-value=0.00089 Score=52.27 Aligned_cols=49 Identities=6% Similarity=0.151 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHhc---ch-hHHHHHHHHHHHHHH-HHHhhcccCChHHH
Q psy2968 4 AIFFTLAASLLPWIAYYV---AN-WQYLCVITSLPLLVA-VITPWIVPESARWL 52 (173)
Q Consensus 4 ~~~~~~G~~~~~~l~~~~---~~-WR~~~~i~~~~~~~~-~~~~~~lPESP~wl 52 (173)
+.+..+|.++++.++..+ .+ ||+.+++.+++.++. ++..+++||+|+..
T Consensus 161 ~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 161 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 455666666666665332 26 999999988877664 44556799999764
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.41 E-value=0.046 Score=43.13 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQT 139 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~ 139 (173)
......++..+++..+.+++.||+|||.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~ 353 (491)
T 4aps_A 323 WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS 353 (491)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHTTTC---C
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence 4445667777888888999999999986544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.40 E-value=0.0027 Score=49.41 Aligned_cols=34 Identities=9% Similarity=-0.140 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
......++..+++.++++++.||+|||....+..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4455567788899999999999999997665543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=91.66 E-value=0.19 Score=38.09 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHH-HhhcccCChHH
Q psy2968 3 IAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI-TPWIVPESARW 51 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~-~~~~lPESP~w 51 (173)
.+.+..+|.++++.++..+. +||+.+.+.++..++..+ ..+++||+|+.
T Consensus 129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 34566777777777766553 899999998887776655 56679999865
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=79.80 E-value=1.4 Score=34.04 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~ 142 (173)
.......+...++.++.+++.||+|||+...+..
T Consensus 47 ~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~ 80 (417)
T 2cfq_A 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4445567788899999999999999998776654
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=78.80 E-value=0.44 Score=37.36 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
...+..++|+++++++.||+|||+...++..
T Consensus 63 ~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~ 93 (491)
T 4gc0_A 63 SALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455678899999999999999987766543
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=67.25 E-value=4.3 Score=30.37 Aligned_cols=35 Identities=3% Similarity=-0.165 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
.......+...++.++.+++.||+|||....+...
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 73 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 34455677778889999999999999988876543
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=53.65 E-value=14 Score=28.94 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhh
Q psy2968 3 IAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPW 43 (173)
Q Consensus 3 ~~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~ 43 (173)
.+.+..+|.++++.++..+ .+||+.+++.++..++..+..+
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3445666776666654433 2899999998877666544433
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=49.80 E-value=4.6 Score=30.91 Aligned_cols=35 Identities=3% Similarity=-0.203 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+...++.++.+++.||+|||....+...
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 44456677788889999999999999987666543
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=45.72 E-value=4.2 Score=31.03 Aligned_cols=35 Identities=9% Similarity=-0.289 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~ 143 (173)
+......+...++.++.+.+.||+|||....+...
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 34445666778889999999999999987766543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=44.50 E-value=7.2 Score=29.89 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968 113 ILGMIGILGGALCLFLPETLGQDLPQTLQ 141 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~ 141 (173)
+.++..+++.++.+++.||+|||....+.
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 34456677888999999999999765543
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=40.90 E-value=7.7 Score=30.17 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccc-cCCCCCcchHHh
Q psy2968 109 LPLIILGMIGILGGALCLFLPET-LGQDLPQTLQDG 143 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~-~grr~~~~i~~~ 143 (173)
+......+...++.++++++.|| +|||....+...
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 44456677788899999999999 899987766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=36.23 E-value=14 Score=29.00 Aligned_cols=34 Identities=6% Similarity=-0.143 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccccc-CCCCCcchHH
Q psy2968 109 LPLIILGMIGILGGALCLFLPETL-GQDLPQTLQD 142 (173)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~l~d~~-grr~~~~i~~ 142 (173)
.......+...++.++++++.||+ |||....+..
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 334456667788899999999999 9997765543
No 15
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=31.94 E-value=22 Score=22.57 Aligned_cols=25 Identities=8% Similarity=0.462 Sum_probs=17.8
Q ss_pred ccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 45 VPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 45 lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
+|+||.|.+......+-...|..+-
T Consensus 75 Ip~TpfWViTN~NT~rKr~ml~~vm 99 (116)
T 3sk7_A 75 IPNTPFWVITNNNTSRKQQMVEQVM 99 (116)
T ss_dssp CTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred CCCCCeeEEeCCCcHHHHHHHHHHH
Confidence 7999999887766655555565554
No 16
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=27.93 E-value=54 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy2968 23 NWQYLCVITSLPLLVAVITPW 43 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~ 43 (173)
-||.+.++.++|++++...-.
T Consensus 15 ~Wkkis~~va~P~v~l~~~n~ 35 (85)
T 1v54_G 15 TWRFLTFGLALPSVALCTLNS 35 (85)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999887655433
No 17
>1clv_I Protein (alpha-amylase inhibitor); insect alpha-amylase inhibitor, amaranthus hypochondriacus, yellow MEAL WORM, knottin, hydrolase; 2.00A {Tenebrio molitor} SCOP: g.3.2.1 PDB: 1htx_A 1qfd_A
Probab=27.54 E-value=15 Score=16.80 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=12.6
Q ss_pred CCCcccccccCCCCCccc
Q psy2968 148 RNQKFLDFPCCGNAGVRG 165 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~ 165 (173)
+.++|-.++||+..+-.+
T Consensus 8 cgpkmdgvpccepytcts 25 (32)
T 1clv_I 8 CGPKMDGVPCCEPYTCTS 25 (32)
T ss_dssp ECHHHHCCCBCTTCCBSC
T ss_pred cCccCCCccccCceeccc
Confidence 345667899999876544
No 18
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=23.51 E-value=78 Score=15.61 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCC
Q psy2968 114 LGMIGILGGALCLFLPETLGQDL 136 (173)
Q Consensus 114 ~~~~~~~~~~~~~~l~d~~grr~ 136 (173)
.-+..+++.++.+++..--+|.+
T Consensus 10 ~vV~ffvsLFiFGfLsnDP~RNP 32 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLSGDPARNP 32 (38)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCSS
T ss_pred hHHHHHHHHHHccccCCCCCCCC
Confidence 34456777788899988777754
No 19
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=23.08 E-value=31 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.476 Sum_probs=17.3
Q ss_pred ccCChHHHHHcCChHHHHHHHHHHH
Q psy2968 45 VPESARWLVSQGRVDEAVVIMKRFE 69 (173)
Q Consensus 45 lPESP~wl~~kg~~~ea~~~l~~i~ 69 (173)
+|+||-|-+......+-...+..+-
T Consensus 74 Ip~TpfWViTN~NT~rKr~ml~~vm 98 (115)
T 1j3e_A 74 VPGTPYWVITNTNTGRKCSMIEHIM 98 (115)
T ss_dssp CTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred CCCCCeeeeecCChHHHHHHHHHHH
Confidence 7899999887666555555555554
No 20
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=26.91 E-value=20 Score=16.28 Aligned_cols=17 Identities=18% Similarity=0.510 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcchhH
Q psy2968 9 LAASLLPWIAYYVANWQ 25 (173)
Q Consensus 9 ~G~~~~~~l~~~~~~WR 25 (173)
+..+++..+++++.+|+
T Consensus 7 iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 7 IAVAAGAGTGYFLFSWK 23 (26)
Confidence 44455566666665664
No 21
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.79 E-value=87 Score=19.13 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy2968 23 NWQYLCVITSLPLLVAVITPW 43 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~~~~~~~ 43 (173)
-||.+.++.++|++++...-.
T Consensus 27 ~WkkiS~~va~P~v~l~~~n~ 47 (97)
T 2y69_G 27 TWRFLTFGLALPSVALCTLNS 47 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999887655443
No 22
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=20.66 E-value=2.6e+02 Score=20.55 Aligned_cols=38 Identities=5% Similarity=-0.099 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHH-HHHHhhcccCChHHHHHcCChHH
Q psy2968 23 NWQYLCVITSLPLLV-AVITPWIVPESARWLVSQGRVDE 60 (173)
Q Consensus 23 ~WR~~~~i~~~~~~~-~~~~~~~lPESP~wl~~kg~~~e 60 (173)
.|+..+++.+...-+ .-...+..=|+|.....+.+.++
T Consensus 10 ~~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~ 48 (280)
T 3ukm_A 10 ATMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRK 48 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 355555554443333 33334556699977655444333
Done!